RNA 3D Hub

JAR3D Query RF00230-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00230 maps to these 12 chains: 4LCK|1|C, 4LCK|1|F, 4TZP|1|C, 4TZP|1|F, 4TZV|1|C, 4TZW|1|C, 4TZZ|1|C, 4TZZ|1|F, 4TZZ|1|I, 4TZZ|1|L, 6PMO|1|A, 6POM|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 2 Internal loop

Column numbers: 20-30, 132-144 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    G--AAGAGUAA*UGAAA--ACUA-C    3

    
    A--CAAAGUAG*UGAAA--UUCA-U    2

    
    G--AAUAGUAC*GGAAU--GGGC-C    2

    
    GA-GUAAGUAG*UGAA---UGGA-C    2

    
    G--ACAAGUAA*UGAA---UCUA-C    2

    
    AAAAGCAGUAG*CGAAU--UACAGU    1

    
    AU-ACCAGUAG*UGAAU--UACAAU    1

    
    G--AAAAGUAA*UGAAAAUUGGG-C    1

    
    GA-AACAGUAG*UGAAU--UACAGC    1

    
    G--AAAAGUAA*CGAAA-AGACA-C    1

    
    G--AAAAGUAA*UGAAA-GUGGG-C    1

    
    A--AAGAGUAG*UGAAC--CACA-C    1

    
    A--ACGAGUAC*CGAAA--AUCA-U    1

    
    A--CGAAGUAG*CGAAU--UACA-U    1

    
    A--UUUAGUAG*UGAAU--UACC-C    1

    
    G--AAAAGUAG*UGAAG--AACA-C    1

    
    G--AAGAGUAA*UGAAG--GUAG-C    1

    
    G--AAGAGUAA*UGAAU--GACA-C    1

    
    G--AAGAGUAG*UGAAA--ACUA-C    1

    
    G--AAGAGUAG*UGAAG--GUAG-C    1

    
    G--AAGAGUAU*AGAAG--GUAG-C    1

    
    G--ACAACCAA*UUUGG--ACCA-C    1

    
    G--AGGAGUAA*UGAAG--GUUG-C    1

    
    G--AGGAGUAG*CGAAC--AUCG-C    1

    
    G--AUGAGUAG*UGAAC--GCUA-C    1

    
    G--GAAAGUAU*AGAAG--UUCC-C    1

    
    A--AAUAGUAA*UGAA---CCUG-U    1

    
    A--AAUAGUAA*UGAA---UCUA-C    1

    
    A--AAUAGUAC*CGAA---CCUA-U    1

    
    A--AGAAGUAG*UGAA---UACA-U    1

    
    A--AGUAGUAA*UGAA---CUUG-U    1

    
    G---AAAGUAA*UGAAA--AUGG-C    1

    
    G---AAAGUAG*UGAAG--AGAG-C    1

    
    G---AGAGUAA*UGAAA--AGAA-C    1

    
    G--AAGAGUAC*GGAA---UGGG-C    1

    
    G--AAGAGUAU*AGAA---UGGG-C    1

    
    G--AAUAGUAA*UGAA---GCAG-C    1

    
    G--AGUAGUAA*UGAA---CUUA-C    1

    
    G--AGUAGUAG*CGAA---CUCG-C    1

    
    G---AAAGUAA*UGAA---UGGG-C    1

    
    G-----AGCAU*AGA----UUCA-C    1

    
    G-----AGUGC*GGA----GGCA-C    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

35.42 -23.39 7 4

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

2

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

4.17 -67.13 6.5 5

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

3

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

2.08 -62.80 9 6

4

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

2.08 -253.45 14 10

5

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -92.24 9 7

6

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -93.67 10 8

Pseudoknot

7

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -93.80 7 5

Bacterial 5S Loop E

8

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -95.98 8 7

9

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -106.18 15 12

10

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -117.95 14 10

11

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -118.94 12 10

12

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -125.20 13 10.5

13

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -125.54 10.5 8

14

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -126.70 6.5 5

8x7 Sarcin-Ricin; G-bulge

15

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -128.15 12 9

16

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -129.52 13 10

17

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -129.87 10 9

10x8 Sarcin-Ricin; G-bulge

18

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -130.16 8.5 6

8x7 Sarcin-Ricin; G-bulge

19

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -134.93 8 7

20

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -139.09 11 9

21

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -140.15 13 10

22

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -140.84 9 7

23

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -141.58 10 9

tSH-tHW-tHH-tHS

24

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -148.47 11 8

25

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -150.04 10 6

8x6 Sarcin-Ricin with inserted A; G-bulge

26

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -150.78 11 9.5

27

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -151.75 8 7

Kink-turn

28

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -152.48 11 9.5

29

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -164.40 12 10

30

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -165.70 10 8

31

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -166.77 8 7

32

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -167.49 7 5.5

7x7 Sarcin-Ricin with intercalated A; G-bulge

33

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -172.04 10 7.5

34

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -177.27 15.5 13

35

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -178.37 11 8

36

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -178.41 9 7

Kink-turn with non-sequential stacking

37

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -179.35 13 11

38

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -183.89 10 9

39

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -185.80 13 11

40

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -186.24 8 7

41

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -187.38 9 7

8x6 Sarcin-Ricin with bulged A; G-bulge

42

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -189.79 7 6

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

43

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -189.82 12 10

44

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -190.01 10 7.5

45

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -191.60 11 8

Kink-turn related

46

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -193.75 10 8

47

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -194.02 11 8

48

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -197.12 10 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

49

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -200.12 14 11

50

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -200.79 10 8

Kink-turn related

51

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -205.16 11 10

52

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -211.51 11 9

53

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -213.64 14 12

54

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -214.00 13 11

55

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -214.61 15 11

56

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -216.99 12 9

57

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -218.44 12 9

58

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -220.91 11 9

Kink-turn

59

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -221.20 9.5 8

60

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -221.42 12 11

61

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -224.18 12.5 10

62

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -224.84 11 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

63

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -225.10 13 9

64

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -225.12 12 11

65

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -227.40 11 9

66

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -227.67 12 10

67

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -228.85 12 9.5

68

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -229.10 14 11

69

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -229.99 11 9

70

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -232.34 13 10

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

71

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -233.95 7 6

7x6 Sarcin-Ricin; G-bulge

72

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -240.01 11 9.5

tWH-tWH-tHW-tHW

73

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -242.12 11 8

tSH-tHS-tHW

74

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -245.13 10 8

75

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -246.68 15 13

Kink-turn

76

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -250.42 13 9

Kink-turn related

77

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -250.96 10 7.5

Sarcin-Ricin target in LSU H95; G-bulge

78

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -251.37 15 12

79

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -253.50 10 8.5

tHW-tHW cross-strand stack

80

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -253.82 12 9

Minor groove platform related

81

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -254.92 10 8

82

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -255.43 13 11

83

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -257.18 10 8

Kink-turn

84

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -258.69 11.5 9

Kink-turn

85

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -259.02 10 8

86

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -263.47 11 8

87

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -264.64 11 8

88

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -266.22 18 15

89

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -267.23 12 10

Reverse turn

90

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -267.25 10 8

91

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -267.31 9 8.5

92

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -268.61 12 10

93

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -268.98 11 10

94

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -269.12 14 12

95

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -271.42 13 10

96

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -271.99 9 7

tSH-tSH-tHH-tHS

97

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -274.43 11 10

98

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -276.54 12 10

99

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -277.77 12 9

100

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -280.85 9 7

Kink-turn

101

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -281.24 12 11

102

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -281.55 10 8

103

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -281.77 12 9.5

Other IL

104

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -282.36 13 11

105

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -283.36 10 9

Triple sheared with non-canonical cWW

106

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -287.35 15 14

107

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -288.53 10 9

108

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -291.38 11 9

109

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -291.84 13 11.5

110

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -294.94 9 8

6x5 Sarcin-Ricin; G-bulge

111

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -296.97 13 10

112

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -298.48 17 15

113

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -298.98 19 16

114

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -299.99 18 16

115

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -300.57 13 10

116

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -304.10 14 12

117

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -305.76 14 12

Pseudoknot

118

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -308.23 11 9

Kink-turn related

119

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -311.95 10.5 9

tSH-tHW

120

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -312.23 14 11

121

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -313.26 9 8

122

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -316.07 12 10

123

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -316.07 10 9

124

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -317.68 10 9

Double sheared; A in syn; two near cWW pairs

125

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -320.00 12 10

Part of G-quadruplex

126

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -320.26 10 8

tSH-tHW-tWH-tHS

127

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -322.64 11 9

128

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -323.65 13 11.5

129

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -324.17 13 11

130

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -325.46 10 8

Other IL

131

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -329.10 10 8

UAA/GAN related

132

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -333.42 9 9

UAA/GAN with extra stack

133

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -335.36 11 9

134

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -339.23 14 12

135

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -340.84 13 11

136

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -342.27 12 10

Kink-turn

137

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -342.36 11 9

Triple sheared related

138

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -344.68 11 9

tSH-tWH-tHS-cWW

139

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -346.32 11 10

140

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -350.28 12 9

Kink-turn

141

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -352.72 10 8

Kink-turn

142

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -353.69 10 9

143

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -355.13 9 8

UAA/GAN with extra cWW

144

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -361.10 12 9

UAA/GAN with tHH

145

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -366.59 11 9.5

146

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -369.60 12 11

147

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -371.11 14 11

148

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -371.44 11 7

149

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -373.83 11 9

150

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -374.54 9 9

Kink-turn

151

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -374.93 12 9.5

152

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -379.49 11 10

153

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -384.32 11 9.5

Kink-turn

154

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -390.52 12 9

tSH-tHH-tHS

155

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -391.13 12 10

156

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -396.77 12 10

Reverse kink-turn

157

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -403.18 9 7

Kink-turn

158

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -406.07 13 11

159

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -407.15 9 8

Quadruple sheared

160

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -411.01 11 9

161

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -412.88 11 10

162

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -422.36 12 10

163

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -423.23 11 9

164

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -434.05 11 9

Kink-turn with embedded cWW pair

165

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -437.64 12 10

166

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -441.59 11 9

Kink-turn from U4

167

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -443.33 12 11

168

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -444.29 13 11

169

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -460.30 11 11

Pseudoknot

170

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -461.91 11 10

171

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -469.37 20 17.5

172

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -483.35 13 11

173

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -488.24 17 15

174

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -495.61 11 10

175

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -526.81 11 9

176

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -529.41 13 11

177

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -529.74 14 11

Kink-turn related

178

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -534.40 12 10

Triple sheared

179

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -550.76 12 9

tSH-tHW

180

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -554.95 13 11

cWH basepair and non-canonical AC

181

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -558.56 11 9

AAA cross-strand stack

182

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -563.57 12 10

183

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -573.76 13 10

184

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -592.82 13 11

Decoding loop related

185

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -613.80 14 12

186

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -614.30 13 11

187

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -621.47 11 9

UAA/GAN

188

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -642.69 11 10

Double sheared with non-canonical cWW

189

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -651.92 11 9.5

190

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -657.03 12 10.5

191

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -660.19 13 11

192

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -677.90 10 9

tSH-tWH-tHS

193

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -683.16 12 10

UAA/GAN

194

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -689.52 10 9

Triple non-canonical cWW pairs

195

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -702.88 11 10

196

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -707.46 12 10

Double sheared

197

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -718.22 13 10

198

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -727.16 11 9

5x5 Sarcin-Ricin with intercalated A; G-bulge

199

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -744.28 14 11

200

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -747.55 9.5 9

Triple sheared

201

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -761.65 17 16

202

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -770.29 12 11

Tandem non-canonical cWW pairs

203

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -783.13 12 11

204

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -790.36 11 10

205

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -796.33 12 10

206

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -802.19 12 10

207

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -807.23 12.5 10

208

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -830.90 11 10

tSH-tHW

209

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -836.63 12 11

Reverse kink-turn related

210

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -869.69 10 9

UAA/GAN variation

211

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -874.74 10 8

212

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -908.10 14 11

213

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -943.19 11 10

214

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -945.63 11 9

Double sheared

215

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -956.27 12 10

UAA/GAN related

216

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -972.52 13.5 12

217

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -975.29 11 10

Tandem non-canonical cWW pairs

218

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -983.92 14 12

Other IL

219

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -984.56 12 10

220

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -996.95 13 11

221

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -997.25 11 10

222

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -999.02 12 11

Tandem non-canonical cWW pairs

223

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -1060.70 11.5 10

224

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -1061.25 11 10

225

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -1071.40 12.5 11

Intercalated tWH

226

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -1076.73 11 9

227

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -1118.81 11 10

228

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1237.27 13 12

229

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -1303.73 11 10

180 degree turn

230

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1346.33 12 10

231

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -1498.52 12 10

232

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -1565.05 13 11

Receptor of 11-nt loop-receptor motif

233

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -1588.65 13 11

Receptor of 11-nt loop-receptor motif

234

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1712.56 13 12

235

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -2033.98 12 12

236

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -2262.92 12 11

237

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -2270.27 13 11.5

238

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -2274.64 12 11

Isolated non-canonical cWW pair

239

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -2286.74 12 11

240

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -2810.63 13 11

241

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -2865.49 13 12

Isolated non-canonical cWW pair

242

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -3666.87 14 13

Kink-turn related

243

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -4194.34 20 19

244

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4371.47 15 13

245

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4381.82 17 16

246

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4419.30 16 14

247

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -4424.88 13 11

248

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -4514.11 11 10

249

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -4521.54 13 11

250

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -4536.56 12 11.5

251

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -4542.64 13 11

252

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -4563.36 13 11

253

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -4565.80 15 12

254

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -4641.40 17 14

255

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -4681.01 12 11

Vitamin B12 Aptamer

256

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -4727.53 12 11

257

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4731.23 15 12

258

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -4835.51 12 11

259

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -4891.11 14 12

260

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -4965.80 14 11

261

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -4968.15 13 10

262

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -4996.00 17 14

263

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -5006.20 14 12

Reverse kink-turn related

264

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -5041.94 11 10

265

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5138.16 13 11

266

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5176.70 11 10

267

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5181.17 16 14

268

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5184.17 15 12

269

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5186.00 11.5 11

270

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5186.29 14 12

271

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5194.10 15 13.5

Part of G-quadruplex

272

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5240.60 17 15

Pseudoknot

273

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5271.76 12 10

Kink-turn related

274

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5288.89 13 11.5

275

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5331.90 11.5 10

276

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5353.60 13 11.5

277

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -5356.32 13 11

278

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -5363.67 11 10

cWH basepair with bulged bases

279

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -5364.98 14 11

280

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -5445.58 13 11

281

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -5503.00 13 11

282

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5588.24 13 11

283

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5607.41 14 13

284

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -5615.18 11 10.5

285

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5615.77 13 11

286

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -5638.71 12 11

287

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -5724.24 11 11

288

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5761.01 13 12

289

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -5821.50 13 11

290

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5849.04 14 13

291

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5855.41 15 13

292

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -5874.86 14 12

293

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5968.30 12 11

294

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5983.09 12 10.5

295

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6115.52 13 12

296

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6205.03 13 12

297

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6209.21 14 12

298

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6235.07 13 11

299

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -6385.73 13 12

300

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -6407.10 12 11

301

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -6426.54 13 11

302

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6438.37 10.5 9

Kink-turn

303

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6457.25 13 12

Minor groove platform

304

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6459.97 12 11

305

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6573.79 12 10

306

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6734.37 15 12.5

Major groove intercalation

307

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -6829.99 13 11

Symmetric double minor groove platform

308

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -6877.15 12 11

309

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6890.52 12 10.5

C-loop with bulged stacked A's

310

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6932.95 13 11

311

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7040.57 13 12

8-nt loop receptor

312

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7046.47 13 11

313

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7049.25 13 11

314

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7139.65 14 13

315

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -7144.66 13 11

316

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7241.01 13 12

317

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -7262.99 13 12

318

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -7296.47 12 10.5

319

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7305.87 13 11

320

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7441.92 13 11

321

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7505.14 12.5 11

SSU/LSU pseudoknot

322

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7623.80 13 11

323

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -7644.56 13 11

324

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -7647.37 13 11

325

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -7684.27 13 12

326

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7776.94 12 11

Major groove intercalation

327

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7777.44 14 12.5

328

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -7812.20 13 12

Isolated cWH basepair

329

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -7843.15 13 11

330

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -7974.81 13 11

331

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -8020.61 12 11

332

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -8089.89 13 12

333

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -8109.65 11 10

Isolated non-canonical cWW pair

334

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8378.12 14 11

335

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -8386.53 12 12

336

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8387.97 14 12

337

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8487.47 14 14

Major groove platform

338

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -8576.05 12 11

339

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8626.18 12 11

340

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -8813.15 12 10

341

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8829.76 12 12

C-loop

342

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8889.32 14 13

Multiple bulged bases

343

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9017.10 14 12

344

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9210.21 13 11

345

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9342.23 11 11

346

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9388.97 15 13

347

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9446.96 12.5 11

Minor groove platform

348

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9522.34 13 11

349

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9534.67 12 10

350

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9541.34 12 10

351

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9541.42 13 12

Multiple bulged bases

352

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9573.03 12 11

353

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -9584.66 13 12

354

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9596.34 12 12

Isolated non-canonical cWW pair

355

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9602.31 12 11

356

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -9602.94 13 11

357

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9605.07 12 12

Decoding loop related

358

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -9649.30 13 13

359

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9838.91 13.5 13

Bulged stacked bases

360

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 14

Single bulged G

361

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 14 13

362

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Major groove platform with intercalation

363

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 12 12

C-loop

364

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 14

365

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 15 14

366

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 13 13

Major groove platform with intercalated tWH

367

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 13

Minor groove platform

368

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 14

369

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 15 12

370

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13.5 13

371

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 13 11

372

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 14

Single stack bend

373

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 13 13

Isolated non-canonical cWW pair

374

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 13 11.5

Left turn

375

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 14

Single bulged A

376

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

Stack and bulge

377

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 13

378

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 14 13

379

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 14 13

Multiple bulged bases

380

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 13 12

Isolated cWS basepair

381

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 13 12

Isolated non-canonical cWW contact

382

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 13

383

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 13 12

Minor groove platform

384

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 13 13

Major groove platform

385

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 13 13

Major groove platform; stack outside cWW

386

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 14 13

Minor groove platform

387

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13.5 13

388

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 12.5 12

Isolated non-canonical cWW pair

389

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

390

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 15 15

Single bulged C

391

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 15

392

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Major groove intercalation

393

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 13 12

Isolated tWW turn

394

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 12 12

Major groove minor groove platform; mini C-loop

395

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 15 13

396

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 12

397

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 13

398

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 13

399

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -9999.00 12 11.5

Major groove minor groove platform with intercalation; mini C-loop

400

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 13

Intercalated cWS

401

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 12 12

Multiple bulged bases

402

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 14 11

403

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 12 11

404

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 12 12

405

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 13 12.5

Multiple bulged bases

406

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 13 12

Isolated tHS basepair with bulges

407

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 14

Single bulged U

408

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 14 13

Single stack bend

409

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 14.5 14

410

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Minor groove platform, major groove intercalation

411

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 14 12

Coloring options: