JAR3D
Query RF03064-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 3 Internal loop
Column numbers: 57-64, 121-127 - View nucleotides in PDB file(s)
Scored sequences and counts
AAAGU-AG*C-AAAAU 182
UGAGU-AG*C-AAAAG 132
UGAGU-AG*C-CAAAG 92
AGAGU-AG*C-AAAAU 83
GUAGU-AG*C-AAGGC 47
CGAGU-AG*C-AAAAG 44
GUAGU-AG*C-GAGGC 44
UGAGU-AG*C-GAAAG 36
UGAGU-AG*U-GAAAG 36
AAAGU-AG*C-GAAAU 31
UGAGU-AG*C-AAAAA 31
CAAGU-AG*C-AAAAG 29
UGAGU-AG*U-GAAAA 29
AUAGU-AG*U-GAGGU 25
GAAGU-AG*C-AAAAC 25
GUAGU-AG*C-GAGAC 24
GGAGU-AG*C-AAAAC 23
AGAGU-AG*C-GAAAU 20
AAAGU-AG*C-CAAAU 15
AGAGU-AG*C-CAAAU 15
AGAGU-AG*U-GAAAU 15
UUAGU-AG*C-GAGAA 15
AAAGU-AG*U-AAAAU 14
AAAGU-AG*U-GAAAU 14
UUAGU-AG*C-GAGGA 12
AUAGU-AG*C-GAGGU 11
CUAGU-AG*C-GAGAG 11
UGAGU-AG*C-GAAAA 11
UAAGU-AG*C-GAAAG 9
CAAGU-AG*C-GAAAG 8
GGAGU-AG*C-GAAAC 8
UAAGU-AG*C-AAAAG 8
UUAGU-AG*C-AAAAG 8
AAAGU-AA*U-GAAAU 7
CGAGU-AG*C-CAAAG 7
GGAGU-AG*C-CAAAC 7
UGAUU-AG*C-GAAAG 7
CAAGU-AG*U-GAAAG 6
GUAUU-AG*C-GAGGC 6
UGAGU-AG*U-CAAAA 6
AAAGU-AG*CAAAAAU 5
AGAGU-AA*U-GAAAU 5
AGAUU-AG*U-GAAAU 5
AGAGU-AG*U-AAAAU 4
AUAGU-AG*C-AAGGU 4
AUAGU-AG*C-GAGAU 4
CAAGU-AG*C-GAACG 4
CGAGU-AG*C-GAAAG 4
CUAGU-AG*C-GAAAG 4
GCGGU-AG*C-GAAAC 4
GUAGU-AG*C-AAAAC 4
GUAGU-AG*C-AAACC 4
UGAGU-AG*C-CAAAA 4
CAAGU-AG*C-AAAAA 3
CAAGU-AG*C-CAAAG 3
CCAGU-AG*C-CAAAA 3
GAAGU-AG*C-CAAAC 3
GAAGU-AG*C-GAAAC 3
GUAGU-AG*C-AAGAC 3
UAAGU-AG*C-AAAAA 3
UAAGU-AG*C-GAAAA 3
UAAGU-AG*U-GAAAG 3
UCGGU-AG*C-AAAGA 3
UGAGU-AC*U-GAAAG 3
UGAGU-AG*U-AAAAG 3
UGAGU-AG*U-CAAAG 3
UUAGU-AG*C-AAAAA 3
UUAGU-AG*C-AAGAA 3
CGAGU-AG*CAAAAAG 2
AAAGU-AG*C-UAAAU 2
AAAUU-AG*C-AAAAU 2
AGAAU-AG*C-AAAAU 2
CCAGU-AG*C-GAGAG 2
CGAGU-AG*U-CAAAG 2
CUAGU-AG*U-CAAAG 2
GAAGU-AG*C-GAAAA 2
GCGGU-AG*C-AAAAC 2
GUAGU-AG*C-AAAGC 2
GUAGU-AG*C-GAAAC 2
GUAGU-AG*U-GAGAC 2
GUUGU-AG*C-GAAGC 2
UAAGU-AG*C-CAAAA 2
UAAUU-AG*C-GAAAG 2
UAAUU-AG*U-GAAAG 2
UCAGU-AG*C-GAGGA 2
UGAAU-AG*U-GAAAG 2
UGAGU-AA*U-GAAAA 2
UGAGU-AA*U-GAAAG 2
UGUGU-AG*C-CAAAG 2
UUACU-AG*C-GAGGA 2
UUAGU-AG*C-AAGGA 2
UUAGU-AG*C-CAAAG 2
UUAGU-AG*C-GAAAG 2
UUAGU-AG*U-GAGAA 2
UUAUU-AG*C-GAGGA 2
AAAGU-AG*CAAAAUA 1
AAAGU-AG*UGAAAAU 1
AAAGUUAG*C-AAAAU 1
CAAGU-AG*CAAAAAG 1
CAAGU-AG*UAGAACG 1
CGAGU-AG*CAAAAGG 1
CUAGUUAG*C-GAAAG 1
UAAGU-AG*CGAAAAA 1
UGAGU-AG*CAAAAAA 1
UGAGU-AG*UGAAAAA 1
UGAGU-AG*UUGAAAA 1
UGAGUUAG*C-AAAAG 1
AAAAU-AG*C-GAAAU 1
AAAAU-AG*U-AAAAU 1
AAAAU-AG*U-GAAAU 1
AAAGU-AA*U-AAAAU 1
AAAGU-AG*C-AAAAC 1
AAAGU-AG*C-AAACU 1
AAAGU-AG*C-AAGAU 1
AAAGU-AG*U-CAAAU 1
AAAGU-AG*U-GAACU 1
AAAUU-AG*U-GAAAU 1
AGAAU-AG*C-CAAAU 1
AGAAU-AG*U-GAAAU 1
AGAGC-AG*U-GAAAU 1
AGAGU-AA*C-AAAAU 1
AGAGU-AC*G-GAAAU 1
AGAGU-AG*C-AAAAC 1
AGAGU-AG*C-CGAAU 1
AGAUU-AG*C-GAAAU 1
AUAGU-AA*U-GAACU 1
AUAGU-AG*C-AAAGC 1
AUAGU-AG*C-GAGAG 1
AUAGU-AG*C-UAGAU 1
AUAGU-AG*U-AAGGU 1
AUAGU-AG*U-GAAAU 1
AUAGU-AG*U-GAAGU 1
AUAUU-AG*C-GAGGU 1
AUGGU-AG*C-AAAAU 1
AUGGU-AG*C-GAAGU 1
CAAGU-AC*G-GAAAA 1
CAAGU-AC*G-GAAAG 1
CAAGU-AG*A-AAAGU 1
CAAGU-AG*C-AAACG 1
CAAGU-AG*U-AAAAG 1
CAAGU-AG*U-CAAAG 1
CAAUU-AG*C-GAAAG 1
CCAGU-AG*U-GAGAG 1
CCGGU-AC*G-GAAAG 1
CCGGU-AG*C-GAAAG 1
CGAGU-AG*C-AAAAA 1
CGAGU-AG*C-GAAAA 1
CGAGU-AG*U-GAAAG 1
CUAGU-AG*C-AAACG 1
CUAGU-AG*C-CAACG 1
CUAGU-AG*C-GAACG 1
CUAGU-AG*U-GAGAG 1
CUAGU-AG*U-GAGGG 1
CUAUU-AG*C-GAGAG 1
GAAGU-AG*C-GAGAC 1
GAAGU-AG*U-AAAAC 1
GGAAU-AG*C-AAAAC 1
GGAGU-AA*U-AAAAC 1
GGAGU-AG*C-AAAAU 1
GGAGU-AG*C-UAAAC 1
GGAGU-AG*U-AAAAC 1
GGAGU-AG*U-AAAAU 1
GGAGU-AG*U-GAAAC 1
GUAAU-AG*U-GAAAC 1
GUAGU-AG*C-AAAGU 1
GUAGU-AG*C-AAGGA 1
GUAGU-AG*C-GAAAA 1
GUAGU-AG*C-GAGGG 1
GUAGU-GG*C-GAGGC 1
GUGGU-AG*C-AAAAC 1
GUGGU-AG*C-GAAAC 1
GUGGU-AG*C-GAAGC 1
UAAGU-AC*G-GAAAG 1
UAAGU-AG*C-AAACA 1
UAAGU-AG*C-CAAAG 1
UAAGU-AG*U-GAACA 1
UCAGU-AG*C-GAGAA 1
UCGGU-AG*C-GAAGA 1
UGAAU-AG*C-GAAAG 1
UGAAU-AG*C-GGAAG 1
UGAGG-AG*C-CAAAG 1
UGAGU-AA*C-GAAAG 1
UGAGU-AA*C-GAAAU 1
UGAGU-AA*U-GAAAU 1
UGAGU-AG*C-GGAAG 1
UGAGU-CG*U-CAAAA 1
UGAUC-AG*U-GAAAG 1
UGAUU-AG*C-GAAAA 1
UGAUU-AG*U-GAAAG 1
UGGGU-AG*C-AAAAA 1
UUAGU-AC*G-GAAAA 1
UUAGU-AG*C-AAACG 1
UUAGU-AG*C-CAACA 1
UUAGU-AG*C-CAACG 1
UUAGU-AG*C-GAAAA 1
UUAGU-AG*C-GGGGA 1
UUAGU-AG*U-GAAAG 1
UUAGU-AG*U-GAGGA 1
UUAUU-AG*C-GAGGG 1
UUAUU-AG*U-GAGGG 1
UUGGU-AG*C-AAAGA 1
UUGGU-AG*U-GAAGA 1
AAA-U-AG*C-AAAAU 1
AAAGU-AG*C--AAAU 1
UGAGU-AG*C-A-AAG 1
---GU-AG*C-AAAGA 1
Omitted sequenced and counts
UGAGU-AG*C-MAAAG 1
UGAGU-AG*U-ANAAG 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_26307.2
Basepair signature:
|
98.24 | 70.41 | 2 | 1 |
7x6 Sarcin-Ricin; G-bulge |
| 2 |
Motif group IL_24254.1
Basepair signature:
|
95.63 | 18.35 | 6 | 3 |
7x6 Sarcin-Ricin with UU cWW pair; G-bulge |
| 3 |
Motif group IL_41756.4
Basepair signature:
|
80.39 | 15.74 | 5 | 2 |
8x6 Sarcin-Ricin with inserted Y; G-bulge |
| 4 |
Motif group IL_02349.4
Basepair signature:
|
73.41 | 10.57 | 5 | 3 |
8x6 Sarcin-Ricin with bulged A; G-bulge |
| 5 |
Motif group IL_29198.2
Basepair signature:
|
68.76 | 6.39 | 5 | 3 |
7x7 Sarcin-Ricin with intercalated A; G-bulge |
| 6 |
Motif group IL_61286.1
Basepair signature:
|
58.04 | 4.46 | 7 | 3 |
8x6 Sarcin-Ricin with inserted A; G-bulge |
| 7 |
Motif group IL_47346.2
Basepair signature:
|
39.28 | -9.65 | 5 | 3 |
tSH-tSH-tHH-tHS |
| 8 |
Motif group IL_16458.4
Basepair signature:
|
30.32 | -12.06 | 6 | 4 |
Sarcin-Ricin target in LSU H95; G-bulge |
| 9 |
Motif group IL_04346.10
Basepair signature:
|
20.52 | -11.53 | 4 | 3 |
8x7 Sarcin-Ricin; G-bulge |
| 10 |
Motif group IL_87284.1
Basepair signature:
|
10.72 | -31.24 | 5 | 3 |
tSH-tHW-tWH-tHS |
| 11 |
Motif group IL_88269.4
Basepair signature:
|
6.98 | -33.34 | 5 | 3 |
6x5 Sarcin-Ricin; G-bulge |
| 12 |
Motif group IL_32016.1
Basepair signature:
|
6.70 | -41.33 | 7 | 5 |
Kink-turn |
| 13 |
Motif group IL_09044.1
Basepair signature:
|
3.53 | -45.95 | 8 | 4 |
|
| 14 |
Motif group IL_88116.2
Basepair signature:
|
2.54 | -32.80 | 6 | 5 |
|
| 15 |
Motif group IL_65594.1
Basepair signature:
|
1.41 | -28.00 | 6 | 5 |
8x7 Sarcin-Ricin; G-bulge |
| 16 |
Motif group IL_59258.1
Basepair signature:
|
0.71 | -39.00 | 8 | 5 |
|
| 17 |
Motif group IL_58126.1
Basepair signature:
|
0.49 | -48.09 | 8 | 5 |
|
| 18 |
Motif group IL_31084.1
Basepair signature:
|
0.42 | -47.07 | 6 | 5 |
|
| 19 |
Motif group IL_09129.2
Basepair signature:
|
0.42 | -58.02 | 6 | 5 |
|
| 20 |
Motif group IL_06136.2
Basepair signature:
|
0.42 | -68.34 | 6 | 4 |
Quadruple sheared |
| 21 |
Motif group IL_04736.1
Basepair signature:
|
0.35 | -37.16 | 7 | 5 |
|
| 22 |
Motif group IL_69543.3
Basepair signature:
|
0.35 | -59.99 | 7 | 5 |
|
| 23 |
Motif group IL_34822.1
Basepair signature:
|
0.21 | -54.09 | 7 | 5 |
|
| 24 |
Motif group IL_78349.3
Basepair signature:
|
0.14 | -40.00 | 8 | 5 |
|
| 25 |
Motif group IL_31561.1
Basepair signature:
|
0.14 | -49.96 | 8 | 5 |
|
| 26 |
Motif group IL_85652.1
Basepair signature:
|
0.14 | -50.24 | 6 | 5 |
|
| 27 |
Motif group IL_42778.1
Basepair signature:
|
0.07 | -31.58 | 6 | 5 |
|
| 28 |
Motif group IL_54041.2
Basepair signature:
|
0.07 | -39.84 | 5 | 3 |
tHW-tHW cross-strand stack |
| 29 |
Motif group IL_71294.3
Basepair signature:
|
0.07 | -42.90 | 7 | 4 |
Double sheared; A in syn; two near cWW pairs |
| 30 |
Motif group IL_57188.5
Basepair signature:
|
0.07 | -50.13 | 5 | 5 |
Kink-turn related |
| 31 |
Motif group IL_62654.1
Basepair signature:
|
0.07 | -58.84 | 6 | 4 |
tSH-tHH-tHS |
| 32 |
Motif group IL_80231.1
Basepair signature:
|
0.07 | -60.16 | 6 | 5 |
Other IL |
| 33 |
Motif group IL_33886.1
Basepair signature:
|
0.07 | -61.60 | 6 | 5 |
Kink-turn with embedded cWW pair |
| 34 |
Motif group IL_01038.1
Basepair signature:
|
0.07 | -73.65 | 8 | 4 |
UAA/GAN with extra stack |
| 35 |
Motif group IL_68405.1
Basepair signature:
|
0.00 | -45.69 | 8 | 6 |
Kink-turn related |
| 36 |
Motif group IL_82292.1
Basepair signature:
|
0.00 | -49.24 | 7 | 5 |
|
| 37 |
Motif group IL_18487.1
Basepair signature:
|
0.00 | -49.88 | 8 | 6 |
|
| 38 |
Motif group IL_80926.1
Basepair signature:
|
0.00 | -53.89 | 7 | 4 |
|
| 39 |
Motif group IL_70801.1
Basepair signature:
|
0.00 | -54.21 | 9 | 5 |
|
| 40 |
Motif group IL_77045.1
Basepair signature:
|
0.00 | -55.19 | 8 | 5 |
Kink-turn |
| 41 |
Motif group IL_44438.1
Basepair signature:
|
0.00 | -55.26 | 8 | 5 |
|
| 42 |
Motif group IL_77278.1
Basepair signature:
|
0.00 | -60.26 | 8 | 6 |
|
| 43 |
Motif group IL_76308.6
Basepair signature:
|
0.00 | -62.17 | 6 | 5 |
tSH-tWH-tHS-cWW |
| 44 |
Motif group IL_12745.1
Basepair signature:
|
0.00 | -62.26 | 9 | 6 |
tWH-tWH-tHW-tHW |
| 45 |
Motif group IL_89099.1
Basepair signature:
|
0.00 | -67.09 | 9 | 6 |
Other IL |
| 46 |
Motif group IL_22564.1
Basepair signature:
|
0.00 | -68.96 | 8 | 5 |
|
| 47 |
Motif group IL_59724.1
Basepair signature:
|
0.00 | -70.59 | 7 | 6 |
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge |
| 48 |
Motif group IL_49767.8
Basepair signature:
|
0.00 | -72.03 | 6 | 4 |
UAA/GAN with extra cWW |
| 49 |
Motif group IL_69986.1
Basepair signature:
|
0.00 | -72.76 | 8 | 5 |
|
| 50 |
Motif group IL_17069.5
Basepair signature:
|
0.00 | -73.30 | 7 | 4 |
Kink-turn related |
| 51 |
Motif group IL_34470.3
Basepair signature:
|
0.00 | -73.44 | 6 | 5 |
9x8 Sarcin-Ricin with GA cWW pair; G-bulge |
| 52 |
Motif group IL_85536.2
Basepair signature:
|
0.00 | -75.97 | 7 | 5 |
|
| 53 |
Motif group IL_04600.1
Basepair signature:
|
0.00 | -77.83 | 8 | 5 |
|
| 54 |
Motif group IL_80604.6
Basepair signature:
|
0.00 | -77.93 | 8 | 5 |
|
| 55 |
Motif group IL_69229.3
Basepair signature:
|
0.00 | -80.39 | 7 | 6 |
Kink-turn |
| 56 |
Motif group IL_16665.1
Basepair signature:
|
0.00 | -82.09 | 8 | 6 |
|
| 57 |
Motif group IL_21667.1
Basepair signature:
|
0.00 | -82.46 | 7 | 4 |
|
| 58 |
Motif group IL_23038.1
Basepair signature:
|
0.00 | -84.10 | 9 | 7 |
|
| 59 |
Motif group IL_70627.3
Basepair signature:
|
0.00 | -84.89 | 6 | 4 |
UAA/GAN related |
| 60 |
Motif group IL_84694.2
Basepair signature:
|
0.00 | -85.02 | 8 | 6 |
tSH-tHW-tHH-tHS |
| 61 |
Motif group IL_01176.1
Basepair signature:
|
0.00 | -85.43 | 8 | 5 |
|
| 62 |
Motif group IL_85222.1
Basepair signature:
|
0.00 | -86.91 | 11 | 7 |
|
| 63 |
Motif group IL_20047.1
Basepair signature:
|
0.00 | -87.41 | 8 | 7 |
|
| 64 |
Motif group IL_58350.1
Basepair signature:
|
0.00 | -88.96 | 8 | 6 |
|
| 65 |
Motif group IL_95727.1
Basepair signature:
|
0.00 | -90.97 | 8 | 5 |
Kink-turn |
| 66 |
Motif group IL_78472.1
Basepair signature:
|
0.00 | -94.51 | 11 | 7 |
|
| 67 |
Motif group IL_74746.1
Basepair signature:
|
0.00 | -94.59 | 8 | 7 |
|
| 68 |
Motif group IL_04021.2
Basepair signature:
|
0.00 | -94.71 | 7 | 6 |
Triple sheared with non-canonical cWW |
| 69 |
Motif group IL_70923.9
Basepair signature:
|
0.00 | -95.45 | 6 | 4 |
Kink-turn |
| 70 |
Motif group IL_97697.1
Basepair signature:
|
0.00 | -96.04 | 10 | 7 |
Reverse turn |
| 71 |
Motif group IL_56317.1
Basepair signature:
|
0.00 | -96.14 | 9 | 6 |
|
| 72 |
Motif group IL_12697.1
Basepair signature:
|
0.00 | -96.49 | 8 | 5 |
|
| 73 |
Motif group IL_80412.1
Basepair signature:
|
0.00 | -97.81 | 10 | 7 |
|
| 74 |
Motif group IL_25186.4
Basepair signature:
|
0.00 | -97.92 | 8 | 5 |
|
| 75 |
Motif group IL_18472.4
Basepair signature:
|
0.00 | -98.21 | 8 | 5 |
|
| 76 |
Motif group IL_28026.3
Basepair signature:
|
0.00 | -98.82 | 6 | 4 |
|
| 77 |
Motif group IL_97631.1
Basepair signature:
|
0.00 | -99.20 | 8 | 5 |
Triple sheared related |
| 78 |
Motif group IL_96332.5
Basepair signature:
|
0.00 | -101.10 | 7 | 5 |
|
| 79 |
Motif group IL_06691.1
Basepair signature:
|
0.00 | -101.99 | 9 | 6 |
|
| 80 |
Motif group IL_09570.1
Basepair signature:
|
0.00 | -102.85 | 10 | 6 |
|
| 81 |
Motif group IL_94351.1
Basepair signature:
|
0.00 | -103.02 | 8 | 6 |
|
| 82 |
Motif group IL_85630.1
Basepair signature:
|
0.00 | -103.69 | 10 | 8 |
|
| 83 |
Motif group IL_68243.1
Basepair signature:
|
0.00 | -104.14 | 10 | 7 |
|
| 84 |
Motif group IL_29223.1
Basepair signature:
|
0.00 | -106.64 | 9 | 7 |
|
| 85 |
Motif group IL_70411.2
Basepair signature:
|
0.00 | -107.28 | 6 | 4 |
|
| 86 |
Motif group IL_99498.1
Basepair signature:
|
0.00 | -107.81 | 8 | 6 |
|
| 87 |
Motif group IL_55953.3
Basepair signature:
|
0.00 | -108.06 | 9 | 5 |
|
| 88 |
Motif group IL_43547.1
Basepair signature:
|
0.00 | -108.14 | 9 | 7 |
10x8 Sarcin-Ricin; G-bulge |
| 89 |
Motif group IL_70670.1
Basepair signature:
|
0.00 | -109.41 | 9 | 6 |
9x9 Sarcin-Ricin with pseudoknotted region; G-bulge |
| 90 |
Motif group IL_73759.1
Basepair signature:
|
0.00 | -110.14 | 9 | 6 |
Part of G-quadruplex |
| 91 |
Motif group IL_89312.1
Basepair signature:
|
0.00 | -111.14 | 7 | 5 |
|
| 92 |
Motif group IL_42231.1
Basepair signature:
|
0.00 | -111.83 | 9 | 8 |
|
| 93 |
Motif group IL_46174.3
Basepair signature:
|
0.00 | -112.14 | 8 | 6 |
Kink-turn with non-sequential stacking |
| 94 |
Motif group IL_49867.1
Basepair signature:
|
0.00 | -113.55 | 12 | 8 |
|
| 95 |
Motif group IL_04638.3
Basepair signature:
|
0.00 | -113.72 | 7 | 5 |
tSH-tHS-tHW |
| 96 |
Motif group IL_33141.1
Basepair signature:
|
0.00 | -114.04 | 8 | 7 |
|
| 97 |
Motif group IL_73700.1
Basepair signature:
|
0.00 | -115.51 | 9 | 8 |
|
| 98 |
Motif group IL_96788.1
Basepair signature:
|
0.00 | -115.83 | 7 | 5 |
|
| 99 |
Motif group IL_82683.2
Basepair signature:
|
0.00 | -117.07 | 7 | 4 |
|
| 100 |
Motif group IL_86012.1
Basepair signature:
|
0.00 | -119.57 | 9 | 7 |
|
| 101 |
Motif group IL_00981.1
Basepair signature:
|
0.00 | -119.92 | 8 | 5 |
UAA/GAN with tHH |
| 102 |
Motif group IL_21001.1
Basepair signature:
|
0.00 | -121.67 | 6 | 5 |
|
| 103 |
Motif group IL_94910.1
Basepair signature:
|
0.00 | -122.15 | 8 | 5 |
Kink-turn |
| 104 |
Motif group IL_37752.1
Basepair signature:
|
0.00 | -122.35 | 10 | 9 |
|
| 105 |
Motif group IL_64900.1
Basepair signature:
|
0.00 | -122.54 | 9 | 6 |
Kink-turn |
| 106 |
Motif group IL_22829.2
Basepair signature:
|
0.00 | -122.78 | 8 | 6 |
|
| 107 |
Motif group IL_44874.1
Basepair signature:
|
0.00 | -122.82 | 10 | 7 |
tSH-tHW |
| 108 |
Motif group IL_43858.1
Basepair signature:
|
0.00 | -123.14 | 10 | 8 |
|
| 109 |
Motif group IL_51265.3
Basepair signature:
|
0.00 | -123.28 | 6 | 5 |
Kink-turn from U4 |
| 110 |
Motif group IL_54177.4
Basepair signature:
|
0.00 | -123.93 | 10 | 7 |
|
| 111 |
Motif group IL_77870.1
Basepair signature:
|
0.00 | -124.59 | 10 | 7 |
|
| 112 |
Motif group IL_19048.1
Basepair signature:
|
0.00 | -126.77 | 9 | 6 |
|
| 113 |
Motif group IL_01488.3
Basepair signature:
|
0.00 | -126.84 | 7 | 5 |
Kink-turn |
| 114 |
Motif group IL_09908.1
Basepair signature:
|
0.00 | -128.15 | 10 | 6 |
Reverse kink-turn |
| 115 |
Motif group IL_13874.1
Basepair signature:
|
0.00 | -130.32 | 8 | 7 |
|
| 116 |
Motif group IL_42032.1
Basepair signature:
|
0.00 | -130.46 | 8 | 7 |
|
| 117 |
Motif group IL_31915.1
Basepair signature:
|
0.00 | -131.78 | 12 | 9 |
|
| 118 |
Motif group IL_74051.1
Basepair signature:
|
0.00 | -134.18 | 7 | 6 |
Kink-turn |
| 119 |
Motif group IL_33623.1
Basepair signature:
|
0.00 | -135.42 | 9 | 8 |
|
| 120 |
Motif group IL_24499.1
Basepair signature:
|
0.00 | -135.64 | 9 | 6 |
|
| 121 |
Motif group IL_29471.1
Basepair signature:
|
0.00 | -137.38 | 7 | 5 |
|
| 122 |
Motif group IL_34737.1
Basepair signature:
|
0.00 | -137.60 | 7 | 6 |
|
| 123 |
Motif group IL_49612.1
Basepair signature:
|
0.00 | -137.84 | 9 | 6 |
|
| 124 |
Motif group IL_36729.1
Basepair signature:
|
0.00 | -138.69 | 11 | 7 |
|
| 125 |
Motif group IL_43467.1
Basepair signature:
|
0.00 | -139.39 | 12 | 9 |
Pseudoknot |
| 126 |
Motif group IL_90346.1
Basepair signature:
|
0.00 | -139.53 | 8 | 6 |
|
| 127 |
Motif group IL_21630.1
Basepair signature:
|
0.00 | -139.84 | 11 | 7 |
|
| 128 |
Motif group IL_51191.1
Basepair signature:
|
0.00 | -140.32 | 8 | 6 |
|
| 129 |
Motif group IL_47108.1
Basepair signature:
|
0.00 | -140.38 | 7 | 6 |
|
| 130 |
Motif group IL_91636.1
Basepair signature:
|
0.00 | -141.03 | 11 | 7 |
|
| 131 |
Motif group IL_73002.1
Basepair signature:
|
0.00 | -142.20 | 13 | 10 |
|
| 132 |
Motif group IL_59049.1
Basepair signature:
|
0.00 | -142.85 | 12 | 9 |
|
| 133 |
Motif group IL_65851.3
Basepair signature:
|
0.00 | -143.06 | 10 | 6 |
|
| 134 |
Motif group IL_86136.1
Basepair signature:
|
0.00 | -143.94 | 8 | 6 |
|
| 135 |
Motif group IL_99692.2
Basepair signature:
|
0.00 | -144.67 | 7 | 6 |
Kink-turn |
| 136 |
Motif group IL_13358.1
Basepair signature:
|
0.00 | -147.71 | 11 | 10 |
|
| 137 |
Motif group IL_64403.1
Basepair signature:
|
0.00 | -147.73 | 9 | 7 |
|
| 138 |
Motif group IL_67623.1
Basepair signature:
|
0.00 | -148.20 | 10 | 6 |
Minor groove platform related |
| 139 |
Motif group IL_04307.1
Basepair signature:
|
0.00 | -148.50 | 10 | 9 |
|
| 140 |
Motif group IL_96236.1
Basepair signature:
|
0.00 | -149.51 | 9 | 6 |
|
| 141 |
Motif group IL_45444.1
Basepair signature:
|
0.00 | -151.97 | 7 | 6 |
|
| 142 |
Motif group IL_41853.1
Basepair signature:
|
0.00 | -153.73 | 8 | 7 |
|
| 143 |
Motif group IL_89047.1
Basepair signature:
|
0.00 | -153.88 | 12 | 9 |
|
| 144 |
Motif group IL_11344.2
Basepair signature:
|
0.00 | -156.29 | 8 | 5 |
180 degree turn |
| 145 |
Motif group IL_28304.1
Basepair signature:
|
0.00 | -156.42 | 10 | 9 |
|
| 146 |
Motif group IL_61242.1
Basepair signature:
|
0.00 | -158.29 | 8 | 7 |
|
| 147 |
Motif group IL_61440.1
Basepair signature:
|
0.00 | -159.04 | 5 | 4 |
Triple sheared |
| 148 |
Motif group IL_63519.1
Basepair signature:
|
0.00 | -159.05 | 9 | 5 |
|
| 149 |
Motif group IL_85879.1
Basepair signature:
|
0.00 | -159.67 | 11 | 8 |
|
| 150 |
Motif group IL_56455.6
Basepair signature:
|
0.00 | -160.36 | 8 | 6 |
Bacterial 5S Loop E |
| 151 |
Motif group IL_67780.1
Basepair signature:
|
0.00 | -161.10 | 7 | 5 |
|
| 152 |
Motif group IL_15107.1
Basepair signature:
|
0.00 | -161.36 | 12 | 10 |
|
| 153 |
Motif group IL_69271.3
Basepair signature:
|
0.00 | -161.72 | 9 | 7 |
|
| 154 |
Motif group IL_21200.1
Basepair signature:
|
0.00 | -164.02 | 6 | 4 |
tSH-tHW |
| 155 |
Motif group IL_81392.1
Basepair signature:
|
0.00 | -164.36 | 13 | 12 |
|
| 156 |
Motif group IL_57741.1
Basepair signature:
|
0.00 | -164.62 | 12 | 9 |
|
| 157 |
Motif group IL_00555.1
Basepair signature:
|
0.00 | -165.23 | 9 | 8 |
|
| 158 |
Motif group IL_22854.4
Basepair signature:
|
0.00 | -165.78 | 9 | 7 |
|
| 159 |
Motif group IL_69145.3
Basepair signature:
|
0.00 | -167.20 | 8 | 6 |
Pseudoknot |
| 160 |
Motif group IL_91592.1
Basepair signature:
|
0.00 | -168.66 | 8 | 6 |
|
| 161 |
Motif group IL_64842.1
Basepair signature:
|
0.00 | -169.43 | 10 | 7 |
|
| 162 |
Motif group IL_82706.1
Basepair signature:
|
0.00 | -170.10 | 8 | 8 |
|
| 163 |
Motif group IL_91920.1
Basepair signature:
|
0.00 | -171.45 | 8 | 5 |
|
| 164 |
Motif group IL_38862.4
Basepair signature:
|
0.00 | -171.94 | 4 | 3 |
5x5 Sarcin-Ricin with intercalated A; G-bulge |
| 165 |
Motif group IL_93889.1
Basepair signature:
|
0.00 | -171.96 | 10 | 9 |
|
| 166 |
Motif group IL_74367.1
Basepair signature:
|
0.00 | -172.46 | 7 | 6 |
|
| 167 |
Motif group IL_37603.1
Basepair signature:
|
0.00 | -172.54 | 10 | 8 |
|
| 168 |
Motif group IL_70096.1
Basepair signature:
|
0.00 | -172.65 | 9 | 8 |
Kink-turn related |
| 169 |
Motif group IL_91698.1
Basepair signature:
|
0.00 | -172.66 | 11 | 9 |
|
| 170 |
Motif group IL_95811.1
Basepair signature:
|
0.00 | -175.41 | 10 | 7 |
Vitamin B12 Aptamer |
| 171 |
Motif group IL_16218.2
Basepair signature:
|
0.00 | -175.72 | 8 | 6 |
|
| 172 |
Motif group IL_38507.2
Basepair signature:
|
0.00 | -176.60 | 5 | 4 |
UAA/GAN |
| 173 |
Motif group IL_05192.4
Basepair signature:
|
0.00 | -176.63 | 6 | 5 |
|
| 174 |
Motif group IL_37015.1
Basepair signature:
|
0.00 | -176.92 | 9 | 6 |
Kink-turn |
| 175 |
Motif group IL_05472.1
Basepair signature:
|
0.00 | -177.90 | 11 | 10 |
|
| 176 |
Motif group IL_04073.1
Basepair signature:
|
0.00 | -178.82 | 12 | 11 |
|
| 177 |
Motif group IL_61249.1
Basepair signature:
|
0.00 | -179.23 | 11 | 9 |
|
| 178 |
Motif group IL_17136.7
Basepair signature:
|
0.00 | -179.30 | 4 | 3 |
tSH-tWH-tHS |
| 179 |
Motif group IL_66798.2
Basepair signature:
|
0.00 | -180.56 | 5 | 4 |
AAA cross-strand stack |
| 180 |
Motif group IL_38634.5
Basepair signature:
|
0.00 | -180.89 | 8 | 6 |
cWH basepair and non-canonical AC |
| 181 |
Motif group IL_66663.1
Basepair signature:
|
0.00 | -182.15 | 11 | 9 |
|
| 182 |
Motif group IL_29357.1
Basepair signature:
|
0.00 | -190.09 | 12 | 10 |
|
| 183 |
Motif group IL_38969.1
Basepair signature:
|
0.00 | -190.78 | 10 | 8 |
Reverse kink-turn related |
| 184 |
Motif group IL_07469.2
Basepair signature:
|
0.00 | -191.55 | 6 | 6 |
|
| 185 |
Motif group IL_54050.1
Basepair signature:
|
0.00 | -191.85 | 9 | 8 |
|
| 186 |
Motif group IL_07173.1
Basepair signature:
|
0.00 | -197.46 | 9 | 6 |
|
| 187 |
Motif group IL_87290.1
Basepair signature:
|
0.00 | -197.64 | 14 | 11 |
Kink-turn related |
| 188 |
Motif group IL_68909.1
Basepair signature:
|
0.00 | -197.94 | 7 | 5 |
|
| 189 |
Motif group IL_74184.1
Basepair signature:
|
0.00 | -198.81 | 9 | 8 |
|
| 190 |
Motif group IL_88082.1
Basepair signature:
|
0.00 | -205.14 | 8 | 7 |
|
| 191 |
Motif group IL_26728.3
Basepair signature:
|
0.00 | -205.87 | 8 | 7 |
|
| 192 |
Motif group IL_06300.1
Basepair signature:
|
0.00 | -205.96 | 7 | 6 |
|
| 193 |
Motif group IL_74957.1
Basepair signature:
|
0.00 | -207.18 | 9 | 8 |
cWH basepair with bulged bases |
| 194 |
Motif group IL_71598.1
Basepair signature:
|
0.00 | -208.45 | 8 | 5 |
|
| 195 |
Motif group IL_88974.1
Basepair signature:
|
0.00 | -209.80 | 10 | 8 |
|
| 196 |
Motif group IL_60448.1
Basepair signature:
|
0.00 | -210.07 | 12 | 10 |
|
| 197 |
Motif group IL_17948.2
Basepair signature:
|
0.00 | -210.34 | 7 | 5 |
Double sheared with non-canonical cWW |
| 198 |
Motif group IL_73789.1
Basepair signature:
|
0.00 | -210.77 | 9 | 6 |
|
| 199 |
Motif group IL_85498.1
Basepair signature:
|
0.00 | -211.74 | 10 | 9 |
|
| 200 |
Motif group IL_67767.4
Basepair signature:
|
0.00 | -212.35 | 6 | 5 |
Receptor of 11-nt loop-receptor motif |
| 201 |
Motif group IL_49751.4
Basepair signature:
|
0.00 | -212.86 | 7 | 4 |
Triple non-canonical cWW pairs |
| 202 |
Motif group IL_62012.1
Basepair signature:
|
0.00 | -214.39 | 8 | 5 |
Decoding loop related |
| 203 |
Motif group IL_54896.1
Basepair signature:
|
0.00 | -214.76 | 10 | 9 |
|
| 204 |
Motif group IL_31558.1
Basepair signature:
|
0.00 | -215.26 | 6 | 5 |
|
| 205 |
Motif group IL_06029.1
Basepair signature:
|
0.00 | -218.05 | 15 | 12 |
Kink-turn |
| 206 |
Motif group IL_68574.4
Basepair signature:
|
0.00 | -220.07 | 6 | 5 |
|
| 207 |
Motif group IL_45896.1
Basepair signature:
|
0.00 | -220.80 | 12 | 12 |
|
| 208 |
Motif group IL_60797.1
Basepair signature:
|
0.00 | -221.17 | 12 | 8 |
|
| 209 |
Motif group IL_53448.1
Basepair signature:
|
0.00 | -222.10 | 6 | 5 |
Receptor of 11-nt loop-receptor motif |
| 210 |
Motif group IL_89021.2
Basepair signature:
|
0.00 | -222.67 | 6 | 4 |
UAA/GAN |
| 211 |
Motif group IL_75294.1
Basepair signature:
|
0.00 | -223.73 | 8 | 6 |
|
| 212 |
Motif group IL_69000.1
Basepair signature:
|
0.00 | -225.84 | 10 | 7 |
|
| 213 |
Motif group IL_43622.1
Basepair signature:
|
0.00 | -225.87 | 8 | 6 |
|
| 214 |
Motif group IL_70335.1
Basepair signature:
|
0.00 | -226.19 | 9 | 7 |
|
| 215 |
Motif group IL_33323.1
Basepair signature:
|
0.00 | -227.52 | 7 | 5 |
|
| 216 |
Motif group IL_80209.1
Basepair signature:
|
0.00 | -229.87 | 10 | 9 |
|
| 217 |
Motif group IL_76758.2
Basepair signature:
|
0.00 | -231.71 | 9 | 7 |
Intercalated tWH |
| 218 |
Motif group IL_48444.6
Basepair signature:
|
0.00 | -235.02 | 6 | 4 |
|
| 219 |
Motif group IL_60657.1
Basepair signature:
|
0.00 | -237.50 | 11 | 10 |
|
| 220 |
Motif group IL_14177.2
Basepair signature:
|
0.00 | -239.91 | 7 | 6 |
|
| 221 |
Motif group IL_50730.2
Basepair signature:
|
0.00 | -242.83 | 4.5 | 4 |
Triple sheared |
| 222 |
Motif group IL_98347.1
Basepair signature:
|
0.00 | -245.60 | 9 | 6 |
|
| 223 |
Motif group IL_65653.1
Basepair signature:
|
0.00 | -248.31 | 10 | 8 |
|
| 224 |
Motif group IL_30730.1
Basepair signature:
|
0.00 | -249.80 | 9 | 8 |
|
| 225 |
Motif group IL_58112.2
Basepair signature:
|
0.00 | -249.80 | 7 | 4 |
|
| 226 |
Motif group IL_65718.4
Basepair signature:
|
0.00 | -252.23 | 10 | 7 |
|
| 227 |
Motif group IL_11399.2
Basepair signature:
|
0.00 | -254.18 | 7 | 5 |
|
| 228 |
Motif group IL_84665.1
Basepair signature:
|
0.00 | -254.73 | 10 | 9 |
|
| 229 |
Motif group IL_12566.4
Basepair signature:
|
0.00 | -255.55 | 8 | 5 |
|
| 230 |
Motif group IL_19516.1
Basepair signature:
|
0.00 | -256.14 | 14 | 10 |
Pseudoknot |
| 231 |
Motif group IL_59302.1
Basepair signature:
|
0.00 | -257.34 | 7 | 6 |
|
| 232 |
Motif group IL_50715.3
Basepair signature:
|
0.00 | -257.45 | 13 | 11 |
|
| 233 |
Motif group IL_19668.1
Basepair signature:
|
0.00 | -264.32 | 8 | 5 |
Isolated non-canonical cWW pair |
| 234 |
Motif group IL_47087.1
Basepair signature:
|
0.00 | -268.37 | 10 | 6 |
Kink-turn related |
| 235 |
Motif group IL_10484.1
Basepair signature:
|
0.00 | -270.91 | 7 | 5 |
Double sheared |
| 236 |
Motif group IL_84251.1
Basepair signature:
|
0.00 | -274.18 | 6 | 5 |
|
| 237 |
Motif group IL_17973.1
Basepair signature:
|
0.00 | -274.60 | 16 | 13 |
|
| 238 |
Motif group IL_20463.1
Basepair signature:
|
0.00 | -280.97 | 9 | 6 |
7x11 Sarcin-Ricin with pseudoknotted region; G-bulge |
| 239 |
Motif group IL_97273.1
Basepair signature:
|
0.00 | -283.82 | 9 | 7 |
|
| 240 |
Motif group IL_81731.1
Basepair signature:
|
0.00 | -285.16 | 11 | 8 |
|
| 241 |
Motif group IL_04785.1
Basepair signature:
|
0.00 | -285.56 | 9 | 6 |
|
| 242 |
Motif group IL_42314.1
Basepair signature:
|
0.00 | -287.48 | 8 | 6 |
|
| 243 |
Motif group IL_58103.11
Basepair signature:
|
0.00 | -288.59 | 9 | 6 |
Symmetric double minor groove platform |
| 244 |
Motif group IL_15991.1
Basepair signature:
|
0.00 | -299.18 | 17 | 15 |
|
| 245 |
Motif group IL_23774.1
Basepair signature:
|
0.00 | -299.75 | 6 | 5 |
UAA/GAN variation |
| 246 |
Motif group IL_10389.1
Basepair signature:
|
0.00 | -302.38 | 8 | 6 |
|
| 247 |
Motif group IL_88072.1
Basepair signature:
|
0.00 | -302.46 | 9 | 8 |
|
| 248 |
Motif group IL_11415.1
Basepair signature:
|
0.00 | -304.42 | 10 | 9 |
|
| 249 |
Motif group IL_61299.4
Basepair signature:
|
0.00 | -304.63 | 8 | 6 |
|
| 250 |
Motif group IL_47972.1
Basepair signature:
|
0.00 | -305.99 | 7 | 6 |
|
| 251 |
Motif group IL_28564.1
Basepair signature:
|
0.00 | -308.49 | 8 | 6 |
|
| 252 |
Motif group IL_52743.1
Basepair signature:
|
0.00 | -309.62 | 9 | 7 |
|
| 253 |
Motif group IL_99646.2
Basepair signature:
|
0.00 | -311.47 | 6 | 5 |
tSH-tHW |
| 254 |
Motif group IL_13394.1
Basepair signature:
|
0.00 | -314.58 | 16 | 13 |
|
| 255 |
Motif group IL_66997.2
Basepair signature:
|
0.00 | -329.14 | 8 | 6 |
|
| 256 |
Motif group IL_76319.5
Basepair signature:
|
0.00 | -335.89 | 9 | 7 |
|
| 257 |
Motif group IL_80398.1
Basepair signature:
|
0.00 | -349.59 | 8 | 5 |
Minor groove platform |
| 258 |
Motif group IL_77691.5
Basepair signature:
|
0.00 | -349.80 | 6 | 5 |
UAA/GAN related |
| 259 |
Motif group IL_13404.2
Basepair signature:
|
0.00 | -351.18 | 8 | 7 |
Tandem non-canonical cWW pairs |
| 260 |
Motif group IL_09705.15
Basepair signature:
|
0.00 | -353.03 | 6 | 5 |
Double sheared |
| 261 |
Motif group IL_69440.3
Basepair signature:
|
0.00 | -357.57 | 9 | 5 |
|
| 262 |
Motif group IL_64231.5
Basepair signature:
|
0.00 | -362.83 | 7 | 5 |
|
| 263 |
Motif group IL_19102.1
Basepair signature:
|
0.00 | -363.19 | 7 | 6 |
|
| 264 |
Motif group IL_82426.6
Basepair signature:
|
0.00 | -364.74 | 9 | 9 |
|
| 265 |
Motif group IL_89984.3
Basepair signature:
|
0.00 | -368.10 | 10 | 8 |
|
| 266 |
Motif group IL_28788.1
Basepair signature:
|
0.00 | -376.48 | 9 | 7 |
|
| 267 |
Motif group IL_20245.1
Basepair signature:
|
0.00 | -377.18 | 19 | 16 |
|
| 268 |
Motif group IL_49061.1
Basepair signature:
|
0.00 | -377.29 | 7 | 5 |
|
| 269 |
Motif group IL_76460.1
Basepair signature:
|
0.00 | -378.91 | 16 | 15 |
|
| 270 |
Motif group IL_85033.2
Basepair signature:
|
0.00 | -379.29 | 6 | 5 |
Tandem non-canonical cWW pairs |
| 271 |
Motif group IL_94684.1
Basepair signature:
|
0.00 | -382.02 | 7 | 7 |
|
| 272 |
Motif group IL_83149.1
Basepair signature:
|
0.00 | -383.31 | 18 | 16 |
|
| 273 |
Motif group IL_43644.1
Basepair signature:
|
0.00 | -387.06 | 10 | 7 |
Other IL |
| 274 |
Motif group IL_81522.2
Basepair signature:
|
0.00 | -392.30 | 9 | 7 |
Major groove minor groove platform with intercalation; mini C-loop |
| 275 |
Motif group IL_61476.2
Basepair signature:
|
0.00 | -393.36 | 5 | 5 |
|
| 276 |
Motif group IL_25872.4
Basepair signature:
|
0.00 | -396.04 | 7 | 6 |
|
| 277 |
Motif group IL_29826.1
Basepair signature:
|
0.00 | -398.14 | 18 | 17 |
|
| 278 |
Motif group IL_02203.1
Basepair signature:
|
0.00 | -399.69 | 9 | 8 |
|
| 279 |
Motif group IL_01994.1
Basepair signature:
|
0.00 | -401.80 | 8 | 6 |
|
| 280 |
Motif group IL_61341.1
Basepair signature:
|
0.00 | -403.86 | 7 | 6 |
|
| 281 |
Motif group IL_96759.1
Basepair signature:
|
0.00 | -413.40 | 6 | 6 |
|
| 282 |
Motif group IL_25573.1
Basepair signature:
|
0.00 | -415.35 | 9 | 6 |
|
| 283 |
Motif group IL_78800.1
Basepair signature:
|
0.00 | -415.81 | 9 | 7 |
|
| 284 |
Motif group IL_51479.1
Basepair signature:
|
0.00 | -419.59 | 7 | 6 |
|
| 285 |
Motif group IL_41344.1
Basepair signature:
|
0.00 | -419.68 | 7 | 6 |
|
| 286 |
Motif group IL_15698.3
Basepair signature:
|
0.00 | -425.23 | 7 | 6 |
|
| 287 |
Motif group IL_99358.1
Basepair signature:
|
0.00 | -430.10 | 7 | 5 |
|
| 288 |
Motif group IL_95570.1
Basepair signature:
|
0.00 | -433.88 | 7 | 6 |
|
| 289 |
Motif group IL_30441.1
Basepair signature:
|
0.00 | -436.16 | 13 | 11 |
|
| 290 |
Motif group IL_34739.3
Basepair signature:
|
0.00 | -437.52 | 20 | 17 |
|
| 291 |
Motif group IL_54737.1
Basepair signature:
|
0.00 | -440.12 | 18 | 17 |
|
| 292 |
Motif group IL_80298.1
Basepair signature:
|
0.00 | -440.53 | 19 | 18 |
|
| 293 |
Motif group IL_07785.1
Basepair signature:
|
0.00 | -448.25 | 8 | 7 |
Isolated non-canonical cWW pair |
| 294 |
Motif group IL_55516.2
Basepair signature:
|
0.00 | -448.58 | 7 | 6 |
|
| 295 |
Motif group IL_92446.2
Basepair signature:
|
0.00 | -450.96 | 8 | 7 |
|
| 296 |
Motif group IL_96303.1
Basepair signature:
|
0.00 | -452.39 | 12 | 11 |
|
| 297 |
Motif group IL_90351.1
Basepair signature:
|
0.00 | -463.50 | 7 | 6 |
|
| 298 |
Motif group IL_46387.1
Basepair signature:
|
0.00 | -463.97 | 8 | 7 |
|
| 299 |
Motif group IL_44325.1
Basepair signature:
|
0.00 | -468.09 | 7 | 6 |
|
| 300 |
Motif group IL_77658.1
Basepair signature:
|
0.00 | -475.62 | 8 | 7 |
Tandem non-canonical cWW pairs |
| 301 |
Motif group IL_08770.1
Basepair signature:
|
0.00 | -480.48 | 7 | 6 |
|
| 302 |
Motif group IL_51387.2
Basepair signature:
|
0.00 | -490.41 | 7 | 6 |
|
| 303 |
Motif group IL_84476.1
Basepair signature:
|
0.00 | -497.15 | 8 | 7 |
Multiple bulged bases |
| 304 |
Motif group IL_96371.1
Basepair signature:
|
0.00 | -502.39 | 9 | 7 |
|
| 305 |
Motif group IL_53581.1
Basepair signature:
|
0.00 | -502.90 | 12 | 10 |
Kink-turn related |
| 306 |
Motif group IL_04332.3
Basepair signature:
|
0.00 | -509.55 | 12 | 11 |
|
| 307 |
Motif group IL_36516.3
Basepair signature:
|
0.00 | -513.78 | 8 | 6 |
|
| 308 |
Motif group IL_22373.1
Basepair signature:
|
0.00 | -514.08 | 10 | 7 |
8-nt loop receptor |
| 309 |
Motif group IL_14688.1
Basepair signature:
|
0.00 | -519.47 | 9 | 7 |
Isolated non-canonical cWW pair |
| 310 |
Motif group IL_31737.3
Basepair signature:
|
0.00 | -520.53 | 7 | 6 |
Stack and bulge |
| 311 |
Motif group IL_64858.3
Basepair signature:
|
0.00 | -523.42 | 17 | 14 |
|
| 312 |
Motif group IL_25463.1
Basepair signature:
|
0.00 | -524.58 | 8 | 5 |
|
| 313 |
Motif group IL_57744.1
Basepair signature:
|
0.00 | -537.61 | 7 | 6 |
Isolated non-canonical cWW pair |
| 314 |
Motif group IL_57881.1
Basepair signature:
|
0.00 | -548.07 | 10 | 7 |
Multiple bulged bases |
| 315 |
Motif group IL_31531.3
Basepair signature:
|
0.00 | -560.36 | 7 | 6 |
Decoding loop related |
| 316 |
Motif group IL_03350.1
Basepair signature:
|
0.00 | -562.11 | 11 | 8 |
Reverse kink-turn related |
| 317 |
Motif group IL_06549.2
Basepair signature:
|
0.00 | -562.57 | 9 | 6 |
|
| 318 |
Motif group IL_63596.11
Basepair signature:
|
0.00 | -577.36 | 7 | 6 |
C-loop |
| 319 |
Motif group IL_67095.2
Basepair signature:
|
0.00 | -579.84 | 8 | 6 |
Isolated tWW turn |
| 320 |
Motif group IL_79846.1
Basepair signature:
|
0.00 | -582.20 | 13 | 12 |
|
| 321 |
Motif group IL_42997.3
Basepair signature:
|
0.00 | -585.40 | 7 | 7 |
Isolated cWS basepair |
| 322 |
Motif group IL_85599.2
Basepair signature:
|
0.00 | -585.66 | 7 | 7 |
Isolated tHS basepair with bulges |
| 323 |
Motif group IL_44465.1
Basepair signature:
|
0.00 | -587.65 | 7 | 7 |
Isolated non-canonical cWW contact |
| 324 |
Motif group IL_42218.2
Basepair signature:
|
0.00 | -592.89 | 12 | 11 |
|
| 325 |
Motif group IL_10167.6
Basepair signature:
|
0.00 | -594.33 | 7 | 7 |
Isolated cWH basepair |
| 326 |
Motif group IL_09990.4
Basepair signature:
|
0.00 | -594.89 | 9 | 8 |
|
| 327 |
Motif group IL_87907.2
Basepair signature:
|
0.00 | -611.88 | 7 | 6 |
Isolated non-canonical cWW pair |
| 328 |
Motif group IL_31504.1
Basepair signature:
|
0.00 | -623.53 | 15 | 13 |
|
| 329 |
Motif group IL_61438.4
Basepair signature:
|
0.00 | -666.43 | 8 | 7 |
|
| 330 |
Motif group IL_83150.2
Basepair signature:
|
0.00 | -670.25 | 8 | 6 |
|
| 331 |
Motif group IL_82741.2
Basepair signature:
|
0.00 | -675.70 | 10 | 8 |
|
| 332 |
Motif group IL_10796.1
Basepair signature:
|
0.00 | -679.10 | 10 | 9 |
|
| 333 |
Motif group IL_83389.2
Basepair signature:
|
0.00 | -708.77 | 8 | 6 |
|
| 334 |
Motif group IL_28037.2
Basepair signature:
|
0.00 | -740.60 | 8 | 8 |
Isolated non-canonical cWW pair |
| 335 |
Motif group IL_47078.3
Basepair signature:
|
0.00 | -750.05 | 9 | 7 |
Minor groove platform |
| 336 |
Motif group IL_82107.4
Basepair signature:
|
0.00 | -768.97 | 7 | 6 |
Multiple bulged bases |
| 337 |
Motif group IL_84409.1
Basepair signature:
|
0.00 | -4508.20 | 15 | 14 |
|
| 338 |
Motif group IL_75283.2
Basepair signature:
|
0.00 | -4714.71 | 12 | 11 |
|
| 339 |
Motif group IL_43140.1
Basepair signature:
|
0.00 | -5147.44 | 11 | 10 |
|
| 340 |
Motif group IL_64048.1
Basepair signature:
|
0.00 | -5156.44 | 10 | 8 |
|
| 341 |
Motif group IL_04650.2
Basepair signature:
|
0.00 | -5187.24 | 12 | 11 |
|
| 342 |
Motif group IL_32056.1
Basepair signature:
|
0.00 | -5201.78 | 10 | 8 |
|
| 343 |
Motif group IL_49971.1
Basepair signature:
|
0.00 | -5202.97 | 9 | 8 |
|
| 344 |
Motif group IL_53787.1
Basepair signature:
|
0.00 | -5245.98 | 14 | 13 |
Pseudoknot |
| 345 |
Motif group IL_81516.2
Basepair signature:
|
0.00 | -5278.53 | 12 | 9 |
|
| 346 |
Motif group IL_17765.1
Basepair signature:
|
0.00 | -5335.35 | 9 | 8 |
|
| 347 |
Motif group IL_44624.1
Basepair signature:
|
0.00 | -5338.65 | 9 | 8 |
|
| 348 |
Motif group IL_19897.3
Basepair signature:
|
0.00 | -5350.76 | 11 | 9 |
|
| 349 |
Motif group IL_19852.1
Basepair signature:
|
0.00 | -5370.32 | 15 | 14 |
Part of G-quadruplex |
| 350 |
Motif group IL_21173.1
Basepair signature:
|
0.00 | -5565.84 | 12 | 9 |
|
| 351 |
Motif group IL_55917.1
Basepair signature:
|
0.00 | -5698.72 | 10 | 8 |
|
| 352 |
Motif group IL_53596.1
Basepair signature:
|
0.00 | -5788.81 | 11 | 9 |
|
| 353 |
Motif group IL_15218.1
Basepair signature:
|
0.00 | -5832.97 | 10 | 9 |
|
| 354 |
Motif group IL_82968.1
Basepair signature:
|
0.00 | -5937.46 | 10 | 8 |
|
| 355 |
Motif group IL_58960.1
Basepair signature:
|
0.00 | -5989.32 | 8 | 8 |
|
| 356 |
Motif group IL_27393.10
Basepair signature:
|
0.00 | -6133.73 | 11 | 8 |
|
| 357 |
Motif group IL_46112.1
Basepair signature:
|
0.00 | -6169.89 | 12 | 9 |
|
| 358 |
Motif group IL_18354.1
Basepair signature:
|
0.00 | -6235.71 | 10 | 9 |
|
| 359 |
Motif group IL_88017.1
Basepair signature:
|
0.00 | -6348.50 | 9 | 6 |
|
| 360 |
Motif group IL_33711.1
Basepair signature:
|
0.00 | -6412.82 | 10 | 8 |
Minor groove platform |
| 361 |
Motif group IL_26598.1
Basepair signature:
|
0.00 | -6533.36 | 10 | 8 |
|
| 362 |
Motif group IL_24134.1
Basepair signature:
|
0.00 | -6645.99 | 8 | 5 |
Kink-turn |
| 363 |
Motif group IL_25412.1
Basepair signature:
|
0.00 | -6659.62 | 9 | 8 |
Major groove intercalation |
| 364 |
Motif group IL_26222.2
Basepair signature:
|
0.00 | -6769.96 | 7 | 5 |
C-loop with bulged stacked A's |
| 365 |
Motif group IL_99380.1
Basepair signature:
|
0.00 | -7053.54 | 11 | 9 |
|
| 366 |
Motif group IL_38394.1
Basepair signature:
|
0.00 | -7155.89 | 9 | 6 |
|
| 367 |
Motif group IL_46086.1
Basepair signature:
|
0.00 | -7345.89 | 7 | 7 |
|
| 368 |
Motif group IL_41203.4
Basepair signature:
|
0.00 | -7423.20 | 9 | 8 |
SSU/LSU pseudoknot |
| 369 |
Motif group IL_92634.2
Basepair signature:
|
0.00 | -7501.96 | 9 | 7 |
|
| 370 |
Motif group IL_49714.1
Basepair signature:
|
0.00 | -7644.08 | 9 | 6 |
Major groove intercalation |
| 371 |
Motif group IL_87211.1
Basepair signature:
|
0.00 | -7666.56 | 8 | 8 |
|
| 372 |
Motif group IL_70376.1
Basepair signature:
|
0.00 | -7946.45 | 8 | 7 |
|
| 373 |
Motif group IL_38186.6
Basepair signature:
|
0.00 | -8272.72 | 9 | 7 |
|
| 374 |
Motif group IL_07039.3
Basepair signature:
|
0.00 | -8343.32 | 9 | 8 |
Major groove platform |
| 375 |
Motif group IL_26685.1
Basepair signature:
|
0.00 | -8714.63 | 9 | 7 |
Multiple bulged bases |
| 376 |
Motif group IL_07171.1
Basepair signature:
|
0.00 | -9673.47 | 9 | 7 |
Bulged stacked bases |
| 377 |
Motif group IL_00225.13
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Single bulged G |
| 378 |
Motif group IL_00881.1
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
|
| 379 |
Motif group IL_02555.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Major groove platform with intercalation |
| 380 |
Motif group IL_03109.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
C-loop |
| 381 |
Motif group IL_10569.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 382 |
Motif group IL_14368.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Major groove platform with intercalated tWH |
| 383 |
Motif group IL_15052.4
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Minor groove platform |
| 384 |
Motif group IL_16386.4
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 385 |
Motif group IL_20031.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 386 |
Motif group IL_22551.4
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 387 |
Motif group IL_26793.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
Single stack bend |
| 388 |
Motif group IL_29346.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 6 |
Left turn |
| 389 |
Motif group IL_31462.6
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Single bulged A |
| 390 |
Motif group IL_33761.2
Basepair signature:
|
0.00 | -9999.00 | 9 | 7 |
|
| 391 |
Motif group IL_42626.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 392 |
Motif group IL_42771.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Multiple bulged bases |
| 393 |
Motif group IL_47074.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 394 |
Motif group IL_48076.6
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Major groove platform |
| 395 |
Motif group IL_50694.7
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Major groove platform; stack outside cWW |
| 396 |
Motif group IL_51454.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Minor groove platform |
| 397 |
Motif group IL_56987.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 7 |
|
| 398 |
Motif group IL_59877.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 399 |
Motif group IL_61258.15
Basepair signature:
|
0.00 | -9999.00 | 9 | 9 |
Single bulged C |
| 400 |
Motif group IL_63775.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 9 |
|
| 401 |
Motif group IL_66635.5
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
Major groove intercalation |
| 402 |
Motif group IL_68140.4
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Major groove minor groove platform; mini C-loop |
| 403 |
Motif group IL_73355.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 404 |
Motif group IL_73452.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 405 |
Motif group IL_76709.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 406 |
Motif group IL_79895.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 7 |
|
| 407 |
Motif group IL_81831.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Intercalated cWS |
| 408 |
Motif group IL_89505.4
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
Single bulged U |
| 409 |
Motif group IL_90729.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Single stack bend |
| 410 |
Motif group IL_94967.1
Basepair signature:
|
0.00 | -9999.00 | 10 | 8 |
|
| 411 |
Motif group IL_95583.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
Minor groove platform, major groove intercalation |