RNA 3D Hub

JAR3D Query RF03072-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03072 maps to these 6 chains: 9CXF|1|A, 9E73|1|A, 9E74|1|A, 9E75|1|A, 9ELY|1|A, 9G7C|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 4 Internal loop

Column numbers: 142-145, 288-291 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GUAA*UGAG  190

    
    GUAA*CGAU   92

    
    GUAA*UGAU   79

    
    AUAA*UGAG   55

    
    GUAA*CGAG   29

    
    GUAA*GGAG   29

    
    GUAA*UUAU    3

    
    UUAA*UGAG    3

    
    GUAA*AGAU    2

    
    AUAA*CGAA    1

    
    AUAA*UGAA    1

    
    GUAA*AGAG    1

    
    GUAA*CUAU    1

    
    GUAA*GGAU    1

    
    GUAA*UUAG    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

99.59 35.77 3 0

Tandem non-canonical cWW pairs

2

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

68.03 -45.89 3 2

3

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

67.21 10.41 2 1

4

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

54.10 5.70 3 2

Double sheared

5

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

47.34 5.47 5 2

6

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

47.34 4.56 2 1

Double sheared

7

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

36.48 -10.76 5 2

8

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

35.86 -5.35 4 1

Tandem non-canonical cWW pairs

9

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

28.28 -1.83 4 1

tSH-tHW

10

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

17.42 -19.48 3 2

Minor groove platform

11

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.61 -19.90 4 3

12

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.61 -23.59 5 2

13

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.61 -25.69 3 2

14

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.61 -26.60 5 2

15

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.61 -27.42 3 1

UAA/GAN variation

16

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.61 -30.31 3 2

17

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.61 -30.69 4 1

UAA/GAN related

18

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.61 -42.44 4 2

19

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.61 -85.27 6 4

20

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -34.47 5 2

21

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -36.28 3 2

AAA cross-strand stack

22

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -36.65 5 2

tSH-tHW

23

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -41.73 4 2

tSH-tWH-tHS

24

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -44.67 6 3

25

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -45.27 4 2

5x5 Sarcin-Ricin with intercalated A; G-bulge

26

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -46.49 3 2

UAA/GAN

27

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -47.37 5 3

28

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -48.12 4 2

29

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -49.66 5 3

Decoding loop related

30

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -53.15 6 3

31

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -54.52 6 3

tSH-tHW

32

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -55.02 4 3

33

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -55.82 5 3

34

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -56.39 4 1

35

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -56.50 4 1

Isolated non-canonical cWW pair

36

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -56.52 5 3

37

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -56.95 4 3

38

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -57.77 7 4

39

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -58.16 5 2

40

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -58.19 7 3

Pseudoknot

41

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -58.29 5 3

42

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -59.48 6 3

43

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -60.49 6 3

44

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -61.47 4 2

45

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -61.71 3 1

Isolated non-canonical cWW pair

46

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -62.76 3 2

47

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -63.86 5 2

48

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -64.37 6 3

49

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -64.68 4 3

UAA/GAN related

50

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -65.09 4 3

51

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -66.09 5 3

52

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -66.48 6 3

180 degree turn

53

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -66.69 7 4

54

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -67.38 5 3

55

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -68.06 7 4

56

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -69.06 6 3

tSH-tHH-tHS

57

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -69.17 4 3

58

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -69.20 4 2

Tandem non-canonical cWW pairs

59

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -70.21 7 4

Triple sheared related

60

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -70.54 5 3

Triple sheared

61

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -70.60 5 3

62

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -70.96 5 4

63

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -71.15 8 5

64

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -71.40 6 4

65

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -71.65 5 3

UAA/GAN with tHH

66

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -71.85 6 3

67

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -72.02 4 2

68

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -72.18 6 3

69

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -72.66 5 3

6x5 Sarcin-Ricin; G-bulge

70

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -73.71 5 4

71

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -74.16 5 4

UAA/GAN with extra stack

72

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -74.45 5 2

73

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -74.91 4 3

74

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -75.27 5 4

cWH basepair and non-canonical AC

75

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -75.56 5 3

76

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -76.93 3 1

Decoding loop related

77

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -77.48 5 2

78

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -79.01 7 4

79

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -79.55 5 3

Major groove minor groove platform with intercalation; mini C-loop

80

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -80.75 5 2

Multiple bulged bases

81

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -81.53 7 4

Intercalated tWH

82

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -83.75 7 5

83

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -85.22 4 3

84

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -85.35 3 2

Isolated non-canonical cWW pair

85

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -85.77 4 2

86

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -87.85 4 3

87

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -88.11 6 3

88

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -88.36 3 2

89

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -88.65 4 3

90

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -89.28 8 5

91

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -89.39 7 4

92

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -91.35 5 2

Triple non-canonical cWW pairs

93

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -91.41 5 3

94

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -91.72 5 5

95

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -91.78 5 4

Double sheared; A in syn; two near cWW pairs

96

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -92.02 5 2

97

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -93.20 8 5

98

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -93.65 6 3

99

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -93.77 6 4

tSH-tWH-tHS-cWW

100

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -94.74 7 5

101

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -94.75 6 4

102

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -94.77 5 3

Double sheared with non-canonical cWW

103

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -95.96 6 4

104

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -96.51 7 4

Other IL

105

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -96.92 8 5

Kink-turn with embedded cWW pair

106

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -98.70 6 4

Reverse kink-turn

107

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -99.11 6 4

Kink-turn related

108

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -99.47 8 5

109

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -99.64 7 5

110

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -99.78 6 5

111

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -100.62 7 5

Other IL

112

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -100.71 6 5

113

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -102.35 3 3

Triple sheared

114

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -102.44 6 5

115

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -102.51 7 4

Other IL

116

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -102.76 6 5

117

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -104.45 8 6

118

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -106.32 7 5

Kink-turn related

119

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -109.16 5 2

120

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -109.26 5 3

121

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -110.25 7 4

122

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -110.30 6 5

123

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -110.33 5 2

124

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -110.44 8 5

125

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -112.54 3 2

Stack and bulge

126

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -112.60 6 4

127

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -112.76 5 4

UAA/GAN

128

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -112.91 4 2

Isolated cWS basepair

129

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -113.40 5 2

130

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -114.05 5 3

Isolated non-canonical cWW pair

131

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -115.25 3 2

132

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -115.51 6 4

133

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -115.64 6 5

134

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -115.65 7 6

135

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -115.92 4 4

UAA/GAN with extra cWW

136

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -116.25 5 3

137

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -116.93 6 3

Multiple bulged bases

138

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -117.56 3 2

Isolated tHS basepair with bulges

139

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -117.57 9 6

Part of G-quadruplex

140

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -117.81 4 3

141

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -117.99 5 4

142

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -118.94 7 6

143

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -119.13 5 5

Sarcin-Ricin target in LSU H95; G-bulge

144

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -121.33 6 5

tSH-tHW-tWH-tHS

145

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -121.53 3 3

146

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -121.83 3 1

Isolated non-canonical cWW pair

147

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -122.28 9 6

Reverse turn

148

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -123.32 8 5

149

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -125.33 7 6

150

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -125.76 5 4

151

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -126.55 7 6

152

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -128.56 6 6

153

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -130.02 8 6

154

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -130.93 5 4

Receptor of 11-nt loop-receptor motif

155

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -131.23 6 5

156

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -132.79 5 2

157

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -132.93 6 5

tSH-tSH-tHH-tHS

158

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -134.84 5 5

7x6 Sarcin-Ricin; G-bulge

159

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -134.89 8 6

160

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -134.90 8 6

161

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -135.02 5 2

162

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -135.94 9 7

163

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -136.11 10 7

164

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -136.56 8 6

8x6 Sarcin-Ricin with inserted A; G-bulge

165

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -137.32 3 2

Isolated non-canonical cWW contact

166

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -137.44 4 3

167

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -137.98 7 5

168

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -138.34 6 5

Quadruple sheared

169

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -138.59 8 6

tWH-tWH-tHW-tHW

170

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -138.87 5 3

171

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -139.07 8 6

172

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -139.24 4 2

Multiple bulged bases

173

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -140.24 7 5

174

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -140.89 8 5

175

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -141.59 9 6

176

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -141.84 9 7

Kink-turn related

177

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -144.41 8 6

tHW-tHW cross-strand stack

178

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -146.56 6 5

179

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -146.71 8 5

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

180

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -147.20 6 5

181

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -147.25 6 3

182

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -148.42 5 2

183

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -148.66 8 6

7x7 Sarcin-Ricin with intercalated A; G-bulge

184

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -148.83 8 6

185

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -152.43 8 7

186

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -152.64 3 2

Major groove platform with intercalated tWH

187

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -153.19 4 2

188

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -153.99 5 3

Multiple bulged bases

189

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -154.13 5 4

Kink-turn

190

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -154.13 5 4

Receptor of 11-nt loop-receptor motif

191

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -154.22 6 4

192

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -154.29 3 2

Isolated cWH basepair

193

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -154.66 5 4

194

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -154.99 8 6

195

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -155.67 6 5

Kink-turn

196

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -155.79 8 7

197

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -156.97 8 7

198

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -157.73 9 6

199

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -158.73 7 5

200

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -159.86 6 3

201

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -160.60 8 6

Triple sheared with non-canonical cWW

202

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -161.16 4 3

Isolated tWW turn

203

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -162.02 8 7

204

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -162.52 8 7

205

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -162.92 6 3

206

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -164.48 8 6

8x6 Sarcin-Ricin with bulged A; G-bulge

207

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -165.20 4 2

Minor groove platform

208

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -167.48 6 3

209

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -167.89 5 2

210

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -168.15 4 2

211

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -168.25 6 6

cWH basepair with bulged bases

212

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -169.11 8 7

213

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -169.36 8 7

214

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -169.78 3 2

Major groove platform; stack outside cWW

215

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -172.66 8 6

8x6 Sarcin-Ricin with inserted Y; G-bulge

216

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -174.68 4 2

Major groove intercalation

217

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -174.75 4 2

Major groove minor groove platform; mini C-loop

218

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -175.45 5 5

Kink-turn

219

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -176.68 10 8

220

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -180.63 4 3

Intercalated cWS

221

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -180.72 10 7

222

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -183.16 9 7

Reverse kink-turn related

223

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -185.73 10 8

224

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -186.34 6 4

225

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -186.41 5 3

226

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -187.35 5 3

227

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -187.51 7 6

Kink-turn

228

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -189.26 10 7

229

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -189.40 9 7

230

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -189.79 7 7

8x7 Sarcin-Ricin; G-bulge

231

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -191.21 9 8

232

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -191.95 6 3

233

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -194.03 6 5

234

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -194.22 6 5

235

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -195.04 4 3

Major groove platform

236

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -195.51 11 9

237

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -197.34 10 8

238

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -197.52 4 3

Multiple bulged bases

239

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -200.42 9 7

240

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -202.28 8 7

8x7 Sarcin-Ricin; G-bulge

241

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -202.44 8 7

242

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -203.23 3 3

Major groove platform with intercalation

243

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -203.51 9 7

244

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -204.08 8 6

245

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -204.73 10 8

246

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -205.81 10 8

247

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -205.91 4 3

248

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -206.06 10 8

249

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -207.02 6 6

Vitamin B12 Aptamer

250

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -207.52 11 8

251

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -208.74 7 7

Kink-turn

252

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -209.04 10 8

253

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -209.66 8 6

tSH-tHS-tHW

254

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -211.21 10 9

255

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -211.68 10 9

256

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -212.46 7 7

257

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -214.41 10 9

258

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -215.16 9 6

Major groove intercalation

259

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -215.20 6 3

260

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -217.77 9 7

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

261

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -218.25 6 4

Kink-turn from U4

262

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -218.87 9 8

263

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -219.25 6 5

264

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -221.06 10 9

tSH-tHW-tHH-tHS

265

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -222.28 7 5

266

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -222.90 9 7

267

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -228.63 5 4

268

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -229.36 8 8

269

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -232.21 7 6

270

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -233.03 11 11

271

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -233.72 9 9

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

272

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -233.94 4 3

Minor groove platform, major groove intercalation

273

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -233.97 9 8

274

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -234.54 9 7

275

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -234.70 6 4

276

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -234.92 7 5

277

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -238.26 10 9

278

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -238.74 8 7

279

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -240.08 5 3

Left turn

280

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -240.55 9 7

Minor groove platform

281

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -241.01 5 3

282

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -242.11 7 5

Bulged stacked bases

283

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -242.94 11 9

284

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -243.23 8 6

285

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -243.62 11 11

286

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -244.69 7 4

287

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -246.50 11 9

288

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -247.16 12 9

289

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -247.42 9 9

290

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -247.96 4 3

Isolated non-canonical cWW pair

291

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -248.11 9 7

292

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -251.51 10 9

293

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -252.69 4 3

Single stack bend

294

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -253.17 3 3

Major groove platform

295

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -253.47 7 4

296

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -253.65 12 10

297

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -255.16 12 10

298

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -256.77 11 9

299

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -258.99 4 3

Minor groove platform

300

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -259.39 5 4

301

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -259.79 11 10

10x8 Sarcin-Ricin; G-bulge

302

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -262.53 9 7

303

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -263.20 11 9

304

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -263.97 12 10

305

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -264.24 10 9

306

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -265.39 13 12

Pseudoknot

307

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -267.47 6 3

308

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -267.77 11 10

309

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -268.12 6 5

310

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -270.95 3 3

Single bulged G

311

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -271.13 15 13

Kink-turn related

312

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -271.52 12 9

313

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -271.62 15 14

314

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -271.91 14 12

315

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -272.43 11 8

316

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -273.81 8 6

317

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -274.03 4 3

Single stack bend

318

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -276.00 11 9

319

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -276.83 11 10

320

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -277.51 11 10

Bacterial 5S Loop E

321

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -279.15 11 8

322

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -283.72 6 5

323

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -286.18 12 10

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

324

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -286.96 4 3

Single bulged A

325

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -287.59 7 4

326

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -287.68 9 7

Kink-turn

327

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -290.89 4 3

Single bulged U

328

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -291.60 9 6

Kink-turn related

329

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -291.98 13 12

330

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -297.04 10 8

Minor groove platform related

331

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -298.23 6 4

332

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -299.91 14 12

333

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -301.88 16 14

334

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -302.63 5 3

335

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -303.13 12 10

336

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -312.32 14 13

337

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -317.63 10 8

338

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -317.72 10 8

339

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -317.98 17 15

Kink-turn

340

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -323.97 11 9

341

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -324.27 6 4

Minor groove platform

342

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -325.09 13 11

Pseudoknot

343

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -332.63 14 13

344

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -335.19 10 8

345

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -339.31 7 6

Kink-turn

346

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -341.46 10 10

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

347

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -343.39 11 9

348

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -344.06 12 11

Pseudoknot

349

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -350.00 6 3

350

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -357.56 4 4

Single bulged C

351

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -363.33 6 3

352

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -363.36 7 5

353

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -365.86 8 5

Kink-turn

354

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -366.17 16 14

355

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -372.53 11 10

356

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -375.49 14 12

357

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -375.55 15 15

358

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -377.07 11 9

359

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -380.63 12 10

360

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -381.71 6 5

Kink-turn

361

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -383.64 10 9

362

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -384.45 17 15

363

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -386.15 8 4

Symmetric double minor groove platform

364

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -387.19 13 11

365

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -387.82 18 16

366

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -388.99 10 8

Reverse kink-turn related

367

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -394.53 13 10

368

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -396.87 13 11

369

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -397.78 12 10

370

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -399.29 7 7

Kink-turn

371

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -408.62 8 7

372

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -408.85 7 6

Kink-turn

373

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -417.97 7 6

SSU/LSU pseudoknot

374

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -427.79 4 3

375

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -437.98 7 5

376

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -440.51 4 3

377

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -450.38 19 17

378

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -451.80 8 8

Kink-turn related

379

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -453.47 13 13

380

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -456.21 13 12

381

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -461.33 6 5

382

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -467.53 20 18

383

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -469.97 18 17

384

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -471.32 16 16

Kink-turn related

385

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -485.87 10 7

386

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -501.35 11 9

387

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -508.31 21 20

388

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -508.91 20 18

389

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -526.52 6 4

390

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -531.27 21 21

391

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -533.68 6 3

8-nt loop receptor

392

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -533.73 8 6

Kink-turn with non-sequential stacking

393

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -548.48 11 10

Part of G-quadruplex

394

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -560.64 10 9

395

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -564.21 6 4

396

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -575.70 10 9

397

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -584.27 10 9

398

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -597.45 13 11

399

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -628.06 7 6

400

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -640.53 7 5

Kink-turn

401

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -642.75 9 6

Major groove intercalation

402

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -700.18 12 11

403

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -720.18 17 17

404

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6198.70 7 6

405

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6960.38 6 3

C-loop with bulged stacked A's

406

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8853.48 5 3

C-loop

407

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 5 4

C-loop

408

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 21 19

409

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 20 20

410

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 6 4

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 5 3

Coloring options: