RNA 3D Hub

JAR3D Query RF00230-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00230 maps to these 12 chains: 4LCK|1|C, 4LCK|1|F, 4TZP|1|C, 4TZP|1|F, 4TZV|1|C, 4TZW|1|C, 4TZZ|1|C, 4TZZ|1|F, 4TZZ|1|I, 4TZZ|1|L, 6PMO|1|A, 6POM|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 13 Internal loop

Column numbers: 517-525, 549-550 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GUGGUACCG*UC   19

    
    GUGGUACCA*UC    7

    
    GUGGAACCG*UC    4

    
    GUGGCAACG*UC    3

    
    GUGGCACCG*UC    3

    
    GUGGUACCG*CC    3

    
    GUGGAACCA*UC    2

    
    GUGGCACCG*CC    2

    
    GUGGUAACG*UC    2

    
    GUGGCACCA*UC    1

    
    GUGGUAACA*UC    1

    
    GUGGUAUCG*UC    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

100.00 78.33 1 1

2

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

100.00 66.01 3 1

3

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

72.92 5.87 7 3

4

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -23.98 6 3

5

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -31.65 7 5

6

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -32.07 6 4

Minor groove platform

7

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -43.10 8 5

8

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -46.57 5 3

9

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -49.52 8 5

10

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -54.12 8 5

11

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -64.60 10 6

12

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -64.61 8 5

13

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -66.75 9 6

14

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -71.35 6 5

15

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -74.34 8 6

16

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -76.52 7 5

17

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -77.48 8 5

18

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -78.01 10 6

19

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -81.83 9 6

20

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -83.44 9 6

Part of G-quadruplex

21

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -85.56 8 6

22

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -89.20 7 4

23

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -93.22 7 4

SSU/LSU pseudoknot

24

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -96.84 9 7

25

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -96.90 10 7

Reverse kink-turn related

26

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -101.41 8 6

27

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -102.73 9 5

28

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -105.36 9 7

29

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -107.42 9 7

Pseudoknot

30

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -111.26 9 6

31

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -125.68 8 6

32

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -127.03 9 8

33

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -128.14 9 6

34

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -131.30 10 6

35

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -132.78 9 5

36

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -132.90 8 6

37

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -137.33 8 6

Vitamin B12 Aptamer

38

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -139.93 10 7

39

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -140.94 10 7

40

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -143.76 5 5

41

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -146.09 10 8

42

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -148.05 9 7

43

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -148.77 8 7

44

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -150.31 8 6

45

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -152.15 8 6

cWH basepair with bulged bases

46

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -152.17 9 6

Major groove intercalation

47

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -153.05 6 5

48

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -153.95 5 4

49

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -155.65 12 9

50

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -158.91 7 4

51

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -160.52 8 8

52

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -164.89 8 6

Kink-turn related

53

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -166.29 6 5

Major groove intercalation

54

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -168.75 9 9

55

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -170.14 10 9

56

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -175.48 7 5

57

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -176.99 8 6

58

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -178.65 11 10

59

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -178.75 11 9

60

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -182.83 7 5

61

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -188.03 9 8

62

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -189.57 11 8

63

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -191.34 6 5

64

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -193.82 10 7

65

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -194.60 8 6

66

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -200.99 7 6

67

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -204.75 8 5

180 degree turn

68

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -206.39 12 10

Pseudoknot

69

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -206.93 9 7

70

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -207.07 13 11

71

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -207.08 8 6

72

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -207.38 11 9

73

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -210.21 8 5

tSH-tHW

74

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -210.91 10 10

75

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -211.87 9 6

76

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -213.83 10 9

77

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -213.84 16 13

Kink-turn related

78

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -215.21 9 8

79

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -215.67 10 8

80

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -216.82 8 6

81

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -218.32 14 13

82

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -219.52 9 7

83

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -219.57 10 7

84

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -225.27 10 7

Reverse kink-turn related

85

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -228.55 12 9

Reverse turn

86

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -228.70 7 5

87

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -230.59 11 9

88

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -231.31 6 5

89

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -231.77 11 9

Pseudoknot

90

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -231.89 12 11

91

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -232.69 9 8

92

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -232.98 9 6

Intercalated tWH

93

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -233.55 8 6

94

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -239.13 8 4

Multiple bulged bases

95

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -239.31 10 9

96

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -239.90 8 5

97

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -240.96 9 6

Kink-turn

98

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -244.60 4 4

Left turn

99

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -245.52 9 6

Kink-turn related

100

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -245.58 8 5

101

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -247.19 9 8

102

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -248.35 8 7

103

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -251.54 8 6

104

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -253.51 10 8

Pseudoknot

105

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -254.05 9 6

106

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -254.32 8 6

107

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -254.66 6 5

108

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -255.06 8 7

Minor groove platform related

109

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -255.16 10 8

110

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -255.28 10 8

111

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -255.56 9 6

112

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -258.72 10 7

113

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -260.36 16 14

Kink-turn

114

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -261.01 12 10

115

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -261.77 8 7

116

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -262.19 11 9

117

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -264.90 8 6

118

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -267.04 7 5

119

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -269.63 11 9

120

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -270.87 7 6

121

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -271.73 10 8

122

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -271.77 9 8

123

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -277.11 9 7

124

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -277.40 8 7

Kink-turn

125

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -277.78 13 11

126

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -277.88 6 6

127

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -278.03 11 7

128

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -279.61 9 7

129

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -282.24 10 7

130

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -283.67 8 7

UAA/GAN related

131

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -283.81 9 8

132

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -284.24 6 5

133

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -284.30 8 6

tHW-tHW cross-strand stack

134

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -284.45 5 4

135

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -286.58 6 5

136

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -288.53 5 5

137

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -289.59 13 12

138

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -291.36 15 14

139

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -292.11 12 12

140

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -293.32 9 8

141

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -294.03 8 5

Bulged stacked bases

142

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -299.13 7 5

143

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -301.49 7 5

144

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -304.97 6 5

Major groove minor groove platform with intercalation; mini C-loop

145

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -306.94 11 8

Reverse kink-turn

146

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -307.22 12 10

147

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -307.63 8 6

148

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -308.14 9 8

149

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -309.94 8 5

Isolated non-canonical cWW pair

150

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -309.98 9 8

151

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -312.42 8 8

152

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -313.94 12 12

153

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -316.57 11 8

8x6 Sarcin-Ricin with inserted A; G-bulge

154

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -317.95 9 6

155

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -318.89 16 14

156

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -321.04 11 10

157

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -321.92 8 7

158

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -324.52 12 11

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

159

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -325.08 6 5

160

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -326.16 9 7

161

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -327.18 9 6

162

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -327.82 10 9

163

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -328.08 14 13

164

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -329.58 7 6

165

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -332.44 18 16

166

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -335.41 13 11

167

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -335.96 8 5

168

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -336.64 7 5

169

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -338.41 13 12

170

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -339.55 12 10

171

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -342.19 9 7

Sarcin-Ricin target in LSU H95; G-bulge

172

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -346.24 16 15

173

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -346.93 7 4

174

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -347.14 8 7

175

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -349.03 9 8

Kink-turn with embedded cWW pair

176

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -350.73 10 10

177

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -354.56 6 5

178

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -354.56 12 10

Kink-turn related

179

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -354.60 10 10

180

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -355.36 9 6

181

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -357.11 17 16

182

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -358.31 8 6

183

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -358.58 10 8

184

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -360.86 7 7

Kink-turn

185

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -362.34 8 6

186

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -362.86 7 5

187

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -365.36 17 16

188

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -365.53 14 14

189

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -365.63 9 8

UAA/GAN with extra stack

190

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -365.74 10 7

Kink-turn from U4

191

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -366.02 13 12

192

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -366.19 9 9

tSH-tHS-tHW

193

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -366.29 9 8

194

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -367.99 12 9

195

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -370.60 9 7

196

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -371.58 9 8

197

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -371.88 8 7

198

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -372.17 9 7

199

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -373.46 5 5

Major groove intercalation

200

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -373.55 9 7

201

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -374.03 8 6

202

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -375.49 10 7

Multiple bulged bases

203

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -378.96 12 8

204

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -381.55 8 7

205

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -381.65 8 7

206

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -384.04 11 9

207

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -388.24 12 11

208

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -389.46 8 8

Part of G-quadruplex

209

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -390.48 7 5

210

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -390.54 8 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

211

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -392.78 7 7

212

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -392.92 12 9

Kink-turn

213

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -393.88 7 7

214

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -394.48 11 10

215

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -396.42 8 6

tSH-tHW

216

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -398.81 10 9

217

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -399.19 8 7

218

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -399.89 17 16

219

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -401.23 10 8

Decoding loop related

220

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -401.49 11 10

221

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -401.98 6 5

Minor groove platform

222

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -402.53 9 8

Other IL

223

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -404.27 7 5

Major groove platform with intercalated tWH

224

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -405.19 15 13

225

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -406.67 11 8

Triple sheared related

226

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -408.25 14 11

10x8 Sarcin-Ricin; G-bulge

227

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -408.97 10 8

228

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -409.05 19 18

229

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -409.89 7 5

Major groove minor groove platform; mini C-loop

230

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -412.81 11 9

231

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -414.23 5 5

232

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -417.39 9 6

233

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -418.72 6 5

234

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -420.27 8 7

235

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -420.39 11 9

tSH-tHW-tHH-tHS

236

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -421.24 14 13

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

237

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -424.42 9 9

238

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -428.27 9 8

239

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -431.63 10 8

Kink-turn related

240

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -434.35 7 7

AAA cross-strand stack

241

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -435.62 8 6

6x5 Sarcin-Ricin; G-bulge

242

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -437.33 9 9

243

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -440.25 9 8

8x6 Sarcin-Ricin with bulged A; G-bulge

244

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -445.05 8 7

Kink-turn

245

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -446.05 11 10

246

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -448.23 9 6

247

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -451.13 9 9

248

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -458.24 8 7

249

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -460.36 7 5

250

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -460.78 10 9

251

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -464.18 10 9

Double sheared; A in syn; two near cWW pairs

252

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -465.20 5 5

253

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -468.79 7 6

254

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -468.92 11 10

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

255

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -471.08 9 6

256

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -472.65 13 12

257

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -473.33 20 19

258

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -473.71 6 6

259

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -474.88 8 8

Triple sheared with non-canonical cWW

260

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -475.43 6 5

261

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -481.43 6 6

Intercalated cWS

262

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -482.06 13 11

263

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -486.82 6 6

264

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -489.92 12 10

7x7 Sarcin-Ricin with intercalated A; G-bulge

265

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -490.84 7 5

266

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -494.17 7 6

Minor groove platform, major groove intercalation

267

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -496.11 8 6

268

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -497.47 15 13

269

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -498.30 13 11

270

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -499.35 22 22

271

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -500.01 10 7

272

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -508.27 6 5

Major groove platform

273

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -509.11 7 5

274

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -512.43 9 8

275

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -514.39 11 11

Kink-turn

276

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -521.05 9 8

8x7 Sarcin-Ricin; G-bulge

277

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -528.71 7 6

278

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -532.95 7 5

Major groove platform with intercalation

279

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -546.26 8 6

280

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -549.82 14 14

281

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -551.66 6 5

Minor groove platform

282

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -553.43 6 5

Single stack bend

283

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -554.57 9 7

284

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -557.51 7 6

Decoding loop related

285

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -557.89 9 8

UAA/GAN with extra cWW

286

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -561.65 8 7

287

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -581.16 6 6

288

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -594.87 7 6

Isolated non-canonical cWW contact

289

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -598.80 8 6

290

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -600.42 8 6

UAA/GAN

291

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -615.82 16 15

Kink-turn related

292

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -623.38 10 8

UAA/GAN

293

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -624.25 7 6

294

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -639.90 8 6

295

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -640.34 8 7

296

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -672.32 14 13

297

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -696.15 18 18

298

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -716.71 7 7

299

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -723.62 9 8

Minor groove platform

300

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -740.21 8 6

UAA/GAN related

301

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -751.98 7 6

UAA/GAN variation

302

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4301.67 11 9

303

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -4313.52 13 12

304

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4357.71 12 12

305

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4539.16 18 17

306

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4706.20 13 10

307

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5062.86 11 10

308

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -5104.52 10 9

8x7 Sarcin-Ricin; G-bulge

309

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5150.35 12 11

Bacterial 5S Loop E

310

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5222.14 7 6

311

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5228.05 11 9

tWH-tWH-tHW-tHW

312

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -5234.13 9 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

313

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -5238.31 10 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

314

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5268.54 9 8

Other IL

315

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -5271.64 8 7

Kink-turn

316

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5280.55 11 10

317

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5299.54 12 11

Kink-turn related

318

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -5302.64 11 8

319

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -5308.21 11 10

320

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5308.92 9 8

Kink-turn with non-sequential stacking

321

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5312.33 10 7

322

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5313.64 10 7

323

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5317.73 10 10

324

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -5333.99 11 10

325

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5343.14 11 9

326

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -5350.88 10 8

Kink-turn

327

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -5373.03 10 8

Kink-turn

328

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -5393.11 12 12

329

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -5540.93 8 8

tSH-tSH-tHH-tHS

330

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -5615.30 11 10

331

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5625.04 8 6

332

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5632.68 8 7

7x6 Sarcin-Ricin; G-bulge

333

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -5675.03 12 12

Kink-turn

334

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -5730.46 10 10

Kink-turn

335

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5789.23 8 8

336

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5857.53 6 6

337

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5883.26 9 7

tSH-tWH-tHS-cWW

338

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -5933.85 9 8

UAA/GAN with tHH

339

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6213.39 9 9

tSH-tHW-tWH-tHS

340

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6234.96 8 8

341

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6311.97 11 9

342

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6346.02 9 7

Receptor of 11-nt loop-receptor motif

343

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -6427.67 8 6

Receptor of 11-nt loop-receptor motif

344

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -6455.51 8 7

345

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -6542.46 9 8

346

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -6622.26 8 7

347

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -6632.39 7 7

348

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -6637.97 9 9

349

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -6860.76 9 8

tSH-tHH-tHS

350

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6868.56 10 7

Kink-turn

351

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -6981.76 9 8

Quadruple sheared

352

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7033.07 9 7

C-loop with bulged stacked A's

353

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7124.02 8 7

Symmetric double minor groove platform

354

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7300.29 6 5

355

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7324.64 6 6

8-nt loop receptor

356

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7799.32 10 8

Triple sheared

357

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -7915.00 8 8

cWH basepair and non-canonical AC

358

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8018.34 9 6

359

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -8083.41 8 6

Tandem non-canonical cWW pairs

360

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -8294.02 8 7

361

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8298.16 7 6

Major groove platform

362

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8321.27 9 7

363

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -8613.73 9 7

Double sheared with non-canonical cWW

364

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -8627.11 8 7

Double sheared

365

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8726.86 9 7

Other IL

366

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8727.48 9 7

367

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8759.43 6 6

C-loop

368

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8770.60 7 7

tSH-tWH-tHS

369

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -8807.51 9 8

5x5 Sarcin-Ricin with intercalated A; G-bulge

370

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -9338.04 8 7

Triple non-canonical cWW pairs

371

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -9373.49 9 7

tSH-tHW

372

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -9437.36 9 7

373

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9475.98 7 7

Triple sheared

374

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9606.37 8 6

375

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -9702.34 7 7

376

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9954.94 7 7

Tandem non-canonical cWW pairs

377

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 6 6

Single bulged G

378

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 6 4

C-loop

379

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 6 6

Isolated non-canonical cWW pair

380

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9999.00 7 7

Double sheared

381

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 7 6

Isolated cWH basepair

382

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 6

383

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 7 7

384

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 8 7

Isolated non-canonical cWW pair

385

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 6

386

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -9999.00 8 7

387

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 6 6

Single stack bend

388

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 7 7

Isolated non-canonical cWW pair

389

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 6 6

Single bulged A

390

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 6

Stack and bulge

391

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 7 6

392

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 6 5

393

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 8 6

Multiple bulged bases

394

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 7 7

Isolated cWS basepair

395

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 7 5

Minor groove platform

396

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 6 5

Major groove platform; stack outside cWW

397

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 7 6

Isolated non-canonical cWW pair

398

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 7 6

399

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 6

400

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 6

Single bulged C

401

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 6

402

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 7 7

Isolated tWW turn

403

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 7 5

Multiple bulged bases

404

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 7 6

405

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 8 6

406

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 5 4

Multiple bulged bases

407

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 7 7

Tandem non-canonical cWW pairs

408

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 7 6

Isolated tHS basepair with bulges

409

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 7 6

Isolated non-canonical cWW pair

410

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 6 6

Single bulged U

411

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 8 6

Coloring options: