RNA 3D Hub

JAR3D Query RF03072-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03072 maps to these 6 chains: 9CXF|1|A, 9E73|1|A, 9E74|1|A, 9E75|1|A, 9ELY|1|A, 9G7C|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 11 Internal loop

Column numbers: 507-516, 602-607 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GUA-GUA--G*CGAACC   70

    
    GCA-GUA--G*CGAACC   37

    
    UUA-GUA--G*CGAAAG   31

    
    UUA-GUA--G*CAAAAG   18

    
    CUA-CUA--G*CAAACG   13

    
    UCA-GUA--G*CGAACG   11

    
    GUG-C----G*CAAC-C   11

    
    CCA-GUC--G*CAAACA   10

    
    CUA-GUA--G*CGAACG   10

    
    UGA-GUU--G*CUAAAG   10

    
    UUA-GUA--G*CGAAAA    9

    
    GUA-GUA--G*CAAACC    7

    
    CCA-GUA--G*CGAACG    6

    
    CUA-UUA--G*CAAAAC    6

    
    CCA-GUC--G*CAAACG    5

    
    CCG-GUA--G*CGAAAG    5

    
    CUA-UUA--G*CAAACG    5

    
    UUA-GUA--G*CGAACG    5

    
    CCG-GUA--G*CGGAAG    4

    
    CUA-GUA--G*CAAACG    4

    
    UUA-AUA--G*CGAACG    4

    
    UUA-GUA--G*CGAAAU    4

    
    CAA-G----G*CUGA-G    4

    
    CGA-U----G*CUUA-G    4

    
    GAA-GUA--G*CGAAAC    3

    
    UCA-GUC--G*CAAACA    3

    
    UGA-GUA--G*CGAAAA    3

    
    UGA-GUA--G*CGAAAG    3

    
    UUA-GUA--G*CGAAAC    3

    
    UUA-GUC--G*CAAACG    3

    
    CGG-C----G*CAAA-G    3

    
    CCA-AUA--G*CAACAG    2

    
    CCC-ACG--G*CCAAAG    2

    
    CCU-CCA--G*CAAAAG    2

    
    CUA-CUA--G*CGAACG    2

    
    CUA-GUA--G*CGAAAG    2

    
    CUA-GUC--G*CAAACG    2

    
    CUU-ACA--G*CGAAGG    2

    
    GCA-GUA--G*CGACAC    2

    
    GCA-GUA--G*CGAGAC    2

    
    GGA-GUA--G*CGAGAC    2

    
    GGA-GUU--G*CUAAAC    2

    
    UGA-GUA--G*CGAAAU    2

    
    UGA-UCA--G*CAAAAG    2

    
    UUA-UUA--G*CAAAAC    2

    
    U-G-GA---G*CGAAU-    2

    
    GCC-AUAAAG*UAAAGC    1

    
    GCAUGUA--G*CGAAAC    1

    
    ACA-GUA--G*CGAGAU    1

    
    CAA-CUA--G*CAAAAG    1

    
    CAA-GUC--G*CAAACG    1

    
    CCA-UCA--G*CGAGAG    1

    
    CCC-GGG--G*CCAAAG    1

    
    CGA-GUA--G*CGAAAC    1

    
    CGA-GUU--G*CUAAAG    1

    
    CGG-GUA--G*CGAGAG    1

    
    CGU-GUA--G*CGACAG    1

    
    CUA-GUA--G*CGAACC    1

    
    CUA-UUA--G*CAAGGG    1

    
    CUG-CGA--G*CGGAGG    1

    
    CUU-CCA--G*CGAAGG    1

    
    CUU-UGA--G*CAAACG    1

    
    CUU-UGA--G*CGGAGG    1

    
    G---GUCAAG*UGAGCC    1

    
    GAA-GUA--G*CAAAAC    1

    
    GCA-GUA--G*CGAAAC    1

    
    GCA-GUA--G*CGAGCC    1

    
    GCC-AUA--C*AAAAGC    1

    
    GCU-AUA--G*CAAAAC    1

    
    GGA-GUA--G*CGAAAC    1

    
    GGA-GUC--G*CCAAAC    1

    
    GGA-UUA--G*CAAAAC    1

    
    GGU-GAC--G*CAACUC    1

    
    GUA-GUA--G*CGAAAU    1

    
    GUA-GUA--G*CGAGCC    1

    
    GUA-GUA--G*CGAGGC    1

    
    GUA-UUA--G*CAAACC    1

    
    GUA-UUA--G*CAAAUC    1

    
    UCA-GGU--C*CGAAGA    1

    
    UCA-GUA--G*CAAAAU    1

    
    UCA-GUA--G*CGACAG    1

    
    UCA-GUA--G*CGAGAG    1

    
    UCA-GUC--G*CAAACG    1

    
    UCA-UUA--G*CAAAAG    1

    
    UCG-GUA--G*CGAGCG    1

    
    UGA-GUC--G*CAAAAA    1

    
    UGA-GUU--G*CUAAAA    1

    
    UGA-UUA--G*CAAAAG    1

    
    UGU-GUA--G*CGAAAG    1

    
    UUA-AUA--G*CGAACA    1

    
    UUA-AUA--G*UGAACG    1

    
    UUA-GUA--G*CAAAAA    1

    
    UUA-GUA--G*CAAACC    1

    
    UUA-GUA--G*CAAAGG    1

    
    UUA-GUA--G*CGAACC    1

    
    UUA-GUA--G*CGAGGA    1

    
    UUA-UUA--G*CAAAAG    1

    
    UUA-UUA--G*CAAGGG    1

    
    UUU-ACA--G*CGAAGA    1

    
    CCG-G-C--G*CAAAGG    1

    
    CGG-G-A--G*CGAGCG    1

    
    CUU-UG---A*CGGAGG    1

    
    G-G-GUA--G*CGAGAC    1

    
    GGC-G-A--G*CAGACC    1

    
    GGC-G-C--G*CAGACC    1

    
    GGC-GA---G*CAGACC    1

    
    GGG-G-C--G*CAAACC    1

    
    GGG-G-C--G*CUAAGC    1

    
    -CA-G-A--G*CGAACC    1

    
    UGA-UG---G*CUCA-A    1

    
    UGA-UG---G*CUCA-G    1

    
    UGG-GG---G*CUCA-A    1

    
    UUG-GC---G*CAAA-G    1

    
    --C-AGA--G*CAAAA-    1

    
    --G-GGA--G*CAAAC-    1

    
    --U-GGA--G*CAAAC-    1

    
    --U-GGA--G*CUAAG-    1

    
    C---GCA--G*CAAA-G    1

    
    CAG-C----G*CAAA-G    1

    
    CG---GC--G*CAAU-G    1

    
    CGA--U---G*CUUA-G    1

    
    CGA-C----G*CUUG-G    1

    
    CGA-U----G*CUUG-G    1

    
    CGG-A----G*CAAA-G    1

    
    CGG-C----G*CAAU-G    1

    
    G---CUA--G*CAAAC-    1

    
    GCG-A----G*CAAC-C    1

    
    GCG-A----G*CAGA-C    1

    
    GCG-C----G*CAAC-C    1

    
    GUA-AUA---*--AAGC    1

    
    GUG-A----G*CAAC-C    1

    
    GUG-C----G*CUAC-C    1

    
    U---GGC--G*CCAAG-    1

    
    CG-------G*CUAA-G    1

    
    ------G--G*CUAAG-    1

    
    Omitted sequenced and counts

    
    ----------*------   55
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

81.52 47.61 2 1

7x6 Sarcin-Ricin; G-bulge

2

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

69.75 6.12 6 2

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

3

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

64.67 2.81 5 2

Sarcin-Ricin target in LSU H95; G-bulge

4

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

59.35 -9.09 6 3

8x6 Sarcin-Ricin with inserted A; G-bulge

5

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

56.58 -17.42 5 3

8x6 Sarcin-Ricin with inserted Y; G-bulge

6

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

50.81 -24.87 3 2

8x7 Sarcin-Ricin; G-bulge

7

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

47.81 -21.69 5 4

tSH-tSH-tHH-tHS

8

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

37.64 -26.54 5 4

8x6 Sarcin-Ricin with bulged A; G-bulge

9

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

35.80 -31.73 5 3

8x7 Sarcin-Ricin; G-bulge

10

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

9.93 -72.26 6 5

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

11

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

9.01 -33.48 5 4

7x7 Sarcin-Ricin with intercalated A; G-bulge

12

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

5.77 -214.15 4 4

Triple sheared

13

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

5.08 -47.28 7 4

14

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

4.39 -146.57 7 5

cWH basepair and non-canonical AC

15

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

4.39 -190.25 8 5

Decoding loop related

16

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

3.70 -136.54 7 5

17

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

3.00 -53.17 7 5

Other IL

18

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

2.77 -64.28 7 5

Kink-turn

19

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

2.77 -267.49 8 5

Symmetric double minor groove platform

20

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

2.54 -143.27 5 4

Triple sheared

21

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

2.54 -171.27 5 4

AAA cross-strand stack

22

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

2.08 -44.87 5 3

6x5 Sarcin-Ricin; G-bulge

23

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

2.08 -63.70 6 4

Quadruple sheared

24

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

1.85 -89.14 8 5

25

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

1.62 -43.52 7 5

26

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

1.62 -171.50 4 4

Double sheared with non-canonical cWW

27

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

1.39 -81.78 7 5

28

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

1.15 -51.97 8 5

29

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

1.15 -70.66 8 6

30

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

1.15 -108.05 8 7

31

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

1.15 -177.06 6 4

32

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

1.15 -195.27 6 4

Triple non-canonical cWW pairs

33

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

1.15 -199.85 8 6

34

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

1.15 -232.74 7 5

35

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

1.15 -301.32 7 6

tSH-tHW

36

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.92 -44.01 5 4

tSH-tHW-tWH-tHS

37

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.92 -48.14 6 5

38

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.92 -149.68 6 5

39

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.69 -51.13 8 4

40

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.69 -103.00 6 4

41

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.69 -134.33 8 6

42

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.69 -174.01 4 3

5x5 Sarcin-Ricin with intercalated A; G-bulge

43

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.69 -177.06 4 3

tSH-tWH-tHS

44

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.46 -39.92 8 5

45

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.46 -52.76 7 5

46

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.46 -60.69 7 5

47

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.46 -61.04 9 6

48

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.46 -69.81 5 4

UAA/GAN related

49

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.46 -76.36 8 5

Triple sheared related

50

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.46 -81.01 8 5

UAA/GAN with extra stack

51

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.46 -87.71 10 8

52

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.46 -88.60 8 5

53

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.46 -89.17 5 5

54

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.46 -90.40 5 4

55

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.46 -198.74 6 6

56

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.46 -248.69 6 5

57

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.23 -50.20 8 6

58

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.23 -59.29 6 5

59

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.23 -59.76 8 6

tWH-tWH-tHW-tHW

60

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.23 -59.78 9 6

61

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.23 -71.88 8 5

62

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.23 -85.90 7 4

63

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.23 -87.44 9 6

64

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.23 -127.71 7 5

65

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.23 -131.43 8 6

66

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.23 -146.06 7 5

67

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.23 -146.27 8 6

68

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.23 -196.17 6 5

69

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.23 -265.31 6 4

UAA/GAN variation

70

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.23 -482.88 7 6

C-loop

71

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.23 -543.40 8 5

72

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.23 -730.09 7 5

73

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -49.60 5 3

tSH-tHH-tHS

74

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -49.68 7 6

75

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -52.56 5 3

tHW-tHW cross-strand stack

76

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -54.84 7 6

77

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -56.27 8 7

Kink-turn related

78

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -57.93 6 4

Kink-turn with embedded cWW pair

79

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -58.43 6 4

80

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -60.15 8 5

Double sheared; A in syn; two near cWW pairs

81

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -61.03 7 5

tSH-tWH-tHS-cWW

82

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -65.73 6 4

Kink-turn related

83

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -69.04 7 5

84

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -73.48 7 4

85

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -73.75 9 5

86

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -73.89 8 6

87

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -73.94 7 4

88

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -75.83 7 5

89

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -80.97 6 5

Triple sheared with non-canonical cWW

90

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -81.78 6 4

91

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -81.86 7 6

92

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -82.53 8 6

93

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -82.80 7 5

tSH-tHW-tHH-tHS

94

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -83.39 8 6

Other IL

95

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -84.93 8 6

96

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -85.53 7 4

UAA/GAN with tHH

97

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -85.58 7 6

98

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -86.98 7 5

UAA/GAN with extra cWW

99

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -88.76 7 6

100

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -92.17 7 6

Kink-turn

101

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -93.56 10 7

102

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -96.52 8 5

Kink-turn

103

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -97.96 9 7

104

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -99.36 7 5

Kink-turn related

105

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -102.17 7 6

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

106

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -104.37 10 7

Reverse turn

107

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -105.14 9 7

108

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -106.49 8 7

109

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -106.68 10 7

110

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -108.73 10 7

111

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -108.86 9 7

112

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -108.91 10 8

113

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -109.38 9 7

114

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -112.75 7 4

115

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -113.89 9 7

116

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -114.56 6 5

117

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -116.16 8 7

10x8 Sarcin-Ricin; G-bulge

118

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -116.99 11 8

119

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -119.85 7 6

Part of G-quadruplex

120

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -120.61 6 5

Kink-turn

121

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -121.41 9 7

tSH-tHW

122

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -121.86 7 5

123

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -122.20 7 5

124

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -125.54 6 5

125

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -125.59 10 7

126

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -126.27 10 8

127

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -126.57 9 6

Reverse kink-turn

128

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -126.69 8 4

129

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -126.98 9 6

Kink-turn

130

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -127.96 7 7

131

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -129.14 11 8

132

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -129.72 8 6

133

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -131.36 8 6

134

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -132.85 9 7

135

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -133.46 6 5

180 degree turn

136

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -137.90 10 9

137

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -138.77 7 6

138

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -139.10 6 5

139

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -139.77 10 6

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

140

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -139.78 9 8

141

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -140.10 7 6

142

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -140.93 12 9

143

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -141.10 10 9

144

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -142.94 9 6

Kink-turn

145

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -143.54 7 6

tSH-tHS-tHW

146

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -144.65 10 8

147

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -144.73 8 5

148

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -145.11 8 8

149

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -146.90 8 6

150

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -147.27 7 6

Kink-turn

151

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -147.33 8 6

Pseudoknot

152

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -149.37 10 7

153

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -150.35 12 9

Pseudoknot

154

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -151.59 8 6

155

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -151.92 6 5

Kink-turn from U4

156

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -152.21 9 8

157

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -153.27 11 8

158

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -153.86 11 10

159

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -154.25 9 7

Kink-turn related

160

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -154.47 5 4

UAA/GAN

161

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -155.24 8 6

Kink-turn

162

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -155.25 10 9

163

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -155.38 12 9

164

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -155.99 11 8

165

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -156.60 9 7

166

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -157.26 13 12

167

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -157.29 8 7

168

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -157.72 9 6

Minor groove platform related

169

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -158.93 8 5

170

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -159.14 9 6

171

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -160.52 7 5

Kink-turn

172

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -161.36 11 9

173

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -165.94 9 7

174

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -166.35 12 9

175

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -167.96 8 8

176

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -167.96 5 3

UAA/GAN

177

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -168.70 9 7

178

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -169.17 6 5

tSH-tHW

179

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -170.60 9 8

180

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -170.64 6 6

181

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -170.73 10 9

182

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -171.42 7 6

183

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -172.97 9 7

Vitamin B12 Aptamer

184

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -176.69 8 5

185

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -178.93 7 6

Kink-turn

186

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -183.21 12 9

187

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -183.32 11 9

188

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -184.41 11 10

189

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -184.69 8 7

Bacterial 5S Loop E

190

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -185.70 13 11

191

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -187.40 10 8

192

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -187.63 10 9

193

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -187.76 9 8

Reverse kink-turn related

194

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -190.47 10 8

195

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -192.03 6 5

Receptor of 11-nt loop-receptor motif

196

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -193.27 12 9

197

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -194.95 8 7

198

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -197.83 8 5

199

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -201.27 6 5

Receptor of 11-nt loop-receptor motif

200

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -201.35 7 6

201

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -202.39 9 8

202

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -204.16 14 11

Kink-turn related

203

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -208.52 9 6

204

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -210.33 8 7

205

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -211.31 10 9

206

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -211.66 10 9

207

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -213.84 10 9

208

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -214.34 10 8

209

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -216.36 9 7

210

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -216.45 6 5

211

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -217.41 9 7

Intercalated tWH

212

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -219.69 9 6

Kink-turn

213

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -223.32 15 12

Kink-turn

214

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -224.36 9 7

215

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -226.77 9 8

cWH basepair with bulged bases

216

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -230.72 10 9

217

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -231.88 12 11

218

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -232.09 11 8

219

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -235.25 11 9

220

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -239.11 6 4

221

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -240.00 9 6

Kink-turn related

222

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -240.72 8 7

223

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -242.21 8 6

224

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -242.78 9 8

225

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -245.38 6 5

226

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -249.06 6 6

227

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -249.14 9 6

228

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -252.25 7 5

229

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -255.45 7 5

Double sheared

230

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -256.37 13 12

231

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -256.95 13 10

Pseudoknot

232

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -264.37 11 10

233

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -264.70 9 5

Isolated non-canonical cWW pair

234

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -266.55 6 5

235

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -267.83 8 5

236

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -268.85 9 7

237

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -274.93 8 7

238

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -276.43 14 13

239

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -278.08 7 6

240

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -278.28 8 5

241

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -278.42 9 7

242

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -280.15 9 9

243

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -283.21 7 6

244

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -285.33 11 9

245

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -286.51 16 14

246

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -296.40 8 5

Tandem non-canonical cWW pairs

247

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -298.19 7 6

248

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -302.35 10 8

249

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -302.92 5 4

Double sheared

250

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -304.26 9 6

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

251

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -310.01 15 14

252

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -310.31 8 6

253

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -310.59 5 4

UAA/GAN related

254

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -320.89 9 7

255

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -324.76 8 7

256

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -328.04 17 14

257

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -330.37 6 5

258

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -332.89 8 6

259

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -333.39 8 5

Minor groove platform

260

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -340.73 7 5

261

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -341.70 8 6

262

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -342.83 8 7

263

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -346.22 9 7

Other IL

264

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -348.90 6 6

265

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -350.95 6 5

Tandem non-canonical cWW pairs

266

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -355.16 8 6

Major groove minor groove platform with intercalation; mini C-loop

267

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -357.18 7 6

268

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -357.41 9 6

269

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -359.96 6 6

270

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -362.29 9 7

271

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -363.64 7 5

272

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -366.58 10 9

273

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -366.94 7 5

274

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -373.52 5 5

275

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -374.49 16 14

276

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -377.70 6 6

277

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -389.04 7 6

278

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -392.49 7 6

279

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -393.96 7 6

280

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -399.26 19 18

281

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -401.28 7 5

282

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -403.94 6 5

283

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -406.81 7 5

284

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -409.30 7 6

Isolated non-canonical cWW pair

285

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -413.33 18 18

286

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -414.95 9 7

287

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -419.63 7 6

Tandem non-canonical cWW pairs

288

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -420.45 7 6

289

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -421.00 6 6

290

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -423.79 11 11

291

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -425.45 7 5

292

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -433.71 9 6

Multiple bulged bases

293

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -439.46 11 11

294

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -442.10 19 17

295

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -442.29 6 6

296

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -451.37 20 19

297

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -453.62 9 7

8-nt loop receptor

298

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -461.46 7 6

299

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -464.31 7 6

300

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -469.89 8 6

Isolated non-canonical cWW pair

301

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -484.78 8 6

302

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -486.75 9 7

303

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -486.77 7 7

Multiple bulged bases

304

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -487.60 8 6

305

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -494.99 10 9

306

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -509.14 7 6

Stack and bulge

307

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -512.64 7 6

Isolated non-canonical cWW pair

308

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -517.67 13 12

Kink-turn related

309

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -525.66 8 6

310

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -526.03 17 15

311

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -529.50 10 7

312

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -531.93 7 6

Decoding loop related

313

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -539.81 9 7

314

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -542.53 10 7

Reverse kink-turn related

315

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -553.11 8 6

Isolated tWW turn

316

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -558.90 7 6

Isolated cWS basepair

317

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -564.06 7 6

Isolated cWH basepair

318

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -564.06 11 9

319

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -566.01 8 7

Isolated tHS basepair with bulges

320

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -577.80 7 6

Isolated non-canonical cWW pair

321

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -581.22 7 6

Isolated non-canonical cWW contact

322

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -600.21 16 14

323

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -603.19 8 6

324

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -609.36 9 7

Minor groove platform

325

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -618.36 14 13

326

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -644.00 9 7

327

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -644.15 10 8

328

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -644.77 7 6

Multiple bulged bases

329

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -681.70 8 7

Kink-turn with non-sequential stacking

330

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -703.09 8 7

Isolated non-canonical cWW pair

331

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -731.92 9 7

332

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -757.05 7 6

333

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -1029.93 7 7

334

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -1071.77 8 6

335

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4513.25 16 15

336

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -4630.00 12 11

337

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -4674.16 13 12

Pseudoknot

338

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4719.65 12 12

339

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -4945.62 11 8

340

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5093.51 11 9

341

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5161.97 10 8

342

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5163.60 10 9

343

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5163.91 10 10

344

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5193.95 9 8

345

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5202.91 10 9

346

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5207.27 9 8

347

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5285.88 12 10

348

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5295.68 11 9

349

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5299.33 10 8

350

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5341.86 9 9

351

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5343.82 9 9

352

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5363.11 15 13

Part of G-quadruplex

353

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -5449.83 10 7

354

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5508.65 12 9

355

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -5565.05 10 9

356

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5662.93 9 6

357

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -5708.49 9 8

Minor groove platform

358

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -5824.11 10 8

359

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -5944.70 9 8

Major groove intercalation

360

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5991.60 10 8

361

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6045.75 7 5

C-loop with bulged stacked A's

362

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -6262.70 10 8

363

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -6553.82 9 7

364

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -6649.22 9 8

SSU/LSU pseudoknot

365

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6698.53 9 5

Kink-turn

366

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -6728.67 9 7

367

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -6843.79 9 7

368

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -7086.76 8 7

369

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7192.10 9 7

370

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7378.52 8 7

371

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -7432.47 8 8

Major groove platform

372

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7587.36 9 6

Major groove intercalation

373

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -7755.60 9 6

Multiple bulged bases

374

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -8603.07 10 7

Bulged stacked bases

375

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9111.60 9 7

Major groove platform with intercalated tWH

376

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9283.59 8 8

Multiple bulged bases

377

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9485.42 7 7

378

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9493.93 7 7

Major groove intercalation

379

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9498.21 7 7

Intercalated cWS

380

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9502.83 8 7

381

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9503.71 8 7

382

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9504.85 9 7

383

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9505.47 8 7

384

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9512.48 8 6

385

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9512.67 9 7

386

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9513.17 9 7

387

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9513.22 8 7

388

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9514.30 9 7

389

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9514.86 8 7

390

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9516.44 8 7

Left turn

391

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9523.04 8 7

Single stack bend

392

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9531.12 7 7

Minor groove platform, major groove intercalation

393

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9531.67 8 7

394

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9542.66 8 7

Major groove platform

395

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9546.33 7 7

Minor groove platform

396

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9555.16 8 8

Single stack bend

397

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9559.56 7 7

Major groove minor groove platform; mini C-loop

398

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9560.35 9 8

399

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9560.51 8 7

Major groove platform with intercalation

400

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9566.70 8 7

Major groove platform; stack outside cWW

401

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9572.82 8 8

Single bulged G

402

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9572.99 8 8

Single bulged U

403

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9573.08 8 7

Minor groove platform

404

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9580.41 9 8

405

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9588.22 8 8

Single bulged A

406

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9589.89 9 9

Single bulged C

407

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9598.57 9 9

408

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 8 6

C-loop

409

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 17 16

410

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 17 16

411

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Coloring options: