RNA 3D Hub

JAR3D Query RF03064-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 2 Internal loop

Column numbers: 14-55, 129-131 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    A-CAAGAACU-------------------------------U*A-U  194

    
    U-AUAUCAAA-------------------------------C*G-G   83

    
    U-AUAUCAAA-------------------------------U*A-G   71

    
    C-ACAGCAAA-------------------------------C*G-G   43

    
    C-AUAUCAAA-------------------------------C*G-G   37

    
    A-CAAGGAAC-------------------------------U*A-U   29

    
    U-AUACAAA--------------------------------C*G-G   29

    
    C-AUAUCAAA-------------------------------U*A-G   27

    
    U-ACAUCAAA-------------------------------C*G-G   26

    
    U-ACAGCAAA-------------------------------C*G-G   25

    
    U-AUAUAAA--------------------------------C*G-G   25

    
    U-AUACCAAA-------------------------------C*G-G   24

    
    A-CAAGAACC-------------------------------U*A-U   22

    
    A-CUAGAACU-------------------------------U*A-U   22

    
    U-AUACAAA--------------------------------C*G-A   20

    
    A-CAGGAACU-------------------------------U*A-U   19

    
    U-AUAGCAAA-------------------------------C*G-G   18

    
    C-AUACAAAA-------------------------------U*A-G   14

    
    U-AUAGCAAA-------------------------------U*A-G   14

    
    U-ACAUCAAA-------------------------------U*A-G   13

    
    C-AUACAAA--------------------------------C*G-G   11

    
    U-ACAUAAA--------------------------------C*G-G   11

    
    C-ACAUCAAA-------------------------------C*G-G   10

    
    C-ACAUCAAA-------------------------------U*A-G   10

    
    C-AUACCAAA-------------------------------C*G-G   10

    
    U-AUAUUAAA-------------------------------C*G-G   10

    
    C-AAACAAA--------------------------------C*G-G   10

    
    G-ACACCAAA-------------------------------C*G-C    9

    
    U-AUAUCAAA-------------------------------G*U-G    9

    
    A-CACGAACU-------------------------------U*A-U    8

    
    A-CUAGAACU-------------------------------U*G-U    8

    
    U-AUAACAAA-------------------------------U*A-G    8

    
    U-AUAUCAAA-------------------------------C*G-A    8

    
    A-CCAGAACU-------------------------------U*A-U    7

    
    C-ACACCAAA-------------------------------U*A-G    7

    
    U-ACACCAAA-------------------------------U*A-G    7

    
    U-AUACCAAA-------------------------------U*A-G    7

    
    C-AAAGAAA--------------------------------C*G-G    7

    
    C-AUAUCAA--------------------------------C*G-G    7

    
    A-AAAACAAA-------------------------------U*A-U    6

    
    A-CAAAAAAA-------------------------------U*A-U    6

    
    A-GAAGAACU-------------------------------U*A-U    6

    
    C-AUAAAAAA-------------------------------C*G-G    6

    
    C-AUAAAAAA-------------------------------U*A-G    6

    
    C-AUAACAAA-------------------------------U*A-G    6

    
    G-AUACCAAA-------------------------------C*G-C    6

    
    U-ACACAAA--------------------------------C*G-G    6

    
    A-AAAGAAAA-------------------------------U*A-U    5

    
    A-CAAAAACC-------------------------------U*A-U    5

    
    A-CAAAAACU-------------------------------U*A-U    5

    
    A-CAAGGACC-------------------------------U*A-U    5

    
    A-CAUGAACU-------------------------------U*A-U    5

    
    A-CUUGAACU-------------------------------U*A-U    5

    
    U-ACAAAAAA-------------------------------C*G-A    5

    
    U-ACACCAAA-------------------------------C*G-G    5

    
    C-ACACCAA--------------------------------C*G-G    5

    
    U-UAAUAAU--------------------------------C*G-G    5

    
    ACUUAGGAUC-------------------------------U*A-U    4

    
    A-UAAAAAAA-------------------------------U*A-U    4

    
    C-AUACCAAA-------------------------------U*A-G    4

    
    G-AUACGAAA-------------------------------C*G-C    4

    
    U-ACACCAAA-------------------------------C*G-A    4

    
    U-AUACCAAA-------------------------------C*G-A    4

    
    U-AUAUCAAA-------------------------------G*G-G    4

    
    A-CAAAAAA--------------------------------U*A-U    4

    
    C-AAGGAAA--------------------------------C*G-G    4

    
    C-ACACCAAC-------------------------------C*GGG    3

    
    A-CAAGAAUU-------------------------------U*A-U    3

    
    A-CAUGGACC-------------------------------U*A-U    3

    
    A-CUAGGACC-------------------------------U*A-U    3

    
    A-UACAAAGA-------------------------------U*A-U    3

    
    C-AUAGCAAA-------------------------------C*G-G    3

    
    C-CUAUCAAA-------------------------------C*G-G    3

    
    G-AUAUCAAA-------------------------------C*G-C    3

    
    U-AGAUCAAA-------------------------------C*G-G    3

    
    U-AUAGAAAA-------------------------------C*G-G    3

    
    U-AUGUCAAA-------------------------------C*G-G    3

    
    U-CUAUCAAA-------------------------------U*A-G    3

    
    C-ACUCAAA--------------------------------C*G-G    3

    
    C-AUAAAAA--------------------------------U*A-G    3

    
    C-AUACAAA--------------------------------U*A-G    3

    
    C-AUACCAA--------------------------------C*G-G    3

    
    U-AAGAAAA--------------------------------U*A-A    3

    
    U-AAGACAA--------------------------------U*A-A    3

    
    U-AUAAAAA--------------------------------C*G-A    3

    
    U-AUAUAAA--------------------------------C*G-A    3

    
    U-GUACAAA--------------------------------C*G-A    3

    
    A-CAUAGUUGUUCCAACAUUGGUUGUUCCAACAUUGGAACUU*A-U    2

    
    C-AUAUCAAAA------------------------------C*G-G    2

    
    UAUAAUCAAA-------------------------------C*G-A    2

    
    A-AAAACCAU-------------------------------U*A-U    2

    
    A-CAAGAAAC-------------------------------U*A-U    2

    
    A-CAAGAGCU-------------------------------U*A-U    2

    
    A-CAAGGAAU-------------------------------U*A-U    2

    
    A-CAAUAACU-------------------------------U*A-U    2

    
    A-CACAACAA-------------------------------U*A-U    2

    
    A-CAUGGAUC-------------------------------U*A-U    2

    
    A-CGAGAACU-------------------------------U*A-U    2

    
    A-CUAGAACA-------------------------------U*A-U    2

    
    A-UACAAAAU-------------------------------U*A-U    2

    
    C-AAAAAAAA-------------------------------C*G-G    2

    
    C-ACACCAAA-------------------------------C*G-G    2

    
    C-AUAACAAA-------------------------------C*G-G    2

    
    C-GUAUCAAA-------------------------------C*G-G    2

    
    G-ACACCAGA-------------------------------C*G-C    2

    
    G-ACACGAAA-------------------------------C*G-C    2

    
    G-AUACCAGA-------------------------------C*G-C    2

    
    U-AAACCAAA-------------------------------C*G-G    2

    
    U-AAAGCAAA-------------------------------C*G-G    2

    
    U-AAAUCAAA-------------------------------C*G-G    2

    
    U-AAGCCAAA-------------------------------C*G-G    2

    
    U-AGAACAAA-------------------------------C*G-G    2

    
    U-AUAACAAA-------------------------------C*G-G    2

    
    U-AUAGUAAA-------------------------------U*A-G    2

    
    U-AUAUAAAA-------------------------------C*G-G    2

    
    U-AUAUAAAA-------------------------------G*U-G    2

    
    U-AUAUCAAA-------------------------------C*A-G    2

    
    U-AUAUCAAA-------------------------------U*G-G    2

    
    U-CUACCAAA-------------------------------U*A-G    2

    
    U-GCACCAAA-------------------------------C*G-A    2

    
    U-GCAUCAAA-------------------------------C*G-G    2

    
    U-GUAAGAAA-------------------------------U*U-G    2

    
    U-GUAUCAAA-------------------------------C*G-A    2

    
    U-GUAUCAAA-------------------------------C*G-G    2

    
    A-AAACAAA--------------------------------U*A-U    2

    
    C-AAAAAAA--------------------------------C*G-G    2

    
    C-AAAACAA--------------------------------C*G-G    2

    
    C-AAUCAAA--------------------------------C*G-G    2

    
    C-ACACAAA--------------------------------C*G-G    2

    
    C-ACAUAAA--------------------------------C*G-G    2

    
    C-ACAUCAA--------------------------------C*G-G    2

    
    C-AUACAAG--------------------------------C*G-G    2

    
    C-AUAUAAA--------------------------------C*G-G    2

    
    C-GAAAAAA--------------------------------C*G-G    2

    
    C-GGACAAA--------------------------------C*G-G    2

    
    G-AAACCAG--------------------------------C*G-A    2

    
    G-AGACAAA--------------------------------C*G-C    2

    
    U-AAACAAA--------------------------------C*G-A    2

    
    U-AAGCAAA--------------------------------C*G-A    2

    
    U-ACACCAA--------------------------------C*G-A    2

    
    U-ACAUAAA--------------------------------C*G-A    2

    
    U-AUAAAAA--------------------------------C*G-G    2

    
    U-AUAAAAG--------------------------------C*G-A    2

    
    U-AUAUAAG--------------------------------C*G-G    2

    
    U-GCACAAA--------------------------------C*G-A    2

    
    A-CAAAAA---------------------------------U*A-U    2

    
    U-AGACCA---------------------------------C*G-A    2

    
    A-CAUAGUUGUUCCA-ACAU--------------UGGAACUU*A-U    1

    
    A-CAUUGUUGUUCCA----ACAU-----------UGGAACUU*A-U    1

    
    C-AAACAAAA--------------------GUA--------C*G-G    1

    
    U-AUAUCAUC------AA----------------------AC*G-G    1

    
    CAUACUCAAA------------------------------CC*G-G    1

    
    U-UUAUAUCA-------AA----------------------C*A-G    1

    
    U-UUAUAUCAAA-----------------------------C*A-G    1

    
    A-CUUAGGAU------------------------------CU*A-U    1

    
    A-CUUAGGAUC------------------------------U*A-U    1

    
    A-CUUUGGAUC------------------------------U*A-U    1

    
    A-UAAAAAAA------------------------------AU*A-U    1

    
    C-AUAAAAAA------------------------------AC*G-G    1

    
    C-AUAUCAAA-------------------------------C*GGG    1

    
    U-AUAAAAAAA------------------------------C*G-A    1

    
    U-AUAGAAAAA------------------------------C*G-G    1

    
    U-AUAGCAAA-------------------------------C*GGA    1

    
    U-AUAUACAAA------------------------------C*G-G    1

    
    U-AUAUCAAA------------------------------AC*G-G    1

    
    UUACAUCAAA-------------------------------C*G-G    1

    
    A-AAAACAAA-------------------------------G*A-U    1

    
    A-AAAGAACU-------------------------------U*A-U    1

    
    A-AGACCAAA-------------------------------C*G-A    1

    
    A-AGACCGAA-------------------------------C*G-A    1

    
    A-AUAACAAA-------------------------------U*A-G    1

    
    A-AUAGAACU-------------------------------U*A-U    1

    
    A-CAAAAAAC-------------------------------U*A-U    1

    
    A-CAAAACAA-------------------------------U*A-U    1

    
    A-CAACAAAU-------------------------------U*A-U    1

    
    A-CAAGAACC-------------------------------A*A-U    1

    
    A-CAAGAUCU-------------------------------U*A-U    1

    
    A-CAAGUACU-------------------------------U*A-U    1

    
    A-CAAUAAAC-------------------------------U*A-U    1

    
    A-CACAAACC-------------------------------U*A-U    1

    
    A-CAGGAACC-------------------------------U*A-U    1

    
    A-CAGGGACC-------------------------------U*A-U    1

    
    A-CAUAACAA-------------------------------U*A-U    1

    
    A-CAUAAUAA-------------------------------U*A-U    1

    
    A-CAUGAACC-------------------------------U*A-U    1

    
    A-CAUGAAUC-------------------------------U*A-U    1

    
    A-CGUGAACU-------------------------------U*A-U    1

    
    A-CUAGAAAU-------------------------------U*A-U    1

    
    A-CUCGAACU-------------------------------U*A-U    1

    
    A-CUGGAACU-------------------------------U*A-U    1

    
    A-CUUGAACA-------------------------------U*A-U    1

    
    A-CUUGAACU-------------------------------U*G-U    1

    
    A-GAAGAACU-------------------------------U*G-U    1

    
    A-GAUGAACU-------------------------------U*A-U    1

    
    A-UAAGAACU-------------------------------U*A-U    1

    
    A-UAAGAAUU-------------------------------U*A-U    1

    
    A-UAAGGAAC-------------------------------U*A-U    1

    
    A-UACAACAA-------------------------------U*A-U    1

    
    A-UACAACGA-------------------------------U*A-U    1

    
    A-UAGGAAAA-------------------------------U*A-U    1

    
    A-UAUAAAGA-------------------------------U*A-U    1

    
    A-UAUAACAA-------------------------------U*A-U    1

    
    A-UUAGAACU-------------------------------U*G-U    1

    
    C-AAACAAAA-------------------------------A*G-G    1

    
    C-ACACAAAA-------------------------------C*G-G    1

    
    C-ACAUCAAA-------------------------------C*A-G    1

    
    C-AUAUCAAA-------------------------------U*A-C    1

    
    C-AUAUCAAA-------------------------------U*G-G    1

    
    C-AUAUCCAA-------------------------------U*A-G    1

    
    C-AUAUUAAA-------------------------------U*A-G    1

    
    C-AUGCAAAA-------------------------------U*A-G    1

    
    C-AUGCCAAA-------------------------------U*A-G    1

    
    C-GAAAAAAA-------------------------------C*G-G    1

    
    C-GCAUCAAA-------------------------------C*G-G    1

    
    C-GGACCAAA-------------------------------C*G-G    1

    
    C-GUAACAAA-------------------------------C*G-G    1

    
    G-ACGCCAAA-------------------------------C*G-C    1

    
    G-AUACAAAA-------------------------------C*G-C    1

    
    G-UGACCAAG-------------------------------C*G-G    1

    
    U-AAAACAAA-------------------------------C*G-G    1

    
    U-AAAUCAAA-------------------------------A*U-G    1

    
    U-AAUAUAAA-------------------------------C*G-A    1

    
    U-ACAACAAA-------------------------------C*G-G    1

    
    U-ACACAAAA-------------------------------U*A-G    1

    
    U-ACAGCAAA-------------------------------U*A-G    1

    
    U-ACAGUAAA-------------------------------C*G-G    1

    
    U-ACAUAAAA-------------------------------C*G-G    1

    
    U-ACAUCAAA-------------------------------C*G-A    1

    
    U-ACAUUAAA-------------------------------C*G-A    1

    
    U-ACCCCAAA-------------------------------C*G-G    1

    
    U-ACGCCAAA-------------------------------C*G-A    1

    
    U-AGAGCAAA-------------------------------C*G-G    1

    
    U-AGAUCAAA-------------------------------U*A-G    1

    
    U-AUAACAAA-------------------------------C*G-A    1

    
    U-AUAAGAAA-------------------------------C*G-G    1

    
    U-AUAAGAAA-------------------------------G*U-G    1

    
    U-AUAAGAAA-------------------------------U*U-G    1

    
    U-AUAAUAAA-------------------------------U*A-G    1

    
    U-AUACAAAA-------------------------------U*A-G    1

    
    U-AUACCAAA-------------------------------G*G-G    1

    
    U-AUACCAAA-------------------------------G*U-G    1

    
    U-AUACCAAA-------------------------------U*A-A    1

    
    U-AUACUAAA-------------------------------U*A-A    1

    
    U-AUAGCGAA-------------------------------U*A-G    1

    
    U-AUAUAAAG-------------------------------C*G-A    1

    
    U-AUAUCAAA-------------------------------C*G-C    1

    
    U-AUAUCAAA-------------------------------U*U-G    1

    
    U-AUAUCACA-------------------------------U*A-G    1

    
    U-AUAUUAAA-------------------------------C*G-A    1

    
    U-AUAUUAAA-------------------------------U*A-G    1

    
    U-AUGACAAA-------------------------------C*G-G    1

    
    U-AUGACAAA-------------------------------U*A-G    1

    
    U-AUGCCAAA-------------------------------C*G-A    1

    
    U-AUGCCAAA-------------------------------U*A-G    1

    
    U-AUGGCAAA-------------------------------C*G-G    1

    
    U-AUUUGACC-------------------------------C*G-A    1

    
    U-CUAUCAAA-------------------------------C*G-A    1

    
    U-GCAUCAAA-------------------------------U*A-G    1

    
    U-GUAUCAAA-------------------------------G*G-G    1

    
    U-GUAUCAUA-------------------------------C*A-G    1

    
    U-UAUACAAA-------------------------------C*G-A    1

    
    A-AAAAGAA--------------------------------U*A-U    1

    
    A-AGUUUAU--------------------------------U*G-U    1

    
    A-CAAAACA--------------------------------U*A-U    1

    
    A-CAAAACU--------------------------------U*A-U    1

    
    A-CAAGCAA--------------------------------U*A-U    1

    
    A-GAAGACC--------------------------------U*A-U    1

    
    A-UAAAAAA--------------------------------U*A-U    1

    
    A-UAAAAAU--------------------------------U*A-U    1

    
    C-AAACAAA--------------------------------A*G-G    1

    
    C-AAACAAA--------------------------------C*A-G    1

    
    C-AAACAAG--------------------------------U*A-G    1

    
    C-AAACAGA--------------------------------U*A-G    1

    
    C-AAAGCAA--------------------------------C*G-G    1

    
    C-AAAUAAA--------------------------------C*G-G    1

    
    C-AACCAAA--------------------------------C*G-G    1

    
    C-AACGAAA--------------------------------C*G-G    1

    
    C-AAGACCA--------------------------------C*G-G    1

    
    C-ACACAAA--------------------------------U*A-G    1

    
    C-ACAUCCA--------------------------------C*G-G    1

    
    C-ACCCCAA--------------------------------C*G-G    1

    
    C-ACGCAAA--------------------------------C*G-G    1

    
    C-AGACAAA--------------------------------C*G-G    1

    
    C-AUAAAAA--------------------------------C*G-G    1

    
    C-AUACCAA--------------------------------U*G-G    1

    
    C-AUACGGA--------------------------------C*G-G    1

    
    C-GCAUCCA--------------------------------C*G-G    1

    
    C-GGACAAG--------------------------------C*G-G    1

    
    C-GUACUAA--------------------------------C*A-G    1

    
    U-AAAACAA--------------------------------U*A-A    1

    
    U-AAAACCA--------------------------------C*G-A    1

    
    U-AAAAUCA--------------------------------C*G-A    1

    
    U-AAACAAA--------------------------------C*G-G    1

    
    U-AAACAAA--------------------------------U*A-A    1

    
    U-AAACAAA--------------------------------U*A-G    1

    
    U-AAAUAAA--------------------------------C*G-G    1

    
    U-AAGAAAA--------------------------------C*G-A    1

    
    U-AAGAACC--------------------------------C*G-A    1

    
    U-AAGACAA--------------------------------U*A-G    1

    
    U-AAGACCA--------------------------------C*G-A    1

    
    U-ACAAAAA--------------------------------C*G-A    1

    
    U-ACAACCA--------------------------------C*G-A    1

    
    U-ACACAAA--------------------------------U*G-G    1

    
    U-ACAGAAA--------------------------------C*G-A    1

    
    U-ACAUCAA--------------------------------C*G-G    1

    
    U-ACGAAAA--------------------------------C*G-A    1

    
    U-AUACAAA--------------------------------U*G-A    1

    
    U-AUACAAG--------------------------------C*G-G    1

    
    U-AUAUAAA--------------------------------C*U-A    1

    
    U-AUAUCAA--------------------------------C*G-G    1

    
    U-AUAUCAA--------------------------------U*A-G    1

    
    U-AUCUAAA--------------------------------C*G-G    1

    
    U-AUGAAAC--------------------------------C*G-A    1

    
    U-GUAAAAA--------------------------------C*G-A    1

    
    U-GUAACCA--------------------------------C*G-A    1

    
    U-GUACAAA--------------------------------U*A-G    1

    
    U-GUAUAAA--------------------------------C*G-G    1

    
    U-GUGCAAA--------------------------------C*G-A    1

    
    C-AAA--AAA-------------------------------U*A-G    1

    
    C-AAAAAA---------------------------------C*G-G    1

    
    C-AUA--AAA-------------------------------U*A-G    1

    
    C-AUAAAA---------------------------------U*A-G    1

    
    G-AUGAGC---------------------------------C*G-C    1

    
    U-AAA--AAA-------------------------------C*G-A    1

    
    U-AACCAA---------------------------------C*G-A    1

    
    U-AUACA--A-------------------------------C*G-A    1

    
    U-GAACGA---------------------------------C*G-A    1

    
    A-AAU---A-------------------------------GC*G-U    1

    
    U-----UAA-------------------------------UC*G-G    1

    
    Omitted sequenced and counts

    
    A-CACGAACU-------------------------------U*A-N    1

    
    C-ANACAAU--------------------------------C*G-G    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

41.89 -21.28 6 3

2

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

8.32 -57.12 6 4

Minor groove platform

3

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

5.43 -59.17 8 5

4

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

3.39 -63.11 7 4

5

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

3.39 -74.94 7 5

6

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

1.48 -66.73 8 5

7

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.71 -111.94 6 5

8

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.63 -73.74 8 5

9

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.63 -75.08 8 6

10

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.56 -82.94 8 5

11

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.42 -173.76 7 4

Major groove intercalation

12

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.35 -72.76 9 5

13

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.35 -77.40 8 5

14

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.28 -149.31 6 4

SSU/LSU pseudoknot

15

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.21 -73.76 9 5

16

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.21 -130.94 6 3

17

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.07 -102.48 8 4

18

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.07 -155.74 7 5

cWH basepair with bulged bases

19

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.07 -158.43 8 5

20

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.07 -177.56 9 6

Major groove intercalation

21

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.07 -236.41 8 6

22

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.07 -255.63 8 7

23

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -62.33 8 6

24

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -62.73 8 6

25

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -64.20 8 6

26

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -82.73 8 5

27

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -84.88 10 7

28

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -96.04 8 6

29

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -106.96 8 6

Pseudoknot

30

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -128.83 8 7

31

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -131.19 9 7

32

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -133.79 10 8

33

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -134.96 9 6

34

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -142.70 6 5

35

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -143.15 10 8

Reverse kink-turn related

36

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -144.95 11 8

Part of G-quadruplex

37

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -157.13 10 8

38

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -160.06 7 6

39

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -167.41 11 9

40

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -172.40 11 9

41

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -174.89 12 10

Kink-turn related

42

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -174.96 7 4

43

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -175.56 10 9

44

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -175.87 7 5

Vitamin B12 Aptamer

45

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -175.95 7 5

46

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -176.58 12 8

47

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -177.07 10 8

48

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -178.62 10 7

49

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -178.87 10 8

50

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -181.09 10 7

51

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -186.40 8 6

Kink-turn related

52

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -189.07 12 11

53

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -189.14 7 4

54

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -190.02 9 7

55

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -191.84 7 4

56

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -196.54 10 7

57

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -201.08 13 9

58

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -203.20 11 9

59

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -209.79 10 8

60

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -210.24 10 7

61

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -211.24 9 7

Reverse turn

62

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -213.69 10 8

63

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -215.34 8 5

64

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -216.71 7 6

65

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -216.73 15 13

66

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -217.37 10 7

67

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -219.01 14 12

68

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -220.75 7 4

69

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -228.61 11 9

70

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -229.84 8 5

71

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -229.96 9 6

72

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -230.10 13 12

Pseudoknot

73

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -232.15 11 10

74

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -232.68 14 12

Kink-turn

75

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -237.78 8 6

76

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -238.75 9 7

77

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -239.93 9 7

78

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -242.31 11 10

79

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -245.65 13 11

80

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -254.60 11 8

81

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -258.89 13 11

Pseudoknot

82

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -261.81 8.5 6

83

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -263.28 7 6

84

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -268.58 8 7

85

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -268.67 7 5

86

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -268.85 7 5

87

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -274.18 11 8

88

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -275.20 11 9

89

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -276.50 9 7

Pseudoknot

90

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -278.10 10 10

91

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -278.49 10 8

92

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -283.84 11 8

93

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -287.44 15 13

94

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -287.85 8 7

tSH-tHW

95

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -293.37 11 9

96

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -296.35 11 9

97

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -296.44 15 14

98

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -299.19 8 8

99

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -299.29 8 7

100

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -299.53 9 7

Kink-turn

101

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -299.74 9 7

Intercalated tWH

102

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -299.90 8 6

103

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -301.86 16 15

104

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -301.87 10 7

105

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -303.43 10 8

106

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -303.74 13 11

107

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -303.88 13 11

108

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -305.77 8 7

180 degree turn

109

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -305.83 11 9

110

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -307.33 6 5

Reverse kink-turn

111

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -308.69 7 5

112

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -309.50 12 10

113

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -313.97 12 10

114

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -316.42 16 14

115

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -318.01 10 9

116

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -318.42 9 7

117

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -319.45 14 12

118

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -319.52 9 7

119

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -319.92 9 7

120

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -321.45 11 10

121

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -324.39 9 7

122

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -325.39 13 13

123

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -325.45 10 7

124

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -326.51 9 8

125

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -331.00 11 10

126

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -334.07 9 7

Kink-turn

127

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -334.28 10 7

128

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -334.51 8 7

129

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -337.30 9 8

130

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -338.89 9 7

tSH-tHS-tHW

131

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -339.90 9 8

UAA/GAN related

132

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -341.53 8 6

133

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -341.73 18 16

134

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -344.10 10 7

135

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -345.14 10 10

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

136

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -345.33 11 9

137

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -351.49 8 6

138

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -353.31 10 9

139

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -354.82 15 13

140

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -355.55 10 9

141

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -356.23 9 8

142

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -358.92 8 6

Multiple bulged bases

143

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -360.38 9 8

8x6 Sarcin-Ricin with inserted A; G-bulge

144

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -363.00 17 16

145

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -363.06 11 8

146

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -364.01 8 5

147

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -364.26 11 9

148

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -364.32 12 10

149

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -365.37 8 7

tHW-tHW cross-strand stack

150

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -366.77 17 15

151

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -372.24 9 7

152

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -378.22 12 8

153

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -379.41 11 10

154

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -379.47 7 6

Isolated non-canonical cWW pair

155

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -379.85 10 9

156

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -380.75 10 8

Sarcin-Ricin target in LSU H95; G-bulge

157

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -383.71 8 6

158

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -384.78 10 8

Kink-turn with embedded cWW pair

159

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -386.72 9 7

160

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -392.01 12 10

Minor groove platform related

161

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -393.28 20 18

162

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -394.90 15 14

163

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -400.81 8 6

Major groove minor groove platform with intercalation; mini C-loop

164

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -406.23 10 9

165

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -406.87 14 13

166

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -406.99 9 7

167

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -410.70 10 9

168

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -413.88 8 6

Kink-turn from U4

169

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -416.23 8 6

Kink-turn

170

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -418.96 11 9

171

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -421.14 10 8

172

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -423.48 8 7

173

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -424.99 9 6

Bulged stacked bases

174

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -427.55 11 8

175

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -427.82 9 6

Left turn

176

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -428.49 13 11

177

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -430.61 7 5

178

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -431.98 9 8

Kink-turn

179

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -432.38 11 10

10x8 Sarcin-Ricin; G-bulge

180

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -433.94 10 9

181

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -439.15 7 6

182

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -451.95 9 7

Decoding loop related

183

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -452.12 13 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

184

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -453.19 11 8

185

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -453.93 9 8

Kink-turn related

186

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -455.29 9 8

187

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -456.09 8 5

188

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -456.53 8 7

189

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -458.66 11 9

190

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -459.37 9 8

191

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -459.78 8 6

192

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -462.21 8 6

193

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -464.20 21 19

194

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -464.46 10 7

195

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -469.75 9 8

196

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -470.39 9 7

197

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -471.34 21 20

198

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -473.85 10 9

199

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -475.54 12 10

200

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -481.75 9 7

tSH-tHW

201

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -481.97 10 8

202

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -488.43 9 8

UAA/GAN with extra stack

203

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -492.73 10 9

204

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -496.76 8 6

205

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -508.19 9 7

206

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -509.65 12 9

207

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -509.87 12 11

208

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -509.89 12 9

8x6 Sarcin-Ricin with inserted Y; G-bulge

209

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -524.07 7 6

Major groove intercalation

210

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -524.90 13 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

211

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -527.81 8 5

Major groove platform with intercalated tWH

212

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -528.49 14 13

213

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -529.91 11 10

tSH-tHW-tHH-tHS

214

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -531.47 9 8

AAA cross-strand stack

215

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -533.16 10 9

7x7 Sarcin-Ricin with intercalated A; G-bulge

216

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -535.35 10 7

217

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -539.20 9 7

Other IL

218

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -545.86 8 6

219

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -547.46 13 12

220

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -549.71 7 6

221

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -559.99 11 8

222

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -566.73 13 12

223

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -566.99 8 6

224

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -575.06 11 9

225

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -576.05 8 7

226

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -576.15 12 10

227

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -576.42 9 7

228

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -591.02 10 9

Kink-turn

229

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -594.09 9 7

230

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -595.15 9 6

Kink-turn

231

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -595.33 10 7

232

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -597.13 7 6

233

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -605.17 15 14

234

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -605.94 7 6

235

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -607.01 8 7

236

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -608.43 8 6

237

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -610.77 8 7

238

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -612.71 8 7

Multiple bulged bases

239

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -620.39 7 6

240

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -629.40 8 5

241

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -658.64 8 6

242

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -665.71 9 7

243

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -668.27 8 7

244

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -672.78 9 8

245

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -679.96 7 6

246

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -684.53 7 7

Decoding loop related

247

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -708.81 7 7

248

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -713.94 17 15

Kink-turn related

249

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -715.67 8 7

250

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -721.17 9 7

251

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -721.27 7 5

Major groove minor groove platform; mini C-loop

252

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -725.72 7 5

253

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -725.94 6 5

Minor groove platform, major groove intercalation

254

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -728.43 9 8

UAA/GAN

255

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -732.22 7 5

Minor groove platform

256

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -743.81 19 18

257

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -765.42 7 6

Major groove platform

258

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -767.97 8 5

259

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -779.26 8 6

260

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -796.41 7 6

Minor groove platform

261

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -885.82 9 7

262

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -969.98 10 8

Minor groove platform

263

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -3565.98 15 13

264

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -4137.88 8 7

Reverse kink-turn related

265

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -4185.86 12 10

266

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -4203.67 11 9

267

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -4237.65 12 11

268

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -4267.30 11 9

269

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -4269.68 10 9

270

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -4287.74 10 9

Triple sheared with non-canonical cWW

271

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -4291.04 12 9

8x6 Sarcin-Ricin with bulged A; G-bulge

272

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -4329.25 10 9

8x7 Sarcin-Ricin; G-bulge

273

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4439.56 20 18

274

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4441.81 21 21

275

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -4442.50 12 9

Part of G-quadruplex

276

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -4461.90 11 8

277

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -4485.02 14 13

278

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -4524.30 10 8

Kink-turn related

279

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4554.64 19 18

280

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -4651.58 11 9

281

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -4705.43 10 8

Kink-turn related

282

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -4722.80 8 7

283

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -4730.40 8 8

Triple sheared related

284

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -4777.21 10 8

Double sheared; A in syn; two near cWW pairs

285

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4815.53 20 18

286

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -4860.57 9 8

6x5 Sarcin-Ricin; G-bulge

287

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -5043.37 11 10

8x7 Sarcin-Ricin; G-bulge

288

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5100.59 14 13

289

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5153.61 13 12

Bacterial 5S Loop E

290

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -5181.48 12 10

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

291

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -5187.49 10 9

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

292

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5196.26 11 9

tWH-tWH-tHW-tHW

293

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5231.61 9 8

294

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -5241.17 12 10

295

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -5263.41 9 8

Kink-turn

296

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -5264.86 11 10

297

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5275.88 11 9

298

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -5279.15 12 11

299

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5282.19 12 10

Other IL

300

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5289.42 11 11

Kink-turn related

301

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5298.58 8 7

302

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5304.48 9 7

303

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -5318.69 13 12

304

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -5328.73 10 8

Kink-turn

305

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -5336.63 9 8

UAA/GAN with extra cWW

306

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5339.59 11 10

Kink-turn with non-sequential stacking

307

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5350.23 11 10

308

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -5367.16 10 8

Kink-turn

309

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5399.82 18 18

310

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -5504.96 10 8

tSH-tSH-tHH-tHS

311

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5576.57 9 8

7x6 Sarcin-Ricin; G-bulge

312

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -5585.75 9 8

Kink-turn

313

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -5591.44 12 10

314

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -5657.82 8 7

Kink-turn

315

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5689.14 11 10

316

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5789.05 9 6

317

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5796.15 9 9

318

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -5837.92 9 7

319

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -5860.82 9 6

320

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5899.29 9 8

tSH-tWH-tHS-cWW

321

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -5928.26 11 8

UAA/GAN with tHH

322

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -6073.95 8 6

323

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6208.22 10 9

tSH-tHW-tWH-tHS

324

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6235.18 10 8

325

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6307.26 11 9

326

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6334.43 9 7

Receptor of 11-nt loop-receptor motif

327

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -6446.91 10 8

328

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -6448.59 11 9

Receptor of 11-nt loop-receptor motif

329

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -6515.21 9 8

330

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -6530.30 10 7

331

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -6550.17 10 9

332

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -6617.76 10 7

333

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -6634.92 8 6

334

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -6699.09 9 8

335

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -6767.59 8 8

UAA/GAN

336

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -6787.93 10 8

337

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -6820.77 11 8

tSH-tHH-tHS

338

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6980.04 15 12

Kink-turn

339

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -7005.71 10 9

Quadruple sheared

340

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7034.01 9 7

C-loop with bulged stacked A's

341

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7138.23 10 9

Symmetric double minor groove platform

342

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7225.95 9 7

343

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7295.35 10 7

8-nt loop receptor

344

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -7801.87 9 7

345

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7819.98 11 9

Triple sheared

346

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -7870.15 10 8

cWH basepair and non-canonical AC

347

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -7892.80 8 5

348

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -8079.47 9 7

Tandem non-canonical cWW pairs

349

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8234.73 8 7

Major groove platform

350

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -8264.57 9 7

351

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8369.98 10 8

352

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -8517.20 8 7

UAA/GAN related

353

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -8590.01 8 7

Double sheared

354

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -8596.81 9 6

Intercalated cWS

355

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -8605.97 9 8

Double sheared with non-canonical cWW

356

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -8629.63 8 6

357

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -8635.62 7 6

Single stack bend

358

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -8642.93 8 6

359

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -8669.72 8 6

Major groove platform with intercalation

360

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8686.26 9 7

361

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8698.01 7 6

C-loop

362

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -8711.50 8 7

363

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -8724.66 10 9

5x5 Sarcin-Ricin with intercalated A; G-bulge

364

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -8728.11 9 7

Isolated non-canonical cWW contact

365

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8760.24 10 8

Other IL

366

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8775.81 10 9

367

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8786.81 9 8

tSH-tWH-tHS

368

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8800.10 10 8

369

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -8811.46 8 7

UAA/GAN variation

370

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -9333.23 9 8

Triple non-canonical cWW pairs

371

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -9343.43 8 7

tSH-tHW

372

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -9452.77 9 8

373

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9461.08 7 6

374

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9486.15 8 8

Triple sheared

375

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -9707.44 9 7

376

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9965.76 9 8

Tandem non-canonical cWW pairs

377

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 7

Single bulged G

378

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 6 5

C-loop

379

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 8 6

Isolated non-canonical cWW pair

380

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9999.00 8 7

Double sheared

381

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 8 7

Isolated cWH basepair

382

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 7

383

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 10 8

384

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 8 7

Isolated non-canonical cWW pair

385

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 7

386

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -9999.00 10 8

387

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 7

Single stack bend

388

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 8 8

Isolated non-canonical cWW pair

389

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 7

Single bulged A

390

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 7

Stack and bulge

391

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 8 6

392

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 7 5

393

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 8 7

Multiple bulged bases

394

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 8 7

Isolated cWS basepair

395

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 7 5

Minor groove platform

396

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 7 6

Major groove platform; stack outside cWW

397

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 8 7

Isolated non-canonical cWW pair

398

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 8 7

399

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 6

400

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 7

Single bulged C

401

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 7

402

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 9 7

Isolated tWW turn

403

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 7 6

Multiple bulged bases

404

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 9 6

405

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 8 7

406

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 8 6

Multiple bulged bases

407

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 9 7

Tandem non-canonical cWW pairs

408

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 9 8

Isolated tHS basepair with bulges

409

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 8 7

Isolated non-canonical cWW pair

410

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 7

Single bulged U

411

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 10 8

Coloring options: