RNA 3D Hub

JAR3D Query RF00230-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00230 maps to these 12 chains: 4LCK|1|C, 4LCK|1|F, 4TZP|1|C, 4TZP|1|F, 4TZV|1|C, 4TZW|1|C, 4TZZ|1|C, 4TZZ|1|F, 4TZZ|1|I, 4TZZ|1|L, 6PMO|1|A, 6POM|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 16 Internal loop

Column numbers: 517-523, 549-550 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GUGGUAC*UC   26

    
    GUGGAAC*UC    6

    
    GUGGCAC*UC    4

    
    GUGGCAA*UC    3

    
    GUGGUAA*UC    3

    
    GUGGUAC*CC    3

    
    GUGGCAC*CC    2

    
    GUGGUAU*UC    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

31.25 -9.75 3 3

2

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

6.25 -17.05 7 3

3

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -20.39 4 3

4

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -31.04 4 3

Major groove intercalation

5

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -34.80 7 4

6

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -35.85 4 3

7

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -42.65 4 3

8

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -45.15 7 4

9

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -45.74 7 4

10

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -48.37 6 4

11

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -50.25 6 3

SSU/LSU pseudoknot

12

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -55.03 6 4

13

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -56.34 8 4

Major groove intercalation

14

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -63.69 9 5

15

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -67.23 5 3

16

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -69.22 5 4

17

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -70.54 6 5

Minor groove platform

18

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -70.79 8 5

19

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -76.41 7 5

Vitamin B12 Aptamer

20

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -76.75 3 2

Left turn

21

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -78.52 6 5

Kink-turn related

22

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -79.14 9 6

23

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -82.07 9 5

24

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -83.77 4 3

25

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -84.74 6 2

Multiple bulged bases

26

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -85.22 7 4

27

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -85.71 8 4

28

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -86.64 6 4

29

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -87.65 5 3

30

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -88.51 9 5

31

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -89.30 7 6

cWH basepair with bulged bases

32

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -91.68 8 5

33

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -93.95 5 5

34

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -93.99 6 5

35

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -94.49 6 3

36

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -94.54 7 6

37

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -95.83 9 6

38

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -97.94 9 6

39

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -98.40 9 6

40

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -98.48 9 6

41

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -98.49 9 6

Reverse kink-turn related

42

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -99.14 7 5

43

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -100.12 8 4

44

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -102.97 9 7

45

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -107.63 6 4

46

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -109.32 6 3

47

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -114.72 8 6

48

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -115.25 9 6

49

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -115.43 7 5

50

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -115.50 4 3

Major groove minor groove platform with intercalation; mini C-loop

51

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -118.32 9 6

52

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -119.32 8 8

53

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -119.71 9 6

54

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -125.10 8 5

55

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -126.13 9 6

56

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -128.16 6 3

Bulged stacked bases

57

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -130.93 10 7

58

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -133.39 5 4

59

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -133.67 7 3

60

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -136.13 5 4

61

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -136.38 9 7

62

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -136.93 7 5

180 degree turn

63

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -137.21 9 7

64

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -137.22 5 4

65

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -137.50 8 5

66

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -138.44 6 4

67

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -138.55 8 5

68

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -139.03 5 3

69

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -140.68 6 5

70

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -144.06 9 6

71

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -144.85 9 6

72

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -146.61 4 3

73

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -146.82 8 6

Pseudoknot

74

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -147.57 10 7

75

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -148.93 10 7

Reverse turn

76

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -150.74 8 5

Kink-turn related

77

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -152.65 7 5

78

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -152.92 7 6

79

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -154.21 7 4

80

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -154.60 8 7

81

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -155.24 7 5

82

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -157.62 9 5

Kink-turn

83

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -158.33 5 2

84

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -159.37 9 5

85

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -161.24 10 7

Reverse kink-turn related

86

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -163.51 8 5

87

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -163.92 6 3

Isolated non-canonical cWW pair

88

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -165.94 9 6

89

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -166.04 11 8

Pseudoknot

90

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -166.22 4 4

91

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -166.35 10 7

92

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -166.57 10 7

93

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -166.97 5 3

94

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -167.46 6 4

95

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -168.05 4 4

96

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -168.22 10 8

97

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -170.89 7 7

98

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -171.67 10 8

99

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -172.13 7 5

100

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -176.92 11 8

101

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -178.71 8 6

Intercalated tWH

102

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -179.33 12 8

103

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -179.88 10 8

104

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -180.94 5 5

105

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -182.21 9 6

106

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -182.69 7 6

107

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -182.69 8 4

108

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -182.91 6 4

109

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -183.13 4 3

Major groove intercalation

110

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -184.54 6 5

111

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -185.51 7 4

112

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -186.69 9 5

113

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -187.92 9 7

114

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -189.74 9 7

tSH-tHW

115

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -190.30 8 8

116

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -192.37 9 7

117

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -196.16 9 9

118

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -196.49 7 4

119

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -196.70 6 6

UAA/GAN related

120

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -199.13 5 3

Minor groove platform

121

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -199.77 8 6

Kink-turn

122

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -200.11 8 6

123

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -200.97 7 4

124

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -201.09 8 7

125

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -201.17 12 9

126

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -204.57 7 5

127

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -204.80 7 5

128

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -205.13 9 6

Reverse kink-turn

129

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -205.94 9 8

Minor groove platform related

130

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -207.81 5 3

Major groove minor groove platform; mini C-loop

131

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -207.91 7 4

132

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -208.70 8 6

133

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -210.04 12 9

134

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -210.54 6 4

135

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -211.11 5 3

136

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -211.14 7 5

tHW-tHW cross-strand stack

137

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -213.19 5 3

Multiple bulged bases

138

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -213.53 5 3

139

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -215.37 8 7

140

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -215.55 7 4

141

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -215.76 6 4

142

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -216.26 8 5

Multiple bulged bases

143

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -216.45 3 3

144

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -216.89 5 3

Major groove platform with intercalated tWH

145

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -218.74 11 10

146

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -219.32 3 3

147

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -220.60 12 11

148

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -222.26 7 5

149

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -223.04 5 3

150

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -225.37 9 9

151

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -225.50 9 7

152

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -226.15 8 4

153

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -226.43 8 4

154

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -230.10 10 9

155

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -231.10 6 4

156

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -233.23 9 8

157

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -233.92 7 5

Sarcin-Ricin target in LSU H95; G-bulge

158

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -234.44 14 12

Kink-turn related

159

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -235.78 9 6

8x6 Sarcin-Ricin with inserted A; G-bulge

160

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -236.96 6 5

161

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -239.10 8 5

162

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -239.92 9 8

163

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -240.32 4 4

Intercalated cWS

164

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -240.77 6 5

165

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -242.15 8 5

166

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -242.78 5 3

167

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -244.47 13 12

168

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -245.51 12 10

169

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -247.09 5 4

170

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -247.74 13 12

Pseudoknot

171

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -249.07 7 6

Part of G-quadruplex

172

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -250.52 11 8

173

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -250.62 5 4

174

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -250.85 13 10

175

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -251.52 7 5

176

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -251.72 11 9

177

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -254.05 8 5

178

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -256.07 15 14

179

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -256.78 8 5

180

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -257.63 12 10

181

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -260.62 10 9

182

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -261.79 7 6

183

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -262.68 7 5

184

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -263.57 9 8

185

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -263.74 6 4

Minor groove platform

186

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -265.20 8 6

187

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -265.40 7 4

188

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -267.03 7 5

189

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -267.30 9 7

tSH-tHS-tHW

190

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -267.38 9 5

Kink-turn from U4

191

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -268.56 5 5

192

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -268.98 7 6

UAA/GAN with extra stack

193

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -269.85 10 7

Kink-turn with embedded cWW pair

194

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -271.02 9 9

195

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -271.56 11 8

196

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -273.33 9 6

Decoding loop related

197

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -273.84 6 5

198

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -274.20 7 4

199

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -274.81 6 4

6x5 Sarcin-Ricin; G-bulge

200

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -275.26 9 8

201

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -275.94 5 4

Major groove platform

202

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -275.98 10 7

203

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -276.22 8 5

Receptor of 11-nt loop-receptor motif

204

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -277.14 14 12

205

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -277.48 9 7

206

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -277.53 4 3

Major groove platform; stack outside cWW

207

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -278.09 7 5

208

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -279.40 13 10

209

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -279.73 6 5

Kink-turn

210

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -279.79 14 12

211

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -280.50 11 7

212

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -282.07 8 5

tSH-tHW

213

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -286.78 10 8

214

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -287.12 6 3

215

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -287.39 11 11

216

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -288.08 13 12

217

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -288.51 11 9

Kink-turn related

218

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -288.86 6 3

Major groove platform with intercalation

219

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -289.67 11 9

220

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -290.85 9 8

221

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -291.44 6 4

222

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -291.62 7 6

Other IL

223

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -293.03 16 14

Kink-turn

224

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -293.10 11 10

225

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -293.22 4 3

Major groove platform

226

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -293.48 7 5

227

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -294.62 6 4

Minor groove platform, major groove intercalation

228

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -297.39 8 6

229

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -299.46 6 5

230

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -300.97 7 4

231

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -301.19 6 4

232

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -301.62 10 7

233

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -301.77 11 11

234

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -301.90 9 6

Triple sheared related

235

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -302.17 12 11

Pseudoknot

236

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -305.36 12 11

237

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -307.17 6 5

AAA cross-strand stack

238

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -312.10 9 6

Kink-turn related

239

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -314.65 7 5

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

240

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -315.51 5 3

Multiple bulged bases

241

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -316.42 5 4

242

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -318.97 7 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

243

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -322.90 5 4

Single stack bend

244

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -323.00 5 4

245

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -324.67 15 14

246

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -325.80 5 4

247

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -325.90 11 8

Kink-turn

248

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -325.95 12 10

249

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -326.51 10 9

250

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -327.94 12 9

251

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -330.42 5 5

252

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -331.45 8 5

253

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -331.60 8 6

8x6 Sarcin-Ricin with bulged A; G-bulge

254

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -331.62 6 5

255

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -331.76 11 10

256

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -335.24 16 16

257

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -336.32 8 8

258

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -336.57 6 4

259

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -337.35 8 7

260

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -337.63 16 14

261

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -339.27 12 11

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

262

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -339.84 6 5

263

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -340.35 10 8

264

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -342.27 8 5

265

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -343.24 5 4

266

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -343.84 5 5

Stack and bulge

267

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -344.18 5 3

Minor groove platform

268

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -345.92 5 4

Isolated non-canonical cWW contact

269

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -347.27 12 11

10x8 Sarcin-Ricin; G-bulge

270

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -347.93 9 7

Double sheared; A in syn; two near cWW pairs

271

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -349.81 13 12

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

272

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -352.79 10 8

273

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -354.26 11 9

tSH-tHW-tHH-tHS

274

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -355.34 5 4

Decoding loop related

275

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -355.63 10 8

276

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -356.55 9 8

tWH-tWH-tHW-tHW

277

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -356.56 8 7

UAA/GAN with tHH

278

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -356.75 7 4

279

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -359.68 7 5

7x6 Sarcin-Ricin; G-bulge

280

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -359.74 7 6

281

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -360.38 5 5

282

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -361.85 7 6

283

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -363.09 4 4

Single bulged G

284

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -365.11 8 6

tSH-tHH-tHS

285

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -365.68 6 4

286

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -366.15 9 8

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

287

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -367.74 8 7

Triple sheared with non-canonical cWW

288

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -369.49 10 8

289

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -370.55 19 16

290

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -373.18 9 7

8x7 Sarcin-Ricin; G-bulge

291

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -373.89 8 7

tSH-tSH-tHH-tHS

292

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -374.85 16 14

293

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -378.26 9 7

Kink-turn

294

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -379.73 7 6

8x7 Sarcin-Ricin; G-bulge

295

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -380.36 4 3

Isolated non-canonical cWW pair

296

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -384.86 7 4

297

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -389.09 18 16

298

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -389.26 5 4

Single stack bend

299

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -390.04 7 7

300

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -392.58 10 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

301

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -393.39 8 5

Receptor of 11-nt loop-receptor motif

302

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -394.05 6 4

Isolated non-canonical cWW pair

303

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -396.67 7 6

cWH basepair and non-canonical AC

304

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -402.51 10 8

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

305

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -404.19 5 4

306

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -405.33 13 10

307

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -406.06 7 4

308

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -406.90 7 5

309

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -413.17 6 5

310

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -413.44 12 11

311

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -414.28 8 8

312

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -417.57 10 9

Kink-turn

313

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -418.30 11 10

314

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -418.63 13 10

315

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -418.74 11 10

316

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -420.84 10 7

Kink-turn

317

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -421.74 7 5

Tandem non-canonical cWW pairs

318

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -421.74 4 4

Single bulged U

319

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -423.50 5 5

320

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -424.17 19 18

321

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -425.28 5 4

Single bulged A

322

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -431.04 7 5

323

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -431.27 6 4

UAA/GAN

324

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -431.83 6 5

Single bulged C

325

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -435.41 7 6

Double sheared

326

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -437.25 9 7

UAA/GAN with extra cWW

327

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -439.21 17 17

328

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -440.94 5 4

Isolated non-canonical cWW pair

329

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -441.47 20 18

330

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -441.98 8 7

Kink-turn

331

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -442.27 10 8

332

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -447.14 7 7

333

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -447.34 15 13

334

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -448.24 15 13

335

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -449.01 6 6

336

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -452.80 13 11

337

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -454.95 10 7

Kink-turn

338

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -461.66 17 16

339

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -467.19 12 12

340

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -467.83 10 9

341

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -471.53 11 10

342

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -471.67 9 6

UAA/GAN

343

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -472.71 8 5

344

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -476.78 10 8

345

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -480.06 8 7

Kink-turn

346

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -480.12 8 6

Minor groove platform

347

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -481.21 16 14

348

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -481.93 6 4

Isolated cWS basepair

349

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -483.96 8 6

Kink-turn

350

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -487.70 7 6

351

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -489.44 13 13

352

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -492.61 8 5

353

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -492.90 8 5

tSH-tHW

354

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -495.91 12 12

355

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -497.08 8 7

Symmetric double minor groove platform

356

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -500.81 5 5

357

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -501.88 6 4

Isolated tHS basepair with bulges

358

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -502.64 23 21

359

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -503.74 5 4

Isolated non-canonical cWW pair

360

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -507.64 9 8

Kink-turn related

361

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -511.26 21 20

362

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -513.46 7 4

UAA/GAN related

363

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -519.22 7 5

Isolated tWW turn

364

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -522.16 5 4

365

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -522.82 5 4

Isolated cWH basepair

366

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -531.03 6 4

UAA/GAN variation

367

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -561.08 17 15

Kink-turn related

368

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -562.24 5 5

Tandem non-canonical cWW pairs

369

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -566.20 7 6

Double sheared with non-canonical cWW

370

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -566.30 14 13

371

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -568.90 5 4

372

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -587.36 7 6

Triple non-canonical cWW pairs

373

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -594.25 7 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

374

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -595.01 6 5

Double sheared

375

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -603.75 5 5

Tandem non-canonical cWW pairs

376

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -640.74 19 18

377

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4538.16 18 17

378

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4708.09 12 10

379

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5048.17 11 9

380

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5123.96 10 9

Bacterial 5S Loop E

381

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5232.14 7 7

382

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5248.41 8 5

Part of G-quadruplex

383

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5248.57 8 7

Other IL

384

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5267.83 10 9

385

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5305.52 8 6

386

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5313.60 9 8

Kink-turn with non-sequential stacking

387

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5314.21 9 7

388

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5317.68 9 7

389

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5618.96 8 6

390

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5755.75 6 6

391

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5877.61 8 7

tSH-tWH-tHS-cWW

392

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6179.45 9 7

tSH-tHW-tWH-tHS

393

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6214.19 7 7

394

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6281.92 9 7

395

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6851.48 8 6

Kink-turn

396

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -6944.62 7 6

Quadruple sheared

397

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6997.97 7 5

C-loop with bulged stacked A's

398

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7282.57 4 4

8-nt loop receptor

399

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7757.13 9 6

Triple sheared

400

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8292.29 8 6

401

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8676.63 8 5

402

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8721.15 9 6

Other IL

403

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8730.62 5 5

C-loop

404

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8753.63 7 6

tSH-tWH-tHS

405

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9430.59 7 5

Triple sheared

406

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 5 3

C-loop

407

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 4

408

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 5 5

Isolated non-canonical cWW pair

409

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 6 4

Multiple bulged bases

410

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 5

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 6 4

Coloring options: