RNA 3D Hub

JAR3D Query RF02032-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF02032 maps to these 73 chains: 9L0R|1|A, 9L0R|1|B, 9L0R|1|C, 9L0R|1|D, 9L0R|1|E, 9L0R|1|F, 9L0R|1|G, 9L0R|1|H, 9L0R|1|I, 9L0R|1|J, 9L0R|1|K, 9L0R|1|L, 9LEC|1|J, 9LEE|1|A, 9LEE|1|B, 9LEE|1|C, 9LEE|1|D, 9LEE|1|E, 9LEE|1|F, 9LEE|1|G, 9LEE|1|H, 9LEE|1|I, 9LEE|1|J, 9LEL|1|J, 9LEM|1|A, 9LEM|1|B, 9LEM|1|C, 9LEM|1|D, 9LEM|1|E, 9LEM|1|F, 9LEM|1|G, 9LEM|1|H, 9LEM|1|I, 9LEM|1|J, 9LHK|1|G, 9LHL|1|A, 9LHL|1|B, 9LHL|1|C, 9LHL|1|D, 9LHL|1|E, 9LHL|1|F, 9LHL|1|G, 9LHL|1|H, 9LHL|1|I, 9LHL|1|J, 9LHL|1|K, 9LHL|1|L, 9LHL|1|M, 9LHL|1|N, 9LMF|1|A, 9LMF|1|B, 9LMF|1|C, 9LMF|1|D, 9LMF|1|E, 9LMF|1|F, 9LMF|1|G, 9LMF|1|H, 9LMF|1|I, 9LMF|1|J, 9MEE|1|A, 9MEE|1|B, 9MEE|1|C, 9MEE|1|D, 9MEE|1|E, 9MEE|1|F, 9MEE|1|G, 9MEE|1|H, 9MEE|1|I, 9MEE|1|J, 9MEE|1|K, 9MEE|1|L, 9MEE|1|M, 9MEE|1|N See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 1 Internal loop

Column numbers: 9-10, 47-59 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    UG*CU--CCCGAAGCA    4

    
    CU*AU--GGCGAUGCG    3

    
    AG*C---CUCAGAGCU    3

    
    UC*AG--AGGUGACCA    2

    
    UU*GU--GACGAGCCG    2

    
    UU*AUGCGUGGUUGCG    1

    
    UU*GGGUGGCGGACCA    1

    
    UU*GGUUGGCGGACCA    1

    
    UU*GUUUGACGAACCG    1

    
    UU*GUUUGACGGACCG    1

    
    UC*GU-GAGGCCAGCA    1

    
    UU*GU-UGGCAGACCG    1

    
    AG*CA--GUGGCAGCU    1

    
    AG*CU--GAGGCAGCU    1

    
    CG*CA--GGUGACGCG    1

    
    GU*UU--UUCGAAGCC    1

    
    UC*AC--GACAGACCA    1

    
    UG*CA--AGACGCGCA    1

    
    UG*CU--GGCGAAGCA    1

    
    UG*CU--GGUAGAGCA    1

    
    UU*AA--GGCAAUGCA    1

    
    UU*AC--GGUGGACCA    1

    
    UU*AU--UUAAGAGCG    1

    
    UU*GU--GAUAGACCG    1

    
    UU*GU--GGCGGACCA    1

    
    UG*C---GGCGGCACG    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

8.57 -39.07 8 4

2

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

2.86 -107.65 8 5

3

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -65.29 6 4

4

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -65.68 9 5

5

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -67.88 8 6

6

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -77.82 8 4

7

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -78.24 9 6

Part of G-quadruplex

8

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -80.88 9 6

9

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -81.52 7 5

10

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -85.43 9 6

11

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -85.58 9 7

Pseudoknot

12

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -86.61 8 5

13

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -90.14 9 6

14

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -114.11 8 5

Minor groove platform

15

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -115.78 10 8

16

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -120.18 9 6

17

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -124.13 8 6

18

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -124.57 9 8

19

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -128.34 10 7

20

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -132.08 8 6

21

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -133.11 10 9

22

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -134.47 9 7

23

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -144.31 9 6

24

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -149.50 10 8

25

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -155.58 11 8

26

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -165.19 13 11

27

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -167.15 11 8

28

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -168.07 9 6

29

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -172.71 8 5

30

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -173.01 11 9

31

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -175.13 11 8

Reverse kink-turn related

32

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -176.86 14 12

Kink-turn related

33

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -177.73 10 7

34

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -181.30 9 7

35

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -182.44 9 6

36

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -187.69 11 9

37

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -191.67 9 7

38

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -194.55 11 9

39

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -200.39 13 12

40

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -215.17 10 7

41

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -216.67 10 8

42

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -217.00 15 13

Kink-turn

43

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -217.96 13 10

Pseudoknot

44

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -219.90 12 10

45

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -220.71 10 8

46

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -226.09 10 8

47

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -229.96 10 7

48

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -230.42 8 7

49

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -231.02 9 7

Vitamin B12 Aptamer

50

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -234.44 12 10

51

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -239.01 13 11

Pseudoknot

52

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -240.47 9 7

Major groove intercalation

53

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -240.54 6 5

SSU/LSU pseudoknot

54

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -244.77 8 6

55

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -247.97 15 14

56

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -248.02 9 7

cWH basepair with bulged bases

57

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -252.15 13 12

58

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -255.14 10 9

59

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -256.06 9 7

60

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -258.39 14 14

61

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -261.97 10 8

Kink-turn related

62

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -266.26 15 14

63

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -266.29 12 10

64

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -267.04 12 10

65

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -275.90 11 9

Reverse turn

66

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -276.14 9 7

67

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -277.74 8 6

68

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -278.25 10 8

69

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -280.94 10 8

70

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -286.81 8 6

71

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -287.62 12 11

72

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -288.52 9 7

73

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -289.85 11 8

74

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -291.80 13 12

75

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -295.26 10 7

76

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -296.48 11 9

77

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -301.50 12 11

78

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -301.86 15 14

79

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -303.19 16 15

80

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -304.21 11 8

81

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -304.48 16 15

82

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -304.62 10 7

83

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -309.66 10 8

84

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -317.39 11 10

85

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -319.12 10 8

86

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -321.65 9 7

tSH-tHW

87

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -323.08 9 7

88

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -324.06 8 7

89

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -324.89 8 6

90

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -325.80 8 7

91

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -328.03 10 8

92

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -331.31 11 9

93

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -332.70 10 8

Pseudoknot

94

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -333.07 9 8

Kink-turn

95

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -333.30 13 12

96

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -334.63 14 12

97

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -335.14 12 11

98

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -335.73 11 9

99

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -336.07 17 16

100

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -348.14 17 15

101

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -349.00 9 8

Intercalated tWH

102

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -351.85 11 10

103

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -356.52 9 7

104

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -361.76 18 17

105

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -362.38 10 8

106

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -362.55 11 9

107

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -363.25 12 10

108

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -363.31 11 9

109

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -364.22 13 12

110

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -365.69 12 10

111

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -367.12 9 7

112

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -367.72 14 13

113

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -368.15 9 8

Kink-turn

114

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -371.71 9 6

115

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -376.12 13 12

116

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -378.76 12 8

117

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -382.91 10 9

118

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -384.15 9 7

119

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -386.02 10 8

UAA/GAN related

120

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -389.32 10 8

121

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -389.93 12 10

122

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -390.70 10 8

123

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -391.73 9 7

180 degree turn

124

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -394.22 11 9

125

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -394.84 12 11

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

126

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -397.30 10 8

127

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -398.70 9 7

128

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -400.36 13 11

129

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -403.40 11 8

Reverse kink-turn

130

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -405.21 14 11

131

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -405.73 9 7

132

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -405.88 10 9

133

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -409.65 10 9

134

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -419.08 15 14

135

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -419.14 12 10

8x6 Sarcin-Ricin with inserted A; G-bulge

136

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -419.30 13 11

137

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -419.50 10 9

138

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -423.84 13 12

139

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -424.09 15 13

140

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -429.18 9 7

141

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -430.58 11 10

142

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -432.13 12 10

143

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -435.72 9 6

144

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -442.44 13 11

145

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -444.43 22 19

146

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -446.05 12 11

147

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -446.91 10 9

Kink-turn with embedded cWW pair

148

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -453.48 21 20

149

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -454.99 14 11

150

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -461.44 11 10

Sarcin-Ricin target in LSU H95; G-bulge

151

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -464.00 8 7

Isolated non-canonical cWW pair

152

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -479.00 14 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

153

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -482.71 13 12

10x8 Sarcin-Ricin; G-bulge

154

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -488.92 10 8

155

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -497.40 8 7

Major groove minor groove platform with intercalation; mini C-loop

156

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -508.57 8 6

Left turn

157

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -516.35 10 8

158

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -517.76 9 7

159

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -542.76 8 7

160

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -561.65 8 6

161

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -574.01 8 7

162

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -599.65 12 11

163

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -1101.23 13 12

164

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -1139.68 12 11

165

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -1140.31 9 8

tSH-tHS-tHW

166

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -1187.37 12 11

167

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -1227.08 11 9

168

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -1237.05 10 8

169

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -1265.22 9 8

170

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -1273.31 10 9

171

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -1289.17 13 12

172

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -1290.53 9 7

173

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -1323.64 9 8

174

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -1331.67 11 10

175

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -1332.82 13 10

176

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1336.83 12 9

177

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -1343.93 11 9

Minor groove platform related

178

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -1349.67 9 8

tHW-tHW cross-strand stack

179

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -1350.21 10 7

Major groove intercalation

180

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -1374.77 10 10

181

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -1385.09 12 11

182

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -1431.21 12 9

Kink-turn

183

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -1440.63 8 7

tSH-tHW

184

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -1449.62 9 8

185

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -1450.50 12 11

186

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -1457.23 15 14

187

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -1466.89 10 9

188

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -1470.04 11 10

189

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -1483.44 14 13

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

190

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -1488.74 12 10

191

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -1496.33 11 9

8x6 Sarcin-Ricin with inserted Y; G-bulge

192

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -1504.04 15 14

193

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -1508.62 8 7

Kink-turn

194

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -1511.46 19 18

195

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -1517.00 10 8

196

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -1526.16 9 7

197

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -1528.10 12 11

7x7 Sarcin-Ricin with intercalated A; G-bulge

198

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -1533.32 11 9

199

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -1551.40 11 9

Decoding loop related

200

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -1564.46 11 9

AAA cross-strand stack

201

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -1589.34 15 14

202

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -1601.15 9 8

Kink-turn from U4

203

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -1605.48 9 6

Multiple bulged bases

204

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -1618.77 7 5

205

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -1640.13 10 8

206

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -1728.40 9 8

207

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -1742.67 11 8

208

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -1778.14 9 7

Bulged stacked bases

209

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -1858.77 12 9

210

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -1944.31 7 6

Major groove platform with intercalated tWH

211

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -1948.62 9 6

212

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -1991.45 8 7

213

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -1996.89 10 8

214

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -1998.21 9 7

215

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -2080.10 9 7

216

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -2097.49 9 7

217

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -2143.98 9 8

218

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -2201.28 9 8

219

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -2317.28 11 9

UAA/GAN

220

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -2532.45 10 9

221

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -2657.88 7 7

Major groove intercalation

222

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -2684.47 10 7

223

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -2698.30 10 7

224

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -2734.13 9 7

225

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -2766.37 9 8

226

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -2790.29 9 8

227

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -2813.09 9 8

228

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -2837.65 9 8

Decoding loop related

229

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -3912.83 12 11

230

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -3961.90 11 10

231

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -4034.01 18 16

Kink-turn related

232

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -4286.37 12 11

tSH-tHW-tHH-tHS

233

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -4324.15 15 13

234

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4354.87 13 11

235

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -4366.98 16 14

236

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4460.19 22 22

237

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4536.69 18 17

238

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -4688.54 11 10

Kink-turn related

239

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4701.04 11 10

240

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -4723.29 9 8

Kink-turn

241

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -4796.03 15 14

Kink-turn

242

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -4961.26 11 9

243

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5072.38 12 11

244

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -5121.63 12 11

8x7 Sarcin-Ricin; G-bulge

245

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -5136.23 11 9

246

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -5164.50 10 7

Reverse kink-turn related

247

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5174.40 14 13

Bacterial 5S Loop E

248

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -5207.70 12 10

249

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5250.41 8 7

250

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -5255.91 11 10

251

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5257.18 13 11

tWH-tWH-tHW-tHW

252

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -5261.75 13 11

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

253

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -5275.39 12 10

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

254

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -5279.78 11 9

255

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -5288.19 13 11

256

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -5288.22 12 10

8x6 Sarcin-Ricin with bulged A; G-bulge

257

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -5289.28 11 10

Triple sheared with non-canonical cWW

258

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5290.92 12 10

Other IL

259

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5296.66 12 11

260

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5317.27 11 10

8x7 Sarcin-Ricin; G-bulge

261

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5317.96 9 8

Kink-turn with non-sequential stacking

262

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -5323.51 13 11

263

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5324.82 13 12

Kink-turn related

264

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -5330.96 12 10

265

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5341.39 13 12

266

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -5344.93 11 11

267

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -5354.33 13 12

Kink-turn

268

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -5355.66 10 8

Kink-turn

269

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5358.76 11 10

270

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -5398.96 14 12

271

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -5415.97 12 10

Kink-turn

272

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5420.62 12 9

273

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5426.83 19 19

274

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5466.11 17 17

275

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5467.71 17 17

276

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -5485.69 11 9

UAA/GAN with extra stack

277

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -5485.91 11 9

Part of G-quadruplex

278

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -5500.53 16 15

279

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -5528.44 11 10

280

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -5558.90 11 10

tSH-tSH-tHH-tHS

281

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -5574.25 10 9

Kink-turn related

282

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -5625.75 12 10

283

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5671.82 11 10

7x6 Sarcin-Ricin; G-bulge

284

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -5703.64 15 14

Kink-turn

285

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -5704.44 11 9

Other IL

286

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5718.25 12 12

287

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -5740.81 11 10

288

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -5775.50 13 12

Kink-turn

289

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5829.66 11 10

290

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -5873.71 8 7

291

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -5879.08 10 9

Kink-turn related

292

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -5881.13 11 9

Triple sheared related

293

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5885.56 9 8

294

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5914.65 12 10

Double sheared; A in syn; two near cWW pairs

295

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5929.35 11 10

tSH-tWH-tHS-cWW

296

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -5959.26 10 9

UAA/GAN with tHH

297

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -6021.06 10 9

6x5 Sarcin-Ricin; G-bulge

298

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6245.88 12 10

tSH-tHW-tWH-tHS

299

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6296.85 12 11

300

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6343.25 12 11

301

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6383.26 10 9

Receptor of 11-nt loop-receptor motif

302

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -6472.86 9 8

Receptor of 11-nt loop-receptor motif

303

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -6507.42 11 9

304

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -6582.40 10 10

305

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -6627.04 11 10

UAA/GAN with extra cWW

306

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -6662.15 11 9

307

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -6664.64 11 9

308

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -6677.57 10 9

309

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6882.66 10 7

Kink-turn

310

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -6895.35 12 10

tSH-tHH-tHS

311

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -6944.45 9 8

312

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -7026.41 11 10

Quadruple sheared

313

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7111.05 12 10

C-loop with bulged stacked A's

314

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7164.06 11 9

Symmetric double minor groove platform

315

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -7234.78 8 7

316

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7271.08 9 7

317

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7317.49 10 9

8-nt loop receptor

318

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7355.50 9 7

319

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -7424.29 10 7

320

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7566.24 10 8

321

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -7693.13 10 8

322

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7838.20 11 9

Triple sheared

323

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -7939.03 11 9

cWH basepair and non-canonical AC

324

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8062.04 10 7

325

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -8076.09 9 7

326

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -8127.11 10 8

Tandem non-canonical cWW pairs

327

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -8227.53 9 7

328

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8266.06 8 7

329

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -8310.77 10 8

330

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8336.67 10 9

331

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -8346.17 10 8

332

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8358.77 9 8

Major groove platform

333

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -8377.97 9 8

UAA/GAN

334

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -8381.41 9 7

335

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8399.98 12 9

336

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -8406.77 11 9

337

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -8670.80 10 9

Double sheared with non-canonical cWW

338

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -8686.87 10 9

Double sheared

339

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8692.51 10 8

340

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8768.07 9 7

C-loop

341

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -8780.54 10 8

Multiple bulged bases

342

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8787.58 10 9

Other IL

343

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8805.59 11 10

344

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8838.55 10 9

tSH-tWH-tHS

345

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -8857.34 9 9

5x5 Sarcin-Ricin with intercalated A; G-bulge

346

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -8904.41 9 8

347

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -8910.09 11 9

Minor groove platform

348

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9001.46 9 8

349

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -9400.45 10 9

Triple non-canonical cWW pairs

350

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -9429.34 8 8

tSH-tHW

351

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -9502.06 11 9

352

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9527.27 8 7

353

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9534.82 10 9

Triple sheared

354

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9546.31 8 6

Minor groove platform

355

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9567.58 8 6

Minor groove platform, major groove intercalation

356

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9571.08 8 7

Major groove platform

357

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9589.50 9 7

Minor groove platform

358

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9596.38 8 7

Major groove minor groove platform; mini C-loop

359

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -9607.74 10 8

360

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9648.21 9 7

361

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9649.33 9 7

362

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9655.34 9 7

363

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9695.70 10 8

364

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -9778.27 10 8

365

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 10 8

366

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 7

Single stack bend

367

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Single bulged U

368

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 9 8

Isolated non-canonical cWW pair

369

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 9 8

Isolated tHS basepair with bulges

370

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 9 9

Tandem non-canonical cWW pairs

371

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 7

Multiple bulged bases

372

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 9 7

373

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 10 8

374

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 8 7

Multiple bulged bases

375

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 7

Intercalated cWS

376

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 9 9

Tandem non-canonical cWW pairs

377

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -9999.00 9 8

UAA/GAN related

378

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 10 8

Isolated tWW turn

379

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 8

380

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Single bulged C

381

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

382

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 10 8

383

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 10 9

Isolated non-canonical cWW pair

384

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 7

385

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 10 9

386

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 8 7

Major groove platform; stack outside cWW

387

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 10 7

Minor groove platform

388

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 9 8

Isolated non-canonical cWW contact

389

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 9 9

Isolated cWS basepair

390

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

Multiple bulged bases

391

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 8 6

392

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 10 8

393

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 9 7

394

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 7

395

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 8

Stack and bulge

396

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Single bulged A

397

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 9 9

Isolated non-canonical cWW pair

398

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Single stack bend

399

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -9999.00 11 9

400

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -9999.00 9 8

UAA/GAN variation

401

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 8

402

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 9 8

Isolated non-canonical cWW pair

403

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

404

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 10 9

405

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 9 9

Isolated cWH basepair

406

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 10 8

407

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9999.00 9 9

Double sheared

408

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 8 7

Isolated non-canonical cWW pair

409

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 7

Major groove platform with intercalation

410

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 8 6

C-loop

411

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 8

Single bulged G

Coloring options: