RNA 3D Hub

JAR3D Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 12 Internal loop

Column numbers: 119-125, 171-178 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    CU----A*CG-----G   15

    
    AA----U*UG-----U   12

    
    CGC---U*AGA-UAAG   10

    
    CG----C*GGA-UAAG   10

    
    CU----A*CA-----G    9

    
    CA----U*AAU-GUAA    7

    
    UA----A*UU-----A    7

    
    GG----C*GC-----U    6

    
    GG----C*GU-----G    6

    
    GG----U*AU-----U    6

    
    GA----A*UAU---AG    5

    
    GC----U*GU-----C    5

    
    AA----G*UG-----U    4

    
    AG----C*AG-----G    4

    
    AU----G*UG-----U    4

    
    GG----U*AC-----U    4

    
    UU----A*UG-----G    4

    
    CAC---U*AGA-UAAG    3

    
    CGC---U*GGA-UAAG    3

    
    CG----U*GAC-GUAA    3

    
    AG----C*GUG----A    3

    
    AGA---G*CG-----U    3

    
    AG----G*CU-----G    3

    
    CG----A*UU-----U    3

    
    CU----U*AG-----G    3

    
    UA----U*UU-----A    3

    
    UG----C*GA-----A    3

    
    CGC----*-GA-UAAG    2

    
    GA----U*UGU----C    2

    
    GUA---U*AA-----C    2

    
    GUA---U*AA-----U    2

    
    UC----U*GGC----A    2

    
    UG----G*CAU----A    2

    
    AA----A*UU-----U    2

    
    AC----G*UU-----U    2

    
    CA----C*GG-----U    2

    
    CG----G*CU-----G    2

    
    GA----U*UG-----A    2

    
    GG----C*GC-----C    2

    
    GU----A*UA-----U    2

    
    GU----U*AG-----C    2

    
    GU----U*AG-----G    2

    
    UA----G*CG-----G    2

    
    UC----A*AG-----G    2

    
    UC----G*UU-----C    2

    
    UG----A*UU-----A    2

    
    UG----G*CU-----G    2

    
    UG----U*UU-----A    2

    
    U-----U*AU-----A    2

    
    GUA-CAC*GAA---AC    1

    
    UGU---U*GGA-UAAG    1

    
    AUAUUAU*AU-----A    1

    
    CA----C*GGA-UAAG    1

    
    CC----U*AAG-GCAA    1

    
    CC----U*AAG-GUAA    1

    
    CG----U*AAC-GUAA    1

    
    CU----G*AGG-UAAC    1

    
    CU--UGA*ACAA---G    1

    
    UC----A*UGG-GCAA    1

    
    UC----C*AGG-UGAA    1

    
    UUC---C*GGU-GAA-    1

    
    CG----G*AAG-UA-A    1

    
    CC----U*AGA---AG    1

    
    CG----A*GGU---AG    1

    
    CG----C*GUA---AG    1

    
    CUA---A*UG----AG    1

    
    GA----A*UAC---AG    1

    
    GA----C*GAU---AC    1

    
    GA----G*UCA---AC    1

    
    GG----A*UAU---AG    1

    
    GUA---G*CG----GC    1

    
    UC----C*ACU---GA    1

    
    UU----C*ACU---GA    1

    
    UUA---A*UG----GA    1

    
    AA----G*UAA----G    1

    
    ACA---C*-A----GU    1

    
    ACG---G*UC-----G    1

    
    AG----A*UUC----U    1

    
    CAA---A*UA-----G    1

    
    CAA---U*AC-----G    1

    
    CAC---U*AA-----G    1

    
    GAU---A*UU-----U    1

    
    GG----U*UU----CU    1

    
    UAA---U*AC-----G    1

    
    -G----G*CU----AA    1

    
    AA----A*UU-----A    1

    
    AA----C*CA-----U    1

    
    AA----C*GG-----U    1

    
    AC----A*UG-----G    1

    
    AG----A*UA-----G    1

    
    AG----C*GA-----U    1

    
    AG----G*CG-----U    1

    
    AG----U*AA-----U    1

    
    AU----A*AA-----A    1

    
    AU----G*AA-----A    1

    
    AU----U*AG-----U    1

    
    AU----U*GG-----U    1

    
    CA----A*CG-----A    1

    
    CA----A*UA-----G    1

    
    CA----A*UG-----A    1

    
    CA----C*GA-----A    1

    
    CC----G*UU-----G    1

    
    CG----A*GA-----A    1

    
    CG----C*GG-----A    1

    
    CG----U*CA-----G    1

    
    CU----A*UA-----G    1

    
    CU----C*GA-----G    1

    
    CU----U*AA-----G    1

    
    GA----A*AA-----C    1

    
    GA----A*CA-----C    1

    
    GA----C*AA-----C    1

    
    GA----C*GU-----U    1

    
    GA----G*CU-----U    1

    
    GA----U*AG-----A    1

    
    GA----U*AU-----U    1

    
    GC----A*GA-----G    1

    
    GG----A*UU-----G    1

    
    GG----U*GC-----U    1

    
    GU----C*GG-----C    1

    
    GU----G*UG-----C    1

    
    UA----A*AA-----A    1

    
    UA----A*CA-----A    1

    
    UA----C*GA-----A    1

    
    UA----C*GG-----G    1

    
    UA----G*AU-----A    1

    
    UA----G*UG-----G    1

    
    UA----U*AU-----A    1

    
    UC----G*CG-----G    1

    
    UC----U*AG-----A    1

    
    UG----A*AA-----G    1

    
    UG----A*CU-----G    1

    
    UG----A*UA-----G    1

    
    UG----C*GU-----A    1

    
    UG----U*AA-----U    1

    
    UG----U*GU-----A    1

    
    UU----A*UA-----A    1

    
    UU----A*UG-----A    1

    
    UU----C*AU-----G    1

    
    UU----C*GU-----G    1

    
    UU----G*UA-----G    1

    
    UU----G*UU-----G    1

    
    -GU---U*GU------    1

    
    AA----U*UA------    1

    
    U-----G*CA-----G    1

    
    UCA----*-C-----A    1

    
    CA-----*-G-----U    1

    
    UA-----*-G-----A    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

62.07 -33.65 4 1

Isolated non-canonical cWW pair

2

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

61.72 -25.35 4 1

3

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

59.66 -40.80 3 1

Stack and bulge

4

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

58.28 -49.32 3 1

Isolated cWS basepair

5

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

57.24 -44.86 3 1

Isolated non-canonical cWW pair

6

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

54.83 -57.32 3 1

Isolated non-canonical cWW contact

7

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

47.24 -67.98 2 1

Isolated non-canonical cWW pair

8

Motif group IL_42771.1

Basepair signature:
cWW-cWW

42.07 -1671.65 4 2

Multiple bulged bases

9

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

41.03 -47.06 3 1

Isolated non-canonical cWW pair

10

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

33.45 -79.50 2 1

Isolated cWH basepair

11

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

32.07 -92.16 4 2

Isolated tHS basepair with bulges

12

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

27.59 -83.46 4 2

Isolated tWW turn

13

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

25.86 -61.78 4 2

14

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

19.66 -113.01 3 2

Isolated non-canonical cWW pair

15

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

15.17 -153.66 4 1

Major groove platform

16

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

11.38 -109.78 5 2

17

Motif group IL_83389.2

Basepair signature:
cWW-cWW

9.31 -132.78 5 2

18

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

8.62 -159.10 8 6

Vitamin B12 Aptamer

19

Motif group IL_82107.4

Basepair signature:
cWW-cWW

7.24 -145.95 3 2

Multiple bulged bases

20

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

6.21 -177.09 4 2

Intercalated cWS

21

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

5.52 -110.36 5 3

22

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

5.17 -110.72 7 5

23

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

4.83 -98.34 5 3

24

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

4.48 -97.79 5 3

25

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

3.79 -89.05 7 4

26

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

3.79 -90.68 7 5

27

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

3.79 -148.79 8 6

28

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

3.79 -172.79 7 5

Kink-turn from U4

29

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

3.45 -193.83 8 6

cWH basepair with bulged bases

30

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

3.10 -129.18 4 3

31

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

3.10 -151.49 5 3

32

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

3.10 -156.79 4 2

33

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

3.10 -195.40 6 3

34

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

3.10 -323.38 5 3

35

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

2.41 -78.93 5 3

36

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

2.41 -135.48 6 3

37

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

2.41 -162.63 4 2

38

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

2.41 -1767.08 4 2

39

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

2.07 -81.36 6 4

40

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

2.07 -115.97 6 4

41

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

2.07 -119.38 4 2

Decoding loop related

42

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

1.72 -91.53 6 3

43

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

1.72 -96.62 5 3

44

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

1.72 -132.57 5 3

45

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

1.72 -230.48 5 3

46

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

1.38 -117.11 7 5

47

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

1.38 -137.82 6 3

Multiple bulged bases

48

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

1.38 -174.32 4 2

49

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

1.38 -183.19 3 2

Major groove intercalation

50

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

1.38 -230.53 5 3

51

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

1.38 -235.26 4 3

52

Motif group IL_42626.2

Basepair signature:
cWW-cWW

1.38 -251.20 4 3

53

Motif group IL_06549.2

Basepair signature:
cWW-cWW

1.38 -331.06 6 3

54

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

1.03 -95.58 6 3

55

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

1.03 -106.97 7 4

56

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

1.03 -108.34 6 4

Isolated non-canonical cWW pair

57

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

1.03 -120.54 5 3

58

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

1.03 -134.12 7 5

59

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

1.03 -139.08 8 6

60

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

1.03 -146.13 4 2

Tandem non-canonical cWW pairs

61

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

1.03 -158.84 5 2

62

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

1.03 -167.45 5 3

tSH-tHW

63

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

1.03 -191.43 4 2

64

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

1.03 -206.18 3 1

Major groove platform

65

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

1.03 -208.30 3 1

Single stack bend

66

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

1.03 -233.47 5 2

67

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

1.03 -236.40 3 2

Single stack bend

68

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

1.03 -251.70 3 2

Single bulged G

69

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

1.03 -254.19 3 2

Minor groove platform

70

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

1.03 -1781.21 5 2

71

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

1.03 -9999.00 5 3

72

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.69 -91.57 6 3

73

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.69 -103.30 6 3

74

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.69 -104.91 7 5

75

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.69 -137.53 6 4

76

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.69 -138.89 6 3

77

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.69 -142.78 6 3

78

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.69 -158.11 4 2

79

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.69 -159.03 6 3

80

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.69 -180.94 6 3

81

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.69 -185.60 4 2

82

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.69 -245.92 4 3

83

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.69 -269.38 3 2

Single bulged U

84

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.69 -284.04 3 2

Single bulged C

85

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.69 -361.70 6 4

86

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.69 -375.09 6 4

87

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.34 -84.34 6 4

88

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.34 -90.85 5 3

89

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.34 -99.46 6 4

90

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.34 -100.17 6 4

91

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.34 -108.42 7 5

92

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.34 -114.48 6 4

Decoding loop related

93

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.34 -116.56 7 4

94

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.34 -119.22 4 2

95

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.34 -132.47 5 3

96

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.34 -139.85 5 3

97

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.34 -147.97 6 4

98

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.34 -148.55 8 6

99

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.34 -154.56 6 4

100

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.34 -162.84 5 3

101

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.34 -164.49 4 3

Double sheared

102

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.34 -176.97 6 3

103

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.34 -179.26 6 4

Minor groove platform

104

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.34 -195.77 5 3

UAA/GAN related

105

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.34 -236.94 5 3

106

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.34 -280.95 3 2

Single bulged A

107

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.34 -296.07 4 3

Major groove platform with intercalation

108

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.34 -306.62 4 2

109

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.34 -347.69 5 3

110

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.34 -355.92 4 2

Minor groove platform

111

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.34 -374.10 4 3

Major groove minor groove platform; mini C-loop

112

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.34 -1770.02 5 3

113

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.34 -8209.09 5 3

C-loop

114

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -76.15 7 5

115

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -85.41 6 4

116

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -101.31 7 5

117

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -102.33 7 5

Pseudoknot

118

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -103.84 6 4

Intercalated tWH

119

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -104.19 7 4

120

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -107.89 6 4

121

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -108.07 6 4

122

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -111.10 7 5

123

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -115.04 6 4

124

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -115.19 6 4

125

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -115.66 8 6

126

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -116.00 8 6

127

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -116.54 7 4

128

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -117.47 8 5

129

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -117.71 7 5

130

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -118.06 7 5

131

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -119.48 6 4

132

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -119.53 7 4

133

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -120.58 6 4

134

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -122.08 7 5

135

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -122.61 6 4

136

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -122.91 6 3

Double sheared

137

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -126.53 9 6

138

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -127.17 7 5

180 degree turn

139

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -127.23 8 6

140

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -127.37 6 5

141

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -128.26 5 3

Tandem non-canonical cWW pairs

142

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -129.54 9 6

143

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -129.62 8 5

tSH-tHW

144

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -130.13 8 6

145

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -131.89 8 6

146

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -132.61 6 4

147

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -135.90 7 5

148

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -136.40 6 5

149

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -136.74 8 6

Part of G-quadruplex

150

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -137.31 7 5

151

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -137.35 6 4

152

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -137.58 8 6

153

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -137.92 6 4

tSH-tHW

154

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -138.56 7 5

155

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -140.32 7 5

Kink-turn related

156

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -142.64 7 5

UAA/GAN related

157

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -142.65 9 7

158

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -143.77 5 4

159

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -144.81 8 6

UAA/GAN with extra stack

160

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -146.45 7 5

161

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -148.16 9 7

Reverse turn

162

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -148.19 8 6

163

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -148.37 7 5

Triple sheared related

164

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -149.12 6 5

165

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -149.20 9 6

166

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -149.41 8 6

Reverse kink-turn

167

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -151.11 6 3

Other IL

168

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -151.13 7 5

6x5 Sarcin-Ricin; G-bulge

169

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -153.11 9 7

Reverse kink-turn related

170

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -153.54 6 4

AAA cross-strand stack

171

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -154.83 9 6

172

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -155.97 5 3

173

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -156.06 8 6

174

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -156.34 9 7

175

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -157.92 4 2

Multiple bulged bases

176

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -159.50 7 5

177

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -160.03 8 6

178

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -160.36 7 4

cWH basepair and non-canonical AC

179

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -162.39 7 6

180

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -163.12 9 7

181

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -163.14 9 6

182

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -164.48 6 4

Receptor of 11-nt loop-receptor motif

183

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -166.56 7 6

Other IL

184

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -166.92 5 3

185

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -167.84 10 8

186

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -169.22 5 3

UAA/GAN

187

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -169.22 7 6

188

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -169.93 8 6

189

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -169.97 8 6

Kink-turn

190

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -170.70 9 7

191

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -171.83 8 5

UAA/GAN with tHH

192

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -173.43 7 6

Kink-turn with embedded cWW pair

193

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -173.57 9 7

Kink-turn related

194

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -174.32 10 8

195

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -174.91 6 3

196

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -175.04 7 5

tSH-tHH-tHS

197

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -175.19 9 7

198

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -175.29 4 3

Tandem non-canonical cWW pairs

199

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -175.58 10 8

200

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -177.71 9 7

201

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -177.98 8 6

202

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -178.81 8 7

Kink-turn

203

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -178.85 9 6

204

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -178.91 6 4

Receptor of 11-nt loop-receptor motif

205

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -180.75 8 6

Double sheared; A in syn; two near cWW pairs

206

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -182.59 9 8

207

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -183.71 9 7

208

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -184.95 8 7

tHW-tHW cross-strand stack

209

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -185.31 9 7

Other IL

210

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -186.95 8 7

Sarcin-Ricin target in LSU H95; G-bulge

211

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -187.19 9 8

212

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -187.30 9 7

213

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -187.61 10 8

214

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -190.68 6 3

215

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -191.45 10 8

216

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -192.45 9 8

217

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -192.47 10 8

218

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -193.19 9 8

219

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -195.35 5 3

UAA/GAN variation

220

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -199.64 7 5

Triple sheared

221

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -199.99 9 8

tWH-tWH-tHW-tHW

222

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -202.25 8 7

223

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -204.59 10 8

8x6 Sarcin-Ricin with inserted A; G-bulge

224

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -204.75 7 4

225

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -204.91 6 4

UAA/GAN

226

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -205.03 6 4

227

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -205.09 9 8

228

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -205.59 9 7

229

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -206.21 11 9

230

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -206.59 7.5 6

tSH-tWH-tHS-cWW

231

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -207.70 9 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

232

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -208.08 7 5

Major groove intercalation

233

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -208.37 10 8

234

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -211.17 8 7

tSH-tSH-tHH-tHS

235

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -211.55 9 8

tSH-tHS-tHW

236

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -212.66 10 8

237

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -212.92 10 9

238

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -215.51 7 6

UAA/GAN with extra cWW

239

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -216.11 6 3

Multiple bulged bases

240

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -216.59 8 7

tSH-tHW-tWH-tHS

241

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -216.70 8 6

Kink-turn related

242

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -216.95 10 9

243

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -217.13 7 7

7x6 Sarcin-Ricin; G-bulge

244

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -219.94 7 5

245

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -220.36 9 7

246

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -221.03 7 6

247

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -221.23 10 8

248

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -222.06 5 3

Major groove minor groove platform with intercalation; mini C-loop

249

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -222.76 10 8

250

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -224.51 11 10

251

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -226.83 10 9

252

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -226.91 8 7

Kink-turn

253

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -228.42 6 4

Double sheared with non-canonical cWW

254

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -228.67 10 8.5

255

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -229.40 9 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

256

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -230.48 5 4

Triple non-canonical cWW pairs

257

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -232.39 10 8

8x6 Sarcin-Ricin with inserted Y; G-bulge

258

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -232.85 6 4

259

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -234.08 6 4

260

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -234.10 9 8

Triple sheared with non-canonical cWW

261

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -234.14 11 9

262

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -234.35 6 4

tSH-tWH-tHS

263

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -234.68 10 8

8x6 Sarcin-Ricin with bulged A; G-bulge

264

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -234.92 7 5

265

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -235.53 11 9

266

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -235.56 6 3

Bulged stacked bases

267

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -236.00 8 6

Kink-turn related

268

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -238.06 10 9

269

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -239.31 9 7

270

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -240.94 9 8

Kink-turn

271

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -241.45 7 6

272

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -244.38 11 10

273

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -244.56 7.5 6

Quadruple sheared

274

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -244.62 9 6

275

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -245.51 11 9

276

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -247.66 10 8

277

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -248.94 9 7

278

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -249.74 6 4

5x5 Sarcin-Ricin with intercalated A; G-bulge

279

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -251.64 9 7

280

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -252.24 4.5 3

281

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -252.69 6 3

282

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -253.92 6 4

283

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -254.84 10 9

Kink-turn

284

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -256.84 8 7

Minor groove platform

285

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -257.44 8 6

286

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -257.46 10 9

8x7 Sarcin-Ricin; G-bulge

287

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -257.74 9 8

288

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -258.18 10 9

Kink-turn

289

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -258.68 14 12

290

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -259.24 12 10

291

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -259.59 12 10

292

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -259.89 11 10

293

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -260.35 5 4

Triple sheared

294

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -261.27 9 7

295

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -261.91 5 3

296

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -263.56 8 6

297

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -264.10 6 3

298

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -264.54 12 11

299

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -264.77 11 10

300

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -266.97 10 8

301

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -267.21 9 7

302

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -268.14 9 8

303

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -269.64 4 2

Minor groove platform, major groove intercalation

304

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -269.73 9 9

8x7 Sarcin-Ricin; G-bulge

305

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -273.25 9 8

Kink-turn

306

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -273.33 8 5

307

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -274.18 11 11

tSH-tHW-tHH-tHS

308

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -274.19 10 9

309

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -274.88 6 4

310

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -275.19 12 11

311

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -275.50 10 8

312

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -276.50 12 10

313

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -276.65 6 4

314

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -278.22 5 3

Major groove platform with intercalated tWH

315

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -279.44 10 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

316

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -286.85 6 5

317

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -287.13 11 9

318

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -288.03 5 3

Left turn

319

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -288.29 14 13

320

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -289.96 8 7

Kink-turn

321

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -290.30 12 11

322

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -292.60 15 14

Kink-turn related

323

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -294.53 12 11

324

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -294.83 16 15

325

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -295.56 10 9

326

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -297.55 13 11

327

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -297.62 14 13

Pseudoknot

328

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -298.76 12 11

329

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -298.94 13 12

10x8 Sarcin-Ricin; G-bulge

330

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -299.88 10 7

Reverse kink-turn related

331

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -301.87 13 12

332

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -303.13 9 7

333

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -305.47 12 11

334

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -307.53 10 8

335

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -308.29 12 11

336

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -308.33 12 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

337

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -309.13 12 11

338

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -309.30 10.5 9

339

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -310.20 8 7

Kink-turn

340

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -312.58 12 11

341

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -312.59 15 14

342

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -312.84 16 14

343

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -317.54 10 9

344

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -323.40 7 6

345

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -324.62 9 7

Kink-turn

346

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -330.91 10 8

347

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -332.11 10 8

Kink-turn

348

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -336.09 14 13

349

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -339.40 17 16

Kink-turn

350

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -340.84 12 11

351

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -342.99 14 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

352

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -344.78 15 14

353

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -346.26 12 11

Pseudoknot

354

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -347.48 12 11

355

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -347.69 15 14

356

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -356.90 6 3

8-nt loop receptor

357

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -357.08 16 15

358

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -360.86 13 12

359

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -363.19 13 12

360

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -365.29 8 7

361

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -367.05 12 12

Bacterial 5S Loop E

362

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -369.47 15 13

Pseudoknot

363

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -373.42 7 6

SSU/LSU pseudoknot

364

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -383.51 12 10

365

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -385.95 13 12

366

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -388.66 13 12

367

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -389.22 12 10

368

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -391.06 10 8

Minor groove platform related

369

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -394.70 10 9

370

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -396.58 13 12

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

371

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -397.50 17 16

372

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -402.82 18 17

373

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -417.35 18 17

374

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -421.24 10 10

Kink-turn related

375

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -422.95 13 12

376

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -432.05 18 17

377

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -438.09 16 14

378

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -444.85 15 14

379

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -466.23 6 3

Minor groove platform

380

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -466.75 16 14

381

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -485.55 18 17

Kink-turn related

382

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -487.38 7 5

Major groove intercalation

383

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -493.28 21 20

384

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -517.14 4 2

Major groove platform; stack outside cWW

385

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -521.40 21 20

386

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -530.40 19 19

387

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -539.75 22 22

388

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -561.86 23 22

389

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -578.80 7 6

390

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -598.54 7 5

Symmetric double minor groove platform

391

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -706.38 10 8

392

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -715.97 6 4

393

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -845.84 6 4

394

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -942.27 8 6

Kink-turn

395

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -952.55 7 5

396

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -996.21 9 7

397

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -1232.52 9 8

Kink-turn with non-sequential stacking

398

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -1477.33 14 12

399

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -1489.72 11 10

400

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -1529.13 11 9

Part of G-quadruplex

401

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -1532.86 19 19

402

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -1569.46 11 9

403

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -1575.29 11 9

404

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -1669.13 13 12

405

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -1987.86 8 6

406

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6205.72 9 8

407

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6538.55 7 4

C-loop with bulged stacked A's

408

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 5 3

C-loop

409

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 21 19

410

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 16 16

411

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 22 21

Coloring options: