RNA 3D Hub

JAR3D Query RF03064-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 1 Internal loop

Column numbers: 5-10, 135-144 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    U-GGAG*C-GUUGA-AG  122

    
    U-GGAG*C-GAUGA-AG   75

    
    U-GGAG*C-AAUGA-AG   54

    
    U-GGAG*C-GUAGA-AG   51

    
    U-GGAG*C-UAUGA-AG   42

    
    U-GGAG*C-GUUGA-AA   39

    
    U-GGAG*C-GAUGA-AA   37

    
    U-GGAG*C-GAUGA-AU   36

    
    U-GGAC*G-GUUGA-AG   35

    
    U-GGAG*C-AUUGA-AG   34

    
    U-GGAG*C-GUUGA-AU   27

    
    U-GGAU*G-GAUGA-AG   27

    
    C-GGAG*C-GAUGA-AC   25

    
    C-GGAG*C-GUAGA-AC   25

    
    U-GGAG*C-GAAGA-AG   21

    
    U-GGAG*U-UAUGA-AG   19

    
    U-GGAC*G-GAAGA-AG   16

    
    U-GGAC*G-GAUGA-AG   16

    
    U-GGAC*G-GGUGA-AG   16

    
    U-GGAG*C-UAUGA-AU   16

    
    U-GGAG*C-GAUGA-AC   14

    
    C-GGAG*C-GUUGA-AC   13

    
    U-GGAG*C-GACGA-AG   13

    
    U-GGAG*C-AUUGA-AA   12

    
    U-GGAG*C-AUUGA-AU   11

    
    U-GGAG*C-GGUGA-AG   11

    
    U-GGAG*C-GAGGA-AA   10

    
    U-GGAG*C-GCUGA-AG   10

    
    U-UGAG*C-GAUGA-UG   10

    
    C-GGAG*C-GAUGA-AG    9

    
    U-GGAG*C-AAUGA-AA    9

    
    U-GGAG*C-AUAGA-AG    9

    
    U-UGAG*C-AGUGA-UG    9

    
    C-GGAC*G-GUUGA-AC    8

    
    G-GGAG*C-GUUGA-AU    8

    
    U-GGAG*C-AUCGA-AG    8

    
    U-GGAG*C-GGCGA-AG    8

    
    U-GGAG*C-UGUGA-AG    8

    
    U-UGAG*C-GUUGA-UG    8

    
    C-GGAG*C-GUAGA-AA    7

    
    C-UGAG*C-GUAGA-AC    7

    
    U-GGAC*G-GUAGA-AG    7

    
    U-GGAG*C-AAUGA-AU    7

    
    U-GGAG*C-GAAGA-AA    7

    
    U-GGAG*C-GAUGA-CA    7

    
    U-GGAG*C-GGUGA-AU    7

    
    U-GAAG*C-GUUGA-AA    6

    
    U-GGAC*G-GAUGA-AA    6

    
    U-GGAG*C-AAGGA-AG    6

    
    U-GGAG*C-GUAGA-AC    6

    
    U-GGAG*C-UAAGA-AG    6

    
    U-GGAG*C-UAUGA-AA    6

    
    U-GGAG*C-UGAGA-AG    6

    
    U-GGAU*G-GAUGA-AA    6

    
    C-GGAG*C-GAAGA-AC    5

    
    U-AGAG*C-GUUGA-AG    5

    
    U-GGAC*G-GAAGA-AA    5

    
    U-GGAC*G-GUUGA-AA    5

    
    U-GGAG*C-AGAGA-AG    5

    
    U-GGAG*C-GGUGA-CA    5

    
    U-GGAU*G-GUUGA-AA    5

    
    U-UGAA*G-GAGGA-AA    5

    
    UUGGAG*C-AAUGA-AG    4

    
    C-GGAG*C-GAUGA-AA    4

    
    C-GGAG*U-GAUGA-AC    4

    
    G-GGAG*C-UGUGA-AU    4

    
    U-GAAG*C-GAUGA-AG    4

    
    U-GAAG*C-GUAGA-AG    4

    
    U-GAAU*G-GAUGA-AG    4

    
    U-GGAC*G-GGAGA-AG    4

    
    U-GGAG*C-AGCGA-AG    4

    
    U-GGAG*C-AGUGA-AG    4

    
    U-GGAG*C-GAGGA-AG    4

    
    U-GGAG*C-GAUAA-AG    4

    
    U-GGAG*C-UGUGA-AU    4

    
    U-GGAG*U-GAUGA-AC    4

    
    U-GGAG*U-GAUGA-AG    4

    
    U-GGAU*G-GUUGA-AG    4

    
    U-UAAG*C-GUUGA-AG    4

    
    U-UGAG*C-GGUGA-UG    4

    
    U-GGAG*CGUUUGA-AA    3

    
    C-GGAG*C-AUUGA-AC    3

    
    C-GGAG*C-GAAGA-AA    3

    
    U-GAAG*C-GUUGA-AG    3

    
    U-GGAA*U-GACGA-AA    3

    
    U-GGAC*G-GAUGA-AU    3

    
    U-GGAG*C-AUUGA-AC    3

    
    U-GGAG*C-CAUGA-AU    3

    
    U-GGAG*C-GCAGA-AG    3

    
    U-GGAG*C-GGCGA-AA    3

    
    U-GGAG*C-GUCGA-AA    3

    
    U-GGAG*C-GUUGA-AC    3

    
    U-GGAG*C-UACGA-AG    3

    
    U-GGAG*C-UGUGA-AA    3

    
    U-GGAG*C-UUUGA-AG    3

    
    U-GGAG*U-GAUGA-AA    3

    
    U-GGAG*U-GUUGA-AU    3

    
    U-GGAG*U-UAAGA-AG    3

    
    U-GGAU*G-AAUGA-AG    3

    
    U-GGAG*CUAAUGA-AG    2

    
    A-GGAG*C-AAUGA-AU    2

    
    A-GGAG*C-GAUGA-AU    2

    
    A-GGAG*C-GUUGA-AC    2

    
    C-AGAG*C-GAUGA-AG    2

    
    C-AGAG*C-GUUGA-AC    2

    
    C-GGAC*G-GAUGA-AA    2

    
    C-GGAC*G-GAUGA-AC    2

    
    C-GGAG*C-AAUGA-AA    2

    
    C-GGAG*C-GGUGA-AC    2

    
    C-GGAG*C-GGUGA-AG    2

    
    C-GGAG*C-GUUGA-AA    2

    
    C-GGAG*C-GUUGA-AG    2

    
    C-GGAG*U-AAUGA-AC    2

    
    U-GAAG*C-AUCGA-AG    2

    
    U-GAAG*C-GGCGA-AG    2

    
    U-GGAA*C-GUAGA-AA    2

    
    U-GGAC*G-GAUGA-AC    2

    
    U-GGAC*G-GGUGA-AA    2

    
    U-GGAC*G-GUCGA-AG    2

    
    U-GGAC*G-GUUGA-AU    2

    
    U-GGAG*C-AAAGA-AA    2

    
    U-GGAG*C-AAAGA-AG    2

    
    U-GGAG*C-AACGA-AG    2

    
    U-GGAG*C-AAUGA-AC    2

    
    U-GGAG*C-AGUGA-AA    2

    
    U-GGAG*C-AGUGA-AU    2

    
    U-GGAG*C-GAAGA-AU    2

    
    U-GGAG*C-GCUGA-AA    2

    
    U-GGAG*C-GGAGA-AG    2

    
    U-GGAG*C-GGUGA-AA    2

    
    U-GGAG*C-GGUGA-AC    2

    
    U-GGAG*C-GUAGA-AA    2

    
    U-GGAG*C-GUUAA-AU    2

    
    U-GGAG*C-UGAGA-AA    2

    
    U-GGAG*C-UGCGA-AG    2

    
    U-GGAG*C-UUUGA-AA    2

    
    U-GGAG*U-AUUGA-AG    2

    
    U-GGAG*U-GGUGA-AG    2

    
    U-GGAG*U-GUAGA-AG    2

    
    U-GGAG*U-GUUGA-AA    2

    
    U-GGAG*U-GUUGA-AG    2

    
    U-GGAU*A-GAUGA-AG    2

    
    U-GGAU*G-AAGGA-AG    2

    
    U-UGAG*G-GAGGA-AA    2

    
    UGGGAG*C-GAAGAAAG    1

    
    AGGGAG*U-AAUGA-AC    1

    
    CUGGAG*C-GUAGA-AC    1

    
    GAAGAG*C-UAUGA-AU    1

    
    GAAGAG*U-GAUGA-AC    1

    
    U-GAAG*CGAAUGA-UA    1

    
    U-GGAG*C-AAUGAAGU    1

    
    U-GGAG*C-AUUGAAAG    1

    
    U-GGAG*C-GCUGAAAG    1

    
    U-GGAG*CGAUUGA-AG    1

    
    U-GGAG*CGGACGA-AG    1

    
    U-GGAG*CGUAUGA-AU    1

    
    U-GGAG*CGUUUGA-AG    1

    
    U-GGAG*CUAAAGA-AC    1

    
    UUGGAG*C-UAUGA-AG    1

    
    A-GGAG*C-GAUGA-GU    1

    
    A-GGAG*C-UAAGA-AU    1

    
    A-GGAG*C-UAUGA-AU    1

    
    A-UGAG*C-GAUGA-AU    1

    
    C-AAAG*U-GUAGA-AC    1

    
    C-GAAG*C-GAUGA-AC    1

    
    C-GAAG*C-GUAGA-AC    1

    
    C-GGAC*G-GAAGA-AC    1

    
    C-GGAC*G-GUUGA-AA    1

    
    C-GGAC*U-GCUGA-AG    1

    
    C-GGAG*C-AAAGA-AA    1

    
    C-GGAG*C-AAUGA-AG    1

    
    C-GGAG*C-AGUGA-AA    1

    
    C-GGAG*C-GAUGA-AU    1

    
    C-GGAG*C-GAUGA-GC    1

    
    C-GGAG*C-GUUAA-AC    1

    
    C-GGAG*C-UAUGA-AA    1

    
    C-GGAG*C-UUAGA-AC    1

    
    C-GGAG*U-GAUGA-AU    1

    
    C-UGAA*C-GUAGA-AC    1

    
    C-UGAG*C-GUUGA-AC    1

    
    C-UGAG*C-GUUGA-UG    1

    
    G-GAAG*C-AAUGA-AU    1

    
    G-GAAG*U-UAUGA-AU    1

    
    G-GGAG*C-AAUGA-AU    1

    
    G-GGAG*C-ACUGA-AU    1

    
    G-GGAG*C-AUUGA-AU    1

    
    G-GGAG*C-GAUGA-AA    1

    
    G-GGAG*C-GAUGA-AC    1

    
    G-GGAG*C-GAUGA-AU    1

    
    G-GGAG*C-GAUGA-CA    1

    
    G-GGAG*C-GCUGA-AC    1

    
    G-GGAG*U-GUUGA-AU    1

    
    U-AGAA*C-AUUGA-AU    1

    
    U-AGAC*G-GAGGA-AA    1

    
    U-AGAC*G-GUUGA-UG    1

    
    U-AGAG*C-AUUGA-AU    1

    
    U-AGAG*C-GACGA-AG    1

    
    U-AGAG*C-GAUGA-AG    1

    
    U-AGAG*C-GUUGA-AA    1

    
    U-AGAG*C-GUUGA-AU    1

    
    U-AGAG*C-UAUGA-GG    1

    
    U-AGAG*U-AUUGA-AU    1

    
    U-AGAG*U-GAUGA-UA    1

    
    U-CGAG*C-GAUGA-AG    1

    
    U-GAAC*G-GUGGA-AG    1

    
    U-GAAC*G-GUUGA-AG    1

    
    U-GAAG*C-AACGA-AG    1

    
    U-GAAG*C-AAUAA-AA    1

    
    U-GAAG*C-AAUGA-AA    1

    
    U-GAAG*C-AUUGA-AG    1

    
    U-GAAG*C-GAAGA-AG    1

    
    U-GAAG*C-GACGA-AG    1

    
    U-GAAG*C-GAUGA-AA    1

    
    U-GAAG*C-GAUGA-UA    1

    
    U-GAAG*C-GGUGA-AC    1

    
    U-GAAG*U-GUUGA-AG    1

    
    U-GAAU*G-GAUGA-AA    1

    
    U-GGAA*U-UAUUA-AG    1

    
    U-GGAA*U-UGUGA-AG    1

    
    U-GGAC*G-AAUGA-AA    1

    
    U-GGAC*G-AUUGA-AG    1

    
    U-GGAC*G-GAAGA-AC    1

    
    U-GGAC*G-GACGA-AG    1

    
    U-GGAC*G-GAGGA-AA    1

    
    U-GGAC*G-GAUAA-AG    1

    
    U-GGAC*G-GGCGA-AG    1

    
    U-GGAC*G-GGGGA-AG    1

    
    U-GGAC*G-GUGGA-AC    1

    
    U-GGAC*G-GUUGA-AC    1

    
    U-GGAC*G-UAUGA-AG    1

    
    U-GGAG*A-GACGA-AG    1

    
    U-GGAG*A-GUUGA-AG    1

    
    U-GGAG*C-AAUAA-AA    1

    
    U-GGAG*C-AAUGA-GA    1

    
    U-GGAG*C-AAUGA-GU    1

    
    U-GGAG*C-ACUGA-AA    1

    
    U-GGAG*C-ACUGA-AG    1

    
    U-GGAG*C-AGUAA-AG    1

    
    U-GGAG*C-AUAGA-GG    1

    
    U-GGAG*C-GAAAA-AA    1

    
    U-GGAG*C-GAAGA-CG    1

    
    U-GGAG*C-GACGA-AA    1

    
    U-GGAG*C-GACGA-AC    1

    
    U-GGAG*C-GACGA-AU    1

    
    U-GGAG*C-GAUGG-AG    1

    
    U-GGAG*C-GAUUA-AA    1

    
    U-GGAG*C-GCAGA-AA    1

    
    U-GGAG*C-GCCGA-AG    1

    
    U-GGAG*C-GCUGA-AU    1

    
    U-GGAG*C-GGGGA-AA    1

    
    U-GGAG*C-GGGGA-AG    1

    
    U-GGAG*C-GUAGA-GU    1

    
    U-GGAG*C-GUCGA-AG    1

    
    U-GGAG*C-GUGGA-AC    1

    
    U-GGAG*C-GUGGA-AG    1

    
    U-GGAG*C-GUUGA-GA    1

    
    U-GGAG*C-GUUGA-GG    1

    
    U-GGAG*C-GUUUA-AA    1

    
    U-GGAG*C-UAUGA-AC    1

    
    U-GGAG*C-UAUGA-GA    1

    
    U-GGAG*C-UAUGA-GG    1

    
    U-GGAG*C-UGAGA-GG    1

    
    U-GGAG*C-UGUGA-AC    1

    
    U-GGAG*U-AAUGA-AC    1

    
    U-GGAG*U-AUUGA-AA    1

    
    U-GGAG*U-GAUGA-AU    1

    
    U-GGAG*U-GGUGA-AU    1

    
    U-GGAU*C-GGUGA-AA    1

    
    U-GGAU*G-GAAGA-AG    1

    
    U-GGAU*G-GAGGA-AG    1

    
    U-GGAU*G-GGUGA-AG    1

    
    U-GGAU*G-GUUUA-AG    1

    
    U-GGCG*C-AUUGA-AG    1

    
    U-GGCG*C-GAUGA-AU    1

    
    U-GUAG*C-AAUGA-AG    1

    
    U-UAAG*C-AGUGA-UG    1

    
    U-UAAG*U-UAUGA-AG    1

    
    U-UGAG*C-AAUGA-UG    1

    
    U-UGAG*C-AUUGA-UG    1

    
    U-UGAG*C-GUUGA-AG    1

    
    U-UGAG*C-UAUGA-AG    1

    
    U-UGAG*U-GAUGA-AA    1

    
    U-UGAG*U-GAUGA-UG    1

    
    U-GGAG*C-AAUG--AA    1

    
    U-GGAG*C-GAA---AA    1

    
    A----G*C-GUUGA-AU    1

    
    Omitted sequenced and counts

    
    U-GGAG*C-NAUGA-AG    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

98.94 51.62 2 1

Kink-turn

2

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

98.52 69.05 1 0

Kink-turn

3

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

97.46 42.23 4 2

Kink-turn

4

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

47.22 -3.74 6 3

5

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

44.68 -9.44 4 2

Kink-turn

6

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

26.22 -16.06 6 3

Kink-turn

7

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

11.28 -19.92 4 4

Kink-turn

8

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

6.06 -30.47 7 5

Kink-turn

9

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

4.44 -39.64 5 4

Kink-turn

10

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

4.02 -23.17 6 4

11

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

3.03 -39.50 7 4

12

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

1.69 -44.06 7 5

Kink-turn

13

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

1.34 -31.25 5 4

tSH-tHS-tHW

14

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

1.20 -37.99 7 5

15

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.92 -55.42 7 5

8x6 Sarcin-Ricin with inserted A; G-bulge

16

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.63 -37.85 5 4

6x5 Sarcin-Ricin; G-bulge

17

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.63 -40.70 7 5

18

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.49 -56.56 9 6

19

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.49 -56.75 6 5

Kink-turn with embedded cWW pair

20

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.35 -55.72 9 5

Reverse turn

21

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.21 -41.50 6 5

22

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.21 -45.80 5 4

23

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.14 -45.18 7 5

24

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.14 -48.27 4 4

25

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.14 -50.93 7 4

26

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.14 -70.75 7 6

Kink-turn with non-sequential stacking

27

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.07 -56.31 4 2

28

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.07 -58.95 6 4

29

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.07 -64.28 7 5

tHW-tHW cross-strand stack

30

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.07 -72.22 4 3

Kink-turn from U4

31

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.07 -84.76 7 5

UAA/GAN with extra stack

32

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.07 -107.10 7 5

tSH-tHH-tHS

33

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.07 -113.64 8 6

34

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.07 -119.23 7 5

35

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.07 -123.56 4 3

Triple sheared

36

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.07 -136.11 4 3

AAA cross-strand stack

37

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.07 -206.12 3 3

Triple sheared

38

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -57.44 7 5

Kink-turn

39

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -64.03 9 6

40

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -66.47 8 6

41

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -76.26 7 7

42

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -76.28 5 4

43

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -76.47 8 6

44

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -77.44 7 5

45

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -78.23 10 7

46

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -79.24 5 4

Reverse kink-turn

47

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -80.85 6 5

48

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -87.09 5 4

Kink-turn

49

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -87.79 9 7

Kink-turn related

50

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -88.29 7 4

51

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -88.88 8 6

52

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -90.26 7 5

UAA/GAN related

53

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -90.71 7 5

Other IL

54

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -90.97 7 4

55

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -91.45 7 4

8x6 Sarcin-Ricin with bulged A; G-bulge

56

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -91.53 8 7

57

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -91.69 7 5

58

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -92.53 9 7

59

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -94.51 9 5

60

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -94.61 9 6

61

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -96.15 9 7

62

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -96.55 9 7

63

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -97.25 10 7

64

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -97.59 7 5

65

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -98.89 9 7

66

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -99.00 9 7

67

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -101.05 9 6

68

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -101.34 7 5

69

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -103.00 7 4

Double sheared; A in syn; two near cWW pairs

70

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -104.04 8 5

71

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -104.99 8 6

Kink-turn related

72

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -105.08 8 5

Triple sheared related

73

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -105.83 10 8

74

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -106.60 9 7

75

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -108.07 9 6

76

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -108.79 7 6

77

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -108.79 7 4

tSH-tSH-tHH-tHS

78

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -110.09 7 6

Vitamin B12 Aptamer

79

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -110.62 10 8

80

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -111.62 8 6

8x6 Sarcin-Ricin with inserted Y; G-bulge

81

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -111.99 8 6

82

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -112.84 8 5

Part of G-quadruplex

83

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -112.94 7 6

Sarcin-Ricin target in LSU H95; G-bulge

84

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -115.03 7 5

85

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -115.45 8 7

86

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -116.24 8 7

87

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -118.26 8 7

88

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -118.80 6 4

89

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -119.40 8 6

90

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -121.42 8 6

91

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -122.95 7 5

92

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -123.01 7 5

93

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -123.56 6 5

94

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -124.10 7 4

95

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -125.20 10 8

96

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -125.42 8 7

97

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -125.43 8 7

tSH-tHW

98

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -126.18 8 7

99

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -126.38 11 8

100

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -126.72 9 5

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

101

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -126.73 4 3

Kink-turn

102

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -127.78 5 4

UAA/GAN with extra cWW

103

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -128.39 10 6

104

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -128.41 9 7

10x8 Sarcin-Ricin; G-bulge

105

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -128.42 7 4

Other IL

106

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -129.41 8 7

107

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -130.30 9 9

108

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -130.35 6 5

7x6 Sarcin-Ricin; G-bulge

109

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -130.51 8 6

Kink-turn related

110

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -131.35 8 6

111

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -131.83 9 7

112

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -132.05 9 7

113

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -133.10 10 7

114

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -134.26 11 7

115

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -134.26 6 5

116

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -134.33 7 6

UAA/GAN with tHH

117

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -136.22 6 3

118

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -136.52 13 9

Pseudoknot

119

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -136.81 9 8

120

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -137.96 7 7

Kink-turn related

121

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -139.61 11 7

122

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -139.64 8 7

123

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -139.69 8 6

cWH basepair with bulged bases

124

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -139.99 9 7

Reverse kink-turn related

125

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -140.27 8 7

126

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -141.39 8 6

127

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -143.52 10 8

128

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -143.66 9 6

129

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -144.37 9 7

130

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -144.40 11 9

131

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -144.64 10 9

Kink-turn related

132

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -145.20 6 5

Triple sheared with non-canonical cWW

133

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -147.11 9 7

Kink-turn related

134

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -147.23 7 6

135

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -147.60 6 5

136

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -147.64 9 7

137

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -148.63 9 6

138

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -149.19 8 6

7x7 Sarcin-Ricin with intercalated A; G-bulge

139

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -149.95 7 5

140

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -152.17 9 6

141

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -152.27 8 7

142

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -152.55 9 6

Minor groove platform related

143

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -152.85 11 9

144

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -152.89 8 5

145

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -153.18 8 7

146

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -154.81 8 6

147

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -155.37 9 6

148

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -156.29 8 7

149

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -157.16 6 6

150

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -157.55 10 7

tWH-tWH-tHW-tHW

151

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -158.27 10 8

152

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -158.90 6 5

153

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -158.93 11 9

154

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -159.56 7 6

155

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -161.20 10 8

156

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -161.66 11 9

157

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -162.59 7 6

8x7 Sarcin-Ricin; G-bulge

158

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -163.59 9 8

159

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -163.89 11 9

160

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -165.12 8 6

Pseudoknot

161

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -167.35 10 8

tSH-tHW-tHH-tHS

162

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -168.04 8 7

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

163

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -169.98 10 8

164

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -170.06 10 8

165

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -170.16 11 9

Kink-turn

166

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -170.23 7 6

8x7 Sarcin-Ricin; G-bulge

167

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -171.12 6 5

tSH-tHW-tWH-tHS

168

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -171.74 10 8

169

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -171.80 8 6

170

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -172.97 11 11

171

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -175.29 6 5

180 degree turn

172

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -176.37 11 8

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

173

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -176.90 13 11

174

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -177.58 5 4

175

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -177.84 9 7

Reverse kink-turn related

176

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -178.39 8 6

177

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -179.42 11 8

178

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -179.96 7 5

179

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -180.44 6 4

tSH-tHW

180

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -181.03 7 5

tSH-tWH-tHS-cWW

181

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -182.42 9 6

Intercalated tWH

182

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -183.69 10 7

183

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -185.31 9 8

184

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -186.90 9 6

185

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -187.97 6 3

Quadruple sheared

186

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -189.12 8 5

187

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -190.29 7 5

188

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -191.02 10 7

189

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -191.47 10 9

190

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -193.65 7 5

191

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -194.59 8 5

cWH basepair and non-canonical AC

192

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -194.72 10 6

193

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -195.30 8 6

194

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -196.02 7 6

195

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -196.27 6 5

196

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -196.41 9 7

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

197

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -196.99 9 7

198

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -199.92 14 14

199

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -200.46 13 9

Pseudoknot

200

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -202.50 9 9

201

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -202.61 7 6

202

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -203.16 6 5

UAA/GAN

203

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -206.25 10 7

204

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -207.97 6 4

UAA/GAN

205

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -208.12 9 6

206

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -209.13 12 10

207

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -209.20 9 6

208

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -210.96 11 10

209

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -211.10 6 4

210

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -213.22 7 4

Triple non-canonical cWW pairs

211

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -213.91 7 6

212

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -214.62 6 5

213

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -215.20 7 5

Isolated non-canonical cWW pair

214

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -224.13 8 4

215

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -226.44 7 5

216

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -226.67 6 5

Double sheared with non-canonical cWW

217

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -227.19 14 12

218

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -227.43 11 11

219

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -228.12 10 7

220

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -228.87 12 9

221

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -229.03 5 4

5x5 Sarcin-Ricin with intercalated A; G-bulge

222

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -229.27 7 5

223

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -231.68 8 6

224

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -232.46 9 5

Decoding loop related

225

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -234.01 10 7

226

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -234.64 6 4

227

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -235.12 9 7

228

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -236.35 8 7

229

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -237.40 6 4

Double sheared

230

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -238.61 11 8

231

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -239.05 5 4

tSH-tWH-tHS

232

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -243.96 11 9

233

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -244.37 14 13

234

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -245.02 6 4

235

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -246.07 7 5

236

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -251.83 5 4

237

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -251.97 7 6

Receptor of 11-nt loop-receptor motif

238

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -252.70 7 5

239

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -257.00 9 5

240

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -261.19 7 4

241

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -261.81 7 6

Receptor of 11-nt loop-receptor motif

242

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -261.84 8 7

243

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -264.31 10 8

244

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -264.61 10 8

245

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -264.83 17 14

246

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -264.87 8 7

247

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -269.23 15 13

248

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -272.44 14 10

249

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -274.35 9 8

250

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -275.22 9 7

251

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -276.32 8 6

252

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -277.60 6 4

253

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -278.57 8 8

254

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -280.21 10 7

255

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -281.22 6 5

256

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -285.46 11 8

257

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -289.36 11 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

258

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -289.46 8 7

259

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -290.60 8 6

260

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -293.61 6 6

261

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -297.35 11 9

262

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -298.62 8 8

Bacterial 5S Loop E

263

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -298.86 5 4

UAA/GAN variation

264

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -299.21 14 12

265

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -299.25 8 6

266

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -301.43 6 5

267

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -303.53 9 8

268

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -304.46 6 5

269

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -305.39 8 5

C-loop with bulged stacked A's

270

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -308.56 5 4

271

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -314.70 7 5

Tandem non-canonical cWW pairs

272

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -318.13 9 7

273

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -319.31 18 15

274

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -319.50 7 5

275

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -325.37 12 9

276

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -325.70 10 10

Pseudoknot

277

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -330.65 7 6

278

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -330.91 7 6

279

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -331.13 6 5

tSH-tHW

280

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -331.41 10 8

281

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -333.05 9 7

Major groove intercalation

282

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -334.01 11 8

Minor groove platform

283

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -334.38 9 6

284

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -334.59 9 7

285

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -334.90 11 9

286

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -335.71 4 4

UAA/GAN related

287

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -339.48 10 7

288

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -339.94 13 11

289

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -341.03 11 10

290

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -344.41 16 16

291

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -345.16 9 7

292

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -345.95 5 4

Tandem non-canonical cWW pairs

293

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -348.75 7 5

294

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -354.05 8 7

295

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -355.09 6 6

296

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -356.60 7 6

SSU/LSU pseudoknot

297

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -357.07 7 6

298

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -357.77 9 7

299

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -359.82 6 5

300

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -363.34 7 4

301

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -363.43 8 6

302

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -369.30 8 5

303

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -370.79 9 7

304

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -372.51 8 7

Multiple bulged bases

305

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -373.89 6 5

Double sheared

306

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -378.35 11 9

307

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -381.41 9 7

308

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -388.64 17 16

309

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -388.91 7 5

310

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -389.63 17 16

311

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -391.08 11 9

312

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -392.85 6 5

313

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -393.62 8 7

Major groove minor groove platform with intercalation; mini C-loop

314

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -394.52 6 5

315

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -395.89 9 7

Major groove intercalation

316

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -397.78 7 7

317

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -398.84 18 17

318

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -398.90 7 5

319

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -399.03 9 7

320

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -404.84 8 5

321

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -409.74 7 6

322

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -409.77 6 5

323

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -411.23 7 6

324

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -411.38 8 6

Minor groove platform

325

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -418.52 21 19

326

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -426.20 8 6

327

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -435.35 8 5

328

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -442.57 15 13

329

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -444.51 10 8

Other IL

330

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -445.68 7 6

331

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -449.50 9 7

Symmetric double minor groove platform

332

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -456.30 7 6

Isolated non-canonical cWW pair

333

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -472.54 7 6

334

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -472.54 8 7

335

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -476.58 8 6

336

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -482.20 8 6

Isolated non-canonical cWW pair

337

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -487.57 8 7

338

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -488.59 10 7

8-nt loop receptor

339

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -495.21 8 7

340

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -497.74 8 7

Tandem non-canonical cWW pairs

341

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -510.69 8 6

Multiple bulged bases

342

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -515.15 7 7

343

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -516.32 7 5

344

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -516.40 15 12

Kink-turn related

345

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -520.97 8 7

346

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -526.98 8 7

347

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -547.34 7 6

348

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -560.46 7 6

Isolated non-canonical cWW pair

349

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -561.51 7 6

Isolated non-canonical cWW contact

350

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -574.55 7 6

Isolated tHS basepair with bulges

351

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -582.36 7 6

Isolated tWW turn

352

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -588.41 7 6

Decoding loop related

353

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -611.80 10 8

354

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -614.76 8 6

Left turn

355

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -618.00 8 6

Isolated cWS basepair

356

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -618.24 7 7

Isolated cWH basepair

357

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -621.10 9 8

Bulged stacked bases

358

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -637.66 7 6

Isolated non-canonical cWW pair

359

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -672.96 7 7

360

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -674.34 9 7

361

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -675.32 10 8

362

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -685.45 8 7

Multiple bulged bases

363

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -685.54 8 7

364

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -691.84 8 6

Stack and bulge

365

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -709.70 8 7

366

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -715.61 8 7

Intercalated cWS

367

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -719.48 7 7

Major groove intercalation

368

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -721.09 9 7

Minor groove platform

369

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -723.80 7 7

Major groove platform with intercalated tWH

370

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -747.61 8 7

371

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -758.51 8 7

372

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -759.65 8 6

Major groove minor groove platform; mini C-loop

373

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -767.61 9 8

374

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -770.44 8 7

Minor groove platform

375

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -774.75 8 7

376

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -780.87 9 8

377

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -795.60 8 7

Minor groove platform, major groove intercalation

378

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -802.39 9 7

379

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -805.97 8 8

Major groove platform

380

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -815.97 7 7

Major groove platform with intercalation

381

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -825.37 8 7

Major groove platform

382

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -836.06 9 9

383

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -855.73 8 8

Minor groove platform

384

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -863.19 8 8

Single stack bend

385

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -865.75 8 6

386

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -888.93 8 8

Isolated non-canonical cWW pair

387

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -1046.42 9 8

Single stack bend

388

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -1050.28 9 8

389

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -1064.87 8 8

Single bulged U

390

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -1078.02 8 8

Single bulged G

391

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -1090.88 8 8

Single bulged A

392

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -1110.59 9 9

Single bulged C

393

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4313.19 12 10

394

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4356.44 13 11

395

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4489.86 13 13

396

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4672.14 9 8

397

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5130.25 11 9

Part of G-quadruplex

398

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5261.94 11 8

399

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5320.47 8 7

400

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5321.35 8 7

401

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8293.02 10 8

402

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8707.02 7 6

C-loop

403

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 8 7

C-loop

404

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

405

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 8 8

Multiple bulged bases

406

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 7 7

Major groove platform; stack outside cWW

407

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 8

408

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

409

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 8 7

Multiple bulged bases

410

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 8 6

411

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 9 7

Coloring options: