RNA 3D Hub

JAR3D Query RF00230-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00230 maps to these 12 chains: 4LCK|1|C, 4LCK|1|F, 4TZP|1|C, 4TZP|1|F, 4TZV|1|C, 4TZW|1|C, 4TZZ|1|C, 4TZZ|1|F, 4TZZ|1|I, 4TZZ|1|L, 6PMO|1|A, 6POM|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 5 Internal loop

Column numbers: 36-45, 118-126 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    UAUU-UCCCU*AAAG-AUAU    2

    
    UAGU-GUUCG*CAAC--AUA    2

    
    AUG---AAAG*CGGA--CAU    2

    
    GUCUUCUUGC*GUAUAGAAU    1

    
    AAUU-CGAUU*AAAUUAGAG    1

    
    UAGC-CCAGA*UUGCUGGUA    1

    
    AGAU-UUUAU*AUUG-AUUU    1

    
    AUUG-GAGAC*GGUG-CUAU    1

    
    AUUU-GAUAC*GAUA-AAAU    1

    
    CACC-CUGCU*UGAA-AGCG    1

    
    CAUAUUUUGA*CAAA--AUC    1

    
    GAUUUUGAAA*UUUC--AGC    1

    
    GGCCCACUCC*GGAG--GCU    1

    
    UAGA-ACUGU*UCAG-UGCG    1

    
    UCAU-CGAUU*AUAG-AUGA    1

    
    AGAA-ACGUC*AUAG--UUA    1

    
    AUUA-AACUU*AAGA--GGU    1

    
    UAUA-UCCCU*AUAU--ACA    1

    
    UAUC-UCACU*AAAG--AUA    1

    
    UCGA-UUUCU*AGAA--CGA    1

    
    UGUU-UCCCU*AAAA--ACA    1

    
    UUAU-UCUUA*AGAU--AAG    1

    
    UUGU-GAAGC*GUUC--ACG    1

    
    ACCC-CUUAU*AAGG--AA-    1

    
    AUC--CAUGC*GUCA--UAU    1

    
    AUG--AAAUC*GAGG--AAG    1

    
    CAU--CGAUU*AUAG--AUG    1

    
    GAU--ACACA*UGGU--GAC    1

    
    UAC--UAUAA*GGCG--GUA    1

    
    UUU--GAUGU*AAUA--UGA    1

    
    AAA---UUAU*AUGA--UUU    1

    
    ACG---GAAA*UGGA--ACU    1

    
    UAU---GUGU*AUAA--GUA    1

    
    AAU---GAAA*UUGA---UA    1

    
    AAU---UCGA*UUUG---AG    1

    
    AGG---UAUC*GAUA---UU    1

    
    CAG---AUUG*CAAU---GG    1

    
    GAA---ACCA*UAGG---UC    1

    
    GAA---UCGA*UUAG---AA    1

    
    UA----UGGA*UGAA--GUC    1

    
    UGA--UUUGU*AAA----CA    1

    
    UUU---AUUU*AAAU---AA    1

    
    AC----AAAC*GUGG---CA    1

    
    GC----AAGA*UCAA---AC    1

    
    UU----UUGA*UUGG---AA    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

6.25 -132.77 10.5 8

2

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

4.17 -168.29 8 6

3

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

4.17 -168.59 10 8

Kink-turn

4

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

2.08 -106.08 9 7

5

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

2.08 -161.54 9 7

6

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

2.08 -194.13 10 7

tSH-tHW-tWH-tHS

7

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

2.08 -233.14 9 7

Quadruple sheared

8

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -95.35 10 8

9

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -102.73 9.5 7

10

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -107.49 9 7

11

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -112.67 11 8

12

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -116.99 11 8

13

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -117.54 10 8

14

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -118.80 10 8

tSH-tHW-tHH-tHS

15

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -120.02 14 11

16

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -120.59 10 8

17

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -121.46 11 8

18

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -122.43 12 10

19

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -123.42 9 7

20

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -125.00 9.5 7

21

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -125.86 10 7

Kink-turn related

22

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -126.56 11 9

23

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -127.22 10 7

24

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -127.71 10 7

8x6 Sarcin-Ricin with inserted A; G-bulge

25

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -128.64 9 6

8x7 Sarcin-Ricin; G-bulge

26

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -129.29 11 8

27

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -130.29 10 7

28

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -130.49 10 7

8x7 Sarcin-Ricin; G-bulge

29

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -131.05 13 10

30

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -131.73 10 7

31

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -131.97 11 7.5

32

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -132.75 11 9

33

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -132.79 10 7

34

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -134.58 12 9

35

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -134.64 10 8

36

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -135.39 10 7

37

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -135.60 11 8

38

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -135.72 10 7

7x7 Sarcin-Ricin with intercalated A; G-bulge

39

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -135.89 9 6

40

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -135.93 10 7

tWH-tWH-tHW-tHW

41

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -136.67 11 9

42

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -137.07 11 9

43

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -139.55 12 10

Pseudoknot

44

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -141.28 9 6

Kink-turn

45

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -141.71 9.5 7

46

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -143.01 11 9

10x8 Sarcin-Ricin; G-bulge

47

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -143.92 11 9

48

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -144.47 11 8

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

49

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -144.63 11 7

Kink-turn

50

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -144.67 11 9

51

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -144.97 9.5 8

Kink-turn related

52

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -146.91 11 8

53

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -147.20 9 8

54

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -148.08 11 8.5

55

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -148.63 9 7

56

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -148.71 12 10

57

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -148.79 9 7

Kink-turn

58

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -149.64 9 6

Kink-turn with non-sequential stacking

59

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -150.15 10 7

60

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -151.43 10 8

Reverse turn

61

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -152.15 10 7

8x6 Sarcin-Ricin with bulged A; G-bulge

62

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -152.68 9 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

63

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -153.69 11 8

64

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -154.60 9 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

65

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -155.28 11 9

66

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -155.45 10 8

67

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -157.51 12 9

68

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -159.15 12 9

69

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -159.35 9 7

70

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -160.01 9 7

Triple sheared with non-canonical cWW

71

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -160.89 10 7.5

72

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -161.76 11 9

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

73

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -163.25 12 9

74

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -165.26 9.5 7

Kink-turn with embedded cWW pair

75

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -165.30 9 6.5

tHW-tHW cross-strand stack

76

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -165.42 12 8

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

77

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -165.44 11 8

78

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -165.84 10 7.5

79

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -167.68 9 7

80

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -167.80 10 7.5

Kink-turn

81

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -168.46 8 7

7x6 Sarcin-Ricin; G-bulge

82

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -169.19 12 9

83

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -170.27 10 7

84

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -170.59 10 7

tSH-tHS-tHW

85

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -171.97 11 8

86

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -172.72 9 7

87

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -172.92 9 7

Double sheared; A in syn; two near cWW pairs

88

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -173.85 10 8

89

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -174.75 9 7

90

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -176.42 9 6

91

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -177.18 10 7

tSH-tSH-tHH-tHS

92

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -177.44 11 8

93

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -177.55 11 8

Other IL

94

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -177.82 12 9

95

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -177.89 11 9

96

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -180.90 13 10

97

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -181.45 9 7

Kink-turn related

98

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -181.78 10 8

99

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -182.26 12 9

100

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -182.83 8 6

6x5 Sarcin-Ricin; G-bulge

101

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -183.62 14 12

102

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -184.87 10 8

103

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -185.19 11 8

104

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -187.57 10 7

Minor groove platform related

105

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -188.31 10 7

106

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -188.38 9 8

Sarcin-Ricin target in LSU H95; G-bulge

107

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -188.38 10 8

108

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -188.52 11 8

109

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -191.49 9.5 7

Other IL

110

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -191.89 11 8

111

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -192.86 9 7

Kink-turn

112

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -193.53 10 7

113

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -194.18 9 7

114

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -194.77 11 8

115

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -196.06 9 7

tSH-tWH-tHS-cWW

116

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -196.13 10 8

Bacterial 5S Loop E

117

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -196.74 10 8

118

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -197.95 13 11

119

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -202.12 10 7

120

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -202.96 10 8

Kink-turn

121

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -203.10 8 6

Kink-turn

122

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -203.19 11 8

Part of G-quadruplex

123

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -203.48 10 8.5

124

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -203.55 9 7

UAA/GAN related

125

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -204.02 9 6

Kink-turn

126

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -204.51 10 8

127

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -204.63 10 8

tSH-tHW

128

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -207.24 11 9

129

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -208.37 11 8

130

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -211.18 11 9

131

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -212.76 9 7

132

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -214.05 12 9

133

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -216.41 9.5 8

Triple sheared related

134

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -216.63 9 7

135

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -216.98 9 7

136

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -217.57 8 6

UAA/GAN with extra cWW

137

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -220.52 14 11

138

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -221.13 10 7.5

139

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -222.15 10 8

UAA/GAN with extra stack

140

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -222.71 15.5 13

Kink-turn

141

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -222.80 12 9.5

142

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -223.96 11 8

Kink-turn

143

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -231.13 10 8

Reverse kink-turn

144

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -233.34 9 7.5

UAA/GAN with tHH

145

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -234.12 10 8

146

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -234.35 10 7

tSH-tHH-tHS

147

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -234.72 10 8

148

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -234.98 10 7

Kink-turn

149

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -239.60 9 7

150

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -239.84 11 8

Kink-turn related

151

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -243.42 10 8

152

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -245.20 10 8

153

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -247.59 16 14

154

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -247.85 9 6.5

155

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -252.18 10 7

156

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -252.54 10 7

157

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -255.63 10 7

158

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -256.67 13 10

159

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -267.06 10 8

160

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -269.57 10 8

161

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -270.76 9.5 8

162

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -272.79 9 8

Pseudoknot

163

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -277.11 11 9

164

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -279.17 10 7

165

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -284.07 10 7

Kink-turn from U4

166

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -284.84 10 8

167

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -285.12 12 10

168

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -289.13 14 12

Pseudoknot

169

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -292.88 9.5 8

Intercalated tWH

170

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -293.77 17.5 15

171

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -294.15 16 13

172

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -295.92 10 8

173

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -298.16 10 7.5

174

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -302.45 17 14

175

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -308.46 10 8

176

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -308.80 11 8

177

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -309.10 11 9

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

178

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -312.89 9.5 7

180 degree turn

179

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -314.67 11 9

180

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -315.45 10.5 9

181

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -319.86 9 8

182

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -321.28 9 7

183

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -324.74 10 7

cWH basepair and non-canonical AC

184

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -331.83 10 7

tSH-tHW

185

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -331.97 15 13

186

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -333.63 18 16

187

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -346.23 11 8.5

Reverse kink-turn related

188

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -353.02 10 8

Triple sheared

189

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -355.44 10 8

190

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -362.75 10 8

191

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -373.16 19 17

192

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -373.62 10 8

193

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -374.22 9 8

AAA cross-strand stack

194

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -374.58 11 8

195

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -376.86 19 17

196

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -380.38 10 8

Receptor of 11-nt loop-receptor motif

197

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -386.81 10 7

Receptor of 11-nt loop-receptor motif

198

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -387.15 14 12

Kink-turn related

199

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -388.27 7.5 6

UAA/GAN

200

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -388.74 11 8.5

Decoding loop related

201

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -390.70 11 8.5

202

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -396.58 9 7

203

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -397.53 9 7

Double sheared with non-canonical cWW

204

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -412.57 9 7

UAA/GAN

205

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -413.20 8 6

Triple non-canonical cWW pairs

206

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -414.89 16 14

207

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -428.86 11 8

208

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -437.44 10 8

209

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -438.84 9 8

210

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -442.39 19.5 17

211

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -443.70 15 14

212

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -443.92 9 7

tSH-tWH-tHS

213

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -455.50 9 7

5x5 Sarcin-Ricin with intercalated A; G-bulge

214

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -458.69 10 8

Double sheared

215

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -464.01 14 12

Kink-turn related

216

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -487.85 8 7

Triple sheared

217

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -488.94 9 7

218

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -490.62 10 9

219

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -498.01 9 7

Tandem non-canonical cWW pairs

220

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -500.72 9 7

221

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -506.43 10.5 8.5

222

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -514.00 10 8

223

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -517.10 9 7

tSH-tHW

224

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -528.48 11 9

225

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -542.78 10 9

226

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -543.13 10 8

227

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -544.64 10 8

228

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -546.55 10 9

Other IL

229

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -546.93 8.5 7

UAA/GAN variation

230

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -554.40 10 8

231

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -554.88 12 10

232

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -557.20 12 10

233

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -565.64 11 9

Vitamin B12 Aptamer

234

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -571.32 12 10

235

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -571.75 11 9

236

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -573.64 11.5 10

237

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -578.49 12 9

Reverse kink-turn related

238

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -586.61 12 9

239

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -592.17 8 7

240

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -609.07 13.5 11

241

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -609.81 11 9

242

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -612.78 9 8

243

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -619.31 12 10

244

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -624.04 10 9

245

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -624.68 10 7

UAA/GAN related

246

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -627.23 9 8

Tandem non-canonical cWW pairs

247

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -629.03 10 8.5

cWH basepair with bulged bases

248

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -630.54 10 8

249

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -633.74 8 7

Double sheared

250

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -642.46 10 8.5

251

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -646.95 9 8

Tandem non-canonical cWW pairs

252

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -649.59 9 8

253

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -652.46 10 8.5

254

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -658.22 11 9

255

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -658.52 11 8

256

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -666.40 9 8

Isolated non-canonical cWW pair

257

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -704.95 10 8

258

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -715.15 11 8

259

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -731.94 10 8.5

260

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -746.28 11 9

261

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -757.18 10 9

262

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -782.63 11 9

263

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -810.70 10 8

264

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -840.75 10 8

265

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -845.28 10 8

266

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -874.89 9.5 9

Isolated non-canonical cWW pair

267

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -875.35 12 10

268

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -878.63 10 8

269

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -906.00 11 9

270

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -906.39 10 8

271

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -949.70 10 9

272

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -963.24 13 10

273

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -968.76 10 8.5

274

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -972.22 10 8

275

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -998.13 9 8

Isolated non-canonical cWW pair

276

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -998.45 10 9

277

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -1010.64 10.5 9

278

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -1042.64 10 8

279

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -1115.73 10 9

280

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -1118.72 10 8

281

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1135.69 9 8

282

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -1210.53 9 8

283

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -1219.61 9.5 8

284

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -1222.13 10 8

285

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -1261.96 10 8

286

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1290.04 10 8.5

287

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -1305.94 10 8

288

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1308.45 9 8

289

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -1328.41 9 8

290

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -1347.51 11 9

291

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -1348.13 10 9

Isolated non-canonical cWW pair

292

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -1356.16 9 8

293

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -1357.85 19 18

294

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -1411.28 11 9

295

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -1464.42 10 9

Decoding loop related

296

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -1468.21 10 8

297

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -1515.37 10 8

298

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -1524.37 14 12

299

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -1537.60 14 12

300

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -1689.11 10 9

Isolated cWH basepair

301

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -1818.20 10 8

302

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -1988.40 12 9

303

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -2009.25 10 8

304

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -2044.47 9 9

Isolated non-canonical cWW pair

305

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -2085.19 10 9

Isolated tWW turn

306

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -2085.25 10 9

Isolated cWS basepair

307

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -2098.13 10 9

Isolated non-canonical cWW contact

308

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -2114.83 10.5 9

Isolated tHS basepair with bulges

309

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -2693.71 10.5 8

Minor groove platform

310

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -2901.96 10 8

Major groove minor groove platform with intercalation; mini C-loop

311

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -3117.38 16 15

312

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -3129.59 16 13

313

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -3835.36 9 7

Symmetric double minor groove platform

314

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -3963.19 10 8

Kink-turn

315

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -4177.70 11.5 9

Kink-turn related

316

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -4425.01 10 8

317

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4504.93 16 14

318

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4741.28 15 13

319

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -4976.89 12 10

320

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -4978.76 12 9.5

321

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -4999.43 12 9

322

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5042.29 13 11

323

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5061.34 12 10

324

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5066.36 13 11

325

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5105.64 13 10

326

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5115.97 14 12

Pseudoknot

327

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5241.04 12 10

328

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5241.84 13 12

Part of G-quadruplex

329

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5322.07 14 12

330

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5463.26 12 10

331

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -5566.59 10 8

332

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -5574.61 10 8

333

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5604.65 11 10

334

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5682.31 12 10

335

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -5682.32 9 8

336

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -5688.69 11 9

8-nt loop receptor

337

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5725.25 12 10

338

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -5758.73 11 8

339

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5868.05 12.5 10

340

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5874.18 11 10

341

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -5897.60 10 8

Stack and bulge

342

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -5903.72 10 9

Multiple bulged bases

343

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -6004.74 11.5 10

344

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -6020.65 10 10

Isolated non-canonical cWW pair

345

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6041.52 11 9

346

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6050.49 11 10

347

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6126.09 12 10

348

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6286.93 11 9

Minor groove platform

349

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -6304.10 10 8

350

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6324.51 11 9

351

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6436.73 11 9

352

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6544.29 11 9

Major groove intercalation

353

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6716.90 10 8

C-loop with bulged stacked A's

354

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -6929.74 11 9

355

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -7036.58 10 9

C-loop

356

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7081.15 11 9

357

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -7090.05 11 8.5

358

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7271.48 11 9

359

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7325.39 10 9

SSU/LSU pseudoknot

360

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -7425.18 12 9.5

361

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7428.18 10 9

362

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -7492.97 11 8.5

Multiple bulged bases

363

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -7538.43 10 8

364

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7551.92 11 9

365

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7594.27 11 9

Major groove intercalation

366

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -7877.25 11 9

367

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7964.67 10 9

368

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8173.20 11 9

369

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -8174.40 10 8.5

370

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8246.27 11 11

Major groove platform

371

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -8457.50 10 9

Minor groove platform

372

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -8633.93 9.5 9

373

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8635.26 10 9.5

Multiple bulged bases

374

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -8637.46 10 8

375

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -8653.18 10 9

Multiple bulged bases

376

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9564.77 11 9.5

Bulged stacked bases

377

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged G

378

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 10

379

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

Major groove platform with intercalation

380

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 10 9

C-loop

381

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

382

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 11 9

Major groove platform with intercalated tWH

383

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 10

Minor groove platform

384

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 11

385

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 10

386

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 9

387

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single stack bend

388

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 11 9

Left turn

389

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10.5 11

Single bulged A

390

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

391

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 10.5 9

392

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 10

Multiple bulged bases

393

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 9

394

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 10

Major groove platform

395

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 10 10

Major groove platform; stack outside cWW

396

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 10

Minor groove platform

397

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

398

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

399

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged C

400

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 11

401

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

Major groove intercalation

402

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 9

Major groove minor groove platform; mini C-loop

403

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 10

404

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 9

405

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 10

406

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 10

407

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

Intercalated cWS

408

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10.5 11

Single bulged U

409

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

Single stack bend

410

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 9

411

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9.5

Minor groove platform, major groove intercalation

Coloring options: