RNA 3D Hub

JAR3D Query RF00168-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00168 maps to these 16 chains: 3D0U|1|A, 3D0X|1|A, 3DIG|1|X, 3DIL|1|A, 3DIM|1|A, 3DIO|1|X, 3DIQ|1|A, 3DIR|1|A, 3DIS|1|A, 3DIX|1|A, 3DIY|1|A, 3DIZ|1|A, 3DJ0|1|A, 3DJ2|1|A, 4ERJ|1|A, 4ERL|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 6 Internal loop

Column numbers: 45-49, 68-78 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    AUU--*CAAUG---AAU    4

    
    UGGA-*CUGUG---AUA    3

    
    CAGAA*UGUUG---A--    3

    
    CAGAG*CGAUG---AAG    2

    
    CU---*CGAUG---AAG    2

    
    GCUA-*GGCUGUUAAAC    1

    
    AGAAG*UAGCA---GCU    1

    
    AGAUA*ACAAU---UAU    1

    
    AUGAG*CGAUG---AAG    1

    
    CAGAG*CAAUG---ACG    1

    
    CAGAG*CGCUG---AAG    1

    
    CCGAG*CAAAG---ACG    1

    
    CGGAG*CGCUG---AUG    1

    
    CGGAG*UGCUG---AUG    1

    
    GAGGU*CAAUA---CUC    1

    
    GGGAG*CUGUG---AUC    1

    
    GUGAG*CGAUG---AUC    1

    
    UAGAA*UGAUG---ACA    1

    
    UCGAG*CAAUG---ACA    1

    
    UCGAG*CGACG---ACA    1

    
    UCGAG*UUAUG---AAG    1

    
    UGGAA*UUAUG---AAG    1

    
    UGGAG*CAAUG---AAA    1

    
    UGGAG*CCGUG---AAA    1

    
    UGGAG*CGUUG---AGA    1

    
    UGGAG*CUGUG---AAA    1

    
    AGAU-*CAACA---GCU    1

    
    UGGA-*CGGGG---AAG    1

    
    CAGAA*AGUUG---A--    1

    
    GUU--*CAAUG---AGC    1

    
    UGG--*AGACG---CGU    1

    
    AGAUU*CAG------CU    1

    
    CA---*CAAUG---AAG    1

    
    CA---*CGAAG---AAG    1

    
    CU---*CGAAG---AGG    1

    
    CU---*CGAGG---AGG    1

    
    UG---*CUAAG---AAG    1

    
    Omitted sequenced and counts

    
    U----*CGAUG---A-A    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

47.83 -50.72 5 2.5

Kink-turn

2

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

41.30 -83.82 4 2

Kink-turn

3

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

39.13 -908.81 5 3

Kink-turn

4

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

26.09 -850.57 6 4

Kink-turn

5

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

15.22 -72.48 6 3

Kink-turn

6

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

15.22 -848.95 7 4.5

Kink-turn

7

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

13.04 -66.71 8.5 5

8

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

10.87 -106.96 7.5 6

cWH basepair with bulged bases

9

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

8.70 -90.90 7 5

10

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

8.70 -130.01 6 5

Kink-turn

11

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

6.52 -120.01 7 5

12

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

6.52 -140.62 7 5

Kink-turn

13

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

6.52 -1672.62 7 5

Kink-turn with non-sequential stacking

14

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

4.35 -92.66 8 5

15

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

2.17 -74.61 9 6

16

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

2.17 -112.00 7 5

UAA/GAN related

17

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

2.17 -978.53 7 5.5

18

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -61.46 9 6

19

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -70.62 9 5

Reverse turn

20

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -74.31 6 5

21

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -74.55 7 5

22

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -82.11 7 5

23

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -86.90 6 5

24

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -90.18 9 7

25

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -92.92 7 5

26

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -95.12 9 6

27

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -96.46 8 5

28

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -96.89 6 5

tSH-tHS-tHW

29

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -101.59 9 6

30

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -101.83 10 7

31

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -102.12 9 8

32

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -102.23 7 6

33

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -104.53 7 6

34

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -108.79 8 7

35

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -109.64 7 6

Vitamin B12 Aptamer

36

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -110.11 8 7

37

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -110.73 8 7

38

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -111.50 8 5

tHW-tHW cross-strand stack

39

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -111.92 9 7

40

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -112.62 9.5 7

41

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -115.41 8.5 6

42

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -116.15 9 7

43

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -117.93 8 6

44

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -118.06 8 7

45

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -118.47 8.5 7

46

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -119.66 7 4

47

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -120.45 7 5

Reverse kink-turn

48

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -122.27 7 5

49

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -122.52 5 3

Kink-turn from U4

50

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -122.54 7 5

51

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -122.88 7 5

52

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -123.35 7 6

53

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -123.61 7 5

Kink-turn with embedded cWW pair

54

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -124.58 9 7

Reverse kink-turn related

55

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -124.70 8 5

56

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -125.68 8 6

57

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -126.13 8 5

58

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -126.17 8 6

59

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -127.19 9 6

60

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -128.28 9 6

61

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -129.23 9.5 7

62

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -130.11 7 5

63

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -130.54 8 6

tSH-tHW

64

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -132.07 9 7

Kink-turn related

65

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -132.84 7 5

66

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -134.30 10 8

67

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -135.01 8 5

UAA/GAN with extra stack

68

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -135.59 9 7

69

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -137.18 7 5

70

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -137.43 8 6

71

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -138.03 10 7

72

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -139.65 8 6

73

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -139.98 8 6

Kink-turn related

74

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -140.04 7 5

6x5 Sarcin-Ricin; G-bulge

75

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -140.28 10.5 8

76

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -140.91 9 7

77

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -141.46 9 6

8x6 Sarcin-Ricin with inserted A; G-bulge

78

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -142.45 8 7

Kink-turn related

79

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -142.75 7 6

80

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -142.76 7.5 5

81

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -146.89 9 6

82

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -146.97 6 5

83

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -147.32 8 5.5

Pseudoknot

84

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -147.41 9 6

85

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -148.59 8.5 6

Part of G-quadruplex

86

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -149.50 6 4

87

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -151.83 9 7

88

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -152.79 7 5

180 degree turn

89

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -152.92 10 8

90

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -153.13 8 6

Kink-turn

91

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -154.80 12 10

92

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -154.90 7 5

Other IL

93

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -157.16 12 8

94

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -157.76 9 8

95

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -158.83 8 6

96

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -161.15 8 6

Kink-turn related

97

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -163.08 9 7

98

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -164.25 9 8

99

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -164.40 7 5

100

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -164.56 7 5

101

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -165.19 9 7

102

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -165.34 9 7

103

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -165.58 10 7

104

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -167.45 11.5 9

105

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -167.55 8 6

Sarcin-Ricin target in LSU H95; G-bulge

106

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -168.52 10 8

107

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -169.09 10 7

108

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -169.19 8 6

109

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -169.32 8 5

Intercalated tWH

110

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -172.61 12 10

Kink-turn related

111

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -173.08 7 6

112

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -173.17 11 9

113

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -173.34 13 9

Pseudoknot

114

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -173.95 7 6

115

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -174.13 9 7

116

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -174.61 9 7

117

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -175.37 8 6

118

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -176.57 9 8

119

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -176.69 9 7

120

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -176.75 11 9

121

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -177.84 10 7

122

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -177.98 11.5 8

123

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -179.42 8 6

Triple sheared related

124

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -180.69 12 9

125

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -183.16 11.5 8

126

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -184.00 8.5 5

8x6 Sarcin-Ricin with bulged A; G-bulge

127

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -186.57 10 7

128

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -186.59 9 7

Reverse kink-turn related

129

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -187.01 6 4

tSH-tHW

130

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -189.70 9 7

131

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -190.65 8 6

132

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -190.82 9 6

133

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -191.08 8 6

Double sheared; A in syn; two near cWW pairs

134

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -192.64 8 7

135

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -192.99 7 5

136

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -195.32 8 6

137

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -196.81 9 6

8x6 Sarcin-Ricin with inserted Y; G-bulge

138

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -196.95 9 7

139

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -197.43 7.5 7

140

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -197.55 10 8

141

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -199.40 8 6

142

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -199.90 12.5 10.5

143

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -200.19 6 5

Isolated non-canonical cWW pair

144

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -201.04 7 5

145

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -201.21 7 5

146

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -202.03 8 5

147

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -202.36 10 8

148

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -202.92 8 6

149

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -203.26 14 13

150

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -205.68 9 7

151

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -205.71 8 7

152

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -205.87 10 8

153

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -206.34 11 8

10x8 Sarcin-Ricin; G-bulge

154

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -207.36 14 11

Kink-turn

155

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -208.93 10 8

156

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -211.50 10 7

157

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -212.53 9 6

158

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -213.78 9 6

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

159

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -214.25 10.5 9

160

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -216.99 6 4

AAA cross-strand stack

161

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -217.64 9 6

162

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -218.66 9 7

163

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -218.76 7 5

164

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -218.98 9.5 7

Minor groove platform

165

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -219.10 7 5

166

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -219.33 9.5 7

Minor groove platform related

167

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -221.38 12 11

168

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -221.90 9 7

169

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -222.27 14 12

170

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -222.78 8 6

7x7 Sarcin-Ricin with intercalated A; G-bulge

171

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -223.31 10 8

tSH-tHW-tHH-tHS

172

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -223.83 8.5 6

173

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -224.53 8 5

174

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -225.75 8 7

Major groove intercalation

175

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -226.77 9 8

176

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -229.48 10.5 9

177

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -230.14 7 5

178

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -230.24 10 7

179

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -230.61 7 6

180

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -230.66 10 8

181

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -231.82 13 10

182

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -232.30 10 8

183

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -234.24 11 8.5

184

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -234.32 9 7

185

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -235.01 11 9

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

186

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -235.12 7 5

7x6 Sarcin-Ricin; G-bulge

187

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -237.58 8 5

Decoding loop related

188

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -237.81 8 6

Triple sheared with non-canonical cWW

189

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -237.87 6 5

190

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -239.59 7 5

UAA/GAN with extra cWW

191

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -243.27 9 6

192

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -245.67 7 5

193

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -245.97 14 10.5

Pseudoknot

194

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -246.94 8 7

195

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -251.52 11 9

196

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -253.82 10 8

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

197

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -254.88 8 7

8x7 Sarcin-Ricin; G-bulge

198

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -255.04 8 6

199

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -255.07 14 11

200

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -256.03 9 7

8x7 Sarcin-Ricin; G-bulge

201

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -256.63 7 6

202

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -258.04 7 5

203

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -258.52 7 6

204

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -262.86 14 13

205

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -263.35 6 4.5

206

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -264.41 8 5

207

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -264.99 9 7

208

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -266.21 7 6

SSU/LSU pseudoknot

209

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -266.55 11 10

Pseudoknot

210

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -267.35 9 7

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

211

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -269.83 7 5

212

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -274.57 5 5

UAA/GAN

213

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -274.77 9 6

214

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -275.20 11 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

215

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -275.64 10 9

216

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -276.98 9 6

217

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -277.59 7 5

218

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -280.40 7 6

219

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -281.21 7 6

220

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -282.20 8 7

221

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -282.63 16 13

222

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -285.91 11 9

223

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -288.74 12 11

224

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -288.89 7 5.5

225

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -291.78 11 9

226

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -292.23 6 5

227

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -293.60 10 7

228

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -294.47 8 6

229

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -295.16 7 5.5

230

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -296.29 8 8

231

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -297.29 11 9

232

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -298.30 6.5 6

233

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -298.40 10.5 9

234

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -298.99 8 7

235

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -300.16 7 5

236

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -307.05 17 14

237

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -309.74 15 12

238

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -314.84 12 9

239

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -317.11 6 5

UAA/GAN

240

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -326.18 10 9

241

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -328.32 8 6

Major groove minor groove platform with intercalation; mini C-loop

242

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -329.25 7 5

243

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -331.57 8 7

244

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -331.77 18 15

245

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -333.09 8 6

246

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -341.04 14 12

247

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -349.51 12 9

248

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -359.04 14 10

249

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -368.53 17 16

250

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -370.68 7 6

Multiple bulged bases

251

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -372.72 7 5

252

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -374.79 7 6

253

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -379.85 6 5

254

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -380.43 6 5

255

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -380.47 6 4

UAA/GAN variation

256

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -382.23 7 5

257

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -383.52 5 4

UAA/GAN related

258

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -386.96 18 16

259

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -388.70 18 17

260

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -388.70 7 5

261

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -394.28 8 6

262

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -400.93 6 5

263

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -404.36 6 5

264

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -406.51 7.5 6

265

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -407.46 10 7

266

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -417.35 19 17

267

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -422.10 6 5

Double sheared

268

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -432.10 20 18

269

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -435.16 9 7

Major groove intercalation

270

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -437.89 8 6

271

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -446.05 8 6

Minor groove platform

272

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -447.98 7 6

273

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -449.28 8 7

274

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -452.36 8 6

Left turn

275

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -453.53 9 7

Bulged stacked bases

276

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -455.09 7 5

277

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -456.40 7 5

278

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -477.28 8 6

Receptor of 11-nt loop-receptor motif

279

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -484.17 8 6

280

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -490.70 8 7

281

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -501.10 9 7

282

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -502.83 7.5 7

283

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -503.15 8 6

284

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -514.06 6 5

285

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -518.82 7 6

286

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -519.07 7.5 5

287

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -520.34 8 6

Multiple bulged bases

288

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -520.43 7 7

289

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -522.47 15 12

Kink-turn related

290

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -525.06 7 6

Decoding loop related

291

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -531.02 16 14

292

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -542.42 9 7

293

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -543.03 7 7

Major groove intercalation

294

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -548.61 7 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

295

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -555.39 7 6

Major groove platform with intercalated tWH

296

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -558.77 8 5

297

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -562.46 8 5

298

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -580.16 7 5

299

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -580.41 8 7

300

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -584.12 9 7

301

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -600.40 8 7

302

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -618.06 8 7

303

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -642.39 7 6

304

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -660.00 7 6

Isolated non-canonical cWW pair

305

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -666.70 8 6

Isolated non-canonical cWW pair

306

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -669.15 8 7

307

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -694.64 8 6.5

308

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -709.05 9.5 8

309

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -718.61 7.5 6.5

310

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -721.33 7 6

Stack and bulge

311

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -728.34 7 6

Isolated non-canonical cWW contact

312

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -739.53 8.5 8

313

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -745.53 7 7

Multiple bulged bases

314

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -748.23 8 8

Major groove platform

315

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -769.29 8 7

Minor groove platform

316

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -770.51 8 7

Intercalated cWS

317

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -784.72 9 7

318

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -793.09 7 5

319

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -795.54 7 6

Major groove minor groove platform; mini C-loop

320

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -796.16 7 6

Isolated non-canonical cWW pair

321

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -802.10 8 7

322

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -807.32 7 6

323

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -807.58 7 7

Minor groove platform

324

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -809.09 8 7

325

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -816.85 7 7

Minor groove platform, major groove intercalation

326

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -839.38 8 7

327

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -850.97 7 7

Major groove platform

328

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -859.09 7 7

Major groove platform with intercalation

329

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -865.56 9 8

330

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -883.61 7 7

Minor groove platform

331

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -888.38 7 7

Single stack bend

332

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -903.54 9 6

333

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -938.96 10 7

tWH-tWH-tHW-tHW

334

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -942.58 8 5

Other IL

335

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -952.26 8 6

Kink-turn

336

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -962.14 8 6

337

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -975.86 7 5

tSH-tSH-tHH-tHS

338

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -989.45 8 8

Single stack bend

339

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -991.38 8 8

340

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -998.29 10 7

341

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -1009.99 8 8

Single bulged U

342

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -1012.67 7.5 8

Single bulged G

343

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -1023.79 9 6

344

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -1033.18 8 6

UAA/GAN with tHH

345

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -1035.66 7.5 8

Single bulged A

346

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -1040.57 8 8

Single bulged C

347

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -1059.14 9 8

Bacterial 5S Loop E

348

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -1087.19 7 6

tSH-tWH-tHS-cWW

349

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -1087.80 7 5

Kink-turn

350

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -1105.78 8 6

351

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -1131.60 7 6

tSH-tHW-tWH-tHS

352

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -1145.23 8 6

353

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -1159.53 6 5

354

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -1166.06 8 5

tSH-tHH-tHS

355

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -1189.76 8 6

356

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -1271.43 7 5

Quadruple sheared

357

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -1296.71 7 6

Receptor of 11-nt loop-receptor motif

358

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -1363.01 6.5 4

Triple sheared

359

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -1380.03 8 5

cWH basepair and non-canonical AC

360

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1491.40 7 5

Tandem non-canonical cWW pairs

361

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -1492.07 7 5

362

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -1519.90 6 5

Double sheared with non-canonical cWW

363

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -1527.70 7 5

Double sheared

364

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -1571.22 9 6

8-nt loop receptor

365

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -1588.70 6 5

tSH-tWH-tHS

366

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -1598.37 9 7

Kink-turn related

367

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -1632.94 8 7

368

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -1655.05 8 7

Other IL

369

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -1657.03 7 5

Triple non-canonical cWW pairs

370

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -1673.30 7 5

371

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -1678.21 6 5

tSH-tHW

372

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -1699.82 5 4

Triple sheared

373

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -1731.04 7 5

374

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -1822.79 7 4

375

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -1881.32 7 5

Kink-turn

376

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1888.81 7 6

Tandem non-canonical cWW pairs

377

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -1913.10 7 5

378

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1963.69 6 5

Tandem non-canonical cWW pairs

379

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -1968.30 7 5

380

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -2036.34 9.5 6

381

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -2211.16 7 6

382

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -2223.04 6 5

383

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -2276.71 9 8

384

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -2280.25 7 6

Isolated non-canonical cWW pair

385

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -2296.22 7 6

Isolated tWW turn

386

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -2300.51 7 6

Isolated tHS basepair with bulges

387

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -2306.65 8 5

C-loop with bulged stacked A's

388

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -2308.44 7 6

Isolated cWS basepair

389

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -2321.36 7 6

Isolated cWH basepair

390

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -2463.61 7.5 7

Isolated non-canonical cWW pair

391

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -2753.96 9 6

392

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -3122.07 9 6

Symmetric double minor groove platform

393

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -3854.43 14 11

394

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -3974.20 17 16

395

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -4330.14 11 9

Part of G-quadruplex

396

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4518.58 16 15

397

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4749.25 16 13

398

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5166.55 11 8

399

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5212.88 9 7

400

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5216.08 9 7

401

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -7426.67 9.5 7

402

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -7798.15 7 6

C-loop

403

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9551.64 6 6

Multiple bulged bases

404

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9554.64 7 6

405

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9561.08 7 5

406

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9589.87 8 8

Multiple bulged bases

407

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9597.25 7 7

Major groove platform; stack outside cWW

408

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9627.92 8 8

409

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9655.01 9 8

410

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 7 6

C-loop

411

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 7

Coloring options: