RNA 3D Hub

JAR3D Query RF03072-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03072 maps to these 6 chains: 9CXF|1|A, 9E73|1|A, 9E74|1|A, 9E75|1|A, 9ELY|1|A, 9G7C|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 12 Internal loop

Column numbers: 517-523, 592-601 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    UGAGA-G*CGGGUA---G   54

    
    UGGGG-A*UUAUGA---G   40

    
    UGGGG-A*UUAGGA---G   36

    
    UGGGG-G*CUAUGA---G   20

    
    UGGAGCU*AGCAAA---G   16

    
    UGAAGGU*UCCCGA---G   15

    
    UGAGGGC*GCAGA----G   10

    
    UGAGGGC*GUUGA----G   10

    
    UGAGA-A*UGGGUA---G    9

    
    UGA---G*CGA------G    9

    
    UGC---G*CAA------G    8

    
    UGAGG-A*UUAGUA---G    7

    
    UGAGG-A*UUAUUA---G    5

    
    UGGGG-C*GUAUGA---G    5

    
    UGGGG-G*CUAAGA---G    5

    
    U-----C*G--------G    5

    
    U-----G*C--------G    5

    
    UGGAGUU*AGCAAA---G    4

    
    UGAGA-G*CGAGUA---G    4

    
    UGAGG-G*CUAGUA---G    4

    
    UGGGC-G*UUAGUA---G    4

    
    UGGGG-G*CCCGAA---G    4

    
    UGGGG-G*UUAUGA---G    4

    
    UAGGG-C*GAUGA----G    4

    
    UGC---G*CCCAAA---G    4

    
    UGA---G*CAA------G    4

    
    C-----G*C--------G    4

    
    U-----G*U--------G    4

    
    UAUGGGU*AUACCA---G    3

    
    UGAUGCC*GGUUGA---G    3

    
    UGAGA-G*CGCGUA---G    3

    
    UGAGG-G*CUAUUA---G    3

    
    UGGGA-G*UCAGUA---G    3

    
    UGGGC-G*UCAGUA---G    3

    
    UGGGG-A*UUAAGA---G    3

    
    UGG---C*GCU------G    3

    
    UGAGG-A*UUUUAGUA-G    2

    
    UGGGGAC*GUUAGGA--G    2

    
    UGGGGGU*AUCCGAA--G    2

    
    UGAGGCC*GGUUGA---G    2

    
    UGAGA-G*CCGGUA---G    2

    
    UGAGA-G*UGGGUA---G    2

    
    UGAGG-G*UCCUGA---G    2

    
    UGGGG-G*CUAGUA---G    2

    
    UGAGA-G*CUUAA----G    2

    
    UGAGG-C*GA-------G    2

    
    UGC---G*CAAA-----G    2

    
    UC----C*GG-------G    2

    
    U-----G*CU-------G    2

    
    UCAGGGC*GCGGUCACGG    1

    
    UGGGCCA*CGCAGCGCCG    1

    
    CGUGG-U*AGGUAGGCUG    1

    
    UGAGAGU*ACCGGGUA-G    1

    
    CGUCGC-*-CUACAGCGG    1

    
    UGAUACC*GGUACGA--G    1

    
    UGGGGGG*CUAUGAA--G    1

    
    UAGGA-G*CUUAUAG--G    1

    
    UAUGAGC*GCCGCA---G    1

    
    UAUGAGC*GCUGCA---G    1

    
    UAUGGAU*ACACCA---G    1

    
    UGAAGUC*GGCCGA---G    1

    
    UGACGAG*CUCCGA---G    1

    
    UGAGAAG*CGGGUA---G    1

    
    UGAGAGG*CGGGUA---G    1

    
    UGAGCGC*GCGCGA---G    1

    
    UGAGGGG*CUAGUA---G    1

    
    UGAGGGU*UCCCGA---G    1

    
    UGAUAGU*UCUUGA---G    1

    
    UGAUGCC*GGCUGA---G    1

    
    UGG---C*GGAUGAGCUG    1

    
    UGGAGCU*AGUAAA---G    1

    
    UGGAGCU*GGCAAA---G    1

    
    UGAA--G*CUCCCGA--G    1

    
    UGAAG-G*UCCCGA---G    1

    
    UGAAG-G*UCUUGA---G    1

    
    UGAAG-G*UUCUGA---G    1

    
    UGAGA-G*CGGAUA---G    1

    
    UGAGG-G*CCCAAA---G    1

    
    UGAGG-G*CUAAUA---G    1

    
    UGAGG-G*UUAGUA---G    1

    
    UGAGGGU*ACAGA----G    1

    
    UGAUA-C*GUACGA---G    1

    
    UGGGA-A*CCAGUA---G    1

    
    UGGGA-G*CCAUGA---G    1

    
    UGGGC-A*UUAGUA---G    1

    
    UGGGG-A*UUACGA---G    1

    
    UGGGG-G*CUAGGA---G    1

    
    UGGGA-G*CUUGA----G    1

    
    CGUGCGG*CAA------G    1

    
    UGA---A*UCCCGA---G    1

    
    UGA---G*CCCGUA---G    1

    
    UGAA--G*C-CCGA---G    1

    
    UGGG--G*UAUGA----G    1

    
    GGAGCGC*GG-------C    1

    
    UGAA--G*CGUA-----G    1

    
    -GAAAGC*GGC-------    1

    
    UGA---G*CGAA-----G    1

    
    UGAC--G*CGA------G    1

    
    UGAGA-U*AA-------G    1

    
    UGC---G*CAGA-----G    1

    
    UAA---G*CAA------G    1

    
    UGA---A*UGA------G    1

    
    UGA---G*CAG------G    1

    
    UGA---U*AGA------G    1

    
    UGC---G*C---GG---G    1

    
    UGG---C*GCC------G    1

    
    UGGCG-A*U--------G    1

    
    UG----G*CU-------G    1

    
    Omitted sequenced and counts

    
    -------*----------   56

    
    C------*---------G    9

    
    U------*---------G    9

    
    CGGGC--*---------G    1

    
    CG-----*---------G    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

24.03 -80.10 6 5

7x6 Sarcin-Ricin; G-bulge

2

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

18.20 -101.06 8 5

8x6 Sarcin-Ricin with bulged A; G-bulge

3

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

16.99 -86.72 6 5

6x5 Sarcin-Ricin; G-bulge

4

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

16.02 -94.05 8 6

7x7 Sarcin-Ricin with intercalated A; G-bulge

5

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

7.04 -263.73 6 6

Double sheared

6

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

6.55 -187.06 6 5

7

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

6.31 -325.37 5 4

Tandem non-canonical cWW pairs

8

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

6.07 -385.22 6 5

Double sheared

9

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

4.85 -88.07 7 5

Sarcin-Ricin target in LSU H95; G-bulge

10

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

4.85 -352.78 6 5

UAA/GAN related

11

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

4.85 -7009.14 8 8

Major groove platform

12

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

4.61 -312.79 6 5

UAA/GAN variation

13

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

4.37 -308.35 7 5

14

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

4.13 -400.25 8 7

Minor groove platform

15

Motif group IL_42771.1

Basepair signature:
cWW-cWW

4.13 -8861.02 8 8

Multiple bulged bases

16

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

3.88 -90.54 8 5

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

17

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

3.88 -8928.61 8.5 7

18

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

3.88 -8959.12 8 7

Intercalated cWS

19

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

3.64 -301.45 8 6

Tandem non-canonical cWW pairs

20

Motif group IL_84476.1

Basepair signature:
cWW-cWW

3.40 -710.31 8 7

Multiple bulged bases

21

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

2.91 -80.79 8 5

8x6 Sarcin-Ricin with inserted A; G-bulge

22

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

2.91 -219.88 8 7

23

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

2.91 -231.37 7 5

24

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

2.91 -239.35 9 6

Decoding loop related

25

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

2.67 -387.73 8 6

26

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

1.70 -114.14 8 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

27

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

1.70 -275.09 7 5

28

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

1.70 -703.83 8 7

Stack and bulge

29

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

1.46 -151.29 8 6

Reverse kink-turn

30

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

1.46 -8933.44 8 7

Major groove intercalation

31

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

1.46 -8966.83 8 7

32

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

1.46 -8990.63 8 8

Single stack bend

33

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

1.46 -9004.60 9 8

34

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

1.46 -9005.71 9 8

Single stack bend

35

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

1.46 -9017.09 8 8

Single bulged G

36

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

1.46 -9033.96 8 8

Single bulged U

37

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

1.21 -110.45 7 5

38

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

1.21 -125.89 8 6

39

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

1.21 -274.65 6 6

40

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

1.21 -302.64 7 6

41

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

1.21 -434.56 8 7

42

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.97 -80.06 8 5

43

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.97 -90.19 8 6

44

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.97 -160.46 7 6

45

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.97 -9036.73 8 8

Single bulged A

46

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.97 -9050.54 9 9

Single bulged C

47

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.73 -79.28 7 4

Double sheared; A in syn; two near cWW pairs

48

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.73 -89.85 6 5

49

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.73 -203.54 8 6

50

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.73 -206.11 9 6

51

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.73 -231.14 7 5

52

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.73 -236.08 7 6

Receptor of 11-nt loop-receptor motif

53

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.73 -252.61 7 6

Receptor of 11-nt loop-receptor motif

54

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.73 -383.90 7 5

55

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.73 -419.34 7 6

Isolated non-canonical cWW pair

56

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.73 -457.67 8 6

Isolated non-canonical cWW pair

57

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.73 -584.52 8 7

Isolated non-canonical cWW pair

58

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.73 -593.92 7 6

Isolated non-canonical cWW pair

59

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.73 -613.99 7 6

Isolated non-canonical cWW contact

60

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.73 -870.88 8 8

Isolated non-canonical cWW pair

61

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.49 -96.25 6 5

8x7 Sarcin-Ricin; G-bulge

62

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.49 -103.39 7 6

tSH-tHW-tWH-tHS

63

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.49 -116.68 6 4

UAA/GAN with extra cWW

64

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.49 -140.37 9 7

65

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.49 -168.70 8 7

66

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.49 -248.04 9 6

67

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.49 -275.77 8 6

68

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.49 -453.65 8 6

69

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.49 -783.54 9 9

70

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.49 -2941.14 8 7

Multiple bulged bases

71

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.49 -8960.19 8 7

Major groove platform

72

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.49 -8972.58 8 6

73

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.49 -8977.68 9 7

74

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.49 -8994.44 8 8

Minor groove platform

75

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.24 -103.16 6 5

Kink-turn

76

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.24 -114.77 5 4

77

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.24 -124.44 9 6

Triple sheared related

78

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.24 -135.65 10 6

79

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.24 -138.32 7 5

tSH-tHH-tHS

80

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.24 -153.77 7 6

81

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.24 -179.20 6 5

Triple sheared

82

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.24 -180.39 5 4

AAA cross-strand stack

83

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.24 -189.86 7 6

84

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.24 -206.09 7 5

85

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.24 -220.74 6 4

UAA/GAN

86

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.24 -237.66 5 4

tSH-tWH-tHS

87

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.24 -258.83 6 5

Triple non-canonical cWW pairs

88

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.24 -266.98 5 5

Triple sheared

89

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.24 -275.09 7 5

90

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.24 -283.25 6 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

91

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.24 -478.55 8 7

92

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.24 -648.06 8 7

Isolated cWS basepair

93

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.24 -652.73 7 7

Isolated tWW turn

94

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.24 -658.94 7 7

Isolated cWH basepair

95

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -80.39 8 5

96

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -81.30 7 6

97

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -84.40 7 5

98

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -85.49 8 6

99

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -86.62 8 6

100

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -91.61 7 5

101

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -94.58 7 5

tSH-tWH-tHS-cWW

102

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -94.63 8 6

103

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -96.41 9 6

104

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -98.15 10 6

105

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -98.95 8 5

106

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -99.85 7 5

107

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -99.99 9 8

Kink-turn related

108

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -102.46 7 4

UAA/GAN related

109

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -102.52 7 5

UAA/GAN with extra stack

110

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -102.86 8 7

111

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -103.03 7 5

Other IL

112

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -104.98 9 7

113

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -106.91 10.5 7

114

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -109.67 7 5

115

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -111.15 8 5

tSH-tSH-tHH-tHS

116

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -111.86 6 5

Kink-turn

117

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -112.60 8 6

118

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -116.55 7 5

Kink-turn with embedded cWW pair

119

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -118.70 9 7

120

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -119.59 8 6

121

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -119.83 8 5

Part of G-quadruplex

122

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -119.93 10 8

tWH-tWH-tHW-tHW

123

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -121.14 9 7

124

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -123.09 6 4

125

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -123.53 7 6

Kink-turn related

126

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -125.12 7 5.5

8x7 Sarcin-Ricin; G-bulge

127

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -125.47 9 8

128

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -128.44 9 7

129

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -128.91 8 7

130

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -130.10 10 7

131

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -130.91 9 8

132

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -131.00 5 4

Kink-turn

133

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -131.02 9 7

134

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -131.80 9 6

135

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -132.74 9 6

136

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -133.09 8 6

Triple sheared with non-canonical cWW

137

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -133.51 7 7

tHW-tHW cross-strand stack

138

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -133.51 7 5

139

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -133.62 8 4

UAA/GAN with tHH

140

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -134.73 8 6

141

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -134.73 9 7

142

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -135.65 10 8

143

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -136.28 7 6

144

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -137.81 8 5

145

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -138.46 9 7

146

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -138.57 9 8

147

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -139.26 6 5

Quadruple sheared

148

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -139.75 10 9

149

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -140.78 9 6

150

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -141.33 9 7

151

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -141.97 7 7

152

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -142.12 9 7

153

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -142.47 8 7

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

154

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -142.93 11 7

Reverse turn

155

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -143.22 10 7

156

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -143.92 9 6

157

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -144.80 10 8

158

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -144.95 8 7

159

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -146.81 11 8

160

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -147.17 9 7

Other IL

161

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -148.25 9 7

162

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -150.07 7 6

163

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -152.41 10 7

Kink-turn

164

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -153.73 10 8

165

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -154.30 10 8

166

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -154.48 10 8

167

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -156.36 7 6

tSH-tHS-tHW

168

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -157.03 11 9

169

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -158.82 8 6

Kink-turn

170

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -159.58 10 8

tSH-tHW-tHH-tHS

171

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -160.93 10 6

172

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -162.00 9 7

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

173

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -163.46 8 8

Kink-turn related

174

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -164.45 10 8

175

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -164.78 11 11

176

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -164.96 7 6

177

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -165.44 6 5

Kink-turn from U4

178

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -165.95 9 7

tSH-tHW

179

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -166.27 12 9

Pseudoknot

180

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -167.06 8 7

181

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -168.69 7 4

Kink-turn

182

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -170.43 8 7

183

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -173.84 10 7

184

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -173.87 8 6

Pseudoknot

185

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -174.70 7 6

186

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -174.81 9 7

187

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -176.09 12 9

188

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -176.94 8 6

189

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -177.45 8 7

190

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -177.66 8 7

Kink-turn related

191

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -179.06 9 7

Kink-turn

192

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -179.40 12 9

193

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -180.74 9 8

194

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -183.27 7 6

Kink-turn

195

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -183.65 9 6

196

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -184.72 9 7

197

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -185.41 9 6

198

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -185.81 12 11

199

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -186.11 11 9

10x8 Sarcin-Ricin; G-bulge

200

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -186.45 9 7

201

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -186.51 11 8

202

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -186.74 9 6

203

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -186.90 6 5

tSH-tHW

204

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -187.07 8 6

205

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -187.25 10 9

206

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -187.48 9 8

207

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -187.88 11 8

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

208

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -187.92 11 9

209

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -188.82 12 9

210

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -190.73 9 6

Intercalated tWH

211

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -193.90 9 7

212

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -194.18 9 6

213

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -194.25 8 6

Kink-turn

214

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -194.32 9 8

215

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -196.28 9 8

216

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -196.85 8 7

217

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -197.59 7 6

218

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -198.01 12 10

219

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -198.91 11 9

220

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -200.66 9 7

Vitamin B12 Aptamer

221

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -201.70 11 10

222

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -202.02 7 6

cWH basepair and non-canonical AC

223

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -203.23 9 6

224

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -204.31 10 9

225

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -204.56 12 10

226

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -206.20 15 14

227

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -207.77 13 11

228

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -208.38 8 6

180 degree turn

229

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -209.06 10 8

230

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -210.52 11 7

Minor groove platform related

231

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -210.57 9 8

232

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -212.12 10 9

233

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -212.79 11 10

234

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -214.89 10 9

235

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -217.28 13 11

Kink-turn related

236

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -217.75 9 8

237

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -219.15 9 8

Bacterial 5S Loop E

238

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -220.04 10 10

239

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -222.43 10 9

Reverse kink-turn related

240

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -227.32 9 6

241

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -231.71 7 6

242

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -232.44 8 6

243

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -234.53 8 7

Kink-turn

244

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -235.09 12 9

245

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -235.93 10 7

246

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -236.68 15 12

Kink-turn

247

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -236.72 6 5

Double sheared with non-canonical cWW

248

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -237.20 12 11

249

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -241.52 8 7

250

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -244.98 11 9

251

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -248.10 6 5

UAA/GAN

252

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -249.35 13 10

253

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -249.75 10 8

254

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -251.08 9 7

255

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -256.10 7 6

256

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -262.93 11 9

257

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -264.07 9 8

cWH basepair with bulged bases

258

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -267.82 8 6

259

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -268.79 11 10

260

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -269.22 9 7

Kink-turn

261

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -270.38 8 5

Isolated non-canonical cWW pair

262

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -273.34 11 9

263

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -275.06 9 7

264

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -278.52 9 7

265

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -289.43 9 6

266

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -289.92 12 10

267

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -290.03 8 6

268

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -292.00 14 12

Pseudoknot

269

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -294.20 14 11

270

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -296.58 15 13

271

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -297.11 7 6

272

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -300.19 11 9

273

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -305.49 8 7

274

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -311.03 16 14

275

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -315.55 8 6

276

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -319.80 7 5

tSH-tHW

277

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -322.47 10 7

278

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -332.69 8 7

279

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -333.48 9 7

280

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -336.96 16 14

281

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -337.19 12 9

282

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -339.44 8 6

283

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -340.30 10 7

284

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -341.42 17 14

285

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -344.56 9 7

286

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -345.35 12 10

287

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -346.49 8 7

288

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -351.36 8 7

Kink-turn with non-sequential stacking

289

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -354.80 7 6

290

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -357.49 9 7

291

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -359.38 9 7

292

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -362.39 11 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

293

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -371.80 7 5

294

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -376.24 15 13

295

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -383.28 9 7

Other IL

296

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -388.62 6 6

297

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -394.98 8 6

298

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -398.62 8 7

299

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -412.65 8 6

300

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -417.56 7 5

301

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -419.45 8 6

302

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -421.92 8 7

303

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -427.19 7 6

304

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -430.55 7 6

305

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -431.14 8 6

306

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -433.79 18 17

307

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -433.94 8 6

Major groove minor groove platform with intercalation; mini C-loop

308

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -433.97 20 18

309

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -441.71 8 6

310

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -444.17 8 7

311

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -451.68 8 7

Tandem non-canonical cWW pairs

312

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -453.55 7 6

313

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -464.24 13 11

314

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -465.21 13 11

315

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -477.72 20 18

316

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -484.16 20 19

317

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -501.94 9 8

Symmetric double minor groove platform

318

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -504.19 9 7

Reverse kink-turn related

319

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -511.50 15 13

320

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -515.09 8 7

321

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -518.65 8 6

322

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -524.28 15 13

Kink-turn related

323

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -544.10 8 6

Decoding loop related

324

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -546.87 10 8

325

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -550.05 8 7

326

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -565.02 12 10.5

327

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -623.43 12 10.5

328

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -628.47 8 6

329

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -653.63 7 7

Isolated tHS basepair with bulges

330

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -707.24 14 13

331

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -728.79 10 7

332

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -738.12 15 13

333

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -1199.46 9 7

334

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -1458.16 10 7

Kink-turn related

335

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -1539.21 9 8

336

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -1961.96 8 7

337

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -2039.32 8.5 7

338

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -2052.96 8 6

339

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -2095.24 10 8

8-nt loop receptor

340

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -2155.84 8 6

341

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -2398.91 8 6

342

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -2432.89 8 6

Multiple bulged bases

343

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -2519.11 9 7

344

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -2611.78 8 7

345

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -2630.37 8 6

346

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -2644.28 9 8

347

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -2942.39 8 6.5

348

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -3021.84 9 7

Minor groove platform

349

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -3702.61 8 7

C-loop

350

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4008.13 15 13

351

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4174.82 13 11

352

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -4368.74 13 10

353

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -4404.70 9 9

354

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -4411.81 12 12

Pseudoknot

355

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -4454.53 11 10

356

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -4457.40 11 9

357

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -4532.93 8 6

358

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -4533.90 10 8

359

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -4534.81 10 9

360

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -4671.74 10 9

361

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -4673.85 10 9

362

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -4679.37 11 8

363

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -4686.71 13 10

Part of G-quadruplex

364

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4704.47 13 11

365

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -4813.13 11 9

366

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -4865.03 10 8

367

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -4922.26 11 9

368

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5003.66 9 8

369

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5118.17 10 8

370

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -5151.36 9 7

371

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5207.93 12 10

372

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -5268.61 11 9

373

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5375.73 10 7

374

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -5393.54 11 9

Minor groove platform

375

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -5504.15 10 8

376

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -5575.25 8 6

Kink-turn

377

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -5597.47 9 8

Major groove intercalation

378

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5898.91 8 7

379

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -6182.62 8 7

380

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -6268.44 8 7

SSU/LSU pseudoknot

381

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -6312.63 8 7

382

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -6327.91 9 7

383

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -6424.48 8 7

384

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6608.20 10 7

Major groove intercalation

385

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6642.03 9 6

C-loop with bulged stacked A's

386

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -6687.32 8 7

387

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -6950.79 8 7

388

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -7306.45 7 6

Multiple bulged bases

389

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -8111.91 9 8

Bulged stacked bases

390

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -8574.14 8 7

Major groove platform with intercalated tWH

391

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -8949.01 8 7

392

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -8959.78 10 8

393

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -8961.74 9 7

394

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -8961.76 9 7

395

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -8964.29 9 7

396

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -8964.97 8 7

Left turn

397

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -8966.64 9 7

398

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -8969.24 8 7

Minor groove platform

399

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -8975.85 9 7

Major groove minor groove platform; mini C-loop

400

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -8975.89 8 7

Minor groove platform, major groove intercalation

401

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -8978.37 10 8

402

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -8983.30 8 7

403

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9021.19 7 7

Major groove platform with intercalation

404

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9038.17 8 7

Major groove platform; stack outside cWW

405

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9145.54 10 8

406

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9173.86 10 9

407

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 8 7

C-loop

408

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 18 16

409

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 15 14

410

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 17 17

411

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Coloring options: