RNA 3D Hub

JAR3D Query RF02032-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF02032 maps to these 73 chains: 9L0R|1|A, 9L0R|1|B, 9L0R|1|C, 9L0R|1|D, 9L0R|1|E, 9L0R|1|F, 9L0R|1|G, 9L0R|1|H, 9L0R|1|I, 9L0R|1|J, 9L0R|1|K, 9L0R|1|L, 9LEC|1|J, 9LEE|1|A, 9LEE|1|B, 9LEE|1|C, 9LEE|1|D, 9LEE|1|E, 9LEE|1|F, 9LEE|1|G, 9LEE|1|H, 9LEE|1|I, 9LEE|1|J, 9LEL|1|J, 9LEM|1|A, 9LEM|1|B, 9LEM|1|C, 9LEM|1|D, 9LEM|1|E, 9LEM|1|F, 9LEM|1|G, 9LEM|1|H, 9LEM|1|I, 9LEM|1|J, 9LHK|1|G, 9LHL|1|A, 9LHL|1|B, 9LHL|1|C, 9LHL|1|D, 9LHL|1|E, 9LHL|1|F, 9LHL|1|G, 9LHL|1|H, 9LHL|1|I, 9LHL|1|J, 9LHL|1|K, 9LHL|1|L, 9LHL|1|M, 9LHL|1|N, 9LMF|1|A, 9LMF|1|B, 9LMF|1|C, 9LMF|1|D, 9LMF|1|E, 9LMF|1|F, 9LMF|1|G, 9LMF|1|H, 9LMF|1|I, 9LMF|1|J, 9MEE|1|A, 9MEE|1|B, 9MEE|1|C, 9MEE|1|D, 9MEE|1|E, 9MEE|1|F, 9MEE|1|G, 9MEE|1|H, 9MEE|1|I, 9MEE|1|J, 9MEE|1|K, 9MEE|1|L, 9MEE|1|M, 9MEE|1|N See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 10 Internal loop

Column numbers: 306-316, 409-420 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    AAAGAGUAA-A*UAAUUGAAAAAU    4

    
    ACCAAAGAC-C*GAGUUGAGUAAU    2

    
    ACGAAAUAC-C*GAGUAGAGUAAC    2

    
    UUGAAAGUU-C*GUGAUGAGUAAG    2

    
    AACAUUCUA-G*CCAAGUCUAAGU    1

    
    AAGAAAGUC-C*GAGAUGAGUAAC    1

    
    AAGAAAGUC-C*GAGAUUAGUAGU    1

    
    AAGAAAGUC-C*GAGGCAAGUAGU    1

    
    AAUGAGUAA-A*UUGAAAAGAAAG    1

    
    ACCAAAAAC-C*GAGUUGAGUAAU    1

    
    ACCAAACAC-C*GAGUCGAGUAAU    1

    
    ACGAAAGUU-C*GUGAUGAGUAAG    1

    
    AUCAAAUAC-C*GAGUAAAGUAGU    1

    
    AUGAAAGGU-C*GAACUGAGUAAU    1

    
    CCCAAACAC-C*GAGUCAAGUAAG    1

    
    GAGAAAGUU-C*GUGAUAAGUACC    1

    
    GAGAACGUU-C*GUAACAAGUACA    1

    
    GCGAAGCGCAC*GGUAGCAG-AAC    1

    
    GUGAAACAA-C*GAUUGGAGUAGU    1

    
    CCUAAAAGC-U*AGCG-GAUUAAG    1

    
    CCUAAAAGC-U*AGUG-GAUUAAG    1

    
    UCGAAAGGU-U*AAAU-AAGUAAG    1

    
    GAGGGGGGU-U*GAAUGGAAU--C    1

    
    GC-GAGUAG-U*GAAUCGAA-AGC    1

    
    GUGAAAUUG-U*GUGAGGA--AGU    1

    
    UCGGAGGAU-U*GGUCCGAUG--A    1

    
    UUAGAAGUU-U*GAG--AAGAAGA    1

    
    GAAAUC-GC-A*GUAA-GAGGA-C    1

    
    GGAAAG----U*GUAGAUAGAA-C    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -110.27 14 11

2

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -135.48 13 10

3

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -142.21 14 11

4

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -142.63 14 10

5

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -147.46 16 13

6

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -156.86 15 12

7

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -159.84 14 11

Pseudoknot

8

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -173.67 10 9

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

9

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -173.97 12 9

10

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -179.91 15 14

11

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -181.09 12 9

10x8 Sarcin-Ricin; G-bulge

12

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -182.46 11 9

tSH-tHW-tHH-tHS

13

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -183.86 12 10

Kink-turn related

14

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -186.02 9 8

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

15

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -190.86 15 12

16

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -191.19 11 7

Bacterial 5S Loop E

17

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -193.41 11 9

18

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -197.65 12 10

19

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -201.97 15 13

20

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -207.26 14 11

21

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -209.60 13 10

22

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -212.20 14 12

23

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -214.68 12 10

24

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -220.54 13 10

25

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -231.26 12 10

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

26

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -235.05 16 13

Kink-turn

27

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -237.21 11 9

28

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -239.41 17 14

29

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -239.60 13 11

30

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -241.22 15 12

31

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -245.08 13 11

32

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -248.05 13 11

33

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -249.82 13 10

34

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -251.21 16 14

35

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -251.21 15 12

36

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -252.58 12 11

37

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -255.60 11 9

8x7 Sarcin-Ricin; G-bulge

38

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -257.67 16 14

39

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -261.26 11 9

40

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -266.85 17 15

41

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -268.20 9 8

8x7 Sarcin-Ricin; G-bulge

42

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -271.46 13 11

43

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -274.28 14 12

44

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -276.76 16 14

45

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -277.30 13 12

46

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -278.08 13 12

47

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -278.54 15 13

48

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -279.40 12 9

8x6 Sarcin-Ricin with inserted A; G-bulge

49

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -283.00 15 13

50

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -285.02 13 11

Kink-turn

51

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -290.20 11 10

Kink-turn related

52

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -290.89 14 11

53

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -290.90 12 10

54

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -293.15 13 12

55

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -295.16 12 10

Kink-turn

56

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -296.04 12 9

57

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -296.86 13 10

58

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -300.75 14 11

59

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -303.14 11 9

60

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -303.53 14 12

61

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -304.87 14 11

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

62

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -305.49 13 11

63

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -307.54 15 13

64

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -309.03 15 13

65

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -309.68 11 9

8x6 Sarcin-Ricin with bulged A; G-bulge

66

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -311.11 11 10

67

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -312.75 15 12

68

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -317.80 16 13

69

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -317.95 12 10

Kink-turn with non-sequential stacking

70

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -318.11 12 10

71

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -318.69 14 11

72

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -320.31 11 9

7x7 Sarcin-Ricin with intercalated A; G-bulge

73

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -321.21 14 11

74

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -323.56 14 11

Kink-turn related

75

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -324.49 13 11

76

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -325.23 14 12

77

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -326.75 12 10

78

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -330.26 14 12

79

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -330.84 13 11

80

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -334.19 13 10

81

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -336.33 13 10

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

82

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -339.10 14 11

83

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -339.61 15 13

Pseudoknot

84

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -339.97 11 9

8x6 Sarcin-Ricin with inserted Y; G-bulge

85

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -340.61 13 11

86

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -344.07 13 12

tWH-tWH-tHW-tHW

87

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -344.77 14 12

88

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -344.88 15 13

89

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -354.92 13 11

Reverse turn

90

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -356.63 11 10

Triple sheared with non-canonical cWW

91

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -360.18 16 13

92

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -362.72 12 10

93

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -364.89 13 10

Kink-turn

94

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -368.15 12 10

Kink-turn

95

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -369.42 11 10

tHW-tHW cross-strand stack

96

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -371.58 14 12

97

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -374.35 13 11

98

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -374.50 12 10

tSH-tHS-tHW

99

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -374.80 13 10

100

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -375.44 13 12

Minor groove platform related

101

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -375.83 14 12

102

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -378.70 15 12

103

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -383.83 13 12

Other IL

104

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -387.17 13 12

105

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -398.59 13 12

106

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -398.98 13 11

107

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -399.34 14 12

108

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -399.68 11 10

tSH-tSH-tHH-tHS

109

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -400.86 10 9

7x6 Sarcin-Ricin; G-bulge

110

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -402.56 14 13

111

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -409.66 13 11

Sarcin-Ricin target in LSU H95; G-bulge

112

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -411.12 14 11

113

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -413.00 13 11

114

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -417.88 13 10

Kink-turn related

115

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -419.98 15 14

116

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -426.89 13 12

117

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -434.12 14 12

118

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -437.71 13 12

119

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -439.49 12 10

Kink-turn

120

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -439.66 17 15

121

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -446.27 12 12

Double sheared; A in syn; two near cWW pairs

122

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -446.55 14 13

Part of G-quadruplex

123

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -446.95 12 11

124

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -449.21 14 11

125

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -450.58 14 11

Kink-turn

126

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -455.51 12 11

6x5 Sarcin-Ricin; G-bulge

127

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -457.89 13 11

128

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -459.06 17 14

129

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -460.54 12 10

130

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -460.83 15 13

131

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -461.71 20 18

132

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -461.82 11 10

Other IL

133

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -461.90 14 13

134

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -470.98 13 10

tSH-tHW-tWH-tHS

135

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -483.26 13 11

UAA/GAN with extra stack

136

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -483.82 13 11

137

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -484.75 13 12

Triple sheared related

138

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -487.62 15 12

139

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -490.62 14 12

140

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -491.25 13 11

Kink-turn

141

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -492.34 16 13

tSH-tHW

142

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -500.05 14 11

UAA/GAN with tHH

143

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -500.13 13 11

144

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -500.13 16 13

145

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -501.90 13 11

UAA/GAN related

146

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -505.98 13 12

147

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -511.22 13 12

tSH-tWH-tHS-cWW

148

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -522.10 13 13

149

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -522.27 11 10

UAA/GAN with extra cWW

150

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -523.39 14 12

151

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -525.58 12 10

Kink-turn

152

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -525.84 15 12

Reverse kink-turn

153

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -530.07 16 13

154

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -537.68 15 13

155

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -549.41 15 12

tSH-tHH-tHS

156

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -550.06 14 13

157

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -552.14 13 11

Kink-turn

158

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -552.39 13 12

159

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -564.14 13 11

Kink-turn

160

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -569.87 15 12

161

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -580.96 13 11

162

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -583.05 16 13

163

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -583.65 14 12

164

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -585.55 14 12

165

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -587.79 12 11

Quadruple sheared

166

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -590.27 13 12

167

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -605.46 13 11

Kink-turn from U4

168

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -620.65 12 10

Kink-turn

169

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -624.36 15 14

Pseudoknot

170

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -625.93 14 13

171

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -629.69 13 11

Kink-turn with embedded cWW pair

172

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -645.92 14 13

173

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -655.43 14 13

174

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -682.40 14 13

175

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -690.06 15 13

176

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -731.46 15 13

Triple sheared

177

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -740.52 14 12

tSH-tHW

178

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -751.38 15 14

179

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -751.78 14 12

180

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -763.24 16 13

181

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -769.46 13 12

AAA cross-strand stack

182

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -773.53 15 13

Decoding loop related

183

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -777.13 14 13

cWH basepair and non-canonical AC

184

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -789.18 14 13

185

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -816.78 15 13

186

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -835.89 13 12

UAA/GAN

187

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -862.37 15 13

188

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -881.60 13 12

Double sheared with non-canonical cWW

189

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -883.43 14 12

UAA/GAN

190

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -887.85 14 13

191

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -895.00 14 12

192

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -925.79 12 12

Triple non-canonical cWW pairs

193

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -956.87 14 12

tSH-tWH-tHS

194

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -959.96 14 13

195

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -984.88 15 13

Double sheared

196

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -1013.77 14 13

5x5 Sarcin-Ricin with intercalated A; G-bulge

197

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -1016.01 12 12

Triple sheared

198

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1021.67 15 14

Tandem non-canonical cWW pairs

199

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -1072.43 16 13

200

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -1085.88 15 13

201

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -1098.32 14 13

202

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -1133.14 14 13

203

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -1136.01 15 13

tSH-tHW

204

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -1203.36 13 12

UAA/GAN variation

205

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -1210.35 14 13

206

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -1244.83 14 13

UAA/GAN related

207

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -1277.38 14 13

Double sheared

208

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1277.88 14 13

Tandem non-canonical cWW pairs

209

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1295.16 15 14

Tandem non-canonical cWW pairs

210

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -1360.78 15 13

211

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -1537.91 14 11

212

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -3871.43 18 15

213

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -4029.31 16 13

Kink-turn related

214

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -4205.31 16 13

215

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -4214.00 16 14

Kink-turn related

216

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -4231.10 20 19

217

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4240.19 14 12

218

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4369.73 16 14

219

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -4382.75 16 14

220

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -4447.90 16 14

221

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -4452.60 15 12

222

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4738.53 15 13

223

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -4755.37 16 13

Reverse kink-turn related

224

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -4816.74 16 14

225

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -4924.13 15 13

226

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -4937.59 15 14

227

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -4985.80 15 14

228

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -5011.15 15 13

229

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5016.61 13 11

230

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -5017.08 15 13

231

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -5017.40 14 12

232

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -5018.51 15 13

233

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -5021.17 15 13

234

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5025.45 14 12

235

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -5064.25 15 13

236

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5114.86 12 11

237

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5160.78 16 14

238

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5161.04 16 14

239

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5167.74 14 13

240

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5172.89 15 13

Part of G-quadruplex

241

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -5188.27 15 12

Vitamin B12 Aptamer

242

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5191.53 17 15

Pseudoknot

243

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5203.17 17 15

244

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5236.24 16 14

245

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -5258.45 15 13

246

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -5374.69 16 14

247

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5396.25 16 15

248

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -5420.08 16 14

249

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -5441.73 14 12

250

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -5482.25 11 10

251

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -5491.29 15 14

Intercalated tWH

252

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -5498.73 14 12

253

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -5523.84 16 13

254

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5534.83 14 12

Kink-turn related

255

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -5575.80 16 14

Reverse kink-turn related

256

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5597.71 14 13

257

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -5608.76 14 12

258

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5617.14 15 14

259

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -5701.38 14 12

260

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5782.31 15 14

261

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5826.04 15 13

262

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5830.65 15 12

263

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5851.43 15 14

264

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5872.72 15 14

265

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -5927.20 15 13

266

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -5936.97 14 12

267

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -5939.91 16 13

268

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -5948.13 14 12

cWH basepair with bulged bases

269

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -5991.15 14 12

270

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -6019.78 15 13

271

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -6034.21 16 15

272

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -6080.31 14 12

273

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6199.06 16 13

Receptor of 11-nt loop-receptor motif

274

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -6209.88 14 12

275

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6219.14 15 13

276

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6239.99 17 15

277

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6255.66 16 15

278

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6264.13 14 14

279

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6276.41 16 14

280

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -6326.14 16 13

Receptor of 11-nt loop-receptor motif

281

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -6346.44 16 14

282

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -6349.95 15 13

283

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -6361.07 17 15

Other IL

284

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -6402.18 15 14

285

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -6472.27 15 14

286

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6492.21 15 14

Minor groove platform

287

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6520.99 15 14

288

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6522.85 17 16

289

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6547.47 13 11

Kink-turn

290

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6649.51 16 14

291

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6748.77 15 13

292

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6775.05 16 14

Major groove intercalation

293

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6920.48 15 13

C-loop with bulged stacked A's

294

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -7090.01 16 14

295

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -7092.57 14 13

296

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -7131.59 14 13

297

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7143.94 15 13

Symmetric double minor groove platform

298

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7192.42 17 15

299

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7224.07 15 12

300

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -7269.77 15 12

180 degree turn

301

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7364.98 16 14

8-nt loop receptor

302

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7378.90 16 14

303

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7419.61 15 14

304

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7496.90 16 14

305

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7562.05 15 14

SSU/LSU pseudoknot

306

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7663.68 15 14

307

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -7677.10 16 15

308

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -7695.70 15 14

309

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7696.83 15 14

310

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -7742.09 16 15

311

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -7804.00 16 14

312

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7822.73 17 15

313

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7844.58 15 14

Major groove intercalation

314

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -7905.99 14 13

315

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -7909.28 15 13

316

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -8057.44 15 15

317

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8103.57 14 13

318

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8144.44 15 14

319

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -8152.63 16 14

320

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8383.42 15 14

321

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8407.62 15 14

322

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8445.15 16 15

323

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8447.12 16 15

324

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8475.69 15 14

325

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -8514.14 16 14

326

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -8521.00 15 15

327

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8555.55 17 17

Major groove platform

328

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -8857.94 17 14

329

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8900.60 15 15

C-loop

330

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8943.87 16 15

Multiple bulged bases

331

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9029.05 14 13

Isolated non-canonical cWW pair

332

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9075.30 14 13

333

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -9162.29 14 14

334

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9465.25 15 15

335

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -9533.87 15 14

Isolated non-canonical cWW pair

336

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -9534.79 14 14

337

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -9546.27 15 15

338

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9582.63 15 14

339

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9665.86 15 14

Minor groove platform

340

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9789.05 16 14

341

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9800.14 15 14

342

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9818.89 17 15

343

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9912.56 16 16

Bulged stacked bases

344

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9997.70 18 15

Multiple bulged bases

345

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 15 14

346

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 17 15

347

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 16

Minor groove platform, major groove intercalation

348

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 16 15

349

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 16

Single stack bend

350

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 14 14

351

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 17 17

Single bulged U

352

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 15 15

Isolated non-canonical cWW pair

353

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 16 15

Isolated tHS basepair with bulges

354

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 16 16

Multiple bulged bases

355

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 14 13

356

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 16 15

357

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 17 15

358

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 16 15

Multiple bulged bases

359

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 16

Intercalated cWS

360

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -9999.00 15 13

Major groove minor groove platform with intercalation; mini C-loop

361

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 16 16

362

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 16 16

363

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 15

364

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 18 16

365

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 15 15

Major groove minor groove platform; mini C-loop

366

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 16 15

Isolated tWW turn

367

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 16

Major groove intercalation

368

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 19 17

369

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 16 14

370

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 17 17

Single bulged C

371

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 16

372

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 15 15

Isolated non-canonical cWW pair

373

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 16

374

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9999.00 15 14

375

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 17 16

Minor groove platform

376

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -9999.00 15 14

377

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 16 16

Major groove platform; stack outside cWW

378

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 14 13

379

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 16 16

Major groove platform

380

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 16 16

Minor groove platform

381

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 16 15

382

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9999.00 15 14

383

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 16 15

Isolated non-canonical cWW contact

384

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 16 15

Isolated cWS basepair

385

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 17 16

Multiple bulged bases

386

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 16 15

387

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 15 15

388

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 15 14

389

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 17 16

390

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 15

Stack and bulge

391

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 15 15

Decoding loop related

392

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 17 17

Single bulged A

393

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 15 15

Left turn

394

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 16 16

Isolated non-canonical cWW pair

395

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 17 17

Single stack bend

396

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 15 14

397

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 16 16

398

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 16 16

399

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 18 17

400

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 16 16

Minor groove platform

401

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 16 15

Isolated non-canonical cWW pair

402

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 16 16

Major groove platform with intercalated tWH

403

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 18 17

404

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 17 17

405

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 15 15

Isolated cWH basepair

406

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 16 16

407

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 15 15

408

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 16 16

Major groove platform with intercalation

409

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 16 15

C-loop

410

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 17 16

411

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 17 17

Single bulged G

Coloring options: