JAR3D on RF03022

Rfam family RF03022 maps to these 9 chains: 8UB7|1|I, 8UB8|1|I, 8UB9|1|I, 8UBA|1|I, 8UBB|1|I, 8UBC|1|I, 8UBD|1|I, 8UBE|1|I, 8UBF|1|I See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 7 Internal loop

Column numbers: 116-122, 170-175 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    UGU-AUU*A--UUG   21

    
    UAG-AAC*G--GAG    9

    
    UGU-AUU*A---UG    8

    
    CAAUGGC*G--CUG    4

    
    CAU-AAC*G--GAG    4

    
    -AA-AAG*C--AAG    4

    
    UGU--AU*A--UUG    4

    
    CAA-UCU*G--GCA    3

    
    CAG-AAC*G--GAG    3

    
    CAU-AAC*G--CAG    3

    
    UAG-AAC*G--GUG    3

    
    UAG-AGC*G--CGG    3

    
    CAAUGGC*G--CCG    2

    
    CAA-GCU*A--GAA    2

    
    CAG-AGC*G--CGG    2

    
    CAU-AAC*G--UGG    2

    
    UAA-AGC*G--CGA    2

    
    GA--AAC*G--CGC    2

    
    UGU-AUU*UCAUUA    1

    
    CAUAAAG*C--UAG    1

    
    UGU-AUU*A-UCUA    1

    
    AAA-AAC*G--GGU    1

    
    AUG-UAU*A--UGU    1

    
    CAA-AAC*G--AGG    1

    
    CAG-AAC*G--AGG    1

    
    CAG-AAC*G--CAG    1

    
    CAG-AAG*C--UGG    1

    
    CAU-AAC*G--AAG    1

    
    CAU-AAC*G--GGG    1

    
    CAU-AAG*C--UAG    1

    
    CAU-AGC*G--CGG    1

    
    GCA-AGC*G--UAC    1

    
    UAA-AGC*G--AGA    1

    
    UAC-AGC*G--CGA    1

    
    UAG-AAC*G--AGG    1

    
    UAG-AAC*G--CGG    1

    
    UAG-AGC*G--CAG    1

    
    UAU-AGC*G--CGG    1

    
    UGU-ACA*A--UUG    1

    
    UGU-UUU*A--UUG    1

    
    -AA-AAG*U--AAG    1

    
    AA--GUG*C--AAA    1

    
    CAC-UG-*A--CAU    1

    
    UGU--UU*A--UUG    1

    
    UGU-A-U*A--UUG    1

    
    -A--GUA*G--AAG    1

    
    -AG-AAC*G---CG    1

    
    -AG-AGC*G---CG    1

    
    AGA-G-C*G---CG    1

    
    ----AGC*G--UCA    1

Click on headings to reorder table

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_34737.1 View motif instance in 3D Basepair signature: cWW-L-cHW-L-cWW-L	38.05	-19.76	5	4
2	Motif group IL_05192.4 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L	32.74	-19.01	6	4
3	Motif group IL_70096.1 View motif instance in 3D Basepair signature: cWW-L-cWW-cWW	30.97	-20.54	6	4	Kink-turn related
4	Motif group IL_26728.3 View motif instance in 3D Basepair signature: cWW-cSH-R-cSH-cWW-cWW	26.55	-48.31	6	4
5	Motif group IL_76758.2 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	23.89	-53.65	7	4	Intercalated tWH
6	Motif group IL_29471.1 View motif instance in 3D Basepair signature: cWW-cWW-L-tHS-L-cWW	22.12	-39.60	6	4
7	Motif group IL_09908.1 View motif instance in 3D Basepair signature: cWW-L-tHH-L-R-L-cWW-L	21.24	-67.58	6	5	Reverse kink-turn
8	Motif group IL_56317.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	19.47	-39.30	8	5
9	Motif group IL_21667.1 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-cWW	19.47	-50.11	7	5
10	Motif group IL_45444.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	18.58	-33.08	6	4
11	Motif group IL_90346.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	16.81	-34.96	5	4
12	Motif group IL_96332.5 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW-L	14.16	-45.35	6	4
13	Motif group IL_47108.1 View motif instance in 3D Basepair signature: cWW-L-R-L-tHH-L-cWW	12.39	-36.10	6	3
14	Motif group IL_70411.2 View motif instance in 3D Basepair signature: cWW-tSH-L-tHH-L-cWW	12.39	-56.93	5	3
15	Motif group IL_48444.6 View motif instance in 3D Basepair signature: cWW-L-R-cWW-cWW	12.39	-70.05	6	3
16	Motif group IL_22829.2 View motif instance in 3D Basepair signature: cWW-L-tHS-L-R-L-cWW-L	10.62	-43.35	7	3
17	Motif group IL_14177.2 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	10.62	-68.86	6	4
18	Motif group IL_69145.3 View motif instance in 3D Basepair signature: cWW-L-cWW-L-R-L-R-R	8.85	-47.26	7	5	Pseudoknot
19	Motif group IL_10484.1 View motif instance in 3D Basepair signature: cWW-tSH-tHS-cWW	8.85	-93.75	5	3	Double sheared
20	Motif group IL_11344.2 View motif instance in 3D Basepair signature: cWW-cSS-L-cWW	7.96	-29.06	5	4	180 degree turn
21	Motif group IL_33323.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	7.96	-95.12	6	4
22	Motif group IL_49612.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L	7.08	-34.46	7	4
23	Motif group IL_61299.4 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	7.08	-85.65	5	3
24	Motif group IL_97273.1 View motif instance in 3D Basepair signature: cWW-tSH-cWW-L-cWW-L	7.08	-92.05	6	4
25	Motif group IL_21200.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-L-cWW-L	6.19	-49.94	6	4	tSH-tHW
26	Motif group IL_74367.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-cWW	6.19	-79.93	5	4
27	Motif group IL_91636.1 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-cWW-L-L	5.31	-42.98	7	4
28	Motif group IL_33141.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L	5.31	-55.36	9	6
29	Motif group IL_12566.4 View motif instance in 3D Basepair signature: cWW-L-tHS-L-cWW-L	5.31	-97.70	6	4
30	Motif group IL_75294.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	4.42	-59.15	6	4
31	Motif group IL_65718.4 View motif instance in 3D Basepair signature: cWW-cSH-cWS-cWW-cWW	4.42	-63.42	6	4
32	Motif group IL_68909.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	4.42	-71.91	5	3
33	Motif group IL_81522.2 View motif instance in 3D Basepair signature: cWW-L-L-cWW	4.42	-108.36	6	4	Major groove minor groove platform with intercalation; mini C-loop
34	Motif group IL_23774.1 View motif instance in 3D Basepair signature: cWW-L-R-L-tHS-cWW	4.42	-112.93	5	3	UAA/GAN variation
35	Motif group IL_77691.5 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-cWW	4.42	-123.57	5	3	UAA/GAN related
36	Motif group IL_97697.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L	3.54	-69.49	8	5	Reverse turn
37	Motif group IL_42778.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW	3.54	-70.10	7	5
38	Motif group IL_71598.1 View motif instance in 3D Basepair signature: cWW-tSH-L-cWW-L	3.54	-90.60	7	4
39	Motif group IL_51265.3 View motif instance in 3D Basepair signature: cWW-tSS-tHS-tSH-cWW-L	3.54	-99.24	6	4	Kink-turn from U4
40	Motif group IL_58112.2 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cWW	3.54	-100.54	5	3
41	Motif group IL_99498.1 View motif instance in 3D Basepair signature: cWW-L-R-tHW-cWW	2.65	-44.66	6	5
42	Motif group IL_70335.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	2.65	-58.84	6	4
43	Motif group IL_43622.1 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L	2.65	-63.80	6	4
44	Motif group IL_33623.1 View motif instance in 3D Basepair signature: cWW-L-tHH-L-R-L-cWW-L-R	1.77	-62.34	8	5
45	Motif group IL_62012.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW	1.77	-62.75	6	4	Decoding loop related
46	Motif group IL_82683.2 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	1.77	-66.76	6	4
47	Motif group IL_73759.1 View motif instance in 3D Basepair signature: cWW-cSH-tHS-cWH-cHW-cWW	1.77	-70.06	8	5	Part of G-quadruplex
48	Motif group IL_31558.1 View motif instance in 3D Basepair signature: cWW-L-tHS-L-R-cWW	1.77	-76.31	6	4
49	Motif group IL_11399.2 View motif instance in 3D Basepair signature: cWW-cHW-L-R-L-cWW	1.77	-84.43	6	3
50	Motif group IL_38634.5 View motif instance in 3D Basepair signature: cWW-cWH-L-R-cWW	1.77	-87.72	6	3	cWH basepair and non-canonical AC
51	Motif group IL_63519.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cSH-cWW	1.77	-96.30	6	4
52	Motif group IL_64231.5 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW	1.77	-105.03	4	3
53	Motif group IL_85033.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW	1.77	-136.96	4	2	Tandem non-canonical cWW pairs
54	Motif group IL_66997.2 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	1.77	-137.03	6	3
55	Motif group IL_44874.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-L-cWW-L-L	0.88	-47.30	6	4	tSH-tHW
56	Motif group IL_59258.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW	0.88	-58.15	9	5
57	Motif group IL_98347.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.88	-74.29	7	4
58	Motif group IL_25573.1 View motif instance in 3D Basepair signature: cWW-tSW-L-cWW-L-L	0.88	-109.89	7	3
59	Motif group IL_10389.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW	0.88	-118.98	6	4
60	Motif group IL_22373.1 View motif instance in 3D Basepair signature: cWW-L-R-cSH-cSH-cWW	0.88	-145.63	7	5	8-nt loop receptor
61	Motif group IL_94684.1 View motif instance in 3D Basepair signature: cWW-tWH-R-L-cWW-L-L	0.88	-1237.41	6	3
62	Motif group IL_25186.4 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-cWW	0.00	-42.17	6	4
63	Motif group IL_85222.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L	0.00	-55.19	8	6
64	Motif group IL_01038.1 View motif instance in 3D Basepair signature: cWW-tWH-L-R-tHS-cWW	0.00	-62.18	6	5	UAA/GAN with extra stack
65	Motif group IL_70627.3 View motif instance in 3D Basepair signature: cWW-L-R-tHW-cWW	0.00	-63.07	7	4	UAA/GAN related
66	Motif group IL_88082.1 View motif instance in 3D Basepair signature: cWW-L-tSS-L-cWW-L	0.00	-68.81	7	4
67	Motif group IL_06300.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-69.64	6	3
68	Motif group IL_51191.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	0.00	-74.90	7	5
69	Motif group IL_91920.1 View motif instance in 3D Basepair signature: cWW-cWW-tHH-cWW	0.00	-75.01	7	3
70	Motif group IL_82706.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-75.17	8	5
71	Motif group IL_07173.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-75.19	6	4
72	Motif group IL_94351.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-tHS-cWW	0.00	-75.31	8	5
73	Motif group IL_82292.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-75.76	7	5
74	Motif group IL_59302.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-76.53	6	4
75	Motif group IL_61242.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-cWW	0.00	-79.41	7	5
76	Motif group IL_09570.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R	0.00	-79.54	8	6
77	Motif group IL_21001.1 View motif instance in 3D Basepair signature: cWW-L-R-tHW-L-cWW	0.00	-79.93	7	5
78	Motif group IL_07469.2 View motif instance in 3D Basepair signature: cWW-tSH-cWW-cSH-R-cWW	0.00	-80.01	7	4
79	Motif group IL_01176.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW	0.00	-80.90	8	6
80	Motif group IL_69229.3 View motif instance in 3D Basepair signature: cWW-L-tSH-L-tHS-cWW-cWW	0.00	-82.30	7	5	Kink-turn
81	Motif group IL_73789.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-83.70	5	4
82	Motif group IL_44438.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-84.01	6	5
83	Motif group IL_53448.1 View motif instance in 3D Basepair signature: cWW-tWH-cSH-cWW	0.00	-84.14	6	3	Receptor of 11-nt loop-receptor motif
84	Motif group IL_77870.1 View motif instance in 3D Basepair signature: cWW-L-R-L-tHS-L-cWW-L-cWW	0.00	-84.22	7	5
85	Motif group IL_29223.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-cWW-cWW	0.00	-84.30	9	5
86	Motif group IL_85652.1 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L	0.00	-84.60	8	6
87	Motif group IL_09044.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-L-tHS-cWW	0.00	-84.65	7	6
88	Motif group IL_69000.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW-L	0.00	-86.35	8	5
89	Motif group IL_74957.1 View motif instance in 3D Basepair signature: cWW-L-cHW-L-cWW-L	0.00	-86.65	6	5	cWH basepair with bulged bases
90	Motif group IL_64842.1 View motif instance in 3D Basepair signature: cWW-L-tWH-L-cWW-L-cSH	0.00	-86.94	7	5
91	Motif group IL_67767.4 View motif instance in 3D Basepair signature: cWW-tWH-cWW-cSH-cWW	0.00	-87.16	6	3	Receptor of 11-nt loop-receptor motif
92	Motif group IL_18472.4 View motif instance in 3D Basepair signature: cWW-tSW-R-L-R-L-R-cWW	0.00	-87.25	8	5
93	Motif group IL_06691.1 View motif instance in 3D Basepair signature: cWW-cWS-L-R-L-R-cWW-L	0.00	-87.41	7	5
94	Motif group IL_91592.1 View motif instance in 3D Basepair signature: cWW-L-tHH-L-cWW-L-L	0.00	-88.32	6	5
95	Motif group IL_16218.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-89.50	6	4
96	Motif group IL_99646.2 View motif instance in 3D Basepair signature: cWW-tWH-tHS-cWW	0.00	-90.01	5	2	tSH-tHW
97	Motif group IL_80231.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-tHS-cWW	0.00	-90.61	8	4	Other IL
98	Motif group IL_68574.4 View motif instance in 3D Basepair signature: cWW-tHH-tHS-cWW	0.00	-90.73	5	3
99	Motif group IL_68405.1 View motif instance in 3D Basepair signature: cWW-cSS-L-tWH-tHW-cWW-cWW	0.00	-92.33	7	6	Kink-turn related
100	Motif group IL_54041.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tWH-L-cWW	0.00	-92.54	7	5	tHW-tHW cross-strand stack
101	Motif group IL_31084.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L	0.00	-95.27	8	6
102	Motif group IL_19668.1 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L	0.00	-95.63	6	4	Isolated non-canonical cWW pair
103	Motif group IL_88269.4 View motif instance in 3D Basepair signature: cWW-tWW-cSH-tWH-tHS-cWW	0.00	-96.66	7	5	6x5 Sarcin-Ricin; G-bulge
104	Motif group IL_37603.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW-L-L	0.00	-97.06	7	6
105	Motif group IL_42314.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-98.11	6	3
106	Motif group IL_80412.1 View motif instance in 3D Basepair signature: cWW-tSW-L-cWW-L-L-R-L	0.00	-98.38	9	6
107	Motif group IL_78349.3 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L	0.00	-99.42	7	6
108	Motif group IL_86136.1 View motif instance in 3D Basepair signature: cWW-tSH-L-cWW-L-L-R-L	0.00	-99.70	7	5
109	Motif group IL_78472.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L	0.00	-100.39	10	7
110	Motif group IL_33886.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-R-L-R-cWW	0.00	-100.88	8	5	Kink-turn with embedded cWW pair
111	Motif group IL_95811.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW-L-R-L	0.00	-100.92	7	5	Vitamin B12 Aptamer
112	Motif group IL_41853.1 View motif instance in 3D Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L	0.00	-102.11	8	6
113	Motif group IL_97631.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-tHS-cWW	0.00	-103.59	8	5	Triple sheared related
114	Motif group IL_67780.1 View motif instance in 3D Basepair signature: cWW-cSH-L-R-L-L-R-L	0.00	-104.68	6	4
115	Motif group IL_89312.1 View motif instance in 3D Basepair signature: cWW-tSH-L-cWS-cWW-L	0.00	-105.83	9	6
116	Motif group IL_20047.1 View motif instance in 3D Basepair signature: cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW	0.00	-108.49	8	6
117	Motif group IL_74051.1 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-tHS-cWW-L	0.00	-110.03	8	5	Kink-turn
118	Motif group IL_51479.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-110.17	5	2
119	Motif group IL_84251.1 View motif instance in 3D Basepair signature: cWW-L-tHS-cWW	0.00	-111.05	6	4
120	Motif group IL_04736.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-114.15	8	6
121	Motif group IL_76319.5 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-114.85	6	4
122	Motif group IL_24499.1 View motif instance in 3D Basepair signature: cWW-cWS-L-R-L-R-cWW-L-cSH-L	0.00	-116.12	8	5
123	Motif group IL_12697.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-tHS-cWW	0.00	-116.29	8	5
124	Motif group IL_16665.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW	0.00	-116.71	10	7
125	Motif group IL_23038.1 View motif instance in 3D Basepair signature: cWW-L-R-tWH-L-R-L-cWW-cWW	0.00	-117.16	9	7
126	Motif group IL_66798.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHS-cWW	0.00	-117.53	5	4	AAA cross-strand stack
127	Motif group IL_49061.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-118.11	5	3
128	Motif group IL_00981.1 View motif instance in 3D Basepair signature: cWW-tWH-tHH-tHS-cWW	0.00	-118.49	8	4	UAA/GAN with tHH
129	Motif group IL_47087.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-cWW-tWH-L-L	0.00	-118.72	8	5	Kink-turn related
130	Motif group IL_95570.1 View motif instance in 3D Basepair signature: cWW-cWH-R-L-cWW	0.00	-119.49	6	4
131	Motif group IL_31561.1 View motif instance in 3D Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW	0.00	-119.50	9	7
132	Motif group IL_61286.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-tWH-L-tHS-cWW	0.00	-120.28	8	6	8x6 Sarcin-Ricin with inserted A; G-bulge
133	Motif group IL_77278.1 View motif instance in 3D Basepair signature: cWW-tWW-L-tWW-cWW-L	0.00	-120.83	9	7
134	Motif group IL_16458.4 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-cWW	0.00	-122.85	7	6	Sarcin-Ricin target in LSU H95; G-bulge
135	Motif group IL_47972.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-123.24	6	4
136	Motif group IL_70801.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-tWW-L-R-L-cWW	0.00	-123.80	8	6
137	Motif group IL_04638.3 View motif instance in 3D Basepair signature: cWW-tSH-tHW-tHS-cSH-cWW-L	0.00	-124.38	8	6	tSH-tHS-tHW
138	Motif group IL_25463.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-124.82	5	3
139	Motif group IL_89984.3 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-125.82	7	4
140	Motif group IL_88116.2 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-R-L-R-cWW-cWW	0.00	-126.77	8	7
141	Motif group IL_38507.2 View motif instance in 3D Basepair signature: cWW-tWH-L-tHS-cWW	0.00	-126.92	6	3	UAA/GAN
142	Motif group IL_28564.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-127.32	6	4
143	Motif group IL_11415.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L	0.00	-127.73	7	5
144	Motif group IL_77045.1 View motif instance in 3D Basepair signature: cWW-L-tSW-L-tHW-cWW-L	0.00	-128.20	9	6	Kink-turn
145	Motif group IL_09129.2 View motif instance in 3D Basepair signature: cWW-L-R-tWH-L-R-L-tWW-cWW	0.00	-129.33	9	8
146	Motif group IL_62654.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-tHS-cWW	0.00	-130.09	8	5	tSH-tHH-tHS
147	Motif group IL_19102.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-130.72	5	3
148	Motif group IL_01994.1 View motif instance in 3D Basepair signature: cWW-cWH-tHS-cWW-cSH-cWW	0.00	-132.29	6	4
149	Motif group IL_74184.1 View motif instance in 3D Basepair signature: cWW-L-tHS-L-cWW-L-L-L	0.00	-132.36	8	6
150	Motif group IL_52743.1 View motif instance in 3D Basepair signature: cWW-tSW-L-cSW-L-cWW-L	0.00	-132.38	8	4
151	Motif group IL_37752.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHW-R-L-cWW	0.00	-133.85	10	8
152	Motif group IL_57188.5 View motif instance in 3D Basepair signature: cWW-tWW-L-tWW-cWW-cSH	0.00	-134.12	8	5	Kink-turn related
153	Motif group IL_71294.3 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-135.08	7	5	Double sheared; A in syn; two near cWW pairs
154	Motif group IL_18487.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-cWW	0.00	-135.58	8	7
155	Motif group IL_13404.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW	0.00	-136.08	5	4	Tandem non-canonical cWW pairs
156	Motif group IL_94910.1 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-R-R-L-cWW-L	0.00	-136.39	7	6	Kink-turn
157	Motif group IL_80926.1 View motif instance in 3D Basepair signature: cWW-cWW-tSH-tHS-L-cWW	0.00	-137.89	7	6
158	Motif group IL_34822.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-138.03	9	6
159	Motif group IL_89021.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHS-cWW	0.00	-138.98	6	3	UAA/GAN
160	Motif group IL_38969.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L	0.00	-139.37	9	8	Reverse kink-turn related
161	Motif group IL_69271.3 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW-L-L-R	0.00	-139.80	9	7
162	Motif group IL_57881.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-140.72	6	4	Multiple bulged bases
163	Motif group IL_96788.1 View motif instance in 3D Basepair signature: cWW-tHW-tHS-cWW-cWW	0.00	-141.80	6	5
164	Motif group IL_55953.3 View motif instance in 3D Basepair signature: cWW-tSH-tHS-R-L-L-R-cWW	0.00	-142.04	8	5
165	Motif group IL_44325.1 View motif instance in 3D Basepair signature: cWW-cWH-cWW-L	0.00	-142.08	8	4
166	Motif group IL_85498.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R	0.00	-143.06	9	7
167	Motif group IL_85630.1 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L-cWW-L	0.00	-143.12	8	8
168	Motif group IL_54177.4 View motif instance in 3D Basepair signature: cWW-cSW-tWH-L-R-L-R-tHS-cWW	0.00	-143.72	9	7
169	Motif group IL_54896.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R	0.00	-144.09	9	7
170	Motif group IL_13358.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L	0.00	-144.58	9	8
171	Motif group IL_70923.9 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-tHS-tHS-cWW	0.00	-144.60	6	5	Kink-turn
172	Motif group IL_04785.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cWW	0.00	-145.69	5	4
173	Motif group IL_69440.3 View motif instance in 3D Basepair signature: cWW-L-R-cSH-cWW	0.00	-145.69	6	3
174	Motif group IL_28788.1 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-146.08	6	4
175	Motif group IL_12745.1 View motif instance in 3D Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW	0.00	-146.99	8	6	tWH-tWH-tHW-tHW
176	Motif group IL_61341.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-147.23	5	3
177	Motif group IL_61476.2 View motif instance in 3D Basepair signature: cWW-tSH-L-cWW-L	0.00	-147.25	5	3
178	Motif group IL_01488.3 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-R-tHS-L-cWW	0.00	-148.35	6	5	Kink-turn
179	Motif group IL_06549.2 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-149.05	4	3
180	Motif group IL_41756.4 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW-L	0.00	-150.25	9	6	8x6 Sarcin-Ricin with inserted Y; G-bulge
181	Motif group IL_24254.1 View motif instance in 3D Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW	0.00	-152.11	8	6	7x6 Sarcin-Ricin with UU cWW pair; G-bulge
182	Motif group IL_49767.8 View motif instance in 3D Basepair signature: cWW-cWW-tWH-L-tHS-cWW	0.00	-153.15	6	5	UAA/GAN with extra cWW
183	Motif group IL_54050.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L	0.00	-153.26	10	8
184	Motif group IL_49867.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-tHW-R-L-L-cWW	0.00	-154.92	9	7
185	Motif group IL_47346.2 View motif instance in 3D Basepair signature: cWW-tSH-L-R-tHH-tHS-cWW	0.00	-155.42	9	5	tSH-tSH-tHH-tHS
186	Motif group IL_58126.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW	0.00	-155.59	8	7
187	Motif group IL_02349.4 View motif instance in 3D Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW	0.00	-156.14	9	7	8x6 Sarcin-Ricin with bulged A; G-bulge
188	Motif group IL_88974.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R	0.00	-158.22	9	7
189	Motif group IL_13874.1 View motif instance in 3D Basepair signature: cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW	0.00	-159.01	9	7
190	Motif group IL_69986.1 View motif instance in 3D Basepair signature: cWW-cHW-L-R-L-R-cWH-cWW	0.00	-160.31	7	5
191	Motif group IL_58350.1 View motif instance in 3D Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW-L	0.00	-160.36	11	7
192	Motif group IL_78800.1 View motif instance in 3D Basepair signature: cWW-cSH-L-cWW	0.00	-161.23	7	4
193	Motif group IL_41344.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-162.81	5	4
194	Motif group IL_09705.15 View motif instance in 3D Basepair signature: cWW-tSH-tHS-cWW	0.00	-163.63	4	3	Double sheared
195	Motif group IL_68243.1 View motif instance in 3D Basepair signature: cWW-L-cWW-cWW-R-L-tHS-cWW	0.00	-164.73	9	7
196	Motif group IL_74746.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW	0.00	-164.95	10	8
197	Motif group IL_04600.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-L-R-cWW-cWW	0.00	-165.78	10	7
198	Motif group IL_25872.4 View motif instance in 3D Basepair signature: cWW-cWW-cWH-cWW	0.00	-166.30	6	3
199	Motif group IL_22854.4 View motif instance in 3D Basepair signature: cWW-tSH-cWW-tHW-R-L-cWW-L-L-R	0.00	-166.40	9	6
200	Motif group IL_89099.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW	0.00	-168.00	8	6	Other IL
201	Motif group IL_43644.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cWW	0.00	-168.27	7	4	Other IL
202	Motif group IL_95727.1 View motif instance in 3D Basepair signature: cWW-L-tSH-L-tHW-tHS-R-cWW-L	0.00	-170.07	8	7	Kink-turn
203	Motif group IL_29198.2 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cSH-R-tWH-tHS-cWW	0.00	-171.16	8	6	7x7 Sarcin-Ricin with intercalated A; G-bulge
204	Motif group IL_02203.1 View motif instance in 3D Basepair signature: cWW-cSW-cWW-cWW	0.00	-171.54	7	5
205	Motif group IL_51387.2 View motif instance in 3D Basepair signature: cWW-cSH-cWW-cWW	0.00	-172.75	4	3
206	Motif group IL_99692.2 View motif instance in 3D Basepair signature: cWW-tSS-tSH-L-R-R-L-cWW-L-L	0.00	-172.87	8	6	Kink-turn
207	Motif group IL_26307.2 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW	0.00	-173.39	7	6	7x6 Sarcin-Ricin; G-bulge
208	Motif group IL_85536.2 View motif instance in 3D Basepair signature: cWW-tSH-L-R-tHS-cWW-cWW	0.00	-173.57	6	4
209	Motif group IL_64403.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-L-R	0.00	-173.92	10	8
210	Motif group IL_80209.1 View motif instance in 3D Basepair signature: cWW-cHW-L-cWW-L-L-R-L-R-L	0.00	-174.87	9	7
211	Motif group IL_92446.2 View motif instance in 3D Basepair signature: cWW-cWW-R-L-L	0.00	-175.86	5	4
212	Motif group IL_46387.1 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L	0.00	-177.09	6	4
213	Motif group IL_15698.3 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-177.15	5	3
214	Motif group IL_77658.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW	0.00	-177.32	5	4	Tandem non-canonical cWW pairs
215	Motif group IL_90351.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-178.28	5	3
216	Motif group IL_55516.2 View motif instance in 3D Basepair signature: cWW-cWW-cSH-cWW	0.00	-179.01	6	3
217	Motif group IL_64900.1 View motif instance in 3D Basepair signature: cWW-cWW-tSS-tSH-L-tHS-R-cWW-L	0.00	-182.47	8	7	Kink-turn
218	Motif group IL_31915.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW	0.00	-182.57	11	9
219	Motif group IL_36516.3 View motif instance in 3D Basepair signature: cWW-cWW-cSH-cWW-L	0.00	-183.53	5	3
220	Motif group IL_82741.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-185.11	6	4
221	Motif group IL_04021.2 View motif instance in 3D Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW	0.00	-185.83	8	6	Triple sheared with non-canonical cWW
222	Motif group IL_99358.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-185.85	5	4
223	Motif group IL_42231.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-cWW-cSS-L	0.00	-186.36	10	8
224	Motif group IL_04307.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R	0.00	-188.87	10	8
225	Motif group IL_80398.1 View motif instance in 3D Basepair signature: cWW-L-cSW-L-R-cWW	0.00	-189.11	5	4	Minor groove platform
226	Motif group IL_73002.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R	0.00	-189.87	12	10
227	Motif group IL_69543.3 View motif instance in 3D Basepair signature: cWW-tSH-L-R-tSS-tHS-L-R-cWW	0.00	-191.32	6	6
228	Motif group IL_49751.4 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW-cWW	0.00	-191.36	5	3	Triple non-canonical cWW pairs
229	Motif group IL_07785.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-191.40	5	4	Isolated non-canonical cWW pair
230	Motif group IL_99380.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	0.00	-191.61	7	5
231	Motif group IL_60657.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R	0.00	-193.92	10	8
232	Motif group IL_76308.6 View motif instance in 3D Basepair signature: cWW-tSH-tHW-tHS-cWW-cWW	0.00	-194.13	6	5	tSH-tWH-tHS-cWW
233	Motif group IL_87284.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW	0.00	-194.61	7	6	tSH-tHW-tWH-tHS
234	Motif group IL_32016.1 View motif instance in 3D Basepair signature: cWW-tSH-tSH-tSS-tHS-L-R-cWW	0.00	-195.47	8	6	Kink-turn
235	Motif group IL_55917.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	0.00	-195.73	7	7
236	Motif group IL_43858.1 View motif instance in 3D Basepair signature: cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW	0.00	-195.82	9	8
237	Motif group IL_25412.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-196.54	8	5	Major groove intercalation
238	Motif group IL_61440.1 View motif instance in 3D Basepair signature: cWW-tSH-tHS-tWS-cWW	0.00	-197.21	6	5	Triple sheared
239	Motif group IL_84694.2 View motif instance in 3D Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW	0.00	-201.32	10	9	tSH-tHW-tHH-tHS
240	Motif group IL_17948.2 View motif instance in 3D Basepair signature: cWW-L-R-tSH-tHS-cWW	0.00	-202.12	5	3	Double sheared with non-canonical cWW
241	Motif group IL_65594.1 View motif instance in 3D Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW	0.00	-203.57	9	8	8x7 Sarcin-Ricin; G-bulge
242	Motif group IL_30730.1 View motif instance in 3D Basepair signature: cWW-cSH-L-R-L-cWW-L-R	0.00	-204.14	9	7
243	Motif group IL_59049.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L	0.00	-209.45	12	9
244	Motif group IL_70376.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-211.55	7	5
245	Motif group IL_05472.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L	0.00	-213.66	12	9
246	Motif group IL_04346.10 View motif instance in 3D Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW	0.00	-214.08	8	7	8x7 Sarcin-Ricin; G-bulge
247	Motif group IL_28304.1 View motif instance in 3D Basepair signature: cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW	0.00	-215.53	12	10
248	Motif group IL_80604.6 View motif instance in 3D Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW	0.00	-215.63	10	7
249	Motif group IL_81392.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L	0.00	-215.85	14	13
250	Motif group IL_08770.1 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-216.40	6	4
251	Motif group IL_87290.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L	0.00	-217.69	13	12	Kink-turn related
252	Motif group IL_36729.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW	0.00	-218.03	11	9
253	Motif group IL_43547.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW	0.00	-218.08	11	10	10x8 Sarcin-Ricin; G-bulge
254	Motif group IL_46086.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	0.00	-218.09	7	5
255	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-218.57	5	4	Multiple bulged bases
256	Motif group IL_87211.1 View motif instance in 3D Basepair signature: cWW-cSW-L-cWW-L	0.00	-218.73	6	4
257	Motif group IL_06136.2 View motif instance in 3D Basepair signature: cWW-tHS-cWW-tHS-tSH-tSH-cWW	0.00	-219.87	6	4	Quadruple sheared
258	Motif group IL_17136.7 View motif instance in 3D Basepair signature: cWW-tSH-tHW-tHS-cWW	0.00	-220.59	5	3	tSH-tWH-tHS
259	Motif group IL_89047.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW	0.00	-220.86	11	9
260	Motif group IL_59724.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW	0.00	-221.38	9	7	8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
261	Motif group IL_84665.1 View motif instance in 3D Basepair signature: cWW-L-cSW-cWW-L-L-R-L-R-L-R-L	0.00	-221.48	10	9
262	Motif group IL_92634.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-223.75	5	4
263	Motif group IL_21630.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW	0.00	-224.09	11	9
264	Motif group IL_57741.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW	0.00	-226.15	11	9
265	Motif group IL_15107.1 View motif instance in 3D Basepair signature: cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW	0.00	-228.32	13	12
266	Motif group IL_14688.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-230.11	5	4	Isolated non-canonical cWW pair
267	Motif group IL_91698.1 View motif instance in 3D Basepair signature: cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW	0.00	-230.77	11	9
268	Motif group IL_31737.3 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-231.65	5	3	Stack and bulge
269	Motif group IL_34470.3 View motif instance in 3D Basepair signature: cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L	0.00	-231.98	11	9	9x8 Sarcin-Ricin with GA cWW pair; G-bulge
270	Motif group IL_33711.1 View motif instance in 3D Basepair signature: cWW-cSH-cWW-L-L-R-L	0.00	-232.20	8	6	Minor groove platform
271	Motif group IL_61438.4 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-233.07	6	4
272	Motif group IL_83389.2 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-234.35	5	4
273	Motif group IL_65851.3 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L	0.00	-234.89	8	6
274	Motif group IL_04073.1 View motif instance in 3D Basepair signature: cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L	0.00	-235.66	13	11
275	Motif group IL_43467.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L	0.00	-236.21	13	11	Pseudoknot
276	Motif group IL_57744.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-237.01	4	3	Isolated non-canonical cWW pair
277	Motif group IL_88017.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L	0.00	-238.52	7	5
278	Motif group IL_47078.3 View motif instance in 3D Basepair signature: cWW-cWS-L-cWW-L	0.00	-240.94	6	4	Minor groove platform
279	Motif group IL_21173.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L	0.00	-241.52	9	7
280	Motif group IL_46112.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L	0.00	-242.08	9	7
281	Motif group IL_81731.1 View motif instance in 3D Basepair signature: cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L	0.00	-243.45	12	9
282	Motif group IL_53596.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L	0.00	-244.96	9	7
283	Motif group IL_67623.1 View motif instance in 3D Basepair signature: cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW	0.00	-245.74	9	7	Minor groove platform related
284	Motif group IL_17069.5 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW	0.00	-248.17	10	7	Kink-turn related
285	Motif group IL_27393.10 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R	0.00	-251.09	7	6
286	Motif group IL_82968.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L	0.00	-251.56	8	7
287	Motif group IL_17973.1 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R	0.00	-253.05	14	13
288	Motif group IL_50730.2 View motif instance in 3D Basepair signature: cWW-tSH-tHS-tHS-cWW	0.00	-253.68	4	3	Triple sheared
289	Motif group IL_37015.1 View motif instance in 3D Basepair signature: cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L	0.00	-255.07	8	6	Kink-turn
290	Motif group IL_19897.3 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-tWH-R-L	0.00	-256.71	8	7
291	Motif group IL_70670.1 View motif instance in 3D Basepair signature: cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L	0.00	-258.15	12	10	9x9 Sarcin-Ricin with pseudoknotted region; G-bulge
292	Motif group IL_38862.4 View motif instance in 3D Basepair signature: cWW-cSH-R-tWH-tHS-cWW	0.00	-258.31	5	4	5x5 Sarcin-Ricin with intercalated A; G-bulge
293	Motif group IL_96371.1 View motif instance in 3D Basepair signature: cWW-tHH-cWW	0.00	-258.83	7	5
294	Motif group IL_28026.3 View motif instance in 3D Basepair signature: cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW	0.00	-259.54	10	8
295	Motif group IL_26598.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R	0.00	-264.26	8	6
296	Motif group IL_31531.3 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-267.02	5	3	Decoding loop related
297	Motif group IL_85879.1 View motif instance in 3D Basepair signature: cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW	0.00	-267.86	11	9
298	Motif group IL_96759.1 View motif instance in 3D Basepair signature: cWW-tSH-tWW-cWW	0.00	-268.09	7	4
299	Motif group IL_04650.2 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L-R-L-L-cSH	0.00	-268.86	10	7
300	Motif group IL_06029.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L	0.00	-269.33	15	14	Kink-turn
301	Motif group IL_19048.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cSH-L-R-cWW-cWW	0.00	-270.83	10	8
302	Motif group IL_82107.4 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-276.10	5	4	Multiple bulged bases
303	Motif group IL_38186.6 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	0.00	-276.66	7	4
304	Motif group IL_42997.3 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-281.98	5	4	Isolated cWS basepair
305	Motif group IL_26685.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-282.40	6	4	Multiple bulged bases
306	Motif group IL_88072.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R-L	0.00	-283.77	10	6
307	Motif group IL_09990.4 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	0.00	-285.69	6	5
308	Motif group IL_61249.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW	0.00	-286.32	13	11
309	Motif group IL_44465.1 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-287.24	5	4	Isolated non-canonical cWW contact
310	Motif group IL_93889.1 View motif instance in 3D Basepair signature: cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L	0.00	-288.59	13	12
311	Motif group IL_66663.1 View motif instance in 3D Basepair signature: cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW	0.00	-289.07	11	10
312	Motif group IL_18354.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R	0.00	-292.10	9	7
313	Motif group IL_10167.6 View motif instance in 3D Basepair signature: cWW-cHW-cWW	0.00	-293.01	5	4	Isolated cWH basepair
314	Motif group IL_15218.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L	0.00	-293.20	10	8
315	Motif group IL_29357.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R	0.00	-295.99	13	12
316	Motif group IL_19516.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R	0.00	-296.18	14	12	Pseudoknot
317	Motif group IL_41203.4 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-cSH	0.00	-299.60	7	5	SSU/LSU pseudoknot
318	Motif group IL_67095.2 View motif instance in 3D Basepair signature: cWW-tWW-cWW	0.00	-299.77	6	4	Isolated tWW turn
319	Motif group IL_85599.2 View motif instance in 3D Basepair signature: cWW-tHS-cWW	0.00	-302.19	6	5	Isolated tHS basepair with bulges
320	Motif group IL_60448.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R	0.00	-306.20	14	12
321	Motif group IL_87907.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-306.83	5	4	Isolated non-canonical cWW pair
322	Motif group IL_45896.1 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-313.09	15	13
323	Motif group IL_20463.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R	0.00	-328.60	13	10	7x11 Sarcin-Ricin with pseudoknotted region; G-bulge
324	Motif group IL_76460.1 View motif instance in 3D Basepair signature: cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R	0.00	-332.21	15	14
325	Motif group IL_56455.6 View motif instance in 3D Basepair signature: cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW	0.00	-337.21	11	9	Bacterial 5S Loop E
326	Motif group IL_53787.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L-R	0.00	-339.15	12	10	Pseudoknot
327	Motif group IL_07171.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-339.77	8	5	Bulged stacked bases
328	Motif group IL_13394.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R	0.00	-339.90	16	15
329	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-340.90	6	4
330	Motif group IL_50715.3 View motif instance in 3D Basepair signature: cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L	0.00	-344.36	16	14
331	Motif group IL_30441.1 View motif instance in 3D Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R	0.00	-349.86	13	10
332	Motif group IL_29346.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-350.45	6	4	Left turn
333	Motif group IL_60797.1 View motif instance in 3D Basepair signature: cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW	0.00	-355.52	14	12
334	Motif group IL_94967.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-358.16	7	5
335	Motif group IL_96303.1 View motif instance in 3D Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-R	0.00	-358.47	13	10
336	Motif group IL_00881.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-358.72	6	4
337	Motif group IL_10796.1 View motif instance in 3D Basepair signature: cWW-L-R-cWW	0.00	-366.24	7	6
338	Motif group IL_73700.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-cWW-tHS-cWW	0.00	-368.71	11	9
339	Motif group IL_47074.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-370.39	5	5
340	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-371.56	5	4	Major groove intercalation
341	Motif group IL_20031.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-373.57	7	5
342	Motif group IL_28037.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW	0.00	-378.67	5	4	Isolated non-canonical cWW pair
343	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-379.89	6	4	Intercalated cWS
344	Motif group IL_42032.1 View motif instance in 3D Basepair signature: cWW-cSH-cWW-tWH-L-cWW-L-L	0.00	-387.16	7	4
345	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-389.61	6	5	Major groove platform
346	Motif group IL_15052.4 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-393.39	5	4	Minor groove platform
347	Motif group IL_15991.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L	0.00	-394.72	16	15
348	Motif group IL_95583.2 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-399.32	5	4	Minor groove platform, major groove intercalation
349	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-401.83	5	4
350	Motif group IL_79895.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-402.90	6	4
351	Motif group IL_73355.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-403.42	5	4
352	Motif group IL_42626.2 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-404.94	6	4
353	Motif group IL_68140.4 View motif instance in 3D Basepair signature: cWW-cSH-cWW	0.00	-405.22	5	3	Major groove minor groove platform; mini C-loop
354	Motif group IL_03350.1 View motif instance in 3D Basepair signature: cWW-tWH-cWW-L-L-cWW-L-L-L	0.00	-407.97	8	7	Reverse kink-turn related
355	Motif group IL_65653.1 View motif instance in 3D Basepair signature: cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L	0.00	-408.24	12	10
356	Motif group IL_76709.2 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-411.05	5	4
357	Motif group IL_56987.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-412.59	6	4
358	Motif group IL_82426.6 View motif instance in 3D Basepair signature: cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R	0.00	-413.43	10	8
359	Motif group IL_14368.1 View motif instance in 3D Basepair signature: cWW-L-cWW-cSH	0.00	-414.35	6	4	Major groove platform with intercalated tWH
360	Motif group IL_04332.3 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R-L	0.00	-417.73	13	12
361	Motif group IL_80298.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R	0.00	-419.62	18	17
362	Motif group IL_22551.4 View motif instance in 3D Basepair signature: cWW-L-cWW-L	0.00	-426.54	6	5
363	Motif group IL_48076.6 View motif instance in 3D Basepair signature: cWW-cSH-cWW	0.00	-436.36	5	4	Major groove platform
364	Motif group IL_34739.3 View motif instance in 3D Basepair signature: cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R	0.00	-443.13	19	17
365	Motif group IL_64048.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-tWH-R-L-R	0.00	-444.30	9	7
366	Motif group IL_51454.3 View motif instance in 3D Basepair signature: cWW-cSH-cWW	0.00	-456.32	5	5	Minor groove platform
367	Motif group IL_02555.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-457.35	6	4	Major groove platform with intercalation
368	Motif group IL_50694.7 View motif instance in 3D Basepair signature: cWW-tSH-cWW-L	0.00	-457.75	4	4	Major groove platform; stack outside cWW
369	Motif group IL_29826.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW	0.00	-468.57	20	19
370	Motif group IL_42218.2 View motif instance in 3D Basepair signature: cWW-L-R-cHW-cWW-L-L-L-R-L	0.00	-469.95	13	11
371	Motif group IL_79846.1 View motif instance in 3D Basepair signature: cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L	0.00	-470.55	13	12
372	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-477.15	6	4	Single stack bend
373	Motif group IL_83149.1 View motif instance in 3D Basepair signature: cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW	0.00	-483.89	22	20
374	Motif group IL_53581.1 View motif instance in 3D Basepair signature: cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW	0.00	-486.84	16	14	Kink-turn related
375	Motif group IL_64858.3 View motif instance in 3D Basepair signature: cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW	0.00	-487.41	18	17
376	Motif group IL_32056.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-tWH-R-L-R-L	0.00	-488.61	10	8
377	Motif group IL_58103.11 View motif instance in 3D Basepair signature: cWW-cSH-cWS-L-tSW-R-R-cWW	0.00	-492.94	7	5	Symmetric double minor groove platform
378	Motif group IL_96236.1 View motif instance in 3D Basepair signature: cWW-tWW-cWW-L-cWW	0.00	-523.70	7	5
379	Motif group IL_31504.1 View motif instance in 3D Basepair signature: cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L	0.00	-525.19	15	14
380	Motif group IL_58960.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-tWW-L-R-L	0.00	-528.82	8	6
381	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-530.14	6	5	Single stack bend
382	Motif group IL_31462.6 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-534.74	5	5	Single bulged A
383	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-542.35	7	5
384	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-547.98	5	5	Single bulged G
385	Motif group IL_89505.4 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-568.47	5	5	Single bulged U
386	Motif group IL_61258.15 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-605.64	6	6	Single bulged C
387	Motif group IL_00555.1 View motif instance in 3D Basepair signature: cWW-cWS-cWW-L-R	0.00	-844.44	9	7
388	Motif group IL_63596.11 View motif instance in 3D Basepair signature: cWW-cWS-cSH-tWH-cWW-L	0.00	-860.49	4	3	C-loop
389	Motif group IL_26222.2 View motif instance in 3D Basepair signature: cWW-cWS-cSH-tWH-R-L-R-cWW	0.00	-955.19	6	4	C-loop with bulged stacked A's
390	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-988.45	5	5	Multiple bulged bases
391	Motif group IL_83150.2 View motif instance in 3D Basepair signature: cWW-tHH-cWW-L-L	0.00	-1037.91	6	3
392	Motif group IL_10569.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-1178.44	6	5
393	Motif group IL_63775.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-1210.54	8	6
394	Motif group IL_49714.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	0.00	-1255.65	7	5	Major groove intercalation
395	Motif group IL_46174.3 View motif instance in 3D Basepair signature: cWW-cSS-tSS-tSH-L-cWW-tHW-cWW	0.00	-1341.66	7	6	Kink-turn with non-sequential stacking
396	Motif group IL_84409.1 View motif instance in 3D Basepair signature: cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L	0.00	-4465.96	17	16
397	Motif group IL_75283.2 View motif instance in 3D Basepair signature: cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R	0.00	-4664.45	15	12
398	Motif group IL_43140.1 View motif instance in 3D Basepair signature: cWW-L-cWW-cWH-L-L	0.00	-4780.20	10	8
399	Motif group IL_86012.1 View motif instance in 3D Basepair signature: cWW-tHS-tWH-cWH-cWW-L-L-cWW	0.00	-4872.90	9	8
400	Motif group IL_49971.1 View motif instance in 3D Basepair signature: cWW-cWH-cWW-cWW-L-L-R	0.00	-5219.39	8	6
401	Motif group IL_81516.2 View motif instance in 3D Basepair signature: cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L	0.00	-5243.66	14	13
402	Motif group IL_19852.1 View motif instance in 3D Basepair signature: cWW-tWH-cWW-cWH-cWH-cWH	0.00	-5260.81	13	12	Part of G-quadruplex
403	Motif group IL_17765.1 View motif instance in 3D Basepair signature: cWW-tWH-cHW-L-tSS-cSS-cWW-R-L	0.00	-5278.62	13	10
404	Motif group IL_44624.1 View motif instance in 3D Basepair signature: cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L	0.00	-5280.35	13	10
405	Motif group IL_22564.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	0.00	-6086.65	8	6
406	Motif group IL_24134.1 View motif instance in 3D Basepair signature: cWW-tSS-L-R-L-tHS-L-cWW-L-L	0.00	-6316.23	6	5	Kink-turn
407	Motif group IL_38394.1 View motif instance in 3D Basepair signature: cWW-tWH-cWW-L-L-R-L	0.00	-7237.41	10	9
408	Motif group IL_59877.1 View motif instance in 3D Basepair signature: cWW-L-cWW	0.00	-9619.67	5	4
409	Motif group IL_03109.3 View motif instance in 3D Basepair signature: cWW-cWS-tWH-cWW-L	0.00	-9646.91	5	4	C-loop
410	Motif group IL_20245.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L	0.00	-9999.00	19	16
411	Motif group IL_54737.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R	0.00	-9999.00	19	18