RNA 3D Hub

JAR3D Query RF02997-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

There are no chains in PDB that we map to Rfam family RF02997.

Loop 12 Internal loop

Column numbers: 170-294, 404-406 
    Scored sequences and counts

    
    CUA-GAAGUGGGCGUGCCUGGCAGAAGGAGUAGGUCGAAAACUGGUUGCUGAAGCAGCGUAA-GCUCCCUGAUGUA--AACUCCCUG----AAGUUAUCAUAGUAAUACAUCAAAGCAAUAUGAA*UUA    2

    
    CUA-GACGUGGGCAAGCCUAACCAAAGGAG-CAAUCGAAAACUCGAUGAUGAAGCAGCGUAA-GCUCCCUGAUAU-AUAACUCCCUGAUUCAAAGUUU---------AUAUUAAAGUAAUACGAG*CUG    2

    
    CUA-GAUGUGGGCAAGCCUAACCGAAGGAGUCGAUCGAAAACUCGUUGUUGAAGUAGCGUAA-GCUCCCUGAU-----------------AAAA---------------AUCAUAGUAAUACGAG*CUG    2

    
    CUA-GAAGUGGGCGUGCCUGGCAGAAGGAGUAGGUCGAAAACUGGUUGCUGAAGCAGCAUAA-GCUCCCUGAUGUA--AGCUCCCUGAAU-AAAUU--CACAGCAAUACAUCAAAGUAGUAUGAA*UUA    1

    
    CUA-GAAGUGGGCGUGCCUGGCAGAAGGAGUAGGUCGAAAACUGGUUGCUGAAGCAGCGUAA-GCUCCCUGAUGUA--AGCUCCCUGAAU-AAAUUCA--CAGCAAUACAUCAAAGCAAUAUGAG*CUA    1

    
    CUA-GAAGUGGGCGUGCCUGGCAGAAGGAGUAGGUCGAAAACUGGUUGCUGAAGCAGCGUAA-GCUCCCUGAUGUA--AACUCCCUG----AAAUUAUUAUAGUAAUACAUCAAAGCAAUAUGAG*CUA    1

    
    CUA-GACGUGGGCGAGCCUAACCAAAGGAGUCAGUCGAAAACUCGUUGUUGAAGUAGCGUAA-ACUCCCUGAUACA--AACUCCCUGAUUCAAAGUAA--------UGUAUCAAAGUAAUACGAG*CUG    1

    
    CUA-GACGUGGGCAAGCCUAACCAAAGGAG-CAAUCGAAAACUCGAUGAUGAAGCAGCGUAA-GCUCCCUGAUAU-ACAACUCCCUGAUUCAAAGUUU---------AUAUUAAAGUAAUACGAG*CUG    1

    
    CCAAGAUGUGGGCAAGCCUAGC-UAGGGAG-GUAUCGAAAACUGUUUGUUGAAGUAGCGUAAUUCUCCCUGUGUA---AGCUCCCUUACUAAAAGUAA---------UACAUAAAGAGUUAUGAA*UUA    1

    
    CCAAGAUGUGGGCAAGCCUAGC-UAGGGAG-GUAUCGAAAACUGUUUGUUGAAGUGGCGUAAUUCUCCCUAUGUA---AGCUCCCUUACUAAAAGUAA---------UACAUAAAGAAUUAUGAA*UUA    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -5066.66 92 91

2

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -5502.96 111 111

3

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -5582.48 114 113

4

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -5647.53 121 121

5

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -9999.00 106 106

Kink-turn

6

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -9999.00 108 108

tSH-tHW

7

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -9999.00 109 108

8

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -9999.00 107 107

9

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 108

10

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 107

11

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -9999.00 107 106

Reverse turn

12

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -9999.00 110 109

Triple sheared related

13

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -9999.00 108 106

14

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -9999.00 111 110

15

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -9999.00 111 110

16

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 110 109

17

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -9999.00 108 107

18

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -9999.00 100 99

19

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -9999.00 111 109

20

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -9999.00 106 105

Vitamin B12 Aptamer

21

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -9999.00 107 106

Kink-turn

22

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 109 108

Minor groove platform, major groove intercalation

23

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -9999.00 108 107

24

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 110 108

25

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -9999.00 106 106

Kink-turn

26

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -9999.00 107 106

27

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -9999.00 110 110

28

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -9999.00 111 111

29

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 108 107

30

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -9999.00 110 109

31

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -9999.00 110 108

32

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -9999.00 111 110

33

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -9999.00 107 106

34

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -9999.00 107 106

35

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 109

Single stack bend

36

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 108

37

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -9999.00 109 108

38

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 107

39

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 110

Single bulged U

40

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -9999.00 105 105

41

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -9999.00 111 110

Other IL

42

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -9999.00 107 106

43

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -9999.00 109 109

UAA/GAN

44

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -9999.00 105 103

45

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -9999.00 109 108

6x5 Sarcin-Ricin; G-bulge

46

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -9999.00 110 110

47

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -9999.00 107 106

48

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -9999.00 104 103

49

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -9999.00 108 106

50

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 109 109

Isolated non-canonical cWW pair

51

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -9999.00 101 100

Kink-turn related

52

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -9999.00 110 110

tSH-tHW-tWH-tHS

53

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -9999.00 107 107

54

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -9999.00 106 105

55

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -9999.00 107 107

56

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -9999.00 112 111

57

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -9999.00 109 108

58

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -9999.00 112 112

59

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 109 109

Isolated tHS basepair with bulges

60

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -9999.00 109 109

61

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -9999.00 104 103

62

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -9999.00 108 107

63

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 109 109

Tandem non-canonical cWW pairs

64

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -9999.00 108 108

tSH-tHW-tHH-tHS

65

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -9999.00 102 101

66

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 109 109

Multiple bulged bases

67

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -9999.00 107 106

68

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -9999.00 110 110

69

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 110 109

70

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 109 108

71

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -9999.00 105 104

72

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 108 107

73

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 107 106

74

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 112 111

75

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -9999.00 116 115

76

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -9999.00 109 109

77

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 109 109

Multiple bulged bases

78

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 109

Intercalated cWS

79

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -9999.00 116 116

80

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -9999.00 109 108

Major groove minor groove platform with intercalation; mini C-loop

81

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -9999.00 101 100

82

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 109 109

83

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -9999.00 109 109

84

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -9999.00 110 108

85

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -9999.00 108 106

86

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9999.00 112 110

Minor groove platform

87

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -9999.00 110 108

Other IL

88

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -9999.00 104 102

89

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 111 109

90

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -9999.00 99 97

91

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -9999.00 111 109

92

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -9999.00 108 107

93

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -9999.00 113 111

94

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -9999.00 107 106

95

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -9999.00 109 108

UAA/GAN related

96

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 109 108

Tandem non-canonical cWW pairs

97

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -9999.00 107 107

98

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -9999.00 109 107

Kink-turn

99

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -9999.00 108 107

Intercalated tWH

100

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 110 109

101

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 108 107

102

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -9999.00 110 109

tSH-tWH-tHS-cWW

103

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 109 108

104

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -9999.00 101 100

105

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -9999.00 106 104

cWH basepair with bulged bases

106

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -9999.00 109 109

107

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -9999.00 110 109

108

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -9999.00 105 104

109

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -9999.00 106 106

Kink-turn

110

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 108 107

111

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -9999.00 109 108

Part of G-quadruplex

112

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -9999.00 106 106

113

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 109 108

114

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 110 109

115

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -9999.00 115 113

116

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -9999.00 111 109

117

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -9999.00 110 109

Double sheared; A in syn; two near cWW pairs

118

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -9999.00 107 107

Kink-turn

119

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -9999.00 110 109

120

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -9999.00 111 109

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

121

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -9999.00 107 107

UAA/GAN related

122

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -9999.00 108 108

123

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 107 107

124

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 110 109

125

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -9999.00 108 107

Kink-turn related

126

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -9999.00 110 109

127

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -9999.00 110 109

128

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -9999.00 109 108

129

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -9999.00 103 102

130

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -9999.00 106 106

Kink-turn

131

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -9999.00 111 111

Pseudoknot

132

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -9999.00 109 107

133

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 110 108

134

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -9999.00 110 109

135

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -9999.00 109 108

Kink-turn related

136

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -9999.00 109 109

137

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 109 108

Major groove minor groove platform; mini C-loop

138

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -9999.00 110 109

139

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -9999.00 109 108

Receptor of 11-nt loop-receptor motif

140

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -9999.00 112 111

Minor groove platform related

141

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 111 110

Isolated tWW turn

142

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 110 108

143

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -9999.00 110 109

AAA cross-strand stack

144

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -9999.00 107 107

145

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 108 108

Major groove intercalation

146

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -9999.00 110 110

147

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -9999.00 110 109

148

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -9999.00 105 104

149

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -9999.00 110 110

8x7 Sarcin-Ricin; G-bulge

150

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -9999.00 112 112

Kink-turn

151

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -9999.00 107 106

152

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -9999.00 106 105

153

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -9999.00 115 115

154

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -9999.00 109 108

155

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -9999.00 103 103

156

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 111 110

157

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -9999.00 108 107

C-loop

158

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -9999.00 111 109

159

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -9999.00 110 109

tSH-tHH-tHS

160

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -9999.00 110 109

Decoding loop related

161

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -9999.00 108 108

162

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -9999.00 111 110

Triple sheared

163

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 109

164

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 108

165

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -9999.00 107 106

166

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -9999.00 111 111

8x6 Sarcin-Ricin with inserted A; G-bulge

167

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 110

Single bulged C

168

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -9999.00 110 109

169

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -9999.00 109 109

170

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -9999.00 109 108

171

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -9999.00 102 101

172

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -9999.00 104 104

173

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 109 109

174

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -9999.00 110 110

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

175

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 108 107

176

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -9999.00 110 108

177

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -9999.00 112 110

178

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -9999.00 104 104

179

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -9999.00 111 111

180

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -9999.00 111 110

181

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 110 109

182

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -9999.00 111 109

Symmetric double minor groove platform

183

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 109 108

Multiple bulged bases

184

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 110 109

Isolated non-canonical cWW pair

185

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -9999.00 107 106

186

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -9999.00 108 107

Kink-turn related

187

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 109 109

188

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -9999.00 109 109

Bacterial 5S Loop E

189

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 109 108

190

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -9999.00 111 110

191

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -9999.00 105 104

192

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9999.00 109 107

193

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -9999.00 104 103

194

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 100 100

195

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -9999.00 108 107

196

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -9999.00 103 103

197

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -9999.00 108 106

tHW-tHW cross-strand stack

198

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -9999.00 100 100

Pseudoknot

199

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -9999.00 105 104

200

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -9999.00 107 107

Kink-turn related

201

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -9999.00 109 108

Receptor of 11-nt loop-receptor motif

202

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -9999.00 108 106

203

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 109

204

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 109 109

Minor groove platform

205

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -9999.00 108 107

206

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -9999.00 107 107

Kink-turn from U4

207

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -9999.00 107 106

208

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9999.00 110 109

Triple sheared

209

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -9999.00 118 118

210

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 109 109

Major groove platform; stack outside cWW

211

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -9999.00 105 104

212

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -9999.00 111 110

213

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -9999.00 110 109

UAA/GAN with extra cWW

214

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -9999.00 109 109

Triple non-canonical cWW pairs

215

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 108 106

Major groove intercalation

216

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -9999.00 107 106

217

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 107 106

218

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -9999.00 111 110

219

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 110 109

Major groove platform

220

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 109 108

221

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -9999.00 109 108

tSH-tSH-tHH-tHS

222

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -9999.00 109 107

223

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -9999.00 107 105

Kink-turn related

224

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 110 108

Minor groove platform

225

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 107 107

226

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9999.00 108 107

227

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -9999.00 107 107

Kink-turn with non-sequential stacking

228

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -9999.00 105 104

229

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -9999.00 106 106

230

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 107 107

231

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 109 108

232

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -9999.00 107 106

tSH-tHW

233

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -9999.00 103 102

234

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 110 109

Isolated non-canonical cWW contact

235

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -9999.00 111 109

236

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9999.00 109 108

237

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -9999.00 111 110

238

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 110 109

Other IL

239

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9999.00 108 106

240

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -9999.00 111 111

10x8 Sarcin-Ricin; G-bulge

241

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 113 113

Pseudoknot

242

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -9999.00 104 103

243

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 109 109

Isolated cWS basepair

244

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -9999.00 110 110

245

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 110 109

Multiple bulged bases

246

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 108 108

247

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 108

248

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -9999.00 106 106

249

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -9999.00 102 101

250

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -9999.00 114 113

251

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -9999.00 105 105

252

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -9999.00 112 111

8x6 Sarcin-Ricin with inserted Y; G-bulge

253

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 110 109

254

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -9999.00 105 105

SSU/LSU pseudoknot

255

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -9999.00 105 104

Reverse kink-turn related

256

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -9999.00 110 110

5x5 Sarcin-Ricin with intercalated A; G-bulge

257

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -9999.00 110 109

cWH basepair and non-canonical AC

258

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -9999.00 109 108

UAA/GAN

259

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -9999.00 105 105

260

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -9999.00 106 106

261

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -9999.00 107 106

262

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -9999.00 106 105

263

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -9999.00 106 105

Kink-turn

264

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -9999.00 112 111

265

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 109 108

266

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -9999.00 111 110

267

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -9999.00 95 93

268

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -9999.00 109 108

269

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -9999.00 111 110

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

270

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -9999.00 111 111

Kink-turn with embedded cWW pair

271

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 109

272

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -9999.00 105 104

Minor groove platform

273

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -9999.00 106 105

274

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -9999.00 108 107

275

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -9999.00 107 107

276

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -9999.00 103 102

277

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -9999.00 110 109

Kink-turn

278

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -9999.00 112 110

279

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 109

Stack and bulge

280

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -9999.00 111 109

281

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -9999.00 110 109

282

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 110 109

Decoding loop related

283

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -9999.00 119 119

284

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 111 111

Single bulged A

285

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -9999.00 109 108

286

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -9999.00 104 103

287

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -9999.00 100 99

288

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -9999.00 108 107

289

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -9999.00 112 112

290

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 108 107

Left turn

291

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -9999.00 110 108

292

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -9999.00 110 109

7x7 Sarcin-Ricin with intercalated A; G-bulge

293

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 110 108

294

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 109

295

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -9999.00 112 111

296

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 109 109

Isolated non-canonical cWW pair

297

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -9999.00 112 111

298

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -9999.00 106 105

299

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 110

Single stack bend

300

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -9999.00 109 108

301

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 109 108

Multiple bulged bases

302

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -9999.00 106 105

303

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -9999.00 109 109

7x6 Sarcin-Ricin; G-bulge

304

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -9999.00 110 108

C-loop with bulged stacked A's

305

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -9999.00 110 109

306

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -9999.00 109 107

307

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 107 107

308

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 107 106

Major groove intercalation

309

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -9999.00 108 108

310

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -9999.00 107 105

311

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -9999.00 110 108

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

312

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -9999.00 107 106

Kink-turn

313

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -9999.00 109 109

UAA/GAN variation

314

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -9999.00 110 108

315

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -9999.00 105 105

316

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -9999.00 107 106

317

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 109 107

318

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 108 108

319

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -9999.00 109 107

8-nt loop receptor

320

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -9999.00 110 109

321

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -9999.00 112 111

322

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -9999.00 107 107

tSH-tHW

323

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -9999.00 106 104

324

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -9999.00 110 109

325

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -9999.00 114 114

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

326

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 101 100

327

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -9999.00 107 107

328

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 109 108

329

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -9999.00 104 104

330

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -9999.00 103 102

Part of G-quadruplex

331

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9999.00 108 107

Isolated non-canonical cWW pair

332

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -9999.00 103 101

Pseudoknot

333

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 108

334

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -9999.00 112 110

335

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -9999.00 112 111

336

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -9999.00 111 109

337

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -9999.00 104 102

338

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 99 98

339

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -9999.00 110 110

Double sheared with non-canonical cWW

340

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -9999.00 103 102

341

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -9999.00 110 110

tSH-tWH-tHS

342

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -9999.00 111 111

Kink-turn related

343

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -9999.00 106 105

344

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -9999.00 109 109

Sarcin-Ricin target in LSU H95; G-bulge

345

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 111 110

346

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 110 109

347

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -9999.00 114 114

348

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 109 107

349

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -9999.00 103 102

350

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -9999.00 112 112

351

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 109 108

Minor groove platform

352

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 111 109

Isolated non-canonical cWW pair

353

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 109 108

Major groove platform with intercalated tWH

354

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 108 107

355

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -9999.00 108 107

356

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 110 109

Tandem non-canonical cWW pairs

357

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 120 120

358

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -9999.00 107 106

359

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -9999.00 111 110

tWH-tWH-tHW-tHW

360

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -9999.00 110 109

361

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -9999.00 108 106

362

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 109 108

363

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -9999.00 110 109

364

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -9999.00 108 107

180 degree turn

365

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 111 110

366

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 110

367

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9999.00 110 109

Double sheared

368

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -9999.00 108 107

369

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 110 109

Isolated cWH basepair

370

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 111 109

371

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -9999.00 108 107

Reverse kink-turn

372

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9999.00 110 110

Double sheared

373

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -9999.00 107 106

374

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -9999.00 109 109

375

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -9999.00 109 108

376

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 110 109

377

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 108 107

Isolated non-canonical cWW pair

378

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -9999.00 108 107

379

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 108 107

380

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 109 108

Bulged stacked bases

381

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 110

Major groove platform

382

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -9999.00 109 108

383

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9999.00 109 108

384

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 110 108

385

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -9999.00 110 109

Quadruple sheared

386

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -9999.00 101 100

Kink-turn

387

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -9999.00 114 113

388

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -9999.00 108 108

389

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -9999.00 110 109

390

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -9999.00 109 109

391

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -9999.00 103 103

392

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -9999.00 105 105

tSH-tHS-tHW

393

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -9999.00 111 110

394

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -9999.00 110 110

8x7 Sarcin-Ricin; G-bulge

395

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -9999.00 101 101

396

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -9999.00 113 113

397

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -9999.00 112 111

398

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -9999.00 110 109

Triple sheared with non-canonical cWW

399

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -9999.00 106 105

Reverse kink-turn related

400

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 109 108

C-loop

401

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 109 109

Major groove platform with intercalation

402

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -9999.00 108 108

8x6 Sarcin-Ricin with bulged A; G-bulge

403

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -9999.00 110 109

404

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -9999.00 108 107

405

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -9999.00 107 106

Kink-turn

406

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -9999.00 110 109

407

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -9999.00 109 109

UAA/GAN with extra stack

408

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -9999.00 110 108

UAA/GAN with tHH

409

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 108 108

410

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -9999.00 108 107

411

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 110 110

Single bulged G

Coloring options: