RNA 3D Hub

JAR3D Query RF03072-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03072 maps to these 6 chains: 9CXF|1|A, 9E73|1|A, 9E74|1|A, 9E75|1|A, 9ELY|1|A, 9G7C|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 2 Internal loop

Column numbers: 125-137, 296-297 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    AGGCA-AAACGAU*GU   79

    
    AGGCG-AAACGAU*GU   69

    
    GGUCA-AAGGGAU*GC   51

    
    AGGCA-AAGCGAU*GU   24

    
    GGUCA-AAAGGAU*GC   19

    
    GGGCA-AAGGGAU*GC   17

    
    GGGCA-AAAGGAU*GC   16

    
    AGCCA-AAACGAU*GU   15

    
    AGGCG-AAGCGAU*GU   14

    
    AGGCG-AAACGGC*GU   11

    
    GGGCG-AAAGGAU*GC   11

    
    AGGCA-AAGGGAU*GU    9

    
    AGGCC-AAGCGGU*GU    9

    
    AGGCG-AAACGAC*GU    9

    
    AGGCA-AAGCGGU*GU    8

    
    AGGCG-AAACGGU*GU    8

    
    GGGCA-AAACGAU*GC    8

    
    AGACC-AAGCGAU*GU    7

    
    AGCCA-AAGCGAU*GU    7

    
    GGUCG-AAAGGAU*GC    7

    
    AGGCG-AAGGGAU*GU    6

    
    GGUCG-AAAGGAC*GC    5

    
    AGACG-AAGCGAU*GU    4

    
    AGGCA-AAACGGU*GU    4

    
    AGGCA-AAAGGAU*GU    4

    
    GGGCA-AAAGGUC*GC    4

    
    GGGCA-AAGGGAC*GC    4

    
    AGGCG-AAGGAAU*GU    3

    
    GGGCA-AAGCGGU*GC    3

    
    GGGCG-AAACGAC*GC    3

    
    AGGCA-AAGGAAU*GU    2

    
    AGGCG-AAGCGGU*GU    2

    
    GGCCA-AAGGGAU*GC    2

    
    GGGCA-AAAGGAC*GC    2

    
    GGGCA-AAGGGUC*GC    2

    
    GGGCG-AAGCGAU*GG    2

    
    GGUCA-AAAGGGU*GC    2

    
    GGUCG-AAGGGAU*GC    2

    
    AGCCAAAAACGAU*GU    1

    
    AGGCAAAAACGAU*GU    1

    
    AGGCA-AAACAAU*GU    1

    
    AGGCA-AAACGAC*GU    1

    
    AGGCA-AAACGGC*GU    1

    
    AGGCA-AAAGGAC*GU    1

    
    AGGCA-AAGCAAU*GU    1

    
    AGGCA-AAGGGAC*GU    1

    
    AGGCC-AAACGAU*GU    1

    
    AGGCC-AAACGGU*GU    1

    
    AGGCG-AAAGGAU*GU    1

    
    AGGCU-AAACGAC*GU    1

    
    CGGCC-AAGCGGU*GU    1

    
    GCGCG-AAACGAC*GC    1

    
    GCGCG-AAACGCU*GC    1

    
    GGCCA-AAAGGAU*GC    1

    
    GGCCA-AAGGGAC*GC    1

    
    GGCCG-AAAGGAC*GC    1

    
    GGCCG-AAAGGAU*GC    1

    
    GGCCG-AAUGGAC*GC    1

    
    GGGCA-AAACGAC*GC    1

    
    GGGCA-AAACGGU*GC    1

    
    GGGCA-AAGCGAU*GC    1

    
    GGGCA-AAGCGAU*GG    1

    
    GGGCA-AAGGGCU*GC    1

    
    GGGCG-AAACGAU*GC    1

    
    GGGCG-AAAGGUC*GC    1

    
    GGGCG-AAGCGAU*GC    1

    
    GGGCG-AAGGGAU*GC    1

    
    GGGCG-AAGGGUC*GC    1

    
    GGUCA-AAGGGAC*GC    1

    
    GGUCG-AAGGAGU*GC    1

    
    GGUCU-AAAGGGU*GC    1

    
    AGC---AAACGAU*GU    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.20 -55.04 8 4

2

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -67.43 7 4

3

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -68.22 7 4

4

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -69.84 7 5

5

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -74.83 8 6

Part of G-quadruplex

6

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -86.48 10 6

7

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -101.72 12 9

Pseudoknot

8

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -102.16 9 6

9

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -106.76 10 7

10

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -111.23 9 6

11

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -117.57 9 5

12

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -119.02 8 6

13

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -119.03 11 7

14

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -125.72 8 5

15

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -127.21 11 9

16

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -141.04 8 6

17

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -142.32 7 6

Minor groove platform

18

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -145.14 8 6

19

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -150.13 9 6

20

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -150.94 10 8

21

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -156.05 14 11

Kink-turn related

22

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -163.07 11 9

23

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -166.34 11 8

24

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -169.66 13 11

25

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -171.52 9 8

26

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -175.08 12 9

27

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -175.64 12 10

28

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -178.61 8 6

29

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -179.73 10 8

30

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -197.92 14 11

31

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -199.54 10 7

32

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -199.78 12 10

Pseudoknot

33

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -201.63 10 7

34

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -208.15 12 9

Reverse kink-turn related

35

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -210.52 12 8

36

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -210.91 10 7

37

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -211.85 10 8

38

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -212.98 16 13

Kink-turn

39

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -218.98 14 10

40

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -228.95 7 5

41

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -231.52 8 6

Vitamin B12 Aptamer

42

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -235.95 9 7

43

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -239.92 13 11

44

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -240.19 15 13

45

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -240.34 10 7

46

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -252.49 11 9

47

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -255.29 11 8

48

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -264.12 11 8

49

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -264.89 12 11

50

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -266.67 9 8

51

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -266.70 9 7

52

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -267.43 8 6

Kink-turn related

53

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -268.71 15 13

54

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -273.08 16 14

55

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -273.83 13 11

56

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -276.30 10 8

cWH basepair with bulged bases

57

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -277.94 10 9

58

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -279.34 17 14

59

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -281.03 7 5

SSU/LSU pseudoknot

60

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -282.95 16 15

61

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -284.26 13 12

Pseudoknot

62

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -284.68 9 6

63

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -287.25 10 9

64

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -290.16 17 15

65

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -291.22 10 9

66

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -295.06 9 7

67

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -296.56 11 8

68

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -296.80 13 11

69

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -296.90 11 8

Major groove intercalation

70

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -297.14 15 14

71

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -301.20 12 10

72

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -305.64 8 7

73

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -305.68 10 8

74

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -307.53 11 10

Reverse turn

75

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -310.15 13 11

76

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -313.81 16 15

77

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -314.80 8 6

78

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -320.56 10 8

79

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -325.80 9 7

80

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -328.50 9 8

81

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -329.41 9 6

82

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -331.80 11 9

83

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -336.83 12 9

84

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -344.66 13 11

85

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -350.73 14 14

86

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -361.44 10 8

87

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -362.18 20 18

88

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -363.78 11 8

89

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -365.94 12 9

90

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -366.45 10 8

Kink-turn

91

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -367.59 11 8

92

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -367.88 11 10

93

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -368.40 13 12

94

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -370.45 11 9

Pseudoknot

95

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -372.49 10 8

tSH-tHW

96

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -372.97 11 9

97

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -374.96 10 9

98

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -375.51 13 10

99

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -375.62 10 9

100

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -378.92 14 13

101

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -385.22 13 10

102

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -385.89 9 7

103

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -386.82 10 7

104

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -392.50 13 12

105

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -396.92 12 11

106

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -397.28 9 7

107

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -398.45 9 7

108

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -402.63 11 8

109

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -403.49 12 11

110

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -404.91 10 9

Intercalated tWH

111

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -405.55 15 14

112

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -405.98 12 11

113

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -408.52 13 12

114

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -408.61 8 6

Major groove intercalation

115

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -408.74 10 8

116

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -409.70 10 8

117

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -410.48 12 10

118

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -410.51 10 9

119

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -411.96 12 10

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

120

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -418.32 13 13

121

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -418.72 11 9

122

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -420.83 11 9

UAA/GAN related

123

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -422.02 11 9

124

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -423.89 10 8

Reverse kink-turn

125

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -424.16 12 10

126

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -424.77 13 11

127

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -427.41 11 9

Kink-turn

128

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -428.47 15 13

129

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -428.75 11 10

130

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -432.58 12 10

131

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -438.78 21 19

132

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -440.44 14 12

133

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -441.44 12 11

134

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -442.45 13 11

8x6 Sarcin-Ricin with inserted A; G-bulge

135

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -443.40 9 8

136

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -443.80 10 9

137

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -444.64 10 8

138

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -447.86 9 7

139

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -448.12 12 10

140

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -449.64 21 19

141

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -451.05 11 10

142

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -454.20 15 13

143

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -456.94 10 8

180 degree turn

144

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -458.62 11 8

145

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -465.60 14 11

146

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -466.61 13 10

147

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -470.93 13 10

148

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -474.61 13 11

Sarcin-Ricin target in LSU H95; G-bulge

149

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -482.57 11 9

Kink-turn with embedded cWW pair

150

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -503.79 12 12

151

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -505.69 14 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

152

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -512.40 15 12

10x8 Sarcin-Ricin; G-bulge

153

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -521.40 10 9

154

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -525.29 13 11

155

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -526.02 8 7

tSH-tHS-tHW

156

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -526.35 11 9

157

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -531.82 12 10

158

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -532.01 9 8

Isolated non-canonical cWW pair

159

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -536.34 13 12

160

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -538.11 13 11

161

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -540.56 8 7

162

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -547.53 13 11

163

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -553.03 9 8

164

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -553.40 12 9

165

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -564.43 11 9

166

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -564.83 13 10

167

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -583.10 12 10

168

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -591.69 9 7

Left turn

169

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -597.56 10 8

Multiple bulged bases

170

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -604.37 11 9

171

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -605.58 10 9

172

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -607.08 10 7

Major groove minor groove platform with intercalation; mini C-loop

173

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -608.56 9 7

174

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -610.97 9 9

Decoding loop related

175

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -611.57 12 10

176

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -615.20 11 9

177

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -629.05 11 11

178

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -638.47 10 8

Bulged stacked bases

179

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -641.60 13 13

180

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -648.43 10 8

tSH-tHW

181

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -651.54 11 11

182

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -662.37 9 8

183

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -693.30 9 7

184

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -696.65 9 8

185

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -707.54 11 9

186

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -710.55 12 10

AAA cross-strand stack

187

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -713.55 9 9

188

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -738.09 10 7

189

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -783.15 11 10

190

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -802.65 9 8

191

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -819.54 9 8

Major groove platform with intercalated tWH

192

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -839.76 10 8

193

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -850.20 9 9

194

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -882.39 10 8

195

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -958.41 9 9

196

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -4304.52 14 12

197

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -4346.22 15 13

198

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -4351.85 11 10

199

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -4367.16 16 14

200

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -4431.60 11 11

201

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -4448.59 17 16

Kink-turn related

202

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4472.94 23 23

203

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4485.35 22 21

204

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -4527.78 19 19

205

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4532.91 17 16

206

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4694.03 12 9

207

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -4782.71 13 12

tSH-tHW-tHH-tHS

208

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -4925.35 12 11

209

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -4934.47 17 15

210

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -4953.19 15 13

211

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -5021.67 15 13

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

212

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5097.58 15 13

213

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -5101.97 17 15

214

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -5124.19 11 9

215

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -5126.85 14 12

8x7 Sarcin-Ricin; G-bulge

216

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -5128.67 13 11

Minor groove platform related

217

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -5131.47 13 11

218

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5163.72 13 13

Bacterial 5S Loop E

219

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -5176.24 12 9

Reverse kink-turn related

220

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5194.78 10 7

221

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -5198.79 9 9

tHW-tHW cross-strand stack

222

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -5234.70 11 11

Kink-turn related

223

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5240.63 9 7

224

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -5244.10 14 12

225

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -5258.84 11 10

8x6 Sarcin-Ricin with inserted Y; G-bulge

226

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -5270.34 14 12

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

227

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -5273.88 12 11

7x7 Sarcin-Ricin with intercalated A; G-bulge

228

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -5273.94 10 8

Kink-turn

229

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -5274.38 13 11

230

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5274.93 12 12

tWH-tWH-tHW-tHW

231

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -5279.09 12 10

8x6 Sarcin-Ricin with bulged A; G-bulge

232

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5280.58 11 10

233

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -5283.30 13 12

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

234

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5284.91 12 10

Other IL

235

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -5285.75 12 10

Kink-turn

236

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -5289.57 12 11

237

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -5293.96 11 11

Triple sheared with non-canonical cWW

238

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5305.92 12 11

Kink-turn related

239

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -5316.04 13 11

240

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5317.92 9 7

241

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5320.06 12 11

8x7 Sarcin-Ricin; G-bulge

242

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5321.66 9 7

243

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5335.78 12 11

244

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -5335.91 12 11

245

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -5345.91 15 15

Kink-turn

246

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5352.58 12 11

247

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -5361.26 13 13

Kink-turn

248

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -5361.40 14 12

249

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5371.56 14 12

Kink-turn with non-sequential stacking

250

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -5371.87 12 10

Kink-turn

251

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -5376.31 12 11

252

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -5408.72 15 13

253

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -5416.91 12 11

Kink-turn

254

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -5467.16 12 11

255

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -5469.08 16 13

256

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -5490.85 11 10

Part of G-quadruplex

257

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -5532.59 11 9

258

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -5546.08 14 12

259

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -5547.40 10 10

tSH-tSH-tHH-tHS

260

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -5568.73 13 10

Kink-turn related

261

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -5639.64 12 11

262

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5667.71 10 9

263

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5673.45 11 11

7x6 Sarcin-Ricin; G-bulge

264

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -5705.51 10 9

265

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -5730.68 15 15

Kink-turn

266

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -5737.22 9 8

Kink-turn

267

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -5778.49 13 12

268

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -5801.34 14 13

Kink-turn

269

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5814.14 10 10

270

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5847.92 9 7

271

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5874.78 10 9

272

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -5881.51 9 8

273

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -5888.41 12 12

274

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -5888.93 10 10

Triple sheared related

275

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5911.08 11 10

Double sheared; A in syn; two near cWW pairs

276

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -5916.90 12 11

Kink-turn related

277

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5927.56 12 10

tSH-tWH-tHS-cWW

278

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -5961.57 10 9

UAA/GAN with tHH

279

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -6023.48 12 10

6x5 Sarcin-Ricin; G-bulge

280

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -6056.41 11 10

281

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -6117.35 11 9

UAA/GAN with extra stack

282

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -6183.24 12 11

283

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -6184.42 10 8

Kink-turn from U4

284

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6245.78 12 10

tSH-tHW-tWH-tHS

285

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6276.92 11 11

286

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6358.69 12 12

287

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -6383.91 11 10

Other IL

288

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6394.40 11 10

Receptor of 11-nt loop-receptor motif

289

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -6488.17 11 10

Receptor of 11-nt loop-receptor motif

290

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -6505.87 13 9

291

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -6591.34 11 10

292

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -6612.06 11 10

UAA/GAN with extra cWW

293

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -6674.21 11 10

294

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -6674.63 11 10

295

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -6715.07 11 10

296

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6868.08 9 7

Kink-turn

297

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -6896.32 11 10

tSH-tHH-tHS

298

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -7008.92 11 10

299

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -7022.14 12 10

Quadruple sheared

300

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7073.66 10 9

C-loop with bulged stacked A's

301

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7099.82 9 6

302

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -7180.74 10 8

303

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7185.53 12 11

Symmetric double minor groove platform

304

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -7273.37 9 8

305

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7275.26 9 7

306

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7350.98 10 10

8-nt loop receptor

307

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7376.63 10 8

308

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7552.03 9 8

309

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -7746.76 10 8

310

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7844.95 12 10

Triple sheared

311

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -7960.18 12 10

cWH basepair and non-canonical AC

312

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8085.80 11 8

313

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -8187.83 11 10

Tandem non-canonical cWW pairs

314

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8265.94 9 7

315

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -8282.60 11 10

UAA/GAN

316

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8327.29 11 8

317

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -8348.86 11 9

318

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8365.04 12 10

319

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8388.35 12 9

Major groove platform

320

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -8413.58 11 10

UAA/GAN

321

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -8442.43 13 11

322

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8454.37 13 11

323

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8600.03 11 9

324

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -8697.69 11 10

Double sheared with non-canonical cWW

325

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -8737.55 13 11

Double sheared

326

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8814.73 9 8

C-loop

327

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8830.50 12 10

Other IL

328

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8835.97 12 11

329

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8838.95 10 10

tSH-tWH-tHS

330

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -8865.87 10 10

5x5 Sarcin-Ricin with intercalated A; G-bulge

331

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -9028.27 10 8

332

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9231.99 10 8

333

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9314.67 11 9

334

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -9371.42 11 8

335

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -9431.07 10 10

Triple non-canonical cWW pairs

336

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -9441.28 10 9

tSH-tHW

337

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -9498.57 11 10

338

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -9518.31 12 10

339

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9555.33 10 10

Triple sheared

340

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9692.32 10 8

341

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9697.79 11 9

342

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9724.77 11 8

343

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -9791.56 12 9

344

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9837.75 11 9

Multiple bulged bases

345

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9893.08 12 10

Minor groove platform

346

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9947.52 9 7

347

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged G

348

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 8

Major groove platform with intercalation

349

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 8 7

C-loop

350

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 10 8

Isolated non-canonical cWW pair

351

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 9 9

352

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9999.00 10 10

Double sheared

353

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 11 9

354

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 11 10

Isolated cWH basepair

355

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

356

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 13 10

357

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 10 9

Isolated non-canonical cWW pair

358

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 8 7

Minor groove platform

359

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 9

360

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -9999.00 9 9

UAA/GAN variation

361

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -9999.00 10 10

362

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

Single stack bend

363

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 11 10

Isolated non-canonical cWW pair

364

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged A

365

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 9 9

Decoding loop related

366

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

Stack and bulge

367

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 8

368

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 9 9

369

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 11 9

370

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

371

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 9

Multiple bulged bases

372

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 10 9

Isolated cWS basepair

373

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 10 9

Isolated non-canonical cWW contact

374

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 9 7

Minor groove platform

375

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 8

Major groove platform

376

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 9 8

Major groove platform; stack outside cWW

377

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -9999.00 9 9

378

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 8

Minor groove platform

379

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 10 10

380

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9999.00 10 7

381

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

382

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 11 10

Isolated non-canonical cWW pair

383

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 10 9

384

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

385

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged C

386

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 11 8

387

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 9

388

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Major groove intercalation

389

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 11 10

Isolated tWW turn

390

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 8 7

Major groove minor groove platform; mini C-loop

391

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 10 9

392

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 8

393

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 8

394

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 8

395

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 12 10

Tandem non-canonical cWW pairs

396

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -9999.00 10 9

UAA/GAN related

397

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 9

398

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 8

Intercalated cWS

399

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

Multiple bulged bases

400

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 9 8

401

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 12 9

402

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 11 9

Multiple bulged bases

403

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 10 9

Tandem non-canonical cWW pairs

404

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 11 9

Isolated tHS basepair with bulges

405

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 10 9

Isolated non-canonical cWW pair

406

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged U

407

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 9 9

408

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

Single stack bend

409

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 7

Minor groove platform, major groove intercalation

410

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 12 9

411

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 11 9

Coloring options: