RNA 3D Hub

JAR3D Query RF00230-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00230 maps to these 12 chains: 4LCK|1|C, 4LCK|1|F, 4TZP|1|C, 4TZP|1|F, 4TZV|1|C, 4TZW|1|C, 4TZZ|1|C, 4TZZ|1|F, 4TZZ|1|I, 4TZZ|1|L, 6PMO|1|A, 6POM|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 1 Internal loop

Column numbers: 8-17, 147-152 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    CAUU-GA-AC*U-GGAG    2

    
    CGAU-GA-AU*A-GGAG    2

    
    A--------U*A----U    2

    
    CGUUUAA-GU*A-CGAG    1

    
    CUAU-GAUAA*U-UUAG    1

    
    UAGG-AU-UU*ACAGAG    1

    
    CAAU-AA-AG*U-GGAG    1

    
    CAAU-GA-AA*U-GGAG    1

    
    CAAU-GA-UA*U-GGAG    1

    
    CAGU-GA-UA*U-UUAG    1

    
    CAUC-AA-AC*G-UGCG    1

    
    CAUG-AA-AC*G-UGCG    1

    
    CAUU-GA-AG*C-UGAG    1

    
    CAUU-GA-CG*C-CGAG    1

    
    CAUU-GA-UU*A-GGAG    1

    
    CCGU-GA-AG*C-GGAG    1

    
    CCUU-GA-AG*U-GGAG    1

    
    CGAU-GA-AA*U-GGAG    1

    
    CGAU-GA-AG*C-UGAG    1

    
    CGAU-GA-AG*U-GGAG    1

    
    CGAU-GA-AU*U-GGAG    1

    
    CGAU-GA-GC*G-CGAG    1

    
    CGAU-GA-UA*U-GGAG    1

    
    CGCU-GA-AG*U-GGAG    1

    
    CGUU-GA-AA*U-AGAG    1

    
    CGUU-GA-AG*C-UGAG    1

    
    CGUU-GA-GA*U-UGAG    1

    
    CGUU-GA-UA*U-AGAG    1

    
    CGUU-GA-UA*U-GGAG    1

    
    CUAU-GA-AC*C-GGAG    1

    
    CUAU-GA-AG*C-AGAG    1

    
    CUGU-GA-AG*U-AGAG    1

    
    CUGU-GA-GA*U-GGAG    1

    
    CUUU-GA-AG*U-GGAG    1

    
    CUUU-GA-UG*C-UGAG    1

    
    UAGC-GA-CA*U-CGAG    1

    
    UGAU-GA-AA*U-GGAA    1

    
    UGAU-GA-AU*A-GGAG    1

    
    UGUU-GA-AG*U-GGAG    1

    
    UUGU-UC-GU*A-CUUA    1

    
    A-AA-CA-AC*G-UGAU    1

    
    U--------A*U----A    1

    
    U--------G*C----A    1

    
    U--------U*A----A    1

    
    Omitted sequenced and counts

    
    CG-------U*A-----    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

78.72 9.48 3 2

Kink-turn

2

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

72.34 -0.86 3 1

Kink-turn

3

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

72.34 -9.29 4 2

Kink-turn

4

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

46.81 -40.11 5 3

Kink-turn

5

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

25.53 -47.15 5 3

Kink-turn

6

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

23.40 -37.79 6 4

7

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

17.02 -44.51 7 5

8

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

12.77 -58.09 7 5

Kink-turn

9

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

12.77 -82.97 6 5

Kink-turn

10

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

10.64 -748.20 8 7

11

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

10.64 -786.60 7 7

Major groove intercalation

12

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

10.64 -788.06 9 7

Intercalated cWS

13

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

10.64 -838.18 8 7

14

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

10.64 -904.10 8 7

Single stack bend

15

Motif group IL_84476.1

Basepair signature:
cWW-cWW

10.64 -939.50 8 7

Multiple bulged bases

16

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

10.64 -948.32 7 6

Stack and bulge

17

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

10.64 -1086.28 8 8

Major groove platform

18

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

10.64 -1408.38 9 8

Single stack bend

19

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

10.64 -1412.14 9 8

20

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

10.64 -1434.80 8 8

Single bulged G

21

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

10.64 -1459.27 9 9

Single bulged C

22

Motif group IL_42771.1

Basepair signature:
cWW-cWW

10.64 -9564.95 8 8

Multiple bulged bases

23

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

8.51 -67.57 9 6

24

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

6.38 -73.73 6 5

Kink-turn with embedded cWW pair

25

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

4.26 -61.79 7 5

26

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

4.26 -62.99 7 5

27

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

4.26 -83.61 7 5

28

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

2.13 -60.03 5 4

Kink-turn

29

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

2.13 -62.89 6 5

tSH-tHS-tHW

30

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

2.13 -66.81 9 5

Reverse turn

31

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

2.13 -79.61 7 5

Kink-turn

32

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

2.13 -1416.34 8 8

Single bulged U

33

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

2.13 -1452.90 8 8

Single bulged A

34

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -67.03 7 5

35

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -68.28 5 4

36

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -68.42 6 4

6x5 Sarcin-Ricin; G-bulge

37

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -68.74 5 4

38

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -75.78 8 6

39

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -78.89 8 5

tHW-tHW cross-strand stack

40

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -79.49 9 7

41

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -89.32 8 5

42

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -89.41 7 5

43

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -91.82 8 6

44

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -92.34 8 7

45

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -93.77 7 4

46

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -95.86 7 6

Kink-turn

47

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -96.79 5 3

48

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -96.85 8 6

8x6 Sarcin-Ricin with inserted A; G-bulge

49

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -98.24 6 5

Reverse kink-turn

50

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -98.74 7 5

Other IL

51

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -100.29 7 5

Kink-turn with non-sequential stacking

52

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -101.42 8 7

53

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -101.77 4 3

Kink-turn from U4

54

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -101.80 8 5

55

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -101.84 10 7

56

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -102.27 6 5

57

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -102.72 9 6

58

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -102.73 7 5

UAA/GAN related

59

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -103.68 9 7

Kink-turn related

60

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -104.59 8 5

UAA/GAN with extra stack

61

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -105.03 9 7

62

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -105.51 11 8

63

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -105.91 8 7

64

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -106.43 8 6

65

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -108.87 9 7

66

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -109.02 9 7

67

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -110.08 7 5

68

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -110.18 9 6

69

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -110.40 7 6

70

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -111.59 7 5

71

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -112.59 7 6

72

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -113.40 10 7

73

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -113.51 10 7

74

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -115.00 9 7

75

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -115.72 8 7

76

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -117.25 7 5

77

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -118.50 9 6

Part of G-quadruplex

78

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -120.12 8 6

Kink-turn related

79

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -120.14 8 6

80

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -120.89 9 7

81

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -122.58 8 5

Triple sheared related

82

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -122.73 7 6

Vitamin B12 Aptamer

83

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -123.15 7 5

84

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -123.81 8 7

85

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -124.01 10 8

86

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -124.02 8 5

tSH-tHH-tHS

87

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -124.16 8 7

tSH-tHW

88

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -125.34 7 4

89

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -126.35 8 5

Double sheared; A in syn; two near cWW pairs

90

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -127.23 6 5

91

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -129.69 8 6

92

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -129.82 10 8

93

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -130.00 7 5

94

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -131.14 8 6

95

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -131.31 10 7

96

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -131.46 8 6

97

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -132.76 9 7

98

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -133.03 8 5

8x6 Sarcin-Ricin with bulged A; G-bulge

99

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -133.45 8 5

100

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -134.26 7 5

101

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -134.37 7 6

Kink-turn related

102

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -135.63 9 7

103

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -136.03 9 7

104

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -136.07 7 5

105

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -136.46 7 6

106

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -136.83 9 7

107

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -137.12 8 6

cWH basepair with bulged bases

108

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -137.55 7 6

109

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -137.58 8 6

110

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -137.71 9 7

111

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -138.20 8 5

tSH-tSH-tHH-tHS

112

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -138.88 9 7

113

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -139.69 12 8

114

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -139.89 7 6

Sarcin-Ricin target in LSU H95; G-bulge

115

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -140.25 9 7

116

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -140.69 8 6

UAA/GAN with tHH

117

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -140.87 8 7

Reverse kink-turn related

118

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -141.41 9 7

119

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -141.91 10 7

120

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -142.45 8 7

121

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -142.74 7 5

122

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -142.98 9 7

123

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -143.50 9 7

124

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -144.20 8 5

Other IL

125

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -144.77 9 6

8x6 Sarcin-Ricin with inserted Y; G-bulge

126

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -145.24 9 7

127

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -147.56 9 6

128

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -148.03 8 6

129

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -149.47 11 9

130

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -150.60 7 6

131

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -151.32 6 5

Kink-turn

132

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -152.06 9 7

133

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -152.96 9 6

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

134

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -153.09 10 7

tWH-tWH-tHW-tHW

135

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -154.40 9 8

136

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -155.00 7 6

137

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -156.69 9 6

138

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -157.05 9 7

139

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -157.30 9 6

Kink-turn related

140

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -160.01 8 6

Pseudoknot

141

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -160.05 10 7

Kink-turn related

142

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -160.97 9 8

10x8 Sarcin-Ricin; G-bulge

143

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -161.27 6 4

Kink-turn

144

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -161.44 9 7

145

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -161.75 7 6

7x6 Sarcin-Ricin; G-bulge

146

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -162.21 5 4

Triple sheared

147

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -163.21 11 9

148

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -163.88 11 8

149

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -167.09 7 5

UAA/GAN with extra cWW

150

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -167.15 11 8

151

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -167.25 11 10

Kink-turn related

152

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -167.28 8 7

153

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -167.54 10 9

154

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -167.82 5 4

AAA cross-strand stack

155

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -167.83 9 7

156

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -167.83 9 6

157

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -167.88 9 7

158

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -167.93 10 8

159

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -168.39 13 9

Pseudoknot

160

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -170.33 10 8

161

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -170.50 6 5

Triple sheared with non-canonical cWW

162

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -171.76 9 6

Intercalated tWH

163

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -172.32 11 9

164

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -174.17 6 5

165

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -174.25 11 9

166

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -174.47 9 6

Minor groove platform related

167

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -174.49 8 6

168

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -174.55 9 8

169

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -174.87 8 6

7x7 Sarcin-Ricin with intercalated A; G-bulge

170

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -176.35 7 5

171

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -176.47 9 8

172

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -176.64 7 5

180 degree turn

173

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -177.04 9 8

174

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -177.05 8 6

175

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -178.49 6 5

176

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -178.61 9 6

177

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -179.75 6 5

tSH-tHW

178

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -181.17 10 9

179

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -184.32 10 8

180

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -184.48 8 7

181

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -185.16 11 10

182

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -185.98 9 7

Reverse kink-turn related

183

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -186.20 7 5

184

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -186.45 7 6

185

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -186.69 10 8

186

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -188.02 10 8

tSH-tHW-tHH-tHS

187

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -188.44 11 7

188

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -190.19 10 8

189

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -190.45 13 11

190

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -191.63 8 7

8x7 Sarcin-Ricin; G-bulge

191

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -191.64 8 6

192

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -192.35 8 6

193

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -192.64 8 6

tSH-tWH-tHS-cWW

194

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -193.00 8 5

cWH basepair and non-canonical AC

195

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -193.47 7 6

tSH-tHW-tWH-tHS

196

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -193.63 9 6

197

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -196.60 10 6

198

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -198.19 7 5

199

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -198.46 8 5

200

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -200.32 12 10

Kink-turn

201

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -200.85 8 7

8x7 Sarcin-Ricin; G-bulge

202

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -202.72 8 6

203

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -203.08 14 14

204

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -203.63 6 5

205

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -204.63 10 8

206

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -205.08 9 6

207

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -205.13 9 8

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

208

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -206.27 6 5

209

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -206.98 9 7

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

210

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -209.21 6 5

UAA/GAN

211

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -209.70 10 7

212

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -210.26 9 7

213

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -211.58 7 5

214

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -212.27 8 6

215

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -212.43 6 4

Quadruple sheared

216

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -214.58 7 5

217

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -215.25 8 7

218

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -215.65 6 5

Double sheared with non-canonical cWW

219

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -216.02 10 7

220

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -216.95 12 9

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

221

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -217.34 7 5

Isolated non-canonical cWW pair

222

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -217.95 10 8

223

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -222.16 6 5

224

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -226.44 8 6

225

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -228.01 8 5

226

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -228.54 9 5

Decoding loop related

227

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -233.14 7 5

Triple non-canonical cWW pairs

228

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -234.29 11 10

229

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -234.42 13 10

230

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -235.66 8 5

231

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -237.42 6 5

UAA/GAN

232

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -237.86 10 7

233

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -237.95 10 7

234

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -239.46 6 5

235

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -239.53 14 12

236

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -239.92 9 6

237

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -242.17 4 4

Triple sheared

238

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -242.33 14 11

Pseudoknot

239

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -242.37 7 5

240

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -243.03 6 5

Double sheared

241

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -244.42 9 5

242

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -244.55 8 5

243

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -246.54 11 8

244

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -246.70 12 11

245

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -248.77 7 6

Receptor of 11-nt loop-receptor motif

246

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -250.10 7 6

Receptor of 11-nt loop-receptor motif

247

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -250.48 8 7

248

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -250.81 12 9

249

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -251.02 6 4

250

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -254.11 7 5

251

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -257.22 6 5

tSH-tWH-tHS

252

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -262.03 11 9

253

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -268.32 7 5

254

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -268.50 7 5

255

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -270.03 6 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

256

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -272.29 6 5

257

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -276.06 8 6

258

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -277.14 9 7

259

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -277.93 6 5

260

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -278.11 7 4

261

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -282.06 8 6

262

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -283.60 17 14

263

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -283.61 7 5

264

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -290.07 16 13

265

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -291.00 7 5

266

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -295.33 8 6

267

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -296.27 7 5

Tandem non-canonical cWW pairs

268

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -301.19 14 10

269

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -301.52 6 5

tSH-tHW

270

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -304.28 7 6

271

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -305.55 11 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

272

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -308.15 6 5

273

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -315.14 8 7

274

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -318.64 9 8

Bacterial 5S Loop E

275

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -319.72 9 7

276

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -320.53 8 7

277

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -320.69 6 5

UAA/GAN variation

278

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -322.25 9 6

279

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -323.09 14 12

280

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -329.11 7 5

281

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -330.11 10 8

282

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -330.91 9 6

283

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -332.20 7 5

284

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -332.23 9 8

285

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -335.85 8 6

286

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -337.12 9 8

287

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -341.79 5 4

UAA/GAN related

288

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -344.61 6 5

Tandem non-canonical cWW pairs

289

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -344.75 7 6

Multiple bulged bases

290

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -346.86 12 9

291

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -350.24 10 8

292

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -351.24 9 8

293

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -351.35 6 5

294

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -352.85 13 12

295

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -353.93 10 8

296

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -354.68 6 6

297

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -360.03 8 7

298

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -362.62 7 5

299

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -364.75 8 6

Major groove minor groove platform with intercalation; mini C-loop

300

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -365.38 5 5

Double sheared

301

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -370.14 9 7

302

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -370.16 10 8

303

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -370.91 9 7

304

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -373.08 7 5

305

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -378.16 6 5

306

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -379.37 7 5

307

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -383.02 12 9

308

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -384.00 12 9

309

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -385.03 7 5

310

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -386.83 9 7

311

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -387.18 7 6

312

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -388.34 10 8

313

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -390.11 7 5

314

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -391.47 9 8

Other IL

315

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -391.93 7 6

Isolated non-canonical cWW pair

316

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -395.18 10 10

Pseudoknot

317

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -396.71 11 10

318

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -398.89 8 7

Major groove intercalation

319

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -400.02 18 16

320

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -400.38 17 16

321

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -402.23 8 5

322

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -402.32 8 6

Minor groove platform

323

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -403.57 10 8

Minor groove platform

324

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -406.15 11 8

325

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -407.13 7 5

326

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -416.92 19 17

327

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -423.49 10 7

328

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -424.10 8 6

329

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -424.39 8 7

330

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -430.42 8 6

331

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -432.00 8 6

Isolated non-canonical cWW pair

332

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -435.94 7 6

Tandem non-canonical cWW pairs

333

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -436.48 21 18

334

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -438.52 9 7

335

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -442.08 8 7

336

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -443.83 8 7

337

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -444.82 10 9

338

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -449.29 7 6

339

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -457.55 8 6

340

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -460.34 8 7

341

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -466.33 7 5

342

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -466.40 7 7

343

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -467.03 16 13

344

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -471.60 7 6

SSU/LSU pseudoknot

345

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -479.53 7 6

346

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -479.93 8 7

347

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -490.22 7 6

348

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -497.46 10 8

349

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -497.47 7 5

350

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -500.18 9 7

Major groove intercalation

351

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -502.31 7 6

352

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -509.13 7 6

Isolated non-canonical cWW pair

353

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -520.61 7 6

Isolated non-canonical cWW contact

354

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -524.17 15 12

Kink-turn related

355

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -525.54 7 6

Isolated tWW turn

356

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -532.14 7 6

Isolated tHS basepair with bulges

357

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -540.70 7 6

Decoding loop related

358

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -542.68 10 8

359

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -551.95 7 6

Isolated cWS basepair

360

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -552.64 7 6

Isolated cWH basepair

361

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -567.53 7 6

Isolated non-canonical cWW pair

362

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -572.69 7 6

363

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -589.63 7 6

Multiple bulged bases

364

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -657.03 8 7

Symmetric double minor groove platform

365

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -686.12 10 7

8-nt loop receptor

366

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -689.63 9 8

Bulged stacked bases

367

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -724.14 8 6

Left turn

368

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -745.49 9 7

369

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -749.85 9 6

370

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -755.26 7 7

371

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -764.90 9 7

372

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -774.99 8 7

373

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -805.34 7 7

Major groove platform with intercalated tWH

374

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -820.76 8 7

375

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -826.11 8 7

376

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -828.57 9 7

377

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -835.70 7 6

378

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -842.90 9 7

379

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -859.51 8 6

Major groove minor groove platform; mini C-loop

380

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -870.93 8 7

381

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -871.62 8 7

Minor groove platform

382

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -874.51 8 7

Minor groove platform, major groove intercalation

383

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -897.05 8 7

Major groove platform

384

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -905.63 7 7

Major groove platform with intercalation

385

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -909.97 8 7

Minor groove platform

386

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -1018.31 9 7

Minor groove platform

387

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -1081.68 9 9

388

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -1118.96 8 8

Isolated non-canonical cWW pair

389

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -1126.08 8 5

C-loop with bulged stacked A's

390

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -1282.70 8 6

391

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -3819.85 13 10

392

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -3859.09 14 11

393

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4086.39 14 13

394

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4230.63 9 8

395

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -4462.33 11 9

Part of G-quadruplex

396

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4768.92 11 8

397

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -4796.91 8 8

398

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -4799.27 8 8

399

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -7267.26 10 8

400

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8565.63 8 7

C-loop

401

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9332.09 7 6

Multiple bulged bases

402

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9346.47 8 6

403

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9364.02 7 7

Major groove platform; stack outside cWW

404

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9603.28 9 8

405

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9630.38 10 9

406

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 9 7

C-loop

407

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 18 15

408

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 14 13

409

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 16 16

410

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 7

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 8 6

Coloring options: