RNA 3D Hub

JAR3D Query RF03064-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 4 Internal loop

Column numbers: 66-70, 114-119 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    U--AU*A----A   54

    
    G-UAU*AU---C   43

    
    U--AG*C----A   32

    
    A-UCU*AG---U   28

    
    A-UAU*AU---U   22

    
    U--AC*GU---A   20

    
    U-UAU*AU---A   14

    
    C--AG*C----G   14

    
    A---G*C----U   14

    
    A-UUU*AAA--U   13

    
    A-UUU*AA---U   13

    
    U--AG*C----G   12

    
    U-UAC*GUU--U   11

    
    U---A*U----A   10

    
    A-UUU*AG---U    9

    
    U--AU*AU---U    9

    
    C-UUU*AAA--G    8

    
    G-UAU*AAU--C    8

    
    G-UCU*AG---C    8

    
    G--AG*UU---G    8

    
    U--GG*C----A    8

    
    U--UG*C----A    7

    
    A---U*A----U    7

    
    A-UAU*AAU--U    6

    
    A-UCC*GUU--U    6

    
    A-CAU*GU---U    6

    
    C-UCA*UG---G    6

    
    G--AG*CGU--G    6

    
    U-UGA*UC---A    6

    
    A--CG*C----U    6

    
    G--UG*C----C    6

    
    U--A-*U----A    6

    
    U-UUU*AAA--A    5

    
    C-UAA*UU---G    5

    
    U-UU-*AAA--A    5

    
    G--AG*U----G    5

    
    G--AU*A----C    5

    
    C---A*U----G    5

    
    U---G*C----U    5

    
    GAUAA*UUA--C    4

    
    U-UUU*AAG--A    4

    
    A-UUU*GA---U    4

    
    AAUUA*U----U    4

    
    C-UAU*AA---G    4

    
    U-UGU*AU---G    4

    
    U--UU*AA---A    4

    
    A--AU*U----U    4

    
    C-U-G*C----G    4

    
    G--AA*U----C    4

    
    U--GC*G----A    4

    
    U-UUU*AUAAAA    3

    
    G--AU*AUAGAC    3

    
    GUUGC*GAA--C    3

    
    A-GUG*CGC--U    3

    
    A-UAC*GUU--U    3

    
    A-UUA*UAG--U    3

    
    C-UUU*AGA--G    3

    
    G-UGU*GAC--C    3

    
    U-UGC*GAC--A    3

    
    U-UUA*UUU--A    3

    
    A-UUU*AU---U    3

    
    C-UGC*GC---G    3

    
    G-UGU*AU---C    3

    
    G-UUU*AU---C    3

    
    U-GUU*AA---A    3

    
    U-UAU*AU---G    3

    
    U-UGU*AG---G    3

    
    U-UGU*GC---A    3

    
    C--AC*GU---U    3

    
    C-UGU*C----G    3

    
    G---U*GAC--C    3

    
    G-UA-*-AU--C    3

    
    A--AG*C----U    3

    
    C--AG*C----C    3

    
    U--AC*G----G    3

    
    A---A*U----U    3

    
    A-UAA*UUA--U    2

    
    A-UAU*AGU--U    2

    
    U-GUG*CAU--A    2

    
    U-UGA*UCU--G    2

    
    U-UGC*GUU--U    2

    
    U-UGU*AGU--G    2

    
    U-UUG*CAU--U    2

    
    U-UUU*AAG--G    2

    
    A-GUU*AA---U    2

    
    A-UAA*UA---U    2

    
    A-UAU*GU---U    2

    
    A-UCU*AG---G    2

    
    A-UGC*GC---U    2

    
    C-GGU*GC---G    2

    
    G-AUU*AA---C    2

    
    G-UAU*AU---U    2

    
    G-UCU*AG---U    2

    
    U-UUU*AA---G    2

    
    A--AU*GA---U    2

    
    A-UUU*A----U    2

    
    AAUU-*U----U    2

    
    C---C*GAG--G    2

    
    C--AG*CC---G    2

    
    C-AAG*C----G    2

    
    U---A*UAG--A    2

    
    U---G*CAG--G    2

    
    U---G*CGG--A    2

    
    U--AA*UU---A    2

    
    U--AC*GU---U    2

    
    --AAG*UA----    2

    
    --UAG*CG----    2

    
    A--UG*C----U    2

    
    A-UA-*A----U    2

    
    C--AC*G----G    2

    
    G--AG*C----C    2

    
    G--AG*U----A    2

    
    U--AA*U----A    2

    
    U--AG*U----G    2

    
    A--A-*-U---A    2

    
    G--A-*U----C    2

    
    U---C*G----A    2

    
    AGUAA*UUCGCU    1

    
    GUUGG*CGGAAC    1

    
    UAGAU*AUAUCA    1

    
    UCGAA*GUAAGG    1

    
    A-UCU*AUUGAU    1

    
    C-UGU*GUAACG    1

    
    C-UUU*AUCUAG    1

    
    C-UUU*GUGAAG    1

    
    U-GAG*CAAAAU    1

    
    U-GUG*CUCAUA    1

    
    U-GUG*CUCAUG    1

    
    UUUAA*UU-UUA    1

    
    A-UUU*-UCAAU    1

    
    ACGCU*AAC--U    1

    
    CAGUC*GGC--G    1

    
    CAUGC*GUA--A    1

    
    CUCAG*CUG--G    1

    
    GAGAC*GUU--A    1

    
    GAUUA*UAU--C    1

    
    GAUUG*CAU--C    1

    
    GUUGC*GAA--U    1

    
    UGUAG*CAU--A    1

    
    UGUUG*CAC--A    1

    
    A-AUA*UAU--U    1

    
    A-CGC*AAC--U    1

    
    A-GAU*AUC--U    1

    
    A-GUG*UGC--U    1

    
    A-UAC*GUA--U    1

    
    A-UAU*GAU--U    1

    
    A-UCG*CGA--U    1

    
    A-UUG*CAG--U    1

    
    A-UUU*AAU--U    1

    
    ACUAC*GGA---    1

    
    C-AAG*GAU--G    1

    
    C-AAU*--CACG    1

    
    C-UAA*UUU--G    1

    
    C-UGU*GAC--G    1

    
    C-UUA*UAA--U    1

    
    C-UUU*AAG--G    1

    
    C-UUU*GGA--G    1

    
    G-UGA*UUU--C    1

    
    G-UGU*AAC--C    1

    
    G-UUU*AGA--U    1

    
    GGUUG*---GAC    1

    
    U-CUA*UUU--A    1

    
    U-GAA*UUU--A    1

    
    U-UAC*GGC--A    1

    
    U-UAC*GGU--A    1

    
    U-UAC*GUA--U    1

    
    U-UAC*GUC--U    1

    
    U-UAU*AUU--U    1

    
    U-UAU*GAC--A    1

    
    U-UGA*UCU--A    1

    
    U-UUA*UAA--A    1

    
    U-UUA*UAA--U    1

    
    U-UUU*GAA--G    1

    
    UAGAU*UU---A    1

    
    A--AU*GUU--U    1

    
    A--CC*GAU--A    1

    
    A-AAU*AU---U    1

    
    A-CAU*AU---U    1

    
    A-GCU*GU---U    1

    
    A-UAC*GU---U    1

    
    A-UAU*AA---U    1

    
    A-UCU*AGG---    1

    
    A-UGU*AC---U    1

    
    A-UGU*AU---U    1

    
    A-UUC*GA---U    1

    
    A-UUU*AA---C    1

    
    A-UUU*CA---U    1

    
    AAUGA*U----U    1

    
    AAUUU*A----U    1

    
    AGUAA*U----U    1

    
    C--AC*GAU--G    1

    
    C--AG*UAU--G    1

    
    C--UU*GAG--G    1

    
    C-UAA*UU---A    1

    
    C-UAA*UU---U    1

    
    C-UAU*AU---G    1

    
    C-UAU*AUU---    1

    
    C-UGU*AC---G    1

    
    C-UGU*GC---G    1

    
    CGGCU*A----G    1

    
    G--UG*AAC--C    1

    
    G-AAU*AU---C    1

    
    G-CAU*AU---C    1

    
    G-CCU*AG---U    1

    
    G-GUU*GA---C    1

    
    G-UAU*AC---C    1

    
    G-UAU*AC---G    1

    
    G-UAU*AU---A    1

    
    G-UCU*AG---G    1

    
    G-UGC*GU---G    1

    
    G-UGU*AC---U    1

    
    G-UUU*AA---C    1

    
    G-UUU*AA---U    1

    
    U---A*UGUU-A    1

    
    U--AU*UAA--A    1

    
    U--UU*AAG--G    1

    
    U-ACA*UU---A    1

    
    U-AGU*AG---G    1

    
    U-AGU*AU---G    1

    
    U-GAU*AU---A    1

    
    U-U-C*GCG--G    1

    
    U-UAA*UA---A    1

    
    U-UAA*UU---A    1

    
    U-UAU*AA---A    1

    
    U-UAU*AG---A    1

    
    U-UAU*AU---U    1

    
    U-UCA*UG---G    1

    
    U-UGA*UU---A    1

    
    U-UGC*GC---G    1

    
    U-UGU*AU---A    1

    
    UACAA*U----A    1

    
    --UAU*AUU---    1

    
    A---A*UAU--U    1

    
    A---U*AGC--U    1

    
    A--AC*-AU--U    1

    
    A--AU*AU---U    1

    
    A--UG*UG---U    1

    
    A-UA-*UA---U    1

    
    A-UCU*G----U    1

    
    A-UGU*C----U    1

    
    A-UU-*---AAU    1

    
    C---G*UUU--G    1

    
    C---U*GAG--G    1

    
    C--AG*CA---G    1

    
    C--AU*AA---G    1

    
    C--CU*AA---G    1

    
    C--GU*AA---G    1

    
    C-AUC*G----G    1

    
    C-GGG*C----G    1

    
    C-U-U*AA---G    1

    
    C-UAG*UA----    1

    
    CUUA-*A----G    1

    
    G---U*AAC--C    1

    
    G---U*AGC--C    1

    
    G--AA*UU---G    1

    
    G--AU*GA---U    1

    
    G--UG*CA---U    1

    
    G-UAU*----UC    1

    
    GAUA-*A----C    1

    
    U---A*UAU--A    1

    
    U---C*GAG--G    1

    
    U---G*CAU--A    1

    
    U--AU*AA---A    1

    
    U--AU*AU---A    1

    
    U--AU*AU---G    1

    
    U--GU*AU---A    1

    
    U--UG*CA---A    1

    
    U-CGA*--U--A    1

    
    U-CGA*-U---A    1

    
    U-U-G*CU---U    1

    
    U-U-G*UU---U    1

    
    U-UAC*U----U    1

    
    U-UCU*G----U    1

    
    U-UG-*-AA--A    1

    
    U-UGU*C----A    1

    
    U-UU-*-AA--A    1

    
    U-UUG*C----A    1

    
    U-UUU*A----A    1

    
    U-UUU*A----G    1

    
    ---AG*CUA---    1

    
    ---AU*AAA---    1

    
    --AAG*CA----    1

    
    --GAG*CA----    1

    
    A---A*UU---U    1

    
    A---U*---AAU    1

    
    A---U*GA---U    1

    
    A--AA*U----U    1

    
    A--GG*C----U    1

    
    A-AA-*U----U    1

    
    A-U-G*C----U    1

    
    A-U-U*A----U    1

    
    C---U*AA---A    1

    
    C---U*AA---G    1

    
    C--CG*C----U    1

    
    C--UU*G----G    1

    
    C-AA-*--U--G    1

    
    CGG--*A----G    1

    
    G--AA*U----U    1

    
    G--UG*C----U    1

    
    G-U-G*C----C    1

    
    U---G*UU---U    1

    
    U---U*AA---A    1

    
    U--A-*-GU--A    1

    
    U--AC*G----A    1

    
    U--AU*A----G    1

    
    U--AU*A----U    1

    
    U--AU*U----A    1

    
    U--CG*C----A    1

    
    U--GU*A----A    1

    
    U--UG*C----G    1

    
    U-CG-*--G--A    1

    
    U-U-A*U----A    1

    
    U-UA-*--U--A    1

    
    U-UA-*A----A    1

    
    ---AC*AA----    1

    
    A---C*C----U    1

    
    A---C*G----U    1

    
    A--A-*U----A    1

    
    G---A*U----G    1

    
    G---G*C----C    1

    
    G---G*C----U    1

    
    G-U--*A----C    1

    
    U---A*U----G    1

    
    U---G*U----A    1

    
    U---U*A----G    1

    
    U---U*A----U    1

    
    U--A-*--U--A    1

    
    Omitted sequenced and counts

    
    U----*-----G   89

    
    U-UA-*-----G   55

    
    -----*------   34

    
    U-UC-*-----G   32

    
    --AA-*------   30

    
    U-U--*-----A   27

    
    U-U--*-----G   19

    
    C-UU-*-----G   18

    
    U--A-*-----A   18

    
    G--A-*-----G   17

    
    U--A-*-----G   15

    
    U-UU-*-----G   12

    
    A----*-----U   11

    
    U-AA-*-----G   10

    
    C-U--*-----G    9

    
    C----*-----G    8

    
    G----*-----G    6

    
    C-CA-*-----G    5

    
    U-UU-*-----A    5

    
    A-G--*-----U    5

    
    G--A-*--G---    5

    
    U----*-----A    5

    
    A-UA-*-----U    4

    
    G-UA-*-----U    4

    
    G--A-*-----C    4

    
    G--A-*-----U    4

    
    U-U--*-----U    4

    
    UUUA-*-----A    3

    
    C-AA-*-----G    3

    
    C-UC-*-----G    3

    
    U-UA-*-----A    3

    
    U-UA-*-----U    3

    
    C--A-*-----G    3

    
    C-UAA*-----G    2

    
    CGCA-*-----G    2

    
    UAUA-*-----G    2

    
    UCUA-*-----A    2

    
    UUUU-*-----A    2

    
    A-UC-*-----U    2

    
    A-UU-*-----U    2

    
    C----*-AA--G    2

    
    C-GA-*-----G    2

    
    C-UA-*-----G    2

    
    C-UU-*-----A    2

    
    CAU--*-----G    2

    
    G-UC-*-----G    2

    
    A-U--*-----G    2

    
    A-U--*-----U    2

    
    G----*C----C    2

    
    G-U--*-----C    2

    
    U-A--*-----G    2

    
    A----*-----C    2

    
    G----*-----C    2

    
    A-UAU*A-----    1

    
    GGUU-*-----C    1

    
    U-UAG*-----A    1

    
    UAUU-*-----A    1

    
    UUUA-*-----G    1

    
    UUUA-*-----U    1

    
    A-GA-*-----U    1

    
    A-UG-*-----U    1

    
    A-UU-*-----A    1

    
    A-UU-*-----G    1

    
    C-GC-*-----G    1

    
    C-UG-*-----G    1

    
    G----*AG---G    1

    
    G-UA-*-----G    1

    
    GGU--*-----C    1

    
    U--AU*-----A    1

    
    U-CA-*-----G    1

    
    U-GA-*-----A    1

    
    U-GG-*-----A    1

    
    U-UU-*-----C    1

    
    A--A-*-----C    1

    
    A--A-*-----G    1

    
    A--A-*-----U    1

    
    C-A--*-----G    1

    
    C-C--*-----G    1

    
    C-U--*-----A    1

    
    G---A*-----G    1

    
    G-U--*-----G    1

    
    U-U--*-----C    1

    
    G----*-----U    1

    
    U----*-----U    1

    
    U-U--*------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

54.74 -21.94 3 1

Stack and bulge

2

Motif group IL_42771.1

Basepair signature:
cWW-cWW

48.91 -29.11 3 1

Multiple bulged bases

3

Motif group IL_82107.4

Basepair signature:
cWW-cWW

43.31 -41.11 3 1

Multiple bulged bases

4

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

40.46 -18.25 4 2

5

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

35.54 -30.69 4 2

6

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

33.26 -51.15 4 2

Isolated non-canonical cWW pair

7

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

28.69 -84.06 5 3

8

Motif group IL_83389.2

Basepair signature:
cWW-cWW

27.31 -62.11 4 2

9

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

27.20 -48.19 3 2

Isolated non-canonical cWW pair

10

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

23.20 -56.84 3 2

Isolated non-canonical cWW contact

11

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

21.03 -103.92 4 2

12

Motif group IL_84476.1

Basepair signature:
cWW-cWW

20.69 -41.62 4 2

Multiple bulged bases

13

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

19.66 -92.43 4 3

14

Motif group IL_42626.2

Basepair signature:
cWW-cWW

19.54 -544.21 3 2

15

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

17.37 -86.48 4 2

16

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

15.54 -59.96 5 3

17

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

14.40 -86.12 5 3

18

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

14.29 -72.53 3 1

Isolated cWS basepair

19

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

13.94 -59.72 3 2

Isolated non-canonical cWW pair

20

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

13.03 -83.61 2 1

Isolated non-canonical cWW pair

21

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

12.80 -96.42 5 2

22

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

12.80 -99.50 5 2

23

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

11.66 -103.56 4 2

Intercalated cWS

24

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

9.94 -65.47 5 2

25

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

8.46 -123.25 4 2

Major groove intercalation

26

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

8.34 -98.02 3 1

Isolated cWH basepair

27

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

7.77 -101.20 4 2

28

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

7.77 -108.98 5 2

29

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

7.77 -122.74 5 2

30

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

7.09 -3556.83 4 3

31

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

6.86 -100.41 4 2

Major groove platform

32

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

6.86 -131.17 3 2

Single stack bend

33

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

6.63 -78.87 6 4

34

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

6.40 -139.26 5 3

35

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

6.06 -136.54 5 3

Major groove minor groove platform with intercalation; mini C-loop

36

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

6.06 -156.43 4 2

Tandem non-canonical cWW pairs

37

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

5.94 -143.63 3 2

Single stack bend

38

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

5.71 -106.97 5 3

39

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

5.60 -157.38 6 2

40

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

5.49 -174.89 3 2

Single bulged G

41

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

5.26 -98.80 4 2

Isolated tWW turn

42

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

5.26 -145.33 4 2

Tandem non-canonical cWW pairs

43

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

5.26 -184.63 3 3

Single bulged C

44

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

4.91 -149.10 5 3

Other IL

45

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

4.34 -125.27 2 2

Isolated non-canonical cWW pair

46

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

4.23 -109.34 5 2

Isolated tHS basepair with bulges

47

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

3.77 -113.53 6 3

48

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

3.43 -104.78 4 2

Decoding loop related

49

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

3.31 -91.10 6 4

50

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

3.20 -115.39 5 3

51

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

3.20 -135.69 5 3

52

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

3.20 -181.40 3 3

Single bulged A

53

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

3.09 -88.33 5 3

54

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

2.97 -158.16 5 3

55

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

2.74 -141.97 5 3

56

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

2.74 -387.97 3 2

Minor groove platform

57

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

2.63 -174.05 4 3

58

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

2.51 -181.54 6 3

59

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

2.40 -89.98 6 3

60

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

2.40 -126.92 5 3

Tandem non-canonical cWW pairs

61

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

2.40 -133.51 5 4

62

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

2.40 -180.52 5 3

63

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

2.29 -131.03 6 3

Minor groove platform

64

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

2.29 -319.18 4 3

65

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

2.17 -362.80 4 3

Minor groove platform, major groove intercalation

66

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

2.06 -206.57 4 3

67

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

2.06 -311.47 3 2

Major groove platform

68

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

1.94 -97.13 5 3

69

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

1.94 -116.17 6 4

180 degree turn

70

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

1.94 -127.19 4 3

71

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

1.71 -314.59 3 2

Minor groove platform

72

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

1.71 -362.41 4 2

Major groove platform with intercalation

73

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

1.71 -409.18 3 2

Major groove minor groove platform; mini C-loop

74

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

1.60 -83.27 6 4

75

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

1.60 -107.20 6 3

Multiple bulged bases

76

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

1.49 -95.51 6 3

77

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

1.49 -198.67 6 3

78

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

1.37 -102.61 6 5

79

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

1.37 -172.89 3 2

Single bulged U

80

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

1.37 -424.80 3 2

Major groove platform; stack outside cWW

81

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

1.26 -75.12 6 3

82

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

1.26 -131.13 6 3

Double sheared

83

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

1.03 -117.40 5 3

84

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

1.03 -163.97 5 3

85

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

1.03 -296.23 6 3

86

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.91 -69.82 5 4

87

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.91 -98.13 6 4

88

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.91 -104.66 7 5

Kink-turn related

89

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.91 -121.11 5 3

90

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.91 -125.10 7 5

91

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.91 -135.02 7 4

92

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.91 -144.88 5 3

93

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.91 -150.83 5 4

tSH-tHW

94

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.91 -163.03 6 3

95

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.80 -98.00 6 3

96

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.80 -102.70 7 5

97

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.80 -129.56 6 5

98

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.80 -192.58 5 3

99

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.80 -207.02 4 3

Double sheared

100

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.69 -115.36 7 5

101

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.69 -306.25 7 5

102

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.69 -350.38 5 3

Major groove platform with intercalated tWH

103

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.69 -429.48 7 5

Major groove intercalation

104

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.57 -219.16 6 4

105

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.46 -93.64 6 3

106

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.46 -99.46 6 4

107

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.46 -104.43 7 5

108

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.46 -126.13 7 5

109

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.46 -136.68 7 5

110

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.46 -137.55 7 5

tSH-tHW

111

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.46 -143.37 6 3

112

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.46 -152.66 6 4

113

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.46 -176.54 6 3

114

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.46 -190.84 5 4

UAA/GAN variation

115

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.46 -200.02 5 4

Bulged stacked bases

116

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.34 -107.33 6 3

117

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.34 -111.72 6 5

118

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.34 -112.04 7 5

119

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.34 -119.37 5 2

120

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.34 -195.26 7 5

121

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.34 -300.89 7 4

122

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.34 -377.38 7 4

123

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.23 -88.48 5 3

124

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.23 -102.57 5 3

125

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.23 -129.66 7 4

126

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.23 -163.15 7 4

127

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.23 -219.70 7 4

128

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.11 -92.79 6 4

129

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.11 -96.05 6 4

Intercalated tWH

130

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.11 -109.03 7 4

Decoding loop related

131

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.11 -111.93 7 5

132

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.11 -117.48 6 4

Receptor of 11-nt loop-receptor motif

133

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.11 -117.56 7 5

134

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.11 -120.35 7 5

135

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.11 -131.81 5 3

Receptor of 11-nt loop-receptor motif

136

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.11 -132.56 9 6

137

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.11 -133.48 7 4

138

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.11 -167.39 8 7

139

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.11 -270.03 6 4

Left turn

140

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.11 -309.40 6 5

141

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.11 -331.41 6 4

142

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.11 -458.69 6 4

143

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.11 -524.66 5 3

144

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.11 -9999.00 4 3

C-loop

145

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -87.51 7 5

146

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -98.42 7 4

147

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -103.76 7 4

148

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -106.99 7 5

Pseudoknot

149

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -107.16 7 5

150

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -110.72 8 5

151

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -113.47 7 4

152

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -114.44 7 5

153

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -120.00 8 6

154

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -120.80 8 5

155

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -121.39 7 5

156

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -123.10 7 4

157

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -124.77 7 5

158

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -127.45 7 5

159

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -128.35 9 6

160

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -128.97 8 6

161

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -129.44 6 4

Isolated non-canonical cWW pair

162

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -130.11 8 6

163

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -130.58 8 6

164

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -132.83 7 4

165

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -134.81 8 5

166

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -134.88 8 6

tSH-tHW

167

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -135.08 7 4

168

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -138.28 8 6

Part of G-quadruplex

169

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -139.14 6 3

170

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -139.61 8 6

171

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -141.54 5 3

UAA/GAN

172

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -142.78 7 6

173

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -142.80 7 5

UAA/GAN related

174

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -146.79 9 7

175

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -147.34 7 5

176

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -147.71 7 5

177

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -148.21 9 7

178

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -148.79 5 4

179

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -148.87 6 5

AAA cross-strand stack

180

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -151.30 7 6

Triple sheared related

181

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -151.51 8 6

UAA/GAN with extra stack

182

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -152.92 9 7

183

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -153.18 7 5

184

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -153.75 7 4

185

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -153.88 7 5

cWH basepair and non-canonical AC

186

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -154.00 7 5

6x5 Sarcin-Ricin; G-bulge

187

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -156.23 8 7

Reverse turn

188

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -157.32 8 7

189

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -158.80 9 7

190

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -160.22 7 6

191

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -164.11 9 7

192

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -164.44 9 7

193

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -165.20 9 6

Reverse kink-turn

194

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -165.96 8 6

195

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -167.45 5 3

196

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -169.36 8 6

Other IL

197

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -169.42 9 6

198

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -170.62 9 7

Reverse kink-turn related

199

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -171.00 8 6

Kink-turn with embedded cWW pair

200

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -171.42 8 6

UAA/GAN with tHH

201

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -172.03 9 6

202

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -173.30 7 5

tSH-tHH-tHS

203

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -173.72 8 6

Vitamin B12 Aptamer

204

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -175.24 8 6

205

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -175.25 9 8

Kink-turn related

206

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -179.49 8 6

Double sheared; A in syn; two near cWW pairs

207

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -180.29 9 7

208

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -181.03 9 8

209

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -181.56 9 7

210

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -181.88 6 4

UAA/GAN

211

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -182.65 8 7

212

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -182.77 9 7

213

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -183.10 9 7

214

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -185.31 9 7

215

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -186.39 9 7

216

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -186.42 11 8

217

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -187.34 8 6

218

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -190.07 9 8

219

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -190.78 9 7

tHW-tHW cross-strand stack

220

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -191.18 9 8

tWH-tWH-tHW-tHW

221

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -191.45 10 8

222

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -191.52 6 4

UAA/GAN related

223

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -191.92 9 7

224

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -192.04 7 5

225

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -193.12 9 7

Sarcin-Ricin target in LSU H95; G-bulge

226

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -193.28 9 7

Kink-turn

227

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -193.79 6 4

Multiple bulged bases

228

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -195.37 8 6

Kink-turn related

229

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -198.34 8 7

230

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -198.64 10 8

231

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -199.75 11 8

232

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -200.37 8 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

233

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -201.50 11 8

234

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -201.85 10 8

235

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -204.57 9 7

Other IL

236

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -207.38 10 7

237

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -207.90 8 6

UAA/GAN with extra cWW

238

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -212.04 10 8

8x6 Sarcin-Ricin with inserted A; G-bulge

239

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -212.69 9 8

240

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -213.08 10 8

241

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -216.60 10 8

242

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -217.34 9 7

tSH-tSH-tHH-tHS

243

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -218.41 7 5

Triple sheared

244

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -218.72 11 9

245

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -219.12 8 7

Kink-turn

246

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -219.43 8 7

7x6 Sarcin-Ricin; G-bulge

247

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -220.44 8 6

tSH-tWH-tHS-cWW

248

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -220.96 11 9

249

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -224.79 10 9

250

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -224.97 9 7

251

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -225.62 10 8

252

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -227.74 7 6

253

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -227.99 10 9

254

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -228.11 9 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

255

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -229.14 9 8

Triple sheared with non-canonical cWW

256

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -229.62 10 9

257

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -231.07 8 6

258

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -231.65 11 9

259

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -232.40 10 8

260

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -233.95 10 9

261

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -235.12 11 9

262

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -235.83 7 6

263

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -236.83 8 7

tSH-tHW-tWH-tHS

264

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -237.39 10 8

tSH-tHS-tHW

265

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -237.75 8 5

Kink-turn from U4

266

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -238.11 5 4

Triple non-canonical cWW pairs

267

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -238.76 12 10

268

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -240.90 9 7

269

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -241.01 8 6

270

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -241.21 10 8

8x6 Sarcin-Ricin with inserted Y; G-bulge

271

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -241.27 6 4

Double sheared with non-canonical cWW

272

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -241.60 10 8

8x6 Sarcin-Ricin with bulged A; G-bulge

273

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -241.98 11 9

274

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -245.40 10 8

275

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -248.05 10 8

Kink-turn

276

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -249.02 4 3

277

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -251.44 10 8

278

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -252.60 6 4

279

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -253.33 10 9

280

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -254.19 11 9

281

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -257.90 10 9

8x7 Sarcin-Ricin; G-bulge

282

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -260.08 12 10

283

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -260.25 10 8

284

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -261.29 6 5

tSH-tWH-tHS

285

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -264.25 6 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

286

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -265.01 10 9

287

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -266.58 11 10

288

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -266.61 9 8

8x7 Sarcin-Ricin; G-bulge

289

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -267.61 8 7

290

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -269.04 8 6

Quadruple sheared

291

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -270.38 12 10

292

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -271.37 12 10

293

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -272.37 8 7

Kink-turn

294

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -272.61 8 6

295

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -272.70 14 12

296

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -274.44 10 8

297

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -275.17 12 10

tSH-tHW-tHH-tHS

298

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -275.57 9 8

299

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -279.41 11 11

300

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -279.66 11 9

301

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -281.01 13 10

302

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -282.23 11 10

303

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -283.41 11 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

304

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -290.19 7 6

305

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -290.56 14 13

306

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -293.46 6 5

Triple sheared

307

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -294.73 16 14

308

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -295.13 13 11

309

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -296.46 10 9

Kink-turn

310

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -297.40 12 10

311

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -297.76 10 9

Kink-turn

312

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -299.42 12 11

313

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -304.77 8 6

cWH basepair with bulged bases

314

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -305.30 12 11

315

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -308.47 16 14

Kink-turn related

316

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -309.14 13 12

317

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -310.39 10 9

318

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -312.79 12 11

319

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -313.83 12 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

320

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -315.52 13 12

10x8 Sarcin-Ricin; G-bulge

321

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -315.73 15 14

Pseudoknot

322

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -317.35 11 9

323

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -317.91 10 8

Reverse kink-turn related

324

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -318.42 8 6

325

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -320.30 10 8

Kink-turn

326

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -321.60 13 11

327

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -321.90 15 14

328

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -323.58 13 11

329

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -324.40 13 11

330

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -325.74 12 10

331

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -326.66 13 11

332

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -326.68 11 10

333

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -327.10 17 15

334

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -329.29 11 10

335

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -329.93 8 6

Kink-turn related

336

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -330.96 14 13

337

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -335.43 9 8

Minor groove platform

338

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -338.27 9 7

Kink-turn

339

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -338.87 10 9

340

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -341.94 10 8

Minor groove platform related

341

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -345.13 15 14

342

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -351.89 13 12

Pseudoknot

343

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -352.82 8 7

Kink-turn

344

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -357.79 12 11

345

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -357.85 14 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

346

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -358.79 18 16

Kink-turn

347

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -363.44 10 8

Kink-turn

348

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -363.75 13 12

349

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -366.13 16 14

350

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -368.99 13 12

351

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -371.34 9 7

352

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -373.22 7 5

353

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -374.04 16 15

354

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -376.35 12 11

355

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -378.89 13 12

356

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -382.51 13 12

Bacterial 5S Loop E

357

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -385.78 11 10

358

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -386.94 12 11

359

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -388.11 13 12

360

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -390.61 13 12

361

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -390.86 15 13

Pseudoknot

362

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -401.97 10 8

363

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -402.07 14 12

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

364

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -403.92 18 16

365

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -407.37 15 14

366

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -413.41 18 16

367

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -416.46 6 4

368

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -420.44 8 7

369

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -423.57 18 17

370

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -424.53 8 6

371

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -426.83 11 10

Kink-turn related

372

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -428.59 10 8

373

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -429.76 6 3

8-nt loop receptor

374

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -435.11 18 17

375

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -443.23 16 14

376

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -447.12 9 8

Kink-turn

377

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -448.00 5 4

Minor groove platform

378

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -448.73 9 6

379

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -449.74 6 4

Symmetric double minor groove platform

380

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -457.60 15 14

381

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -463.27 8 7

382

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -469.06 9 7

383

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -483.95 18 17

Kink-turn related

384

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -494.62 8 6

385

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -504.07 21 20

386

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -507.88 7 6

SSU/LSU pseudoknot

387

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -526.41 20 19

388

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -527.46 6 4

389

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -532.33 21 20

390

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -551.04 22 21

391

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -574.47 23 22

392

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -666.93 9 8

Kink-turn with non-sequential stacking

393

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -683.83 10 8

394

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -691.46 12 9

395

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -733.28 11 10

Part of G-quadruplex

396

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -733.89 11 10

397

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -773.68 8 6

Major groove intercalation

398

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -775.03 12 10

399

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -779.47 14 12

400

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -782.06 12 10

401

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -896.92 20 19

402

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -899.44 14 13

403

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -901.88 8 7

404

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -926.12 10 7

Kink-turn

405

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6189.70 9 7

406

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6840.09 6 4

C-loop with bulged stacked A's

407

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8509.51 4 3

C-loop

408

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 20 19

409

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 17 16

410

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 22 21

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 5 3

Coloring options: