RNA 3D Hub

JAR3D Query RF02032-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF02032 maps to these 73 chains: 9L0R|1|A, 9L0R|1|B, 9L0R|1|C, 9L0R|1|D, 9L0R|1|E, 9L0R|1|F, 9L0R|1|G, 9L0R|1|H, 9L0R|1|I, 9L0R|1|J, 9L0R|1|K, 9L0R|1|L, 9LEC|1|J, 9LEE|1|A, 9LEE|1|B, 9LEE|1|C, 9LEE|1|D, 9LEE|1|E, 9LEE|1|F, 9LEE|1|G, 9LEE|1|H, 9LEE|1|I, 9LEE|1|J, 9LEL|1|J, 9LEM|1|A, 9LEM|1|B, 9LEM|1|C, 9LEM|1|D, 9LEM|1|E, 9LEM|1|F, 9LEM|1|G, 9LEM|1|H, 9LEM|1|I, 9LEM|1|J, 9LHK|1|G, 9LHL|1|A, 9LHL|1|B, 9LHL|1|C, 9LHL|1|D, 9LHL|1|E, 9LHL|1|F, 9LHL|1|G, 9LHL|1|H, 9LHL|1|I, 9LHL|1|J, 9LHL|1|K, 9LHL|1|L, 9LHL|1|M, 9LHL|1|N, 9LMF|1|A, 9LMF|1|B, 9LMF|1|C, 9LMF|1|D, 9LMF|1|E, 9LMF|1|F, 9LMF|1|G, 9LMF|1|H, 9LMF|1|I, 9LMF|1|J, 9MEE|1|A, 9MEE|1|B, 9MEE|1|C, 9MEE|1|D, 9MEE|1|E, 9MEE|1|F, 9MEE|1|G, 9MEE|1|H, 9MEE|1|I, 9MEE|1|J, 9MEE|1|K, 9MEE|1|L, 9MEE|1|M, 9MEE|1|N See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 4 Internal loop

Column numbers: 57-75, 108-198 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GCGUGUCUGUGAUAGAUGA*GAUAGAA------------------------------------------------------------AAAACUCAAAAAAGCAA-AAGU-C    3

    
    GCACGUCAUGGUAGGUUAC*CAUUUGGGUAGAGCACUCGUUUUUGGAACGAAUGGUAGCCGGUUCAAAUCCGGUCAACUCAUCCUUGAAAGAUGAAAAAACGCA-AAGA-C    1

    
    GCCCUUCUCCUAGGUCAAA*UCAACCGAAAAGGGGAUAUAGUUCAAC--------------------UGGUAGAGCACUGUAUUUUUCAUACAGCGAAAGGCAC-AAGA-C    1

    
    GCUCAUCGCGGUAGGUUGC*AAACUGGAGACUGUAGGUU-----------------------------------CAAAUCCUACAUUGUAAAUCAAAAAUGCAA--AGA-C    1

    
    GCUCAUCAAGGUAGGUUGC*UAAACAGGAUGUUGCGG---------------------------------------GUUCGAUCCCCGCCGUAAUAAAAUGCAA--AGA-C    1

    
    GCGCAAUCUUCACUUCGCC*GGCGUAGAUAAC-------------------------------------------------AAGUUCAUUAACAAGAAAAGCAAAGAGU-C    1

    
    GCACUGGGUUCCGAAUAAG*UAAACCAUUAAA--------------------------------------------------UAUAACAUUAUCUAAAAUGCAA-AAGU-C    1

    
    CCGCUACCUGAAACCACUG*GCAAAAUCA--------------------------------------------------------UAAAAAUCAAAAUAAGAAA-AAGU-G    1

    
    CCACUACUUCUAUCAUCAC*AAAUUCAU----------------------------------------------------------GAUAUAAACAUAAAGCAA-AAGU-G    1

    
    CCGCUACCUUCCACAUCCG*AACAACUA----------------------------------------------------------UUAAUUAAAAUCAAGGAA-AAGU-G    1

    
    CCACUACUUUCACAAUCCA*AAAUUAA-----------------------------------------------------------UUAUUAAGAAAUAAGCAA-AAGU-G    1

    
    CCACGACUUCGACAAAUCU*AACAUUU------------------------------------------------------------AAAAAAGAAGAAAUCGA-AAGU-G    1

    
    CCACUACUUUCACAAUCCA*AAUUAAU------------------------------------------------------------UAUUAUGAAGUAAGGAA-AAGU-G    1

    
    CCACUACUUUCACAAUCCA*CAAAUUA------------------------------------------------------------AAAAGAUCAUUAAGGAA-AAGU-G    1

    
    CCGCUACAUCUAUUAUCCA*AACUU--------------------------------------------------------------AUAAAUCAAUAAAGGAA-AAGU-G    1

    
    CCGCUACUUUCACCAUCCA*CAAAU--------------------------------------------------------------ACUAAGAGACAAAGGAA-AAGU-G    1

    
    GCACAUCGUCCAUUCUUCC*UACU---------------------------------------------------------------AAUAAUUAUGCAAGCGA-AAGU-C    1

    
    CCGCUACCUUCCUUAUCCG*CAU----------------------------------------------------------------UAAAAUUAACAAAGGAG-AAGU-G    1

    
    GCACAUCGUCCAUUUUUCC*UAC----------------------------------------------------------------AUAAGAUAAUACAGCGA-AAGC-C    1

    
    CCACUACUUCGACACAUCC*AU-----------------------------------------------------------------UAAAUACAAUUAAGCAA-GAGU-G    1

    
    CCGCUACAUCUAUUAUCCA*AC-----------------------------------------------------------------UAAUAAAUUAAAAGAAA-AAGU-G    1

    
    GCACAUCUUUCUCAUUUCC*-------------------------------------------------------------------AAACUAAAAGAGAGCAA-AAGUUC    1

    
    GCGCGUCCUGA--------*CACUUAAC----------------------------------------------------------AAUUAAAAAAUUAAGCAA-AAGA-C    1

    
    CCACGACUUCGACAAAUCU*-------------------------------------------------------------------UAAAAAGAAGAAAUCGA-AAGU-G    1

    
    GCACAUCUUUCAUAAAUCC*-------------------------------------------------------------------AAUGAUUAAAAAAGCAA-GAGU-C    1

    
    GCACGUCUGCGAUACACGA*-------------------------------------------------------------------AUAUUGGAAUAAAGCAA-AAGU-C    1

    
    GCUCAACUUUCAUGACUCU*-------------------------------------------------------------------UAAACUACAGAAAGGAA-AAGU-C    1

    
    GCUCAACUUUCAUUACACU*-------------------------------------------------------------------AAAACUACAGAAAGGAA-AAGU-C    1

    
    GCUCAUCUUUCAUCACACU*-------------------------------------------------------------------AAACUACAGAAAAGGAA-AAGU-C    1

    
    ACGCGGACACAGACUAAAA*-------------------------------------------------------------------UGAAAAUAAACAUGCAA--AGU-U    1

    
    GCACGUCUUGGUAGGAUUG*-------------------------------------------------------------------AAUCAGGCUAAACGCAA--AGU-C    1

    
    GCACGUCUUUGUCAGUUCC*-------------------------------------------------------------------GUUCUUGUUAAACGCCA--AGU-C    1

    
    GCGCUUCU--CGAUCGGUU*-------------------------------------------------------------------GCGAACCAUUAAAGCAA-AAGC-C    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -1158.09 27 25

2

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -1230.37 27 26

3

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -1360.08 29 29

4

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -1369.07 28 26

5

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -1496.96 30 27

6

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -1597.95 31 29

7

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -1755.75 34 33

Pseudoknot

8

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -1923.27 31 29

9

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -2012.99 32 29

10

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -2567.88 31 29

11

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -2676.32 31 30

12

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -2850.77 32 30

10x8 Sarcin-Ricin; G-bulge

13

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -3058.10 31 31

14

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -3443.35 33 31

Bacterial 5S Loop E

15

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -3452.77 33 32

16

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -3510.44 33 32

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

17

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -3521.98 30 30

tSH-tHW-tHH-tHS

18

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -3529.17 32 30

19

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -3545.53 30 28

20

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -3658.76 32 30

21

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -3711.83 34 32

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

22

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -3741.44 33 31

23

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -3863.32 34 33

24

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -3892.55 31 30

25

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -3893.67 31 30

26

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -4110.31 33 31

27

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -4187.65 31 30

28

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -4282.27 32 31

29

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -4288.43 32 31

Kink-turn

30

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -4295.62 33 30

31

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -4300.07 28 27

32

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -4313.89 31 29

33

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -4318.31 31 29

34

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -4330.91 33 31

35

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -4353.51 31 30

Kink-turn related

36

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -4373.45 33 32

8x7 Sarcin-Ricin; G-bulge

37

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -4386.96 32 31

Kink-turn related

38

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4388.75 29 27

39

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -4393.19 32 31

40

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4403.39 32 31

41

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -4412.92 32 30

42

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4415.23 31 29

43

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -4427.03 36 35

44

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -4454.16 30 29

45

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -4460.67 33 31

46

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -4592.16 35 34

47

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -4648.74 35 33

48

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -4665.89 33 33

49

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4845.14 34 33

50

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -4870.18 33 33

51

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -4971.52 35 33

52

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -5008.61 35 33

8x7 Sarcin-Ricin; G-bulge

53

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -5034.02 32 32

54

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -5118.82 34 33

55

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -5126.49 35 34

56

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -5129.38 33 31

57

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -5134.08 33 32

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

58

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5173.22 33 32

59

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -5181.87 34 33

60

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -5183.79 34 33

61

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -5184.03 32 31

62

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5193.15 33 33

63

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -5201.19 32 32

64

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -5212.40 35 34

65

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -5247.81 33 32

66

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -5302.42 34 33

67

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -5345.48 35 34

68

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -5348.79 35 34

8x6 Sarcin-Ricin with inserted A; G-bulge

69

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -5362.72 33 31

70

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -5370.46 33 32

71

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -5377.54 31 31

72

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5378.63 31 29

73

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -5384.61 33 32

74

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -5401.12 34 33

75

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -5405.89 34 34

76

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -5413.56 33 32

77

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -5420.92 35 33

Pseudoknot

78

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -5421.18 35 33

79

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -5431.45 36 35

80

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -5435.42 32 31

81

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -5441.58 34 33

Minor groove platform related

82

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -5442.70 34 33

Kink-turn

83

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -5443.47 33 32

84

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5471.97 32 31

Kink-turn related

85

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -5486.38 32 32

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

86

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -5487.65 35 35

Sarcin-Ricin target in LSU H95; G-bulge

87

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -5506.90 35 33

Kink-turn

88

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -5513.35 31 31

89

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -5519.50 34 33

90

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -5521.68 34 33

91

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5523.14 33 32

Kink-turn with non-sequential stacking

92

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5525.65 34 33

tWH-tWH-tHW-tHW

93

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -5527.03 34 32

94

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5527.11 34 33

Pseudoknot

95

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -5530.49 34 32

96

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -5531.92 34 34

97

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -5532.48 36 34

98

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -5532.90 34 34

7x7 Sarcin-Ricin with intercalated A; G-bulge

99

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -5537.12 34 32

100

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5537.21 34 33

101

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -5537.83 34 33

Kink-turn

102

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -5538.20 34 34

Kink-turn related

103

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -5540.72 33 32

104

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -5541.34 34 32

105

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -5542.11 35 34

tHW-tHW cross-strand stack

106

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -5543.46 35 34

Reverse turn

107

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -5543.52 35 35

108

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -5545.12 34 34

109

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -5545.97 36 35

110

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -5546.19 37 36

111

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -5546.99 36 34

112

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -5549.16 35 34

tSH-tHS-tHW

113

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -5549.35 35 34

8x6 Sarcin-Ricin with bulged A; G-bulge

114

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -5551.07 35 33

8x6 Sarcin-Ricin with inserted Y; G-bulge

115

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5551.23 36 34

116

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -5552.31 34 34

Reverse kink-turn related

117

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -5555.40 35 35

118

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -5555.87 35 34

119

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -5556.57 35 34

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

120

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -5561.42 38 36

121

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -5561.95 34 33

Kink-turn

122

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -5564.13 35 34

123

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -5566.26 36 35

124

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -5568.74 35 33

125

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -5571.03 34 33

Kink-turn

126

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5573.65 36 35

127

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -5576.47 33 32

128

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -5577.18 34 33

Triple sheared with non-canonical cWW

129

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5579.29 38 36

130

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -5584.36 35 33

131

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5587.33 36 35

132

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5589.44 37 36

133

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5590.28 36 35

134

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5604.41 37 37

135

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -5611.63 37 35

136

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5612.31 38 37

Part of G-quadruplex

137

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5617.79 37 36

Other IL

138

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -5623.80 36 34

139

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -5627.02 35 34

140

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -5631.98 36 35

Kink-turn

141

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -5640.81 38 36

142

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5642.70 36 35

143

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5683.95 36 36

144

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -5695.45 36 35

145

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -5711.47 36 35

Kink-turn

146

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -5721.08 37 36

147

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -5728.00 37 36

148

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -5738.96 36 34

149

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -5753.14 36 35

Vitamin B12 Aptamer

150

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -5778.84 36 36

Kink-turn

151

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -5794.66 36 34

152

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5800.67 36 36

153

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -5807.89 38 36

tSH-tHW

154

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -5818.96 35 35

155

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -5867.67 35 35

156

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -5885.86 36 34

tSH-tSH-tHH-tHS

157

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -5887.98 34 34

158

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -5888.26 35 33

159

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -5898.68 38 38

Part of G-quadruplex

160

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -5903.00 35 33

Kink-turn

161

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -5916.65 35 34

Kink-turn related

162

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -5917.83 36 34

163

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -5944.55 37 36

164

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -5979.20 35 35

165

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5981.39 37 35

Kink-turn related

166

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -5986.29 34 33

167

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5989.30 35 34

7x6 Sarcin-Ricin; G-bulge

168

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -6000.79 34 34

Kink-turn

169

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6013.36 37 35

170

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -6014.32 37 36

171

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -6058.29 38 37

172

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -6058.85 38 37

173

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -6060.93 36 35

174

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -6091.70 36 34

175

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -6108.04 34 34

Kink-turn

176

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -6128.12 36 36

177

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -6143.80 35 34

Reverse kink-turn related

178

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -6146.16 35 35

179

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -6153.92 37 37

Pseudoknot

180

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -6157.00 38 37

181

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -6233.43 39 38

182

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -6251.07 34 34

Double sheared; A in syn; two near cWW pairs

183

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -6252.19 39 38

184

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -6258.04 37 37

185

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -6266.05 34 34

tSH-tWH-tHS-cWW

186

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -6266.90 36 35

187

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -6267.25 33 33

188

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -6301.14 36 35

Triple sheared related

189

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6310.73 38 37

190

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -6313.40 36 36

191

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -6340.76 39 39

192

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -6354.55 37 36

193

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -6355.49 36 36

194

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -6356.84 37 36

Kink-turn related

195

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -6372.14 36 35

UAA/GAN with tHH

196

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -6383.79 36 36

197

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -6384.19 37 35

198

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -6401.72 37 36

Intercalated tWH

199

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -6421.81 35 35

6x5 Sarcin-Ricin; G-bulge

200

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -6424.55 33 33

201

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -6425.68 36 34

202

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6440.36 34 33

203

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6459.68 38 36

204

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6495.13 37 37

205

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -6501.86 36 35

206

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -6518.19 38 38

207

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -6522.80 39 37

208

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -6548.55 35 34

Kink-turn with embedded cWW pair

209

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -6560.09 37 35

UAA/GAN with extra stack

210

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -6562.04 37 37

211

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6589.48 35 34

tSH-tHW-tWH-tHS

212

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -6594.72 39 38

213

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -6602.14 35 34

214

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -6604.44 39 39

215

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -6608.49 38 36

cWH basepair with bulged bases

216

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -6613.86 37 36

217

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -6620.12 35 35

218

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -6662.15 36 35

Kink-turn from U4

219

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -6689.56 37 35

Reverse kink-turn

220

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6708.79 36 36

221

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6720.56 37 36

222

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6725.09 36 36

223

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -6745.49 35 34

UAA/GAN related

224

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6748.30 37 36

225

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -6757.10 37 36

226

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -6785.44 38 37

227

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -6806.03 35 34

Other IL

228

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -6826.74 35 35

229

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6896.21 38 37

Receptor of 11-nt loop-receptor motif

230

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -6934.36 35 32

231

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -6943.35 36 35

232

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -6953.47 36 35

233

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -6981.70 36 36

234

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6985.24 40 38

235

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6993.44 36 35

Minor groove platform

236

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -7016.14 35 34

UAA/GAN with extra cWW

237

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -7019.86 37 36

238

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -7036.66 38 37

Receptor of 11-nt loop-receptor motif

239

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -7038.13 36 36

240

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -7043.85 38 37

241

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -7057.18 37 37

242

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -7159.30 38 37

243

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -7161.37 38 36

244

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -7190.77 40 39

245

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -7208.75 39 37

246

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -7228.45 38 37

247

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -7229.99 40 38

248

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -7307.38 37 34

Kink-turn

249

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -7316.06 37 37

250

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7335.14 37 37

Major groove intercalation

251

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -7359.28 36 35

tSH-tHH-tHS

252

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -7437.72 35 34

Quadruple sheared

253

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -7475.09 37 36

tSH-tHW

254

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7486.02 37 36

C-loop with bulged stacked A's

255

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -7486.35 37 36

256

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -7502.06 38 37

257

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -7502.70 38 37

258

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -7530.37 38 37

259

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -7619.75 36 36

260

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7694.09 36 36

Symmetric double minor groove platform

261

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -7751.14 36 36

AAA cross-strand stack

262

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7768.19 39 38

263

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -7782.98 39 37

264

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -7866.02 38 37

265

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7871.95 38 38

266

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -7879.99 37 37

267

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -7938.44 39 38

268

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7968.96 40 39

8-nt loop receptor

269

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7997.09 37 37

270

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -8038.75 38 37

271

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8110.68 38 37

272

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -8111.44 38 37

273

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -8117.89 37 36

SSU/LSU pseudoknot

274

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -8259.33 37 36

275

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -8262.77 39 37

Decoding loop related

276

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -8300.87 39 38

277

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -8336.96 39 38

278

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -8407.70 38 37

Triple sheared

279

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -8456.79 39 38

280

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -8480.99 38 37

Major groove intercalation

281

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -8516.65 39 38

282

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -8536.99 37 36

cWH basepair and non-canonical AC

283

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -8541.71 37 37

284

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -8552.40 37 36

180 degree turn

285

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -8556.14 39 37

286

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8795.25 38 37

287

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -8813.90 37 37

Tandem non-canonical cWW pairs

288

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -8833.02 41 39

289

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -8847.32 37 37

290

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -8904.20 37 36

UAA/GAN

291

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -8950.75 39 38

292

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -9010.61 36 35

UAA/GAN

293

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9019.97 37 37

294

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -9036.81 38 37

295

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9066.72 39 38

296

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -9077.04 38 37

297

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -9116.12 38 38

298

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -9131.73 38 37

299

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -9138.32 39 38

300

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -9144.23 38 38

301

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -9269.83 36 35

Double sheared with non-canonical cWW

302

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -9273.63 41 41

Major groove platform

303

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -9310.51 37 37

304

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9391.66 39 37

Double sheared

305

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9442.03 40 39

306

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -9464.85 39 37

307

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9478.30 39 38

308

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -9479.25 37 36

tSH-tWH-tHS

309

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -9506.29 37 37

5x5 Sarcin-Ricin with intercalated A; G-bulge

310

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -9535.60 39 39

311

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9541.14 39 38

Other IL

312

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -9611.62 38 38

C-loop

313

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -9688.03 40 39

Multiple bulged bases

314

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -9929.12 39 38

315

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -9999.00 37 37

tSH-tHW

316

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 39 38

317

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 41 40

318

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 40 39

Minor groove platform, major groove intercalation

319

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 40 39

320

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -9999.00 39 38

321

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 38 38

322

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 40 40

Single stack bend

323

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 41

Single bulged U

324

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 40 39

Isolated non-canonical cWW pair

325

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 41 40

Isolated tHS basepair with bulges

326

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 38 37

Tandem non-canonical cWW pairs

327

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 40 39

Multiple bulged bases

328

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -9999.00 38 37

329

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 37 37

330

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 39 39

331

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 39 38

332

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 40 40

Intercalated cWS

333

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 40 40

Multiple bulged bases

334

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -9999.00 38 37

Major groove minor groove platform with intercalation; mini C-loop

335

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9999.00 38 38

Minor groove platform

336

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 41 40

337

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -9999.00 37 37

UAA/GAN related

338

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 38 38

Tandem non-canonical cWW pairs

339

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 40 40

340

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 39 39

341

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 41 40

342

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 36 35

343

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 39 39

Major groove minor groove platform; mini C-loop

344

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 40 40

Isolated tWW turn

345

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 37 37

346

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 39 39

Major groove intercalation

347

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -9999.00 37 37

348

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 41

349

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -9999.00 39 38

350

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 39 39

351

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 39 38

352

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 41

Single bulged C

353

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 40

354

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 37 36

355

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 40 38

Multiple bulged bases

356

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 39 39

Isolated non-canonical cWW pair

357

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 40 40

358

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9999.00 37 37

359

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 38 37

360

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -9999.00 38 38

361

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 40 40

Minor groove platform

362

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9999.00 36 36

Triple sheared

363

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 40 40

Major groove platform; stack outside cWW

364

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -9999.00 36 36

Triple non-canonical cWW pairs

365

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -9999.00 38 36

366

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 38 37

367

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 40 40

Major groove platform

368

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 39 38

Minor groove platform

369

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 39 38

370

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9999.00 39 38

371

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 39 39

Isolated non-canonical cWW contact

372

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9999.00 39 38

373

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 40 39

Isolated cWS basepair

374

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 40 40

Multiple bulged bases

375

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 40 39

376

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 39 38

377

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 38 38

378

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 40

379

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 39 38

Stack and bulge

380

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 39 39

Decoding loop related

381

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 41

Single bulged A

382

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 39 39

Left turn

383

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 39 38

384

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 40 40

Isolated non-canonical cWW pair

385

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 41

Single stack bend

386

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -9999.00 38 37

387

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 39 39

388

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -9999.00 37 36

UAA/GAN variation

389

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 39 39

390

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 40 39

391

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9999.00 38 37

Isolated non-canonical cWW pair

392

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 39 38

393

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 41

394

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 37 37

395

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 40 39

Minor groove platform

396

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 39 39

Isolated non-canonical cWW pair

397

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 39 39

Major groove platform with intercalated tWH

398

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 41

399

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 41 40

400

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 39 39

401

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 39 39

Isolated cWH basepair

402

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9999.00 36 36

Double sheared

403

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 39 39

404

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 39 38

Isolated non-canonical cWW pair

405

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 39 39

Bulged stacked bases

406

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9999.00 38 38

407

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -9999.00 39 38

408

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 39 39

C-loop

409

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 40 40

Major groove platform with intercalation

410

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 40 39

411

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 41 41

Single bulged G

Coloring options: