RNA 3D Hub

JAR3D Query RF03064-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 5 Internal loop

Column numbers: 58-64, 121-125 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GAGU-AG*C-AAA  316

    
    AAGU-AG*C-AAA  254

    
    GAGU-AG*C-CAA  125

    
    UAGU-AG*C-GAG  123

    
    GAGU-AG*U-GAA   82

    
    GAGU-AG*C-GAA   80

    
    AAGU-AG*C-GAA   60

    
    UAGU-AG*C-AAG   60

    
    UAGU-AG*U-GAG   32

    
    AAGU-AG*U-GAA   25

    
    UAGU-AG*C-AAA   25

    
    AAGU-AG*C-CAA   24

    
    AAGU-AG*U-AAA   16

    
    GAGU-AG*U-CAA   11

    
    UAGU-AG*C-GAA   11

    
    UAUU-AG*C-GAG   11

    
    GAGU-AA*U-GAA   10

    
    GAGU-AG*U-AAA    9

    
    GAUU-AG*C-GAA    9

    
    AAGU-AG*CAAAA    7

    
    AAGU-AA*U-GAA    7

    
    CGGU-AG*C-GAA    6

    
    GAUU-AG*U-GAA    6

    
    CAGU-AG*C-GAG    5

    
    CGGU-AG*C-AAA    5

    
    UAGU-AG*C-CAA    5

    
    GAGU-AG*CAAAA    4

    
    AAGU-AC*G-GAA    3

    
    AAUU-AG*C-GAA    3

    
    AAUU-AG*U-GAA    3

    
    CAGU-AG*C-CAA    3

    
    GAAU-AG*C-AAA    3

    
    GAAU-AG*U-GAA    3

    
    GAGU-AC*U-GAA    3

    
    UAGU-AG*U-GAA    3

    
    UGGU-AG*C-AAA    3

    
    UGGU-AG*C-GAA    3

    
    AAGU-AG*C-UAA    2

    
    AAGU-AG*U-CAA    2

    
    AAUU-AG*C-AAA    2

    
    GAGU-AA*C-GAA    2

    
    GUGU-AG*C-CAA    2

    
    UACU-AG*C-GAG    2

    
    UAGU-AG*U-CAA    2

    
    UUGU-AG*C-GAA    2

    
    AAGU-AG*CGAAA    1

    
    AAGU-AG*UAGAA    1

    
    AAGU-AG*UGAAA    1

    
    AAGUUAG*C-AAA    1

    
    GAGU-AG*UGAAA    1

    
    GAGU-AG*UUGAA    1

    
    GAGUUAG*C-AAA    1

    
    UAGUUAG*C-GAA    1

    
    AAAU-AG*C-GAA    1

    
    AAAU-AG*U-AAA    1

    
    AAAU-AG*U-GAA    1

    
    AAGU-AA*U-AAA    1

    
    AAGU-AG*A-AAA    1

    
    AAGU-AG*C-AAG    1

    
    AAGU-AG*C-GAG    1

    
    CAGU-AG*U-GAG    1

    
    CGGU-AC*G-GAA    1

    
    GAAU-AG*C-CAA    1

    
    GAAU-AG*C-GAA    1

    
    GAAU-AG*C-GGA    1

    
    GAGC-AG*U-GAA    1

    
    GAGG-AG*C-CAA    1

    
    GAGU-AA*C-AAA    1

    
    GAGU-AA*U-AAA    1

    
    GAGU-AC*G-GAA    1

    
    GAGU-AG*C-CGA    1

    
    GAGU-AG*C-GGA    1

    
    GAGU-AG*C-UAA    1

    
    GAGU-CG*U-CAA    1

    
    GAUC-AG*U-GAA    1

    
    GGGU-AG*C-AAA    1

    
    UAAU-AG*U-GAA    1

    
    UAGU-AA*U-GAA    1

    
    UAGU-AC*G-GAA    1

    
    UAGU-AG*C-GGG    1

    
    UAGU-AG*C-UAG    1

    
    UAGU-AG*U-AAG    1

    
    UAGU-GG*C-GAG    1

    
    UAUU-AG*U-GAG    1

    
    UGGU-AG*U-GAA    1

    
    AA-U-AG*C-AAA    1

    
    AAGU-AG*C--AA    1

    
    GAGU-AG*C-A-A    1

    
    --GU-AG*C-AAA    1

    
    Omitted sequenced and counts

    
    GAGU-AG*C-MAA    1

    
    GAGU-AG*U-ANA    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

49.79 -9.74 5 3

2

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

48.17 -8.25 4 2

3

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

16.85 -22.22 6 4

4

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

14.32 -9.16 8 4

5

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

8.60 -22.74 4 2

6x5 Sarcin-Ricin; G-bulge

6

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

6.98 -20.92 7 3

180 degree turn

7

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

3.39 -25.24 4 2

8

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

2.89 -32.27 5 3

9

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

2.19 -26.54 6 4

Pseudoknot

10

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

2.05 -18.10 5 3

11

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

1.90 -22.41 4 3

tSH-tHW

12

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

1.83 -24.80 6 3

13

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

1.69 -27.78 7 4

14

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

1.48 -35.51 6 3

15

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.99 -41.48 5 3

Kink-turn from U4

16

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.99 -43.36 4 3

17

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.99 -93.84 4 3

7x6 Sarcin-Ricin; G-bulge

18

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.78 -48.63 5 3

Other IL

19

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.42 -37.08 8 4

Reverse kink-turn

20

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.42 -48.82 5 4

21

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.28 -52.06 6 4

Kink-turn

22

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.14 -36.04 6 3

23

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.14 -56.44 8 5

24

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.14 -61.53 4 3

25

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.14 -64.55 6 3

26

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.14 -76.42 5 2

27

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.07 -47.95 7 5

28

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.07 -59.24 6 3

29

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.07 -59.79 4 3

tSH-tHH-tHS

30

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.07 -59.99 6 4

31

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.07 -66.02 6 4

32

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.07 -68.52 5 4

Kink-turn with embedded cWW pair

33

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.07 -70.45 6 3

Double sheared

34

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.07 -71.20 7 3

35

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.07 -84.34 7 4

Triple sheared related

36

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.07 -88.60 4 3

37

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.07 -89.37 4 2

UAA/GAN related

38

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.07 -123.23 6 3

Minor groove platform

39

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.07 -130.16 3 2

Double sheared

40

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -36.34 7 4

41

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -36.39 5 3

42

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -39.87 6 5

Part of G-quadruplex

43

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -45.79 8 5

Kink-turn related

44

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -46.58 6 4

45

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -47.27 5 4

tHW-tHW cross-strand stack

46

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -49.37 7 4

47

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -49.66 7 4

48

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -52.97 5 4

49

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -53.74 6 4

50

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -56.48 6 5

Kink-turn

51

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -57.48 5 4

52

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -57.67 10 6

53

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -58.38 8 4

Sarcin-Ricin target in LSU H95; G-bulge

54

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -59.20 8 5

Reverse turn

55

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -60.55 7 5

56

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -60.72 8 5

tSH-tHW

57

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -62.42 6 4

UAA/GAN with extra stack

58

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -62.94 6 4

UAA/GAN related

59

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -64.56 9 5

60

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -64.59 6 4

61

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -65.45 6 4

62

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -67.55 5 4

63

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -67.96 7 4

8x6 Sarcin-Ricin with inserted A; G-bulge

64

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -68.12 8 5

65

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -68.34 6 3

66

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -69.32 6 4

67

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -71.45 7 4

68

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -71.79 6 5

69

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -72.08 5 4

70

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -72.35 7 4

71

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -72.59 5 5

72

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -73.55 8 5

73

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -74.02 8 5

74

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -75.51 6 5

75

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -77.79 5 2

UAA/GAN variation

76

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -78.88 6 3

77

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -79.49 7 5

Kink-turn

78

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -81.07 8 4

79

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -81.20 5 4

8x6 Sarcin-Ricin with bulged A; G-bulge

80

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -82.13 6 3

81

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -82.17 7 5

Kink-turn

82

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -83.73 7 4

83

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -84.39 6 3

84

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -84.94 8 5

Kink-turn related

85

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -85.01 6 4

Decoding loop related

86

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -85.49 7 4

87

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -86.25 7 4

88

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -86.59 6 3

Isolated non-canonical cWW pair

89

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -87.71 6 5

90

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -87.80 8 5

91

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -88.44 6 4

8x6 Sarcin-Ricin with inserted Y; G-bulge

92

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -88.53 7 5

93

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -88.77 7 5

94

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -89.51 7 6

95

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -89.71 6 4

cWH basepair and non-canonical AC

96

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -90.35 5 4

97

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -92.04 7 4

98

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -92.16 8 5

99

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -93.99 7 4

100

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -94.74 4 3

AAA cross-strand stack

101

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -94.80 10 7

102

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -94.96 6 5

103

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -95.09 9 7

104

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -95.29 6 4

105

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -95.31 5 4

Kink-turn

106

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -96.05 7 4

Receptor of 11-nt loop-receptor motif

107

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -96.85 7 4

108

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -97.55 7 4

109

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -97.62 6 3

110

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -97.83 6 4

111

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -97.89 6 3

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

112

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -98.10 6 3

C-loop with bulged stacked A's

113

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -98.16 10 6

114

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -98.48 8 4

115

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -98.49 5 3

tSH-tHW

116

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -98.53 6 3

117

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -100.61 4 3

118

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -103.09 10 7

119

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -104.46 7 5

Kink-turn

120

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -104.55 8 6

121

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -104.65 9 6

122

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -104.95 7 4

123

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -105.72 5 3

124

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -105.99 9 6

125

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -106.09 8 6

126

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -107.64 7 6

127

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -107.74 5 2

128

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -107.93 8 6

129

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -108.17 6 4

130

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -108.28 5 3

131

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -108.94 7 4

132

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -109.13 7 3

133

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -109.17 8 5

134

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -109.95 6 4

135

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -110.39 8 6

136

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -111.36 5 4

137

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -111.70 6 4

Double sheared; A in syn; two near cWW pairs

138

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -112.47 6 4

139

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -112.69 7 5

cWH basepair with bulged bases

140

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -113.51 6 5

tSH-tHS-tHW

141

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -113.58 6 4

UAA/GAN with tHH

142

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -116.22 5 3

UAA/GAN

143

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -116.58 8 5

Kink-turn related

144

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -116.59 7 6

145

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -116.92 8 6

146

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -117.03 6 5

Intercalated tWH

147

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -117.25 7 4

Receptor of 11-nt loop-receptor motif

148

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -118.42 5 4.5

Kink-turn related

149

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -118.82 6 6

Kink-turn

150

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -119.64 6 3

151

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -119.99 9 6

Vitamin B12 Aptamer

152

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -120.08 5 4

tSH-tSH-tHH-tHS

153

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -120.56 8 6

154

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -121.81 5 4

7x7 Sarcin-Ricin with intercalated A; G-bulge

155

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -122.79 6 4

156

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -123.43 8 7

157

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -124.48 5 4

158

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -126.66 7 5

159

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -128.04 8 4

160

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -128.38 8 5

Kink-turn

161

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -130.88 8 7

162

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -131.57 3 2

163

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -131.60 7 4

164

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -132.33 6 3

165

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -133.74 8 6

166

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -134.98 5 3

Tandem non-canonical cWW pairs

167

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -135.84 5 3

UAA/GAN

168

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -135.87 6 3

169

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -136.44 8 7

Reverse kink-turn related

170

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -137.94 7 4

Kink-turn

171

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -138.83 6 5

172

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -138.93 4 3

173

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -140.24 5 4

UAA/GAN with extra cWW

174

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -140.43 7 5

Major groove intercalation

175

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -141.55 5 3

Triple sheared

176

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -141.72 5 3

177

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -141.78 7 3

178

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -142.07 9 6

179

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -142.30 6 3

180

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -142.38 8 7

181

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -142.63 9 6

Kink-turn

182

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -144.66 8 5

183

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -145.00 8 4

Tandem non-canonical cWW pairs

184

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -145.24 8 6

Other IL

185

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -146.23 7 4

186

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -146.49 7 4

187

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -146.59 5 4

188

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -147.01 8 5

8x7 Sarcin-Ricin; G-bulge

189

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -148.54 9 6

190

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -149.26 8 6

191

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -149.74 7 4

192

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -150.20 10 8

193

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -151.19 12 9

194

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -151.23 8 6

195

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -151.78 11 7

196

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -152.21 6 3

197

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -152.93 9 6

tWH-tWH-tHW-tHW

198

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -153.10 9 7

199

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -153.64 10 8

200

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -154.33 9 8

201

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -155.44 7 4

Major groove intercalation

202

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -156.80 9 8

203

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -158.09 8 6

Kink-turn with non-sequential stacking

204

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -158.31 11 8

205

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -158.51 6 5

8x7 Sarcin-Ricin; G-bulge

206

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -158.62 10 9

207

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -159.10 3 2

tSH-tWH-tHS

208

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -159.14 9 8

209

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -159.93 8 7

210

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -160.27 8 6

211

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -161.06 9 7

212

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -161.23 9 7

tSH-tHW-tHH-tHS

213

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -161.48 7 4

Major groove minor groove platform with intercalation; mini C-loop

214

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -163.32 7 4

215

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -164.55 5 3

216

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -166.70 10 6

217

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -166.76 5 3

218

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -167.32 9 6

219

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -167.80 8 6

220

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -168.37 9 8

221

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -170.32 6 3

222

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -171.90 7 5

223

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -172.18 9 8

224

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -172.80 5 4

tSH-tWH-tHS-cWW

225

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -175.51 8 7

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

226

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -176.22 8 6

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

227

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -176.31 7 6

Kink-turn related

228

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -177.57 6 5

229

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -179.94 7 5

230

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -181.19 5 3

Double sheared with non-canonical cWW

231

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -181.57 8 6

Minor groove platform

232

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -182.45 6 5

tSH-tHW-tWH-tHS

233

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -182.72 10 8

234

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -184.01 9 8

235

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -184.30 6 4

236

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -184.82 7 6

Triple sheared with non-canonical cWW

237

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -184.99 5 3

238

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -185.02 3 2

5x5 Sarcin-Ricin with intercalated A; G-bulge

239

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -185.96 9 5

Multiple bulged bases

240

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -186.61 10 8

10x8 Sarcin-Ricin; G-bulge

241

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -186.93 8 5

Other IL

242

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -189.48 5 3

Triple non-canonical cWW pairs

243

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -189.62 10 9

244

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -190.12 7 4

245

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -191.08 7 4

8-nt loop receptor

246

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -191.13 6 3

247

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -191.42 7 5

248

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -191.64 10 6

249

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -192.89 14 10

250

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -192.93 9 6

251

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -194.25 12 9

252

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -194.39 9 8

253

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -195.45 5 4

254

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -195.70 9 6

255

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -200.08 10 7

256

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -203.06 9 7

257

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -203.59 9 7

258

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -203.78 5 3

259

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -204.41 6 5

260

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -206.16 10 9

261

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -206.50 10 8

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

262

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -206.83 14 11

Kink-turn related

263

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -207.38 7 4

Quadruple sheared

264

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -207.63 10 7

265

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -207.80 13 10

Pseudoknot

266

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -209.14 5 3

267

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -209.82 9 8

268

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -210.89 13 9.5

269

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -214.24 12 9

270

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -215.11 6 3

271

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -215.70 6 4

272

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -217.99 8 4

Multiple bulged bases

273

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -218.28 11 10

274

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -219.38 4 3

Triple sheared

275

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -220.47 4 2

276

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -220.48 13 11

277

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -220.72 9 6

Kink-turn

278

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -220.88 6 4

Tandem non-canonical cWW pairs

279

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -221.58 13 9.5

280

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -223.60 8 7

281

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -223.92 10 9

282

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -224.09 9 6

283

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -225.45 13 9

284

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -227.34 11 9

285

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -229.25 8 6

286

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -229.68 10 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

287

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -230.05 10 9

288

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -231.02 7 5

SSU/LSU pseudoknot

289

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -231.19 7 4

Bulged stacked bases

290

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -231.73 9 7

291

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -232.56 13 12

292

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -233.47 14 13

293

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -238.89 4 3

294

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -240.71 10 6

295

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -240.88 5 3

Isolated non-canonical cWW pair

296

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -242.11 5 3

Stack and bulge

297

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -242.17 9 7

298

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -242.57 6 4

Multiple bulged bases

299

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -244.32 10 8

300

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -245.91 7 5

301

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -247.56 5 4

Isolated non-canonical cWW pair

302

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -247.78 10 9

303

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -248.80 15 12

304

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -249.40 6 4

Isolated non-canonical cWW pair

305

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -251.66 6 4

Left turn

306

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -252.76 12 11

307

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -255.15 6 4

308

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -258.02 4 3

Decoding loop related

309

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -258.45 8 5

310

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -258.73 7 4

311

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -258.82 9 7

312

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -259.36 16 13

Kink-turn

313

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -265.21 9 7

Minor groove platform related

314

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -270.11 13 10

Pseudoknot

315

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -270.65 7 4

Minor groove platform

316

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -272.02 6 3

Multiple bulged bases

317

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -272.52 7 4

318

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -274.06 11 10

319

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -275.36 13 11

320

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -276.44 5 4

321

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -277.56 5 3

Isolated tWW turn

322

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -279.96 12 11

323

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -288.62 6 4

324

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -291.29 5 4

325

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -291.46 8 5

326

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -293.45 5 4

Isolated cWS basepair

327

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -295.92 6 4

Isolated tHS basepair with bulges

328

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -297.40 12 11

329

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -297.64 8 6

330

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -302.03 7 5

331

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -304.06 5 4

Major groove intercalation

332

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -307.32 11 10

333

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -308.06 14 11

Pseudoknot

334

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -308.81 5 4

Intercalated cWS

335

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -308.98 5 3

Isolated cWH basepair

336

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -311.58 5 4

Isolated non-canonical cWW contact

337

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -312.97 9 8

Bacterial 5S Loop E

338

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -314.58 15 14

339

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -314.91 6 5

C-loop

340

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -321.35 7 5

341

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -323.05 4 3

Isolated non-canonical cWW pair

342

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -326.67 7 4

343

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -327.19 12 10

344

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -327.22 6 4

345

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -329.36 17 13

346

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -329.52 5 4

Minor groove platform

347

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -329.74 8 4

348

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -331.60 13 11

349

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -331.70 15 14

350

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -332.72 10 9

351

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -333.42 7 4

352

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -341.58 10 9

353

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -344.47 5 4

Major groove minor groove platform; mini C-loop

354

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -346.87 7 5

Major groove platform

355

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -346.93 6 4

356

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -349.70 5 4

Minor groove platform, major groove intercalation

357

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -352.71 5 4

358

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -355.38 16 15

359

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -356.56 6 4

Major groove platform with intercalated tWH

360

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -366.10 6 4

361

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -385.18 6 4

Major groove platform

362

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -391.94 6 4

Major groove platform with intercalation

363

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -392.07 6 4

Major groove platform; stack outside cWW

364

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -397.17 6 4

Single stack bend

365

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -401.51 7 5

366

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -404.80 7 6

367

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -411.72 9 8

368

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -415.39 19 17

369

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -415.65 17 16

370

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -428.16 12 11

371

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -429.99 9 7

372

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -431.66 5 5

Multiple bulged bases

373

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -438.01 20 17

374

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -440.97 9 7

Reverse kink-turn related

375

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -444.53 6 5

Isolated non-canonical cWW pair

376

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -446.95 5 5

Minor groove platform

377

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -453.62 20 19

378

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -458.54 13 10

379

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -462.65 8 7

380

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -463.36 19 19

381

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -468.93 7 5

382

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -475.66 6 5

Single bulged G

383

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -479.82 17 16

384

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -481.03 16 14

Kink-turn related

385

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -481.12 12 11

386

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -483.39 6 5

Single bulged U

387

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -493.02 5 5

Single stack bend

388

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -503.05 7 4

Symmetric double minor groove platform

389

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -520.64 16 15

390

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -530.79 7 6

391

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -532.23 7 5

392

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -532.31 5 5

Single bulged A

393

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -538.02 15 14

394

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -556.77 6 6

Single bulged C

395

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -558.47 8 6

396

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4537.39 17 17

397

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4723.15 13 12

398

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -4975.91 10 8

399

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5151.46 10 8

400

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5319.05 15 12

401

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5336.77 11 9

402

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5346.27 10 9

403

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5347.72 10 9

404

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5356.48 15 13

Part of G-quadruplex

405

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6121.29 8 5

406

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6841.26 7 6

Kink-turn

407

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7339.87 8 8

408

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 7 5

C-loop

409

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 17 16

410

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 18 17

411

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 6 4

Coloring options: