RNA 3D Hub

JAR3D Query RF03072-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03072 maps to these 6 chains: 9CXF|1|A, 9E73|1|A, 9E74|1|A, 9E75|1|A, 9ELY|1|A, 9G7C|1|A See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 2 Internal loop

Column numbers: 125-138, 296-297 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    AGGCA-AAACGAUC*GU   79

    
    AGGCG-AAACGAUC*GU   69

    
    GGUCA-AAGGGAUC*GC   51

    
    AGGCA-AAGCGAUC*GU   24

    
    GGUCA-AAAGGAUC*GC   19

    
    GGGCA-AAGGGAUC*GC   17

    
    GGGCA-AAAGGAUC*GC   16

    
    AGCCA-AAACGAUC*GU   15

    
    AGGCG-AAGCGAUC*GU   14

    
    AGGCG-AAACGGCC*GU   11

    
    GGGCG-AAAGGAUC*GC   11

    
    AGGCA-AAGGGAUC*GU    9

    
    AGGCC-AAGCGGUC*GU    9

    
    AGGCG-AAACGACC*GU    9

    
    AGGCA-AAGCGGUC*GU    8

    
    AGGCG-AAACGGUC*GU    8

    
    GGGCA-AAACGAUC*GC    8

    
    AGACC-AAGCGAUC*GU    7

    
    AGCCA-AAGCGAUC*GU    7

    
    GGUCG-AAAGGAUC*GC    7

    
    AGGCG-AAGGGAUC*GU    6

    
    GGUCG-AAAGGACC*GC    5

    
    AGACG-AAGCGAUC*GU    4

    
    AGGCA-AAACGGUC*GU    4

    
    AGGCA-AAAGGAUC*GU    4

    
    GGGCA-AAAGGUCC*GC    4

    
    GGGCA-AAGGGACC*GC    4

    
    AGGCG-AAGGAAUC*GU    3

    
    GGGCA-AAGCGGUC*GC    3

    
    GGGCG-AAACGACC*GC    3

    
    AGGCA-AAGGAAUC*GU    2

    
    AGGCG-AAGCGGUC*GU    2

    
    GGCCA-AAGGGAUC*GC    2

    
    GGGCA-AAAGGACC*GC    2

    
    GGGCA-AAGGGUCC*GC    2

    
    GGGCG-AAGCGAUC*GG    2

    
    GGUCA-AAAGGGUC*GC    2

    
    GGUCG-AAGGGAUC*GC    2

    
    AGCCAAAAACGAUC*GU    1

    
    AGGCAAAAACGAUC*GU    1

    
    AGGCA-AAACAAUC*GU    1

    
    AGGCA-AAACGACC*GU    1

    
    AGGCA-AAACGGCC*GU    1

    
    AGGCA-AAAGGACC*GU    1

    
    AGGCA-AAGCAAUC*GU    1

    
    AGGCA-AAGGGACC*GU    1

    
    AGGCC-AAACGAUC*GU    1

    
    AGGCC-AAACGGUC*GU    1

    
    AGGCG-AAAGGAUC*GU    1

    
    AGGCU-AAACGACC*GU    1

    
    CGGCC-AAGCGGUC*GU    1

    
    GCGCG-AAACGACC*GC    1

    
    GCGCG-AAACGCUC*GC    1

    
    GGCCA-AAAGGAUC*GC    1

    
    GGCCA-AAGGGACC*GC    1

    
    GGCCG-AAAGGACC*GC    1

    
    GGCCG-AAAGGAUC*GC    1

    
    GGCCG-AAUGGACC*GC    1

    
    GGGCA-AAACGACC*GC    1

    
    GGGCA-AAACGGUC*GC    1

    
    GGGCA-AAGCGAUC*GC    1

    
    GGGCA-AAGCGAUC*GG    1

    
    GGGCA-AAGGGCUC*GC    1

    
    GGGCG-AAACGAUC*GC    1

    
    GGGCG-AAAGGUCC*GC    1

    
    GGGCG-AAGCGAUC*GC    1

    
    GGGCG-AAGGGAUC*GC    1

    
    GGGCG-AAGGGUCC*GC    1

    
    GGUCA-AAGGGACC*GC    1

    
    GGUCG-AAGGAGUC*GC    1

    
    GGUCU-AAAGGGUC*GC    1

    
    AGC---AAACGAUC*GU    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -100.74 13 9

Pseudoknot

2

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -102.70 8 5

3

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -103.83 8 5

4

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -111.41 8 6

5

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -114.86 10 7

6

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -116.48 10 7

7

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -119.31 9 5

8

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -124.52 11 8

9

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -125.01 9 7

Part of G-quadruplex

10

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -140.12 9 6

11

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -142.14 11 7

12

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -146.83 9 7

13

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -147.44 12 11

14

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -151.17 9 7

15

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -151.40 13 11

Kink-turn related

16

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -155.12 9 5

17

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -158.51 7 6

Minor groove platform

18

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -160.28 10 8

19

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -167.23 8 6

20

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -171.06 12 9

21

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -175.18 13 10

22

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -182.10 8 7

23

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -184.07 11 9

24

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -185.58 8 5

25

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -186.88 9 7

26

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -192.38 8 8

27

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -195.00 9 7

28

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -200.66 12 9

29

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -201.33 15 13

Kink-turn

30

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -201.49 12 10

Pseudoknot

31

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -217.06 11 8

32

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -219.84 10 7

33

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -221.00 14 13

34

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -221.99 13 9

Reverse kink-turn related

35

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -227.65 15 12

36

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -230.30 10 7

37

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -230.46 14 10

38

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -230.82 13 12

39

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -238.06 10 8

40

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -240.40 13 9

41

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -244.44 10 9

42

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -263.33 12 10

43

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -272.44 9 7

44

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -273.91 17 15

45

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -274.84 14 13

46

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -275.89 9 7

Vitamin B12 Aptamer

47

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -278.23 7 6

48

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -280.80 16 16

49

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -281.30 9 8

50

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -285.09 15 14

51

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -287.36 17 14

52

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -287.79 16 14

53

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -289.04 12 10

54

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -294.39 10 8

55

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -295.87 10 9

56

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -297.07 17 15

57

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -299.25 9 8

58

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -302.61 11 9

59

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -305.07 8 7

Kink-turn related

60

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -305.22 13 13

Pseudoknot

61

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -310.83 12 9

62

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -313.96 14 12

63

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -318.41 10 9

cWH basepair with bulged bases

64

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -319.52 12 11

65

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -320.96 13 11

66

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -321.37 11 10

67

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -322.69 10 9

68

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -330.66 9 8

69

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -333.17 12 8

70

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -333.22 14 11

71

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -339.97 10 7

72

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -340.94 20 17

73

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -343.37 12 9

Major groove intercalation

74

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -351.22 12 11

Reverse turn

75

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -352.06 11 9

76

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -353.49 8 6

SSU/LSU pseudoknot

77

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -362.13 11 9

78

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -367.49 8 7

79

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -370.51 10 9

80

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -371.34 14 14

81

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -372.93 14 12

82

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -373.11 11 10

83

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -374.09 10 8

84

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -375.10 13 10

85

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -385.47 14 13

86

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -394.67 10 7

87

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -400.44 13 10

88

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -405.45 9 9

89

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -407.85 12 10

Pseudoknot

90

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -410.34 11 9

91

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -411.88 14 11

92

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -412.11 14 13

93

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -414.11 10 9

tSH-tHW

94

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -415.02 11 9

Kink-turn

95

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -416.37 9 8

96

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -416.72 12 9

97

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -419.72 11 10

98

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -422.05 14 13

99

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -425.02 21 19

100

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -428.54 16 15

101

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -429.58 11 9

102

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -429.99 12 11

103

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -430.36 14 11

104

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -431.85 11 10

105

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -437.75 14 13

106

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -437.97 13 12

107

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -438.58 11 9

108

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -439.47 20 18

109

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -442.98 13 12

110

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -446.03 13 12

111

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -447.80 12 10

112

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -455.98 11 10

113

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -456.22 13 11

114

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -456.51 11 10

Intercalated tWH

115

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -456.78 11 9

Kink-turn

116

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -458.52 9 8

117

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -458.60 16 14

118

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -458.63 10 9

UAA/GAN related

119

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -466.79 13 12

120

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -466.88 11 9

121

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -475.70 14 13

122

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -476.57 11 10

123

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -478.90 11 9

Reverse kink-turn

124

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -484.34 12 11

125

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -484.72 10 9

126

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -485.64 13 12

8x6 Sarcin-Ricin with inserted A; G-bulge

127

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -493.20 13 11

128

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -495.43 15 14

129

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -498.54 12 11

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

130

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -500.92 11 9

131

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -501.35 13 12

132

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -502.71 10 9

133

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -505.08 9 8

134

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -509.39 15 12

135

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -512.10 11 10

136

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -514.67 13 11

137

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -517.49 12 9

138

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -517.67 9 8

139

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -518.11 11 9

140

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -518.38 11 8

141

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -518.70 12 8

142

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -521.64 12 10

Kink-turn with embedded cWW pair

143

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -523.82 13 12

Sarcin-Ricin target in LSU H95; G-bulge

144

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -525.12 12 11

145

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -526.98 10 8

146

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -527.76 10 8

147

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -528.69 14 11

148

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -539.61 14 13

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

149

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -547.90 14 13

10x8 Sarcin-Ricin; G-bulge

150

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -585.45 10 9

180 degree turn

151

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -597.45 12 9

152

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -603.15 13 13

153

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -608.92 9 9

Isolated non-canonical cWW pair

154

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -638.82 9 8

155

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -665.49 10 9

156

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -670.36 11 10

157

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -680.13 10 8

Left turn

158

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -699.02 10 8

159

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -717.55 12 12

160

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -732.87 10 8

161

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -790.65 10 8

Major groove minor groove platform with intercalation; mini C-loop

162

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -879.92 9 9

163

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4296.35 10 9

164

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -4316.52 14 13

165

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -4347.97 15 14

166

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -4371.79 12 11

167

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -4376.11 17 14.5

168

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -4449.36 17 15

Kink-turn related

169

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -4450.99 12 12

170

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4484.33 22 22

171

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -4535.81 20 19

172

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4548.54 19 18

173

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -4800.31 14 13

tSH-tHW-tHH-tHS

174

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4848.45 21 21

175

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -4849.23 12 12

176

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -4934.90 13 12

177

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -4952.21 16 14

178

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -4954.37 18 16

179

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -5034.13 16 14

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

180

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5087.52 14 12

181

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -5112.87 18 16

182

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -5138.77 12 10

183

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -5140.44 15 12

8x7 Sarcin-Ricin; G-bulge

184

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -5141.85 13 12

Minor groove platform related

185

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -5144.28 13 12

186

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5172.51 14 13

Bacterial 5S Loop E

187

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -5188.26 11 10

Reverse kink-turn related

188

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -5209.38 9 9

tHW-tHW cross-strand stack

189

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -5209.77 9 8

tSH-tHS-tHW

190

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5210.07 11 8

191

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -5245.73 15 12

192

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -5246.07 13 12

193

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5250.91 12 11

tWH-tWH-tHW-tHW

194

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -5255.44 11 11

Kink-turn related

195

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -5260.09 12 11

8x6 Sarcin-Ricin with inserted Y; G-bulge

196

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -5277.20 14 12

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

197

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -5278.22 14 12

198

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -5293.79 13 11

8x6 Sarcin-Ricin with bulged A; G-bulge

199

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -5295.08 11 10

Kink-turn

200

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -5297.68 13 11

Kink-turn

201

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -5298.02 14 12

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

202

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -5298.40 11 9

Kink-turn

203

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5298.49 12 11

Kink-turn related

204

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -5298.78 14 12

205

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5300.01 12 11

Other IL

206

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -5301.79 13 12

7x7 Sarcin-Ricin with intercalated A; G-bulge

207

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -5308.48 13 12

208

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -5324.71 12 12

Triple sheared with non-canonical cWW

209

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5325.32 14 13

210

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -5331.01 13 12

211

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5334.17 12 12

8x7 Sarcin-Ricin; G-bulge

212

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -5336.38 12 12

213

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5337.80 10 9

Kink-turn with non-sequential stacking

214

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -5349.40 13 12

215

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5367.86 13 12

216

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -5377.28 14 14

Kink-turn

217

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -5379.20 15 13

218

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -5386.60 13 11

Kink-turn

219

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -5391.31 12 12

220

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -5418.74 15 14

221

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5439.68 21 21

222

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -5455.24 14 12

Kink-turn

223

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -5463.88 11 11

224

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5482.22 19 18

225

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5483.84 19 18

226

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -5495.44 15 15

227

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -5506.67 12 11

Part of G-quadruplex

228

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -5559.05 12 10

229

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -5561.27 12 12

230

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -5570.47 13 10

Kink-turn related

231

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -5591.21 11 11

tSH-tSH-tHH-tHS

232

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -5642.79 13 11

233

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -5656.47 11 10

Kink-turn

234

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5682.17 11 10

235

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -5689.30 12 12

7x6 Sarcin-Ricin; G-bulge

236

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -5714.23 10 9

237

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -5727.93 10 8

Kink-turn

238

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -5745.14 9 9

Kink-turn

239

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -5776.55 13 12

240

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5830.88 11 11

241

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -5872.14 13 11

242

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5876.11 10 8

243

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5888.19 11 9

244

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -5898.56 9 9

245

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -5905.87 11 11

Triple sheared related

246

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -5911.07 13 11

Kink-turn related

247

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5932.98 11 11

Double sheared; A in syn; two near cWW pairs

248

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5944.50 13 11

tSH-tWH-tHS-cWW

249

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -5968.91 11 10

UAA/GAN with tHH

250

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -5974.13 14 12

251

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -6040.78 13 11

6x5 Sarcin-Ricin; G-bulge

252

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -6076.77 12 11

253

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -6129.54 12 10

UAA/GAN with extra stack

254

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -6170.24 12 10

255

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -6192.50 12 12

256

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -6202.42 11 9

Kink-turn from U4

257

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -6213.67 13 11

258

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6258.38 13 11

tSH-tHW-tWH-tHS

259

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -6288.39 11 10

260

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6294.42 12 12

261

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6360.69 12 12

262

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -6380.81 14 10

263

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6412.86 12 11

Receptor of 11-nt loop-receptor motif

264

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -6414.33 12 11

Other IL

265

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -6506.95 12 11

Receptor of 11-nt loop-receptor motif

266

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -6538.85 14 10

267

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -6548.26 12 12

268

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6591.74 12 10

269

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -6604.09 12 11

270

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -6628.54 11 11

UAA/GAN with extra cWW

271

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -6693.96 12 11

272

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -6718.93 13 12

273

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -6748.84 13 12

274

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -6892.85 11 9

tSH-tHW

275

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -6903.71 13 11

276

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -6928.85 12 11

tSH-tHH-tHS

277

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6980.74 11 11

278

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -7023.12 12 11

279

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -7029.52 16 15

Kink-turn

280

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -7050.03 12 11

Quadruple sheared

281

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7093.71 11 10

C-loop with bulged stacked A's

282

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7120.97 10 7

283

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -7182.84 13 10

284

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -7201.96 11 9

285

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7203.88 12 12

Symmetric double minor groove platform

286

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -7222.04 13 11

AAA cross-strand stack

287

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -7274.59 8 8

288

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7296.61 10 8

289

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7353.34 10 10

8-nt loop receptor

290

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7378.96 10 8

291

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -7487.04 12 10

292

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7574.17 10 9

293

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -7618.82 10 10

Decoding loop related

294

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7688.16 8 7

Major groove intercalation

295

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -7784.40 11 9

296

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -7864.86 10 10

297

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7869.57 13 11

Triple sheared

298

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -7968.19 12 11

cWH basepair and non-canonical AC

299

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8109.34 12 9

300

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -8182.62 11 10

301

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -8200.26 12 11

Tandem non-canonical cWW pairs

302

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8290.23 10 8

303

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -8305.13 13 11

UAA/GAN

304

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -8358.82 12 10

305

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8367.73 12 9

306

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8387.50 15 11

307

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8412.99 13 10

Major groove platform

308

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -8437.78 11 11

UAA/GAN

309

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -8451.40 13 11

310

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8478.32 14 12

311

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -8581.39 12 10

312

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8641.77 12 10

313

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -8722.59 12 11

Double sheared with non-canonical cWW

314

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -8775.55 14 12

Double sheared

315

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8797.39 11 9

Multiple bulged bases

316

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8838.27 13 11

Other IL

317

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8840.35 10 9

C-loop

318

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8850.02 13 12

319

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8864.29 11 11

tSH-tWH-tHS

320

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -8903.40 11 11

5x5 Sarcin-Ricin with intercalated A; G-bulge

321

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -9072.11 11 9

322

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9275.33 10 9

323

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9360.10 12 10

324

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -9426.05 11 9

325

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -9447.55 11 11

Triple non-canonical cWW pairs

326

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -9448.39 11 10

tSH-tHW

327

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -9516.60 11 11

328

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -9544.57 13 11

329

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9594.01 11 11

Triple sheared

330

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9688.82 10 9

331

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -9692.61 11 9

332

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9693.16 10 8

Bulged stacked bases

333

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9726.09 12 10

334

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9771.91 12 9

335

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -9813.51 13 10

336

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9860.03 10 9

Multiple bulged bases

337

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9916.28 13 11

Minor groove platform

338

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9995.72 10 8

339

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Single bulged G

340

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 8

341

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 9

Major groove platform with intercalation

342

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 9 8

C-loop

343

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 10 9

Isolated non-canonical cWW pair

344

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 12 11

345

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -9999.00 11 11

Double sheared

346

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 11 10

347

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -9999.00 11 11

Isolated cWH basepair

348

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

349

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 14 11

350

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 10 9

Major groove platform with intercalated tWH

351

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 11 10

Isolated non-canonical cWW pair

352

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 8

Minor groove platform

353

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 10

354

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 8

355

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 9

356

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -9999.00 10 10

UAA/GAN variation

357

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -9999.00 11 11

358

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

Single stack bend

359

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 11 11

Isolated non-canonical cWW pair

360

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

Single bulged A

361

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 10 10

Decoding loop related

362

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

Stack and bulge

363

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 9

364

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 10 9

365

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 12 10

366

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 10 8

367

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 14 11

Multiple bulged bases

368

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 11 10

Isolated cWS basepair

369

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 11 10

Isolated non-canonical cWW contact

370

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9999.00 11 9

371

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 10 8

Minor groove platform

372

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 9

Major groove platform

373

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -9999.00 10 10

374

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 10 9

Major groove platform; stack outside cWW

375

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -9999.00 10 9

376

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 11 9

Minor groove platform

377

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 10 10

378

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9999.00 11 8

379

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

380

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 12 11

Isolated non-canonical cWW pair

381

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -9999.00 11 10

382

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

383

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

Single bulged C

384

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 12 9

385

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 10

386

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -9999.00 10 10

387

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

Major groove intercalation

388

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 12 11

Isolated tWW turn

389

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 8

Major groove minor groove platform; mini C-loop

390

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -9999.00 11 10

391

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 9

392

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 8

393

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 9

394

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 12 11

Tandem non-canonical cWW pairs

395

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -9999.00 11 10

UAA/GAN related

396

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 9

397

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 9

Intercalated cWS

398

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 10 9

Multiple bulged bases

399

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 10 9

400

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 12 10

401

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 12 9

Multiple bulged bases

402

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -9999.00 11 10

Tandem non-canonical cWW pairs

403

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 12 10

Isolated tHS basepair with bulges

404

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 11 10

Isolated non-canonical cWW pair

405

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

Single bulged U

406

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 10 9

407

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 9

Single stack bend

408

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 10

409

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 8

Minor groove platform, major groove intercalation

410

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 13 10

411

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 11 10

Coloring options: