RNA 3D Hub

JAR3D Query RF03064-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 6 Internal loop

Column numbers: 66-69, 115-119 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    G-UA*U---C   43

    
    A-UC*G---U   28

    
    A-UA*U---U   25

    
    U--A*U---A   23

    
    A-UU*A---U   19

    
    U-UA*U---A   15

    
    A-UU*AA--U   13

    
    U-UA*UU--U   12

    
    U-UU*AA--A   12

    
    G-UA*AU--C   11

    
    U--A*U---U   11

    
    A-UU*G---U    9

    
    U-UG*C---A    9

    
    G--A*U---G    9

    
    C-UU*AA--G    8

    
    G-UC*G---C    8

    
    A-UA*AU--U    7

    
    A-CA*U---U    7

    
    A-UC*UU--U    6

    
    C-UA*U---G    6

    
    C-UC*G---G    6

    
    G--A*GU--G    6

    
    C-UG*C---G    5

    
    U--U*A---A    5

    
    GAUA*UA--C    4

    
    A-GU*GC--U    4

    
    A-UU*AG--U    4

    
    C-UU*GA--G    4

    
    G-UG*AC--C    4

    
    U-UU*AG--A    4

    
    A-UA*A---U    4

    
    C-UA*A---G    4

    
    U-UG*U---G    4

    
    U-UU*UAAAA    3

    
    G--A*UAGAC    3

    
    GUUG*AA--C    3

    
    A-UA*UA--U    3

    
    A-UA*UU--U    3

    
    U-UG*AC--A    3

    
    U-UU*UU--A    3

    
    A-UG*C---U    3

    
    A-UU*U---U    3

    
    G-UG*U---C    3

    
    G-UU*U---C    3

    
    U-GU*A---A    3

    
    U-UA*U---G    3

    
    U-UG*G---G    3

    
    C--A*U---U    3

    
    GAUU*AU--C    2

    
    A-UA*GU--U    2

    
    U-GU*AU--A    2

    
    U-UG*CU--G    2

    
    U-UG*GU--G    2

    
    U-UG*UU--U    2

    
    U-UU*AG--G    2

    
    U-UU*AU--U    2

    
    A-GU*A---U    2

    
    A-UC*G---G    2

    
    C--A*AU--G    2

    
    C-GG*C---G    2

    
    G-AU*A---C    2

    
    G-UA*U---U    2

    
    G-UC*G---U    2

    
    U-UA*A---A    2

    
    U-UG*U---A    2

    
    U-UU*A---G    2

    
    A--A*A---U    2

    
    A--A*U---A    2

    
    C--A*A---G    2

    
    C--A*C---G    2

    
    U-U-*U---U    2

    
    AGUA*UCGCU    1

    
    GUUG*GGAAC    1

    
    UAGA*UAUCA    1

    
    UCGA*UAAGG    1

    
    A-UC*UUGAU    1

    
    A-UU*UCAAU    1

    
    C-UG*UAACG    1

    
    C-UU*UCUAG    1

    
    C-UU*UGAAG    1

    
    U-GA*AAAAU    1

    
    U-GU*UCAUA    1

    
    U-GU*UCAUG    1

    
    UUUA*U-UUA    1

    
    ACGC*AC--U    1

    
    C-AA*-CACG    1

    
    CAGU*GC--G    1

    
    CAUG*UA--A    1

    
    CUCA*UG--G    1

    
    GAGA*UU--A    1

    
    GGUU*--GAC    1

    
    GUUG*AA--U    1

    
    UGUA*AU--A    1

    
    UGUU*AC--A    1

    
    A-AU*AU--U    1

    
    A-CG*AC--U    1

    
    A-GA*UC--U    1

    
    A-UC*GA--U    1

    
    A-UU*--AAU    1

    
    A-UU*AU--U    1

    
    ACUA*GA---    1

    
    C-AA*AU--G    1

    
    C-UA*UU--G    1

    
    C-UG*AC--G    1

    
    C-UU*AA--U    1

    
    C-UU*AG--G    1

    
    G-UG*UU--C    1

    
    G-UU*GA--U    1

    
    U-CU*UU--A    1

    
    U-GA*UU--A    1

    
    U-UA*AC--A    1

    
    U-UA*GC--A    1

    
    U-UA*GU--A    1

    
    U-UA*UA--U    1

    
    U-UA*UC--U    1

    
    U-UG*AA--A    1

    
    U-UG*CU--A    1

    
    U-UU*AA--G    1

    
    U-UU*AA--U    1

    
    UAGA*U---A    1

    
    A--A*AU--U    1

    
    A--A*UU--U    1

    
    A--C*AU--A    1

    
    A-AA*U---U    1

    
    A-GC*U---U    1

    
    A-UC*GG---    1

    
    A-UG*U---U    1

    
    A-UU*A---C    1

    
    C--U*AG--G    1

    
    C-AA*-U--G    1

    
    C-UA*U---A    1

    
    C-UA*U---U    1

    
    C-UA*UU---    1

    
    G--U*AC--C    1

    
    G-AA*U---C    1

    
    G-CA*U---C    1

    
    G-CC*G---U    1

    
    G-GU*A---C    1

    
    G-UA*---UC    1

    
    G-UA*C---C    1

    
    G-UA*C---G    1

    
    G-UA*U---A    1

    
    G-UC*G---G    1

    
    G-UG*C---U    1

    
    G-UG*U---G    1

    
    G-UU*A---C    1

    
    G-UU*A---U    1

    
    U--A*AA--A    1

    
    U--A*GU--A    1

    
    U--U*AG--G    1

    
    U-AC*U---A    1

    
    U-AG*G---G    1

    
    U-AG*U---G    1

    
    U-CG*-G--A    1

    
    U-CG*-U--A    1

    
    U-CG*U---A    1

    
    U-GA*U---A    1

    
    U-U-*CG--G    1

    
    U-UA*-U--A    1

    
    U-UA*G---A    1

    
    U-UA*U---U    1

    
    U-UC*G---G    1

    
    U-UG*C---G    1

    
    --UA*UU---    1

    
    A--A*U---U    1

    
    A--U*G---U    1

    
    C--C*A---G    1

    
    C--G*A---G    1

    
    C-U-*A---G    1

    
    G--A*A---U    1

    
    G--U*A---U    1

    
    U--A*-U--A    1

    
    U--A*A---A    1

    
    U--A*U---G    1

    
    U--G*U---A    1

    
    Omitted sequenced and counts

    
    U--A*----A  115

    
    U---*----G   91

    
    U-UA*----G   55

    
    A---*----U   37

    
    ----*-----   34

    
    U--A*----G   33

    
    U-UC*----G   32

    
    --AA*-----   30

    
    U-U-*----A   28

    
    G--A*----G   22

    
    C--A*----G   19

    
    U-U-*----G   19

    
    C-UU*----G   18

    
    U---*----A   18

    
    G--A*----C   17

    
    U-UU*----G   13

    
    C-U-*----G   13

    
    U--G*----A   13

    
    C---*----G   13

    
    U-AA*----G   10

    
    A--A*----U    9

    
    G---*----G    8

    
    AAUU*----U    7

    
    U-UU*----A    7

    
    U--U*----A    7

    
    U---*----U    7

    
    A-UA*----U    6

    
    A--C*----U    6

    
    G--U*----C    6

    
    C-AA*----G    5

    
    C-CA*----G    5

    
    U-UA*----A    5

    
    A-G-*----U    5

    
    G--A*----U    5

    
    G--A*-G---    5

    
    G---*----C    5

    
    A-UU*----U    4

    
    C-UA*----G    4

    
    C-UG*----G    4

    
    G---*AC--C    4

    
    G-UA*----U    4

    
    U-UA*----U    4

    
    A-U-*----U    4

    
    G-U-*----C    4

    
    U-U-*----U    4

    
    UUUA*----A    3

    
    A-UC*----U    3

    
    C---*AG--G    3

    
    C-UC*----G    3

    
    U---*AG--G    3

    
    --AA*A----    3

    
    C--A*----C    3

    
    CGCA*----G    2

    
    UAUA*----G    2

    
    UCUA*----A    2

    
    UUUU*----A    2

    
    A-UG*----U    2

    
    C---*AA--G    2

    
    C-GA*----G    2

    
    C-UU*----A    2

    
    CAU-*----G    2

    
    G-UC*----G    2

    
    U---*AG--A    2

    
    U---*AU--A    2

    
    U---*GG--A    2

    
    --UA*G----    2

    
    A--U*----U    2

    
    A-U-*----G    2

    
    G--A*----A    2

    
    U-A-*----G    2

    
    A---*----C    2

    
    G---*----U    2

    
    AAUG*----U    1

    
    AGUA*----U    1

    
    CGGC*----G    1

    
    CUUA*----G    1

    
    GAUA*----C    1

    
    GGUU*----C    1

    
    U---*GUU-A    1

    
    UACA*----A    1

    
    UAUU*----A    1

    
    UUUA*----G    1

    
    UUUA*----U    1

    
    A---*--AAU    1

    
    A---*AU--U    1

    
    A---*GC--U    1

    
    A-AA*----U    1

    
    A-GA*----U    1

    
    A-UU*----A    1

    
    A-UU*----G    1

    
    C---*UU--G    1

    
    C-AU*----G    1

    
    C-GC*----G    1

    
    C-GG*----G    1

    
    C-UA*A----    1

    
    CGG-*----G    1

    
    G---*GC--C    1

    
    G-UA*----G    1

    
    GGU-*----C    1

    
    U-CA*----G    1

    
    U-GA*----A    1

    
    U-GG*----A    1

    
    U-UC*----U    1

    
    U-UG*----A    1

    
    U-UU*----C    1

    
    ---A*AA---    1

    
    ---A*UA---    1

    
    --GA*A----    1

    
    A---*A---U    1

    
    A---*U---U    1

    
    A--A*----A    1

    
    A--A*----C    1

    
    A--A*----G    1

    
    A--G*----U    1

    
    A-UA*-----    1

    
    C---*A---A    1

    
    C---*A---G    1

    
    C--C*----U    1

    
    C--U*----G    1

    
    C-A-*----G    1

    
    C-C-*----G    1

    
    C-U-*----A    1

    
    G---*G---G    1

    
    G--U*----U    1

    
    G-U-*----G    1

    
    U---*A---A    1

    
    U---*U---U    1

    
    U--A*----U    1

    
    U--C*----A    1

    
    U--U*----G    1

    
    U-U-*----C    1

    
    ---A*A----    1

    
    U-U-*-----    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_42771.1

Basepair signature:
cWW-cWW

81.09 29.40 3 1

Multiple bulged bases

2

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

79.78 18.27 3 1

Stack and bulge

3

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

65.73 20.78 3 1

Intercalated cWS

4

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

60.86 11.15 3 1

Major groove platform

5

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

58.99 0.25 4 1

6

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

55.62 5.77 2 1

Single stack bend

7

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

55.62 5.65 4 1

8

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

55.62 -4.99 2 1

Single stack bend

9

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

55.24 17.23 4 1

10

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

54.49 -11.13 3 1

Major groove intercalation

11

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

52.25 -28.22 5 1

12

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

50.19 -86.08 2 1

Major groove platform

13

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

48.13 -100.75 3 1

14

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

47.94 -108.01 2 1

Minor groove platform

15

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

47.57 -102.95 5 1

16

Motif group IL_82107.4

Basepair signature:
cWW-cWW

46.25 -22.48 3 1

Multiple bulged bases

17

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

45.51 -8.28 1 1

Single bulged U

18

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

45.51 -49.77 2 1

Single bulged G

19

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

41.76 -55.33 2 1

Single bulged C

20

Motif group IL_84476.1

Basepair signature:
cWW-cWW

40.45 -35.35 3 1

Multiple bulged bases

21

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

38.01 -48.85 3 2

22

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

37.64 -50.68 4 2

23

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

35.39 -60.23 4 2

24

Motif group IL_42626.2

Basepair signature:
cWW-cWW

35.21 -150.76 3 2

25

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

27.53 -42.30 2 1

Isolated non-canonical cWW pair

26

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

27.15 -45.77 3 1

Isolated non-canonical cWW pair

27

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

26.03 -19.31 3 1

Isolated non-canonical cWW contact

28

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

26.03 -51.84 2 1

Isolated cWS basepair

29

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

25.47 -66.12 2 1

Isolated non-canonical cWW pair

30

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

23.60 -88.10 2 1

Isolated non-canonical cWW pair

31

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

23.03 -83.96 2 1

Isolated cWH basepair

32

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

21.91 -75.03 3 2

33

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

14.23 -75.09 3 2

Isolated non-canonical cWW pair

34

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

13.86 -80.11 4 2

Isolated tWW turn

35

Motif group IL_83389.2

Basepair signature:
cWW-cWW

10.30 -128.64 4 2

36

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

9.18 -88.35 4 2

Isolated tHS basepair with bulges

37

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

8.24 -70.60 2 1

Single bulged A

38

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

6.93 -51.61 4 2

39

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

6.55 -2280.85 3 2

40

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

3.75 -65.94 4 2

41

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

2.06 -101.46 4 3

42

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

1.87 -134.16 4 2

43

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

1.50 -112.25 4 2

44

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

1.50 -149.70 5 3

45

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

1.31 -79.31 5 3

46

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.94 -95.20 5 2

47

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.94 -95.31 5 2

48

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.94 -141.52 4 2

49

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.75 -108.64 6 3

50

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.75 -130.66 6 4

51

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.75 -140.82 4 3

Decoding loop related

52

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.75 -148.17 4 3

53

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.75 -163.97 5 3

54

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.75 -8553.04 4 3

C-loop

55

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.56 -106.78 4 2

56

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.56 -176.32 4 2

Major groove platform with intercalated tWH

57

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.56 -193.39 4 2

Minor groove platform, major groove intercalation

58

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.56 -201.23 4 2

Major groove platform with intercalation

59

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.56 -374.13 3 3

Major groove minor groove platform; mini C-loop

60

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.56 -427.81 5 4

Minor groove platform

61

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.56 -9999.00 5 4

C-loop

62

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.37 -126.61 5 2

63

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.37 -128.33 5 3

64

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.37 -173.57 7 4

Multiple bulged bases

65

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.37 -197.29 4 3

Tandem non-canonical cWW pairs

66

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.37 -200.98 5 3

Major groove minor groove platform with intercalation; mini C-loop

67

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.19 -80.38 6 3

68

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.19 -100.73 6 4

69

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.19 -111.41 6 4

70

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.19 -117.17 5 3

71

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.19 -117.84 5 3

72

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.19 -125.96 7 5

73

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.19 -148.64 4 3

74

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.19 -150.38 6 5

75

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.19 -160.97 5 3

76

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.19 -173.45 7 5

77

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.19 -192.26 5 4

78

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.19 -198.60 4 3

Tandem non-canonical cWW pairs

79

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.19 -312.64 5 4

80

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.19 -329.19 6 4

81

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.19 -9999.00 6 4

82

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -95.66 8 5

83

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -97.60 6 4

84

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -106.42 5 3

Bulged stacked bases

85

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -107.57 5 3

Multiple bulged bases

86

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -109.57 5 4

87

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -109.85 5 3

88

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -111.04 7 4

89

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -111.34 6 4

90

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -111.55 5 3

91

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -113.31 5 3

92

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -114.54 5 3

93

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -115.80 6 3

94

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -117.28 5 3

95

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -118.04 5.5 3

96

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -118.50 5 4

97

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -119.65 5 4

98

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -120.30 8 5

99

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -123.53 7 4

100

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -123.64 5 4

101

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -124.89 6 4

102

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -125.81 6 4

103

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -127.33 6 5

Intercalated tWH

104

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -127.78 6 4

105

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -128.73 5 4

106

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -130.08 7 5

Pseudoknot

107

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -130.82 5 3

108

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -135.69 7 5

109

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -136.07 8 5

110

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -140.61 7 5

111

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -140.90 7 6

112

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -141.23 6 4

Receptor of 11-nt loop-receptor motif

113

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -141.38 9 6

114

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -141.87 7 5

115

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -141.96 7 5

Kink-turn related

116

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -143.66 7 5

117

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -144.00 8 6

118

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -144.54 7 5

119

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -144.59 6 4

120

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -146.55 8 6

121

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -146.73 6 5

122

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -147.17 7 5

123

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -147.34 8 5

Decoding loop related

124

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -148.41 7 5

125

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -149.34 8 6

126

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -150.63 5 3

Tandem non-canonical cWW pairs

127

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -151.90 5 3

128

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -154.03 6 4

Isolated non-canonical cWW pair

129

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -154.96 7 6

130

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -154.97 7 5

131

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -155.20 9 6

Part of G-quadruplex

132

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -155.22 5 3

Double sheared

133

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -156.31 8 6

134

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -156.47 7 5

135

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -158.08 9 7

136

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -158.18 6 4

Receptor of 11-nt loop-receptor motif

137

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -158.37 7 6

138

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -158.39 8 6

139

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -159.62 7 6

140

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -161.81 7 5

141

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -162.17 7 5

180 degree turn

142

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -162.98 8 6

143

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -163.06 7 5

144

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -163.94 8 6

145

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -164.12 8 6

146

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -164.41 6 3

Other IL

147

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -165.02 7 5

148

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -165.60 8 7

tSH-tHW

149

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -166.72 10 7

150

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -167.34 7 6

151

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -167.65 8 7

152

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -168.05 7 5

tSH-tHW

153

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -168.05 6 4

154

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -169.17 7 5

155

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -174.21 7 6

156

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -174.34 8 6

157

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -174.44 7 5

158

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -175.20 7 5

159

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -176.40 9 6

160

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -178.01 9 7

161

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -178.76 8 6

Vitamin B12 Aptamer

162

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -179.30 10 7

Reverse kink-turn related

163

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -180.12 5 3

Left turn

164

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -181.28 7 5

165

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -181.62 8 7

UAA/GAN with extra stack

166

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -181.78 7 6

UAA/GAN related

167

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -181.91 8 6

168

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -182.79 7 5

169

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -183.69 6 5

cWH basepair and non-canonical AC

170

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -183.86 7 5

AAA cross-strand stack

171

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -184.38 8 7

Triple sheared related

172

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -184.99 7 5

Major groove intercalation

173

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -186.28 7 6

6x5 Sarcin-Ricin; G-bulge

174

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -186.36 6 4

tSH-tHW

175

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -186.99 9 8

Reverse turn

176

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -187.37 6 4

177

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -187.47 6 4

178

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -187.55 7 5

179

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -188.45 5 4

UAA/GAN

180

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -189.15 7 6

181

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -189.52 8 7

182

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -191.01 6 4

Minor groove platform

183

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -194.47 9 7

184

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -194.73 5 3.5

185

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -194.80 6 4

186

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -195.07 6 5

187

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -195.94 9 7

188

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -195.94 9 7

189

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -197.86 7 4

190

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -198.52 9 7

191

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -198.56 9 8

192

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -199.59 10 8

193

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -200.02 8 7

UAA/GAN with tHH

194

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -200.30 9 8

195

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -200.72 8 6

196

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -200.81 8 7

197

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -201.27 9 7

198

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -202.29 8 5.5

199

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -202.35 9 7

Reverse kink-turn

200

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -203.77 9 8

201

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -204.51 8 7

Other IL

202

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -204.65 5 4

203

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -206.92 9 8

204

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -207.31 8 7

Kink-turn with embedded cWW pair

205

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -208.63 6 5

206

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -208.80 10 8

207

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -209.14 9 8

208

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -210.15 10 9

Kink-turn related

209

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -210.46 8 6

tSH-tHH-tHS

210

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -211.05 9 8

211

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -212.56 8 7

212

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -213.50 8 7

213

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -213.69 9 7

Kink-turn

214

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -214.23 9 6

215

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -216.77 10 8

tWH-tWH-tHW-tHW

216

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -217.31 9 8

217

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -217.65 11 9

218

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -217.91 8 8

Double sheared; A in syn; two near cWW pairs

219

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -218.40 11 9

220

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -218.59 6 4

221

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -219.31 9 8

222

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -219.58 11 9

223

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -222.27 9 8

tHW-tHW cross-strand stack

224

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -222.92 7 5

UAA/GAN

225

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -223.58 10 9

226

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -223.63 10 9

227

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -224.10 9 8

Sarcin-Ricin target in LSU H95; G-bulge

228

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -224.86 9 8

229

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -225.67 9 8

230

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -226.51 5 4

231

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -227.89 8 6

cWH basepair with bulged bases

232

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -228.75 10 8

Other IL

233

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -228.78 6 4

234

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -233.09 9 8

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

235

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -233.23 9.5 7

236

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -233.77 10 9

237

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -233.86 11 9

238

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -234.15 10 9

239

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -235.86 8 7

Minor groove platform

240

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -236.40 5 4

UAA/GAN variation

241

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -238.63 10 8

242

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -240.84 11 9

243

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -241.97 10 9

244

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -244.18 9 7

245

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -244.42 9 7

246

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -245.09 10 9

8x6 Sarcin-Ricin with inserted A; G-bulge

247

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -245.35 9 8

Kink-turn

248

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -245.75 9 7

Kink-turn related

249

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -246.34 8 7

tSH-tWH-tHS-cWW

250

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -246.73 11 9

251

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -246.76 10 8

252

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -247.13 8 7

UAA/GAN with extra cWW

253

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -248.08 9 8

tSH-tSH-tHH-tHS

254

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -248.83 8 8

7x6 Sarcin-Ricin; G-bulge

255

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -249.38 10 9

256

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -249.58 11 9

257

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -251.56 11 9

258

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -251.58 11 10

259

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -254.44 6 5

UAA/GAN related

260

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -254.52 8 7

Kink-turn from U4

261

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -255.43 10 8

262

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -256.41 9 9

Triple sheared with non-canonical cWW

263

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -257.61 10 9

tSH-tHS-tHW

264

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -258.53 10 9

7x7 Sarcin-Ricin with intercalated A; G-bulge

265

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -258.69 4.5 4

Double sheared

266

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -259.18 8 6

Triple sheared

267

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -259.57 9 6

268

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -259.85 11 10

269

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -260.08 10 9

270

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -260.17 11 9

271

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -261.31 10 7

272

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -262.86 11 10

273

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -263.16 11 10

274

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -263.54 12 11

275

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -264.72 10 10

276

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -266.23 8 7

277

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -266.52 9 8

tSH-tHW-tWH-tHS

278

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -267.98 7 5

279

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -268.28 10 9

8x6 Sarcin-Ricin with inserted Y; G-bulge

280

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -270.22 11 9

8x6 Sarcin-Ricin with bulged A; G-bulge

281

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -271.22 6 5

282

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -272.39 11 10

283

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -274.68 9 7

Kink-turn related

284

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -275.77 11 10

285

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -278.14 10 8

286

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -279.08 8 7

287

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -279.79 11 10

288

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -282.33 9 8

289

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -283.72 12 10

290

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -284.52 10 9

291

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -287.30 6 5

Triple non-canonical cWW pairs

292

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -288.11 11 10

8x7 Sarcin-Ricin; G-bulge

293

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -288.24 10 9

Kink-turn

294

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -291.21 6 5

tSH-tWH-tHS

295

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -291.61 6 3

296

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -292.52 7 6

Double sheared with non-canonical cWW

297

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -295.35 11 9

Reverse kink-turn related

298

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -296.95 10 10

299

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -297.33 8 7

Quadruple sheared

300

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -297.82 8 6

301

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -300.46 11 10

Kink-turn

302

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -301.19 10 10

8x7 Sarcin-Ricin; G-bulge

303

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -301.81 14 13

304

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -301.82 10 9

Kink-turn

305

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -301.89 12 11

306

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -302.77 13 11

307

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -303.41 13 11

308

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -303.47 12 11

309

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -306.85 11 10

310

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -307.91 12 10

Pseudoknot

311

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -308.16 12 12

312

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -308.50 9 9

Kink-turn

313

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -308.61 13 12

tSH-tHW-tHH-tHS

314

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -309.82 11 9

315

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -310.08 12 11

316

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -310.10 11 10

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

317

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -313.91 10 9

318

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -315.53 12 11

319

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -316.83 6 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

320

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -318.82 15 14

321

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -324.14 16 15

322

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -325.34 7 5

323

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -325.41 9 9

Kink-turn

324

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -326.04 11 10

Kink-turn

325

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -326.91 13 12

326

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -328.30 11 10

327

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -329.19 16 15

Kink-turn related

328

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -329.76 12 10

329

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -330.12 12 11

330

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -330.66 13 12

331

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -331.70 7 5

332

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -332.79 9 8

Kink-turn

333

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -333.77 9 8

334

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -335.88 6 3

8-nt loop receptor

335

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -336.15 13 12

336

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -337.20 13 12

337

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -340.06 6 5

338

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -340.10 13 12

339

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -341.68 14 13

340

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -342.66 13 12

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

341

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -343.45 6 6

Triple sheared

342

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -343.50 6 4

343

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -343.77 14 13

10x8 Sarcin-Ricin; G-bulge

344

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -344.98 7 6

345

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -346.35 13 11

346

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -347.21 11 10

347

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -347.52 16 15

Pseudoknot

348

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -347.61 9 9

Kink-turn

349

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -349.79 17 15

350

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -351.02 13 12

351

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -351.67 15 15

352

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -351.70 10 9

Kink-turn

353

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -353.67 11 11

354

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -354.54 14 12

355

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -354.88 15 14

356

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -355.78 13 12

357

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -358.01 14 13

358

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -358.98 14 12

359

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -363.27 6 4

360

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -363.69 4 3

Minor groove platform

361

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -369.79 15 15

362

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -371.98 6 5

363

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -382.40 7 7

SSU/LSU pseudoknot

364

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -383.76 18 17

Kink-turn

365

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -384.45 16 15

366

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -386.55 14 12

367

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -390.54 14 13

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

368

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -396.61 16 15

369

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -397.81 13 12

370

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -401.28 16.5 16

371

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -402.24 13 13

372

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -404.68 13 13

373

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -410.75 10 9

Minor groove platform related

374

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -412.16 13 13

Bacterial 5S Loop E

375

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -415.30 12 11

Kink-turn related

376

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -418.06 14 12

377

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -421.70 16 14

Pseudoknot

378

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -423.37 4 3

Major groove platform; stack outside cWW

379

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -427.57 14 13

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

380

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -428.20 19 17

381

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -429.67 16 15

382

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -441.77 18 18

383

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -443.38 18 18

384

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -452.09 18 18

385

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -489.06 8 6

Major groove intercalation

386

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -497.36 19 18

Kink-turn related

387

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -499.70 16 16

388

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -524.16 9 7

389

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -530.52 22 21

390

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -537.35 11 9

391

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -548.37 20 20

392

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -555.87 22 21

393

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -563.65 11 9

Part of G-quadruplex

394

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -583.85 23 23

395

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -603.42 24 23

396

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -603.43 7 5

Symmetric double minor groove platform

397

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -610.46 9 9

Kink-turn with non-sequential stacking

398

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -622.37 12 11

399

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -626.00 12 10

400

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -632.43 11 10

401

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -660.20 15 14

402

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -667.64 8 6

403

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -738.11 10 8

Kink-turn

404

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -758.00 14 13

405

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -761.90 6 3

406

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -784.58 20 20

407

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6231.28 9 8

408

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6943.99 7 5

C-loop with bulged stacked A's

409

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 21 20

410

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 17 17

411

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 22 22

Coloring options: