RNA 3D Hub

JAR3D Query RF00168-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00168 maps to these 16 chains: 3D0U|1|A, 3D0X|1|A, 3DIG|1|X, 3DIL|1|A, 3DIM|1|A, 3DIO|1|X, 3DIQ|1|A, 3DIR|1|A, 3DIS|1|A, 3DIX|1|A, 3DIY|1|A, 3DIZ|1|A, 3DJ0|1|A, 3DJ2|1|A, 4ERJ|1|A, 4ERL|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 13 Internal loop

Column numbers: 185-187, 197-250 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    A-U*U----------------------------------------------------U    3

    
    G-A*GGGGCAAUCA-------------------------------------------G    1

    
    G-G*C----------------------------------------------------C    1

    
    Omitted sequenced and counts

    
    --U*-----------------------------------------------------A    7

    
    --A*------------------------------------------------------    4

    
    --A*GUCGGGCGUUUCGC---------------------------------------A    3

    
    --U*-----------------------------------------------------U    3

    
    --U*------------------------------------------------------    3

    
    --A*-----------------------------------------------------U    2

    
    --C*------------------------------------------------------    2

    
    --G*------------------------------------------------------    2

    
    --A*GUCGGGCGUUUCAUACCCGAACACCUCAGCGCCCAAAGCGGUGAGUCGGGUCUA    1

    
    --G*UAGGGCGGUCA------------------------------------------A    1

    
    --U*UGGACGUCCA-------------------------------------------G    1

    
    --G*GC---------------------------------------------------C    1

    
    --U*UU---------------------------------------------------A    1

    
    CGG*-----------------------------------------------------G    1

    
    GGU*-----------------------------------------------------A    1

    
    A-A*-----------------------------------------------------C    1

    
    A-G*-----------------------------------------------------U    1

    
    G-G*-----------------------------------------------------A    1

    
    --A*-----------------------------------------------------A    1

    
    --C*-----------------------------------------------------G    1

    
    --G*-----------------------------------------------------C    1

    
    --U*-----------------------------------------------------C    1

    
    A-A*------------------------------------------------------    1

    
    G-U*------------------------------------------------------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

80.00 -1667.82 2 1

Major groove platform

2

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

20.00 -137.89 3 1

Major groove intercalation

3

Motif group IL_84476.1

Basepair signature:
cWW-cWW

20.00 -2138.98 3 2

Multiple bulged bases

4

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

20.00 -2141.92 4 1

5

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

20.00 -2149.33 4 1

Intercalated cWS

6

Motif group IL_42771.1

Basepair signature:
cWW-cWW

20.00 -2156.52 3 1

Multiple bulged bases

7

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

20.00 -2158.79 4 1

8

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

20.00 -2161.85 5 1

9

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

20.00 -2162.03 2 1

Single bulged G

10

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

20.00 -2164.24 2 1

Single stack bend

11

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

20.00 -2166.32 2 1

Single stack bend

12

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

20.00 -2173.87 4 1

Stack and bulge

13

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

20.00 -2179.97 2 1

Single bulged C

14

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

20.00 -2189.74 2 1

Single bulged A

15

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

20.00 -2200.90 1 1

Single bulged U

16

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -160.65 8 6

17

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -167.42 6 4

18

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -179.67 6 4

19

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -179.91 7 6

20

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -188.63 6 4

21

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -190.32 9 7

22

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -191.38 5 3

Multiple bulged bases

23

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -192.37 7 5

24

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -192.43 8 7

25

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -192.59 6 2

26

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -195.84 6 5

27

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -196.20 6 5

28

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -196.85 10 7

29

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -198.03 10 7

Vitamin B12 Aptamer

30

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -199.61 9 8

31

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -200.64 9 6

32

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -201.51 10 7

33

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -202.64 6 5

34

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -205.72 4 4

35

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -206.38 8 5

36

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -206.42 8 5

37

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -206.47 12 9

38

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -206.88 3 2

39

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -207.47 11 7

40

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -207.62 12 9

41

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -207.71 9 5

42

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -209.17 10 8

43

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -210.63 3 2

44

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -211.41 9 8

Reverse kink-turn related

45

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -212.58 4 2

46

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -212.73 5 3

Bulged stacked bases

47

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -213.30 10 8

48

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -214.11 8 7

49

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -214.94 6 2

50

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -215.03 7 6

Intercalated tWH

51

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -216.06 4 3

52

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -216.57 7 6

Pseudoknot

53

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -217.82 10 6

54

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -218.12 8 6

55

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -218.83 9 8

56

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -219.71 10 7

tSH-tHW

57

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -221.66 8 7

58

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -222.57 8 6

59

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -222.69 4 2

60

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -223.12 10 7

61

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -223.12 10 8

62

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -225.23 9 6

63

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -225.49 7 5

64

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -226.04 7 6

65

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -226.37 7 6

66

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -228.90 8 5

67

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -229.82 12 9

68

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -230.56 8 6

69

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -232.59 8 6

70

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -233.75 7 7

71

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -234.33 8 7

Minor groove platform

72

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -234.46 5 3

73

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -235.24 9 7

74

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -236.74 7 6

75

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -237.28 10 8

76

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -237.67 6 4

77

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -237.93 9 7

78

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -238.00 9 8

79

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -238.33 7 5

Major groove intercalation

80

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -238.76 8 6

81

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -239.30 10 7

82

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -242.18 5 4

83

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -242.33 9 6

84

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -243.94 6 4

85

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -245.29 11 8

86

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -245.61 11 9

87

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -245.87 8 7

88

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -246.90 7 5

89

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -248.37 12 8

90

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -248.88 6 6

91

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -249.71 10 8

92

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -249.72 7 5

93

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -250.41 10 8

94

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -250.93 10 8

95

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -251.81 9 9

Reverse turn

96

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -252.06 8 5

97

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -252.73 6 5

98

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -252.76 11 9

99

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -253.23 12 10

100

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -255.54 10 8

Kink-turn

101

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -255.76 7 7

102

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -255.83 8 7

103

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -256.01 7 4

104

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -256.55 8 5

Decoding loop related

105

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -257.10 4 3

106

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -257.48 6 3

Left turn

107

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -260.27 4 4

108

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -261.44 10 7

Reverse kink-turn

109

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -261.53 8 8

110

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -262.08 13 9

111

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -263.06 9 7

112

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -265.12 9 5

113

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -266.65 4 3

114

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -267.05 11 10

115

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -268.19 6 6

180 degree turn

116

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -268.78 10 7

Kink-turn related

117

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -269.49 8 7

118

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -269.74 11 8

119

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -270.14 7 6

120

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -270.76 6 5

Isolated non-canonical cWW pair

121

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -271.42 9 7

UAA/GAN related

122

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -272.39 10 9

123

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -273.43 10 8

124

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -274.75 8 7

125

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -276.00 6 6

126

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -277.37 10 9

Kink-turn

127

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -278.78 8 7

cWH basepair with bulged bases

128

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -278.79 4 3

129

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -278.87 11 9

130

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -279.06 11 9

131

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -279.15 11 9

132

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -279.45 12 10

133

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -280.87 11 9

134

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -281.92 11 10

135

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -281.98 8 6

136

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -283.18 11 10

137

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -285.74 9 5

138

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -287.52 9 7

139

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -287.97 10 10

140

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -288.09 8 6

tSH-tHW

141

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -288.41 13 11

Pseudoknot

142

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -288.55 8 6

143

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -288.97 10 9

tHW-tHW cross-strand stack

144

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -289.30 14 11

145

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -290.92 10 8

146

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -291.36 8 5

147

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -292.88 13 12

148

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -294.80 13 12

149

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -294.87 8 7

150

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -295.51 10 10

151

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -296.09 9 9

152

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -298.57 9 8

Kink-turn with embedded cWW pair

153

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -299.68 9 7

Kink-turn from U4

154

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -300.11 11 11

155

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -301.46 10 9

156

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -301.57 10 9

Sarcin-Ricin target in LSU H95; G-bulge

157

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -301.63 11 10

158

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -301.82 13 12

159

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -303.85 9 8

160

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -303.90 6 4

161

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -305.75 15 14

162

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -310.22 8 5

163

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -310.41 13 12

164

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -310.97 12 11

165

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -312.73 11 10

8x6 Sarcin-Ricin with inserted A; G-bulge

166

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -314.25 12 9

167

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -314.40 3 3

168

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -315.35 6 4

169

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -315.44 7 6

AAA cross-strand stack

170

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -315.80 10 8

171

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -316.27 9 9

Part of G-quadruplex

172

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -318.33 5 3

Decoding loop related

173

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -318.65 4 4

174

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -321.01 8 6

SSU/LSU pseudoknot

175

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -321.41 11 10

176

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -322.38 5 2

Major groove platform with intercalated tWH

177

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -322.96 11 10

178

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -326.72 5 4

179

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -327.09 17 16

Kink-turn related

180

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -330.46 12 10

tSH-tHS-tHW

181

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -334.60 13 12

182

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -335.13 13 12

183

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -338.11 11 10

184

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -338.21 12 11

185

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -338.37 12 11

186

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -341.64 19 16

187

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -342.01 7 5

188

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -342.19 12 10

189

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -343.30 13 11

190

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -345.01 17 16

191

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -348.84 13 12

192

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -348.84 10 9

Kink-turn

193

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -351.70 10 7

194

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -352.95 13 12

195

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -354.31 10 10

7x7 Sarcin-Ricin with intercalated A; G-bulge

196

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -355.42 17 15

Pseudoknot

197

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -357.20 12 12

198

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -360.13 8 5

Major groove intercalation

199

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -362.10 11 10

8x6 Sarcin-Ricin with inserted Y; G-bulge

200

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -363.01 11 11

201

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -369.18 14 13

202

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -373.36 11 11

Kink-turn

203

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -374.65 15 15

204

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -378.30 14 13

205

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -379.43 9 6

206

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -382.37 14 14

207

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -385.68 19 18

Kink-turn

208

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -388.79 14 13

209

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -389.08 7 6

UAA/GAN

210

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -389.89 13 13

211

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -391.03 16 16

212

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -393.35 6 3

Major groove minor groove platform with intercalation; mini C-loop

213

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -393.43 14 13

214

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -395.46 16 13

215

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -397.55 18 16

216

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -400.12 6 5

217

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -400.96 16 13

218

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -400.98 13 12

219

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -401.96 15 14

10x8 Sarcin-Ricin; G-bulge

220

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -405.09 14 13

221

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -405.19 14 13

222

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -411.21 10 10

Minor groove platform related

223

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -414.64 14 13

224

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -418.09 17 15

Pseudoknot

225

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -421.92 19 18

226

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -423.79 15 15

227

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -425.65 14 13

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

228

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -434.07 19 19

229

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -437.60 18 17

230

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -437.85 20 19

231

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -441.14 15 14

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

232

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -443.33 15 14

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

233

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -453.64 20 19

234

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -482.67 14 14

235

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -521.37 22 22

236

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -548.24 23 22

237

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -591.81 24 24

238

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -609.99 25 24

239

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -617.56 21 21

240

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -1120.03 13 13

241

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -1134.31 12 11

242

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -1159.17 16 15

243

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -1177.96 16 14

244

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -1183.79 7 7

245

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -1196.93 16 16

246

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -1223.27 17 16

247

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -1228.16 13 13

tSH-tHW-tHH-tHS

248

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -1242.51 11 8

Other IL

249

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -1243.54 10 7

Part of G-quadruplex

250

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -1244.92 11 9

Reverse kink-turn related

251

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -1247.10 10 8

252

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -1247.32 10 9

tWH-tWH-tHW-tHW

253

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -1247.54 11 9

Kink-turn related

254

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -1254.42 8 8

255

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -1258.29 12 10

256

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -1265.19 9 9

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

257

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -1279.72 6 5

258

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -1281.00 7 6

259

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -1281.95 12 11

8x7 Sarcin-Ricin; G-bulge

260

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -1287.09 12 10

261

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -1293.53 9 8

262

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -1293.81 9 7

263

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -1294.17 12 10

8x6 Sarcin-Ricin with bulged A; G-bulge

264

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -1294.72 10 10

Triple sheared with non-canonical cWW

265

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -1299.91 10 9

Kink-turn

266

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -1305.23 10 8

267

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -1307.11 11 10

Kink-turn

268

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -1309.17 7 6

269

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -1312.28 13 10

270

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -1313.22 21 19

Kink-turn related

271

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -1316.50 11 9

Kink-turn

272

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -1326.12 15 14

273

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -1328.85 11 11

8x7 Sarcin-Ricin; G-bulge

274

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -1330.77 6 6

Kink-turn related

275

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -1331.59 11 11

276

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -1333.25 13 11

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

277

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -1334.65 12 11

Kink-turn

278

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -1338.99 9 9

Kink-turn

279

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -1339.27 9 6

280

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -1348.08 10 9

tSH-tSH-tHH-tHS

281

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -1349.36 11 11

282

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -1353.14 8 7

Triple sheared related

283

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -1353.39 12 11

284

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -1361.65 9 9

7x6 Sarcin-Ricin; G-bulge

285

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -1369.97 15 14

Bacterial 5S Loop E

286

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -1374.40 12 12

Kink-turn related

287

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -1374.95 6 6

288

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -1377.45 12 12

289

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -1378.67 10 7

UAA/GAN with tHH

290

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -1382.28 9 8

Double sheared; A in syn; two near cWW pairs

291

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -1382.49 9 8

tSH-tWH-tHS-cWW

292

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -1383.92 9 8

Kink-turn related

293

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -1385.53 10 10

294

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -1387.58 9 7

6x5 Sarcin-Ricin; G-bulge

295

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -1392.28 9 7

UAA/GAN with extra stack

296

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -1405.92 10 10

Kink-turn with non-sequential stacking

297

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -1407.20 10 9

Kink-turn

298

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -1408.18 9 7

299

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -1410.45 11 10

Kink-turn

300

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -1413.95 9 8

301

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -1415.90 6 5

Receptor of 11-nt loop-receptor motif

302

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -1420.88 21 21

303

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -1434.35 14 14

304

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -1438.31 6 5

Receptor of 11-nt loop-receptor motif

305

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -1443.57 12 11

306

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -1447.00 12 11

307

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -1456.29 8 5

308

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -1458.05 10 8

tSH-tHW-tWH-tHS

309

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -1465.63 6 5

310

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -1469.24 9 7

Other IL

311

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -1500.24 8 6

312

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -1501.44 9 7

313

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -1517.44 17 16

314

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -1519.52 6 6

315

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -1543.63 8 8

316

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -1544.30 16 14

317

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -1545.23 10 7

318

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -1566.46 8 8

UAA/GAN with extra cWW

319

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -1588.23 9 7

tSH-tHH-tHS

320

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -1604.38 6 5

321

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -1656.39 9 8

Quadruple sheared

322

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -1668.77 4 4

323

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -1690.92 7 5

324

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -1712.00 5 4

8-nt loop receptor

325

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -1735.16 6 4

326

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -1751.00 7 5

327

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -1751.12 11 8

Kink-turn

328

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -1773.91 8 6

Triple sheared

329

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1776.80 5 4

Tandem non-canonical cWW pairs

330

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -1788.99 7 6

cWH basepair and non-canonical AC

331

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1797.21 6 4

332

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -1816.68 5 4

333

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -1826.94 8 5

334

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -1849.69 6 5

335

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1856.43 6 4

336

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -1865.87 4 4

337

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -1882.62 7 5

UAA/GAN

338

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -1885.15 8 6

Symmetric double minor groove platform

339

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -1887.59 5 4

Double sheared

340

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -1901.11 4 4

341

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -1910.54 4 4

Other IL

342

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -1916.87 6 5

343

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -1951.13 6 4

344

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -1971.93 7 4

345

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -1979.17 7 6

Double sheared with non-canonical cWW

346

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -2000.90 7 4

347

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -2005.69 8 6

tSH-tWH-tHS

348

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -2022.92 7 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

349

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -2030.75 7 4

350

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -2065.40 7 3

351

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -2065.89 8 4

352

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -2090.94 6 5

tSH-tHW

353

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -2097.43 6 4

354

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -2101.40 5 4

355

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -2120.08 7 4

356

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -2128.19 7 4

Multiple bulged bases

357

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -2136.57 6 6

Triple non-canonical cWW pairs

358

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -2142.72 6 3

359

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -2181.37 4 4

Tandem non-canonical cWW pairs

360

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -2185.26 7 6

Triple sheared

361

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -2201.18 2 2

Multiple bulged bases

362

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -2213.86 4 2

363

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -2215.86 3 2

364

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -2217.17 2 2

Isolated non-canonical cWW pair

365

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -2219.67 6 4

Minor groove platform

366

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -2225.92 2 2

Isolated non-canonical cWW pair

367

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -2228.34 3 2

Isolated cWS basepair

368

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -2228.36 3 2

Isolated non-canonical cWW pair

369

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -2232.44 6 5

370

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -2235.46 2 2

Isolated non-canonical cWW pair

371

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -2239.05 3 2

Isolated non-canonical cWW contact

372

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -2240.86 4 2

Isolated tWW turn

373

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -2246.48 3 2

Isolated cWH basepair

374

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -2246.84 5 2

375

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -2255.38 4 2

Isolated tHS basepair with bulges

376

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -2257.71 4 2

Isolated non-canonical cWW pair

377

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -2276.14 5 1

378

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -2276.73 4 3

379

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -2283.06 6 3

380

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -2292.38 3 1

Major groove platform

381

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -2294.83 4 1

382

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -2294.92 4 2

383

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -2295.33 5 3

384

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -2305.32 4 3

385

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -2309.42 5 3

386

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -2312.50 6 4

387

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -2322.34 2 1

Minor groove platform

388

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -2341.97 6 3

389

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -2344.31 7 5

390

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -2363.59 5 4

391

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -2365.95 8 5

UAA/GAN related

392

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -2371.00 4 4

Tandem non-canonical cWW pairs

393

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -2380.04 6 4

394

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -2385.95 5 4

395

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -2386.00 5 4

Double sheared

396

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -2389.78 4 2

Minor groove platform, major groove intercalation

397

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -2399.05 4 2

Major groove platform with intercalation

398

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -2408.27 3 2

Minor groove platform

399

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -2412.28 5 3

Minor groove platform

400

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -2413.52 2 2

Major groove minor groove platform; mini C-loop

401

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -2436.70 3 2

Major groove platform; stack outside cWW

402

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -2448.91 6 5

UAA/GAN variation

403

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6258.36 10 9

404

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7020.53 7 5

C-loop with bulged stacked A's

405

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8856.12 4 4

C-loop

406

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 4 3

C-loop

407

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 21 21

408

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 18 18

409

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 23 23

410

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 4 2

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 6 4

Coloring options: