JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 15 Internal loop
Column numbers: 132-135, 162-165 - View nucleotides in PDB file(s)
Scored sequences and counts
U--A*U--A 28
U--U*G--A 28
G--A*U--C 25
U--G*C--A 19
C--G*C--G 15
A--A*U--U 13
U--G*U--A 12
U--U*A--A 12
A--U*U--U 11
A--G*U--U 9
AAAC*G--U 6
C-UG*C--G 6
A--U*G--U 6
C--A*U--G 6
C--G*U--G 6
--UG*CA-- 5
CAGG*U--G 4
A--U*A--U 4
G--C*G--C 4
CAGC*GCUG 3
A--C*G--U 3
C--G*U--U 3
G--C*G--U 3
G--U*U--C 3
U--C*G--A 3
AGUG*UACU 2
AUGA*UA-U 2
U-UG*CA-G 2
C--U*A--G 2
G--C*G--A 2
G--G*U--U 2
G--U*A--C 2
G--U*A--U 2
U--G*C--G 2
CCAC*GCGG 1
CGUG*UACG 1
UAUA*UAUA 1
AAUU*GU-U 1
AUGA*U-AU 1
UUUA*UA-A 1
-CAG*CA-A 1
A-AU*GG-U 1
A-UC*GA-U 1
AAAG*C--U 1
AAGC*GC-- 1
CAGA*-U-G 1
CAUU*U--G 1
GUUG*C--U 1
U-UG*CA-A 1
U-GA*U--A 1
U-UA*U--G 1
--GC*GU-- 1
--UG*UU-- 1
A--C*U--U 1
A--U*A--A 1
C--C*G--G 1
C--U*U--G 1
G--A*U--U 1
G--G*C--C 1
G--G*U--C 1
U--A*A--A 1
U--A*U--G 1
U--U*G--G 1
Omitted sequenced and counts
A--G*---U 2
A--U*---U 1
C--A*---G 1
U--A*---G 1
----*---- 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_84476.1
Basepair signature:
|
83.45 | 14.55 | 3 | 2 |
Multiple bulged bases |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
83.10 | 9.08 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_07039.3
Basepair signature:
|
82.75 | 6.07 | 2 | 1 |
Major groove platform |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
70.07 | 10.26 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_73452.2
Basepair signature:
|
60.56 | 7.52 | 3 | 1 |
|
| 6 |
Motif group IL_66635.5
Basepair signature:
|
57.04 | 0.39 | 3 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
57.04 | -6.07 | 3 | 1 |
|
| 8 |
Motif group IL_90729.1
Basepair signature:
|
56.34 | -5.31 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_00225.13
Basepair signature:
|
54.93 | -16.18 | 2 | 1 |
Single bulged G |
| 10 |
Motif group IL_26793.1
Basepair signature:
|
53.17 | -5.99 | 2 | 1 |
Single stack bend |
| 11 |
Motif group IL_31737.3
Basepair signature:
|
53.17 | -9.27 | 3 | 1 |
Stack and bulge |
| 12 |
Motif group IL_16386.4
Basepair signature:
|
51.41 | -12.00 | 4 | 1 |
|
| 13 |
Motif group IL_61258.15
Basepair signature:
|
51.06 | -25.36 | 2 | 1 |
Single bulged C |
| 14 |
Motif group IL_31462.6
Basepair signature:
|
29.23 | -25.72 | 1 | 1 |
Single bulged A |
| 15 |
Motif group IL_89505.4
Basepair signature:
|
28.87 | -26.43 | 1 | 1 |
Single bulged U |
| 16 |
Motif group IL_08770.1
Basepair signature:
|
9.86 | -51.44 | 4 | 2 |
|
| 17 |
Motif group IL_82107.4
Basepair signature:
|
9.86 | -55.35 | 3 | 2 |
Multiple bulged bases |
| 18 |
Motif group IL_76709.2
Basepair signature:
|
7.39 | -67.99 | 4 | 2 |
|
| 19 |
Motif group IL_79895.1
Basepair signature:
|
7.04 | -60.20 | 5 | 2 |
|
| 20 |
Motif group IL_42626.2
Basepair signature:
|
6.69 | -185.87 | 2 | 2 |
|
| 21 |
Motif group IL_59877.1
Basepair signature:
|
6.69 | -9501.94 | 4 | 2 |
|
| 22 |
Motif group IL_56987.1
Basepair signature:
|
5.63 | -59.60 | 3 | 2 |
|
| 23 |
Motif group IL_51454.3
Basepair signature:
|
5.63 | -146.69 | 2 | 1 |
Minor groove platform |
| 24 |
Motif group IL_48076.6
Basepair signature:
|
5.63 | -166.05 | 2 | 1 |
Major groove platform |
| 25 |
Motif group IL_00881.1
Basepair signature:
|
4.58 | -72.53 | 4 | 2 |
|
| 26 |
Motif group IL_73355.1
Basepair signature:
|
4.58 | -74.30 | 5 | 2 |
|
| 27 |
Motif group IL_47074.2
Basepair signature:
|
4.58 | -91.30 | 4 | 2 |
|
| 28 |
Motif group IL_95583.2
Basepair signature:
|
4.58 | -194.59 | 4 | 2 |
Minor groove platform, major groove intercalation |
| 29 |
Motif group IL_15052.4
Basepair signature:
|
4.58 | -298.70 | 3 | 2 |
Minor groove platform |
| 30 |
Motif group IL_02555.1
Basepair signature:
|
4.23 | -252.23 | 3 | 2 |
Major groove platform with intercalation |
| 31 |
Motif group IL_81522.2
Basepair signature:
|
4.23 | -324.20 | 5 | 3 |
Major groove minor groove platform with intercalation; mini C-loop |
| 32 |
Motif group IL_57744.1
Basepair signature:
|
3.87 | -94.08 | 3 | 2 |
Isolated non-canonical cWW pair |
| 33 |
Motif group IL_14688.1
Basepair signature:
|
3.52 | -75.21 | 4 | 2 |
Isolated non-canonical cWW pair |
| 34 |
Motif group IL_14368.1
Basepair signature:
|
3.52 | -198.33 | 4 | 2 |
Major groove platform with intercalated tWH |
| 35 |
Motif group IL_07785.1
Basepair signature:
|
3.17 | -70.32 | 3 | 2 |
Isolated non-canonical cWW pair |
| 36 |
Motif group IL_83389.2
Basepair signature:
|
3.17 | -132.93 | 5 | 3 |
|
| 37 |
Motif group IL_10569.1
Basepair signature:
|
3.17 | -154.47 | 3 | 1 |
|
| 38 |
Motif group IL_50694.7
Basepair signature:
|
3.17 | -302.54 | 3 | 2 |
Major groove platform; stack outside cWW |
| 39 |
Motif group IL_67095.2
Basepair signature:
|
2.82 | -75.47 | 3 | 2 |
Isolated tWW turn |
| 40 |
Motif group IL_22551.4
Basepair signature:
|
2.82 | -76.86 | 4 | 2 |
|
| 41 |
Motif group IL_42997.3
Basepair signature:
|
2.82 | -80.40 | 3 | 2 |
Isolated cWS basepair |
| 42 |
Motif group IL_99358.1
Basepair signature:
|
2.82 | -111.77 | 4 | 3 |
|
| 43 |
Motif group IL_63775.1
Basepair signature:
|
2.82 | -113.93 | 5 | 1 |
|
| 44 |
Motif group IL_31531.3
Basepair signature:
|
2.82 | -156.90 | 4 | 3 |
Decoding loop related |
| 45 |
Motif group IL_44465.1
Basepair signature:
|
2.46 | -69.83 | 3 | 2 |
Isolated non-canonical cWW contact |
| 46 |
Motif group IL_87907.2
Basepair signature:
|
2.46 | -82.59 | 2 | 2 |
Isolated non-canonical cWW pair |
| 47 |
Motif group IL_10167.6
Basepair signature:
|
2.46 | -92.97 | 2 | 2 |
Isolated cWH basepair |
| 48 |
Motif group IL_85599.2
Basepair signature:
|
2.46 | -95.10 | 4 | 2 |
Isolated tHS basepair with bulges |
| 49 |
Motif group IL_61438.4
Basepair signature:
|
2.46 | -125.39 | 5.5 | 3 |
|
| 50 |
Motif group IL_68140.4
Basepair signature:
|
2.46 | -308.84 | 3 | 2 |
Major groove minor groove platform; mini C-loop |
| 51 |
Motif group IL_41344.1
Basepair signature:
|
1.76 | -140.00 | 5 | 3 |
|
| 52 |
Motif group IL_90351.1
Basepair signature:
|
1.76 | -155.92 | 4 | 3 |
|
| 53 |
Motif group IL_55516.2
Basepair signature:
|
1.76 | -170.05 | 5 | 3 |
|
| 54 |
Motif group IL_92446.2
Basepair signature:
|
1.76 | -174.67 | 5 | 4 |
|
| 55 |
Motif group IL_07171.1
Basepair signature:
|
1.41 | -110.29 | 5 | 3 |
Bulged stacked bases |
| 56 |
Motif group IL_96371.1
Basepair signature:
|
1.41 | -132.00 | 5 | 3 |
|
| 57 |
Motif group IL_28564.1
Basepair signature:
|
1.41 | -134.58 | 5.5 | 4 |
|
| 58 |
Motif group IL_61341.1
Basepair signature:
|
1.41 | -155.04 | 5 | 3 |
|
| 59 |
Motif group IL_28037.2
Basepair signature:
|
1.06 | -97.40 | 2 | 2 |
Isolated non-canonical cWW pair |
| 60 |
Motif group IL_15698.3
Basepair signature:
|
0.70 | -152.53 | 4 | 3 |
|
| 61 |
Motif group IL_51387.2
Basepair signature:
|
0.70 | -166.50 | 4 | 3 |
|
| 62 |
Motif group IL_43644.1
Basepair signature:
|
0.70 | -174.60 | 6 | 4 |
Other IL |
| 63 |
Motif group IL_78800.1
Basepair signature:
|
0.70 | -224.27 | 6 | 4 |
|
| 64 |
Motif group IL_94967.1
Basepair signature:
|
0.35 | -124.26 | 6 | 3 |
|
| 65 |
Motif group IL_70335.1
Basepair signature:
|
0.35 | -132.83 | 6 | 5 |
|
| 66 |
Motif group IL_04785.1
Basepair signature:
|
0.35 | -198.02 | 7 | 4 |
|
| 67 |
Motif group IL_75294.1
Basepair signature:
|
0.35 | -201.45 | 7 | 5 |
|
| 68 |
Motif group IL_77658.1
Basepair signature:
|
0.35 | -214.26 | 4 | 4 |
Tandem non-canonical cWW pairs |
| 69 |
Motif group IL_85033.2
Basepair signature:
|
0.35 | -219.65 | 4 | 4 |
Tandem non-canonical cWW pairs |
| 70 |
Motif group IL_51479.1
Basepair signature:
|
0.35 | -219.90 | 5 | 4 |
|
| 71 |
Motif group IL_48444.6
Basepair signature:
|
0.35 | -237.63 | 6 | 5 |
|
| 72 |
Motif group IL_10796.1
Basepair signature:
|
0.00 | -96.78 | 4 | 2 |
|
| 73 |
Motif group IL_11415.1
Basepair signature:
|
0.00 | -105.95 | 5 | 4 |
|
| 74 |
Motif group IL_26685.1
Basepair signature:
|
0.00 | -117.46 | 5 | 3 |
Multiple bulged bases |
| 75 |
Motif group IL_20031.1
Basepair signature:
|
0.00 | -121.09 | 5 | 3 |
|
| 76 |
Motif group IL_82706.1
Basepair signature:
|
0.00 | -123.01 | 8 | 6 |
|
| 77 |
Motif group IL_70376.1
Basepair signature:
|
0.00 | -123.18 | 6 | 4 |
|
| 78 |
Motif group IL_89984.3
Basepair signature:
|
0.00 | -127.87 | 5 | 4 |
|
| 79 |
Motif group IL_26728.3
Basepair signature:
|
0.00 | -130.66 | 6 | 5 |
|
| 80 |
Motif group IL_99380.1
Basepair signature:
|
0.00 | -133.21 | 6 | 4 |
|
| 81 |
Motif group IL_07173.1
Basepair signature:
|
0.00 | -133.78 | 6 | 5 |
|
| 82 |
Motif group IL_76319.5
Basepair signature:
|
0.00 | -136.32 | 5 | 4 |
|
| 83 |
Motif group IL_73789.1
Basepair signature:
|
0.00 | -137.59 | 7 | 5 |
|
| 84 |
Motif group IL_82741.2
Basepair signature:
|
0.00 | -139.84 | 5 | 3 |
|
| 85 |
Motif group IL_43622.1
Basepair signature:
|
0.00 | -141.46 | 6 | 5 |
|
| 86 |
Motif group IL_65718.4
Basepair signature:
|
0.00 | -148.53 | 7 | 5 |
|
| 87 |
Motif group IL_42314.1
Basepair signature:
|
0.00 | -148.93 | 5 | 4 |
|
| 88 |
Motif group IL_10389.1
Basepair signature:
|
0.00 | -149.84 | 6 | 4 |
|
| 89 |
Motif group IL_51191.1
Basepair signature:
|
0.00 | -150.09 | 7 | 6 |
|
| 90 |
Motif group IL_69000.1
Basepair signature:
|
0.00 | -150.45 | 7 | 5 |
|
| 91 |
Motif group IL_47972.1
Basepair signature:
|
0.00 | -151.66 | 6 | 4 |
|
| 92 |
Motif group IL_91920.1
Basepair signature:
|
0.00 | -152.20 | 6 | 5 |
|
| 93 |
Motif group IL_09990.4
Basepair signature:
|
0.00 | -153.21 | 6 | 3 |
|
| 94 |
Motif group IL_67767.4
Basepair signature:
|
0.00 | -156.58 | 6 | 5 |
Receptor of 11-nt loop-receptor motif |
| 95 |
Motif group IL_25463.1
Basepair signature:
|
0.00 | -156.88 | 5 | 4 |
|
| 96 |
Motif group IL_96759.1
Basepair signature:
|
0.00 | -157.60 | 5 | 4 |
|
| 97 |
Motif group IL_69145.3
Basepair signature:
|
0.00 | -160.01 | 7 | 6 |
Pseudoknot |
| 98 |
Motif group IL_61242.1
Basepair signature:
|
0.00 | -160.19 | 7 | 6 |
|
| 99 |
Motif group IL_14177.2
Basepair signature:
|
0.00 | -161.31 | 6 | 5 |
|
| 100 |
Motif group IL_06300.1
Basepair signature:
|
0.00 | -161.55 | 6 | 5 |
|
| 101 |
Motif group IL_76758.2
Basepair signature:
|
0.00 | -162.36 | 7 | 6 |
Intercalated tWH |
| 102 |
Motif group IL_45444.1
Basepair signature:
|
0.00 | -162.41 | 8 | 6 |
|
| 103 |
Motif group IL_98347.1
Basepair signature:
|
0.00 | -164.80 | 7 | 5 |
|
| 104 |
Motif group IL_29346.2
Basepair signature:
|
0.00 | -165.31 | 5 | 3 |
Left turn |
| 105 |
Motif group IL_70096.1
Basepair signature:
|
0.00 | -165.60 | 7 | 6 |
Kink-turn related |
| 106 |
Motif group IL_33141.1
Basepair signature:
|
0.00 | -166.32 | 9 | 7 |
|
| 107 |
Motif group IL_53448.1
Basepair signature:
|
0.00 | -166.63 | 6 | 5 |
Receptor of 11-nt loop-receptor motif |
| 108 |
Motif group IL_57881.1
Basepair signature:
|
0.00 | -166.66 | 7 | 4 |
Multiple bulged bases |
| 109 |
Motif group IL_19102.1
Basepair signature:
|
0.00 | -168.44 | 5 | 4 |
|
| 110 |
Motif group IL_13404.2
Basepair signature:
|
0.00 | -168.67 | 5 | 4 |
Tandem non-canonical cWW pairs |
| 111 |
Motif group IL_34737.1
Basepair signature:
|
0.00 | -169.88 | 7 | 6 |
|
| 112 |
Motif group IL_29223.1
Basepair signature:
|
0.00 | -171.18 | 8 | 7 |
|
| 113 |
Motif group IL_88017.1
Basepair signature:
|
0.00 | -171.20 | 7 | 5 |
|
| 114 |
Motif group IL_37603.1
Basepair signature:
|
0.00 | -171.31 | 8 | 7 |
|
| 115 |
Motif group IL_02203.1
Basepair signature:
|
0.00 | -171.52 | 6 | 4 |
|
| 116 |
Motif group IL_96788.1
Basepair signature:
|
0.00 | -171.89 | 8 | 6 |
|
| 117 |
Motif group IL_64842.1
Basepair signature:
|
0.00 | -172.43 | 9 | 7 |
|
| 118 |
Motif group IL_88082.1
Basepair signature:
|
0.00 | -173.12 | 7 | 6 |
|
| 119 |
Motif group IL_62012.1
Basepair signature:
|
0.00 | -173.64 | 7 | 5 |
Decoding loop related |
| 120 |
Motif group IL_28788.1
Basepair signature:
|
0.00 | -173.84 | 5 | 4 |
|
| 121 |
Motif group IL_46086.1
Basepair signature:
|
0.00 | -174.22 | 7 | 5 |
|
| 122 |
Motif group IL_91592.1
Basepair signature:
|
0.00 | -174.26 | 8 | 6 |
|
| 123 |
Motif group IL_10484.1
Basepair signature:
|
0.00 | -175.43 | 5 | 4 |
Double sheared |
| 124 |
Motif group IL_82683.2
Basepair signature:
|
0.00 | -175.48 | 8 | 6 |
|
| 125 |
Motif group IL_29471.1
Basepair signature:
|
0.00 | -175.49 | 7 | 6 |
|
| 126 |
Motif group IL_90346.1
Basepair signature:
|
0.00 | -175.51 | 7 | 6 |
|
| 127 |
Motif group IL_47108.1
Basepair signature:
|
0.00 | -176.60 | 7 | 6 |
|
| 128 |
Motif group IL_91636.1
Basepair signature:
|
0.00 | -176.67 | 9 | 7 |
|
| 129 |
Motif group IL_96332.5
Basepair signature:
|
0.00 | -177.24 | 8 | 6 |
|
| 130 |
Motif group IL_31558.1
Basepair signature:
|
0.00 | -177.69 | 7 | 5 |
|
| 131 |
Motif group IL_44874.1
Basepair signature:
|
0.00 | -180.43 | 8 | 7 |
tSH-tHW |
| 132 |
Motif group IL_73759.1
Basepair signature:
|
0.00 | -181.74 | 9 | 7 |
Part of G-quadruplex |
| 133 |
Motif group IL_61476.2
Basepair signature:
|
0.00 | -184.50 | 5 | 4 |
|
| 134 |
Motif group IL_21001.1
Basepair signature:
|
0.00 | -186.48 | 7 | 6 |
|
| 135 |
Motif group IL_59302.1
Basepair signature:
|
0.00 | -186.57 | 6 | 5 |
|
| 136 |
Motif group IL_25186.4
Basepair signature:
|
0.00 | -186.58 | 8 | 7 |
|
| 137 |
Motif group IL_69440.3
Basepair signature:
|
0.00 | -187.04 | 6 | 4 |
|
| 138 |
Motif group IL_95811.1
Basepair signature:
|
0.00 | -187.11 | 9 | 7 |
Vitamin B12 Aptamer |
| 139 |
Motif group IL_56317.1
Basepair signature:
|
0.00 | -187.11 | 9 | 7 |
|
| 140 |
Motif group IL_74367.1
Basepair signature:
|
0.00 | -188.13 | 7 | 6 |
|
| 141 |
Motif group IL_19668.1
Basepair signature:
|
0.00 | -188.14 | 6 | 5 |
Isolated non-canonical cWW pair |
| 142 |
Motif group IL_27393.10
Basepair signature:
|
0.00 | -188.50 | 8 | 6 |
|
| 143 |
Motif group IL_49612.1
Basepair signature:
|
0.00 | -189.34 | 8 | 6 |
|
| 144 |
Motif group IL_12566.4
Basepair signature:
|
0.00 | -191.53 | 7 | 5 |
|
| 145 |
Motif group IL_66997.2
Basepair signature:
|
0.00 | -192.52 | 7 | 4 |
|
| 146 |
Motif group IL_84251.1
Basepair signature:
|
0.00 | -192.58 | 6 | 4 |
|
| 147 |
Motif group IL_85222.1
Basepair signature:
|
0.00 | -193.23 | 9 | 8 |
|
| 148 |
Motif group IL_94351.1
Basepair signature:
|
0.00 | -194.99 | 8 | 7 |
|
| 149 |
Motif group IL_80412.1
Basepair signature:
|
0.00 | -195.52 | 9 | 8 |
|
| 150 |
Motif group IL_09570.1
Basepair signature:
|
0.00 | -195.69 | 9 | 8 |
|
| 151 |
Motif group IL_22829.2
Basepair signature:
|
0.00 | -196.38 | 8 | 7 |
|
| 152 |
Motif group IL_99498.1
Basepair signature:
|
0.00 | -196.79 | 8 | 7 |
|
| 153 |
Motif group IL_11399.2
Basepair signature:
|
0.00 | -198.63 | 7 | 5 |
|
| 154 |
Motif group IL_46387.1
Basepair signature:
|
0.00 | -198.67 | 5 | 4 |
|
| 155 |
Motif group IL_21200.1
Basepair signature:
|
0.00 | -200.35 | 7 | 6 |
tSH-tHW |
| 156 |
Motif group IL_63519.1
Basepair signature:
|
0.00 | -200.45 | 7 | 6 |
|
| 157 |
Motif group IL_52743.1
Basepair signature:
|
0.00 | -201.80 | 7 | 6 |
|
| 158 |
Motif group IL_97631.1
Basepair signature:
|
0.00 | -201.95 | 8 | 7 |
Triple sheared related |
| 159 |
Motif group IL_16218.2
Basepair signature:
|
0.00 | -202.03 | 8 | 6 |
|
| 160 |
Motif group IL_68574.4
Basepair signature:
|
0.00 | -202.34 | 6 | 5 |
|
| 161 |
Motif group IL_25412.1
Basepair signature:
|
0.00 | -203.33 | 7 | 5 |
Major groove intercalation |
| 162 |
Motif group IL_97273.1
Basepair signature:
|
0.00 | -203.81 | 6 | 5 |
|
| 163 |
Motif group IL_86136.1
Basepair signature:
|
0.00 | -203.94 | 9 | 7 |
|
| 164 |
Motif group IL_71598.1
Basepair signature:
|
0.00 | -204.21 | 7 | 5 |
|
| 165 |
Motif group IL_92634.2
Basepair signature:
|
0.00 | -204.81 | 6 | 4 |
|
| 166 |
Motif group IL_01038.1
Basepair signature:
|
0.00 | -206.76 | 8 | 7 |
UAA/GAN with extra stack |
| 167 |
Motif group IL_59258.1
Basepair signature:
|
0.00 | -207.99 | 9 | 8 |
|
| 168 |
Motif group IL_21173.1
Basepair signature:
|
0.00 | -208.48 | 9 | 7 |
|
| 169 |
Motif group IL_21667.1
Basepair signature:
|
0.00 | -208.75 | 8 | 7 |
|
| 170 |
Motif group IL_49061.1
Basepair signature:
|
0.00 | -209.26 | 5 | 4 |
|
| 171 |
Motif group IL_26598.1
Basepair signature:
|
0.00 | -209.62 | 8 | 6 |
|
| 172 |
Motif group IL_30730.1
Basepair signature:
|
0.00 | -209.88 | 9 | 8 |
|
| 173 |
Motif group IL_38969.1
Basepair signature:
|
0.00 | -211.65 | 10 | 8 |
Reverse kink-turn related |
| 174 |
Motif group IL_11344.2
Basepair signature:
|
0.00 | -211.76 | 7 | 6 |
180 degree turn |
| 175 |
Motif group IL_05192.4
Basepair signature:
|
0.00 | -211.95 | 7 | 6 |
|
| 176 |
Motif group IL_33623.1
Basepair signature:
|
0.00 | -212.93 | 10 | 8 |
|
| 177 |
Motif group IL_88269.4
Basepair signature:
|
0.00 | -213.59 | 8 | 7 |
6x5 Sarcin-Ricin; G-bulge |
| 178 |
Motif group IL_01176.1
Basepair signature:
|
0.00 | -214.97 | 9 | 7 |
|
| 179 |
Motif group IL_67780.1
Basepair signature:
|
0.00 | -215.09 | 8 | 6 |
|
| 180 |
Motif group IL_09908.1
Basepair signature:
|
0.00 | -215.83 | 9 | 7 |
Reverse kink-turn |
| 181 |
Motif group IL_38186.6
Basepair signature:
|
0.00 | -216.37 | 6 | 5 |
|
| 182 |
Motif group IL_00981.1
Basepair signature:
|
0.00 | -216.55 | 9 | 7 |
UAA/GAN with tHH |
| 183 |
Motif group IL_85652.1
Basepair signature:
|
0.00 | -217.04 | 10 | 8 |
|
| 184 |
Motif group IL_97697.1
Basepair signature:
|
0.00 | -217.82 | 10 | 9 |
Reverse turn |
| 185 |
Motif group IL_70627.3
Basepair signature:
|
0.00 | -218.61 | 8 | 7 |
UAA/GAN related |
| 186 |
Motif group IL_80231.1
Basepair signature:
|
0.00 | -218.73 | 8 | 7 |
Other IL |
| 187 |
Motif group IL_87211.1
Basepair signature:
|
0.00 | -219.46 | 6 | 4 |
|
| 188 |
Motif group IL_69986.1
Basepair signature:
|
0.00 | -220.45 | 8 | 8 |
|
| 189 |
Motif group IL_70411.2
Basepair signature:
|
0.00 | -221.16 | 7 | 7 |
|
| 190 |
Motif group IL_42778.1
Basepair signature:
|
0.00 | -221.97 | 9 | 8 |
|
| 191 |
Motif group IL_82968.1
Basepair signature:
|
0.00 | -222.31 | 9 | 7 |
|
| 192 |
Motif group IL_66798.2
Basepair signature:
|
0.00 | -222.42 | 7 | 6 |
AAA cross-strand stack |
| 193 |
Motif group IL_89099.1
Basepair signature:
|
0.00 | -223.04 | 10 | 8 |
Other IL |
| 194 |
Motif group IL_12697.1
Basepair signature:
|
0.00 | -223.09 | 8 | 7 |
|
| 195 |
Motif group IL_24499.1
Basepair signature:
|
0.00 | -223.33 | 9 | 8 |
|
| 196 |
Motif group IL_55953.3
Basepair signature:
|
0.00 | -223.83 | 9 | 8 |
|
| 197 |
Motif group IL_74184.1
Basepair signature:
|
0.00 | -224.40 | 10 | 8 |
|
| 198 |
Motif group IL_80926.1
Basepair signature:
|
0.00 | -225.96 | 9 | 8 |
|
| 199 |
Motif group IL_44438.1
Basepair signature:
|
0.00 | -227.22 | 8 | 8 |
|
| 200 |
Motif group IL_68405.1
Basepair signature:
|
0.00 | -227.69 | 10 | 9 |
Kink-turn related |
| 201 |
Motif group IL_33323.1
Basepair signature:
|
0.00 | -227.75 | 6 | 5 |
|
| 202 |
Motif group IL_55917.1
Basepair signature:
|
0.00 | -228.56 | 9 | 7 |
|
| 203 |
Motif group IL_38634.5
Basepair signature:
|
0.00 | -228.72 | 7 | 6 |
cWH basepair and non-canonical AC |
| 204 |
Motif group IL_09044.1
Basepair signature:
|
0.00 | -229.31 | 9 | 8 |
|
| 205 |
Motif group IL_36516.3
Basepair signature:
|
0.00 | -231.54 | 5 | 4 |
|
| 206 |
Motif group IL_74051.1
Basepair signature:
|
0.00 | -231.85 | 9 | 8 |
Kink-turn |
| 207 |
Motif group IL_99646.2
Basepair signature:
|
0.00 | -233.70 | 5 | 5 |
tSH-tHW |
| 208 |
Motif group IL_33886.1
Basepair signature:
|
0.00 | -234.32 | 8 | 8 |
Kink-turn with embedded cWW pair |
| 209 |
Motif group IL_38507.2
Basepair signature:
|
0.00 | -234.91 | 6 | 5 |
UAA/GAN |
| 210 |
Motif group IL_85498.1
Basepair signature:
|
0.00 | -235.12 | 11 | 9 |
|
| 211 |
Motif group IL_54896.1
Basepair signature:
|
0.00 | -236.39 | 11 | 9 |
|
| 212 |
Motif group IL_09705.15
Basepair signature:
|
0.00 | -236.44 | 4 | 4 |
Double sheared |
| 213 |
Motif group IL_78472.1
Basepair signature:
|
0.00 | -237.16 | 11 | 9 |
|
| 214 |
Motif group IL_62654.1
Basepair signature:
|
0.00 | -238.16 | 8 | 7 |
tSH-tHH-tHS |
| 215 |
Motif group IL_51265.3
Basepair signature:
|
0.00 | -238.56 | 8 | 7 |
Kink-turn from U4 |
| 216 |
Motif group IL_23038.1
Basepair signature:
|
0.00 | -238.74 | 10 | 9 |
|
| 217 |
Motif group IL_77870.1
Basepair signature:
|
0.00 | -239.57 | 10 | 9 |
|
| 218 |
Motif group IL_25872.4
Basepair signature:
|
0.00 | -240.56 | 5 | 4 |
|
| 219 |
Motif group IL_12745.1
Basepair signature:
|
0.00 | -241.40 | 10 | 9 |
tWH-tWH-tHW-tHW |
| 220 |
Motif group IL_82292.1
Basepair signature:
|
0.00 | -241.50 | 8 | 8 |
|
| 221 |
Motif group IL_31561.1
Basepair signature:
|
0.00 | -242.49 | 10 | 9 |
|
| 222 |
Motif group IL_71294.3
Basepair signature:
|
0.00 | -242.98 | 9 | 8 |
Double sheared; A in syn; two near cWW pairs |
| 223 |
Motif group IL_88974.1
Basepair signature:
|
0.00 | -243.01 | 10 | 9 |
|
| 224 |
Motif group IL_70801.1
Basepair signature:
|
0.00 | -245.44 | 10 | 9 |
|
| 225 |
Motif group IL_19897.3
Basepair signature:
|
0.00 | -246.02 | 8 | 7 |
|
| 226 |
Motif group IL_54041.2
Basepair signature:
|
0.00 | -246.83 | 10 | 9 |
tHW-tHW cross-strand stack |
| 227 |
Motif group IL_31084.1
Basepair signature:
|
0.00 | -247.25 | 10 | 8 |
|
| 228 |
Motif group IL_69229.3
Basepair signature:
|
0.00 | -247.90 | 9 | 9 |
Kink-turn |
| 229 |
Motif group IL_68909.1
Basepair signature:
|
0.00 | -249.21 | 6 | 5 |
|
| 230 |
Motif group IL_33711.1
Basepair signature:
|
0.00 | -249.37 | 8 | 7 |
Minor groove platform |
| 231 |
Motif group IL_61440.1
Basepair signature:
|
0.00 | -249.63 | 7 | 6 |
Triple sheared |
| 232 |
Motif group IL_34822.1
Basepair signature:
|
0.00 | -250.69 | 10 | 8 |
|
| 233 |
Motif group IL_76308.6
Basepair signature:
|
0.00 | -250.77 | 9 | 8 |
tSH-tWH-tHS-cWW |
| 234 |
Motif group IL_53596.1
Basepair signature:
|
0.00 | -252.51 | 9 | 7 |
|
| 235 |
Motif group IL_47087.1
Basepair signature:
|
0.00 | -252.85 | 9 | 7 |
Kink-turn related |
| 236 |
Motif group IL_16458.4
Basepair signature:
|
0.00 | -253.12 | 9 | 9 |
Sarcin-Ricin target in LSU H95; G-bulge |
| 237 |
Motif group IL_74957.1
Basepair signature:
|
0.00 | -253.21 | 8 | 7 |
cWH basepair with bulged bases |
| 238 |
Motif group IL_77278.1
Basepair signature:
|
0.00 | -253.21 | 10 | 10 |
|
| 239 |
Motif group IL_88072.1
Basepair signature:
|
0.00 | -253.77 | 10 | 9 |
|
| 240 |
Motif group IL_20047.1
Basepair signature:
|
0.00 | -254.43 | 10 | 10 |
|
| 241 |
Motif group IL_24254.1
Basepair signature:
|
0.00 | -258.42 | 10 | 9 |
7x6 Sarcin-Ricin with UU cWW pair; G-bulge |
| 242 |
Motif group IL_46112.1
Basepair signature:
|
0.00 | -259.24 | 9 | 7 |
|
| 243 |
Motif group IL_41853.1
Basepair signature:
|
0.00 | -263.19 | 10 | 9 |
|
| 244 |
Motif group IL_44325.1
Basepair signature:
|
0.00 | -264.26 | 6 | 4 |
|
| 245 |
Motif group IL_18487.1
Basepair signature:
|
0.00 | -264.44 | 10 | 9 |
|
| 246 |
Motif group IL_04736.1
Basepair signature:
|
0.00 | -264.45 | 10 | 10 |
|
| 247 |
Motif group IL_87284.1
Basepair signature:
|
0.00 | -264.55 | 9 | 8 |
tSH-tHW-tWH-tHS |
| 248 |
Motif group IL_03350.1
Basepair signature:
|
0.00 | -265.52 | 11 | 9 |
Reverse kink-turn related |
| 249 |
Motif group IL_04650.2
Basepair signature:
|
0.00 | -265.77 | 10 | 8 |
|
| 250 |
Motif group IL_64231.5
Basepair signature:
|
0.00 | -266.90 | 6 | 5 |
|
| 251 |
Motif group IL_18354.1
Basepair signature:
|
0.00 | -267.13 | 10 | 8 |
|
| 252 |
Motif group IL_89021.2
Basepair signature:
|
0.00 | -267.76 | 6 | 6 |
UAA/GAN |
| 253 |
Motif group IL_16665.1
Basepair signature:
|
0.00 | -269.02 | 11 | 10 |
|
| 254 |
Motif group IL_13358.1
Basepair signature:
|
0.00 | -270.17 | 11 | 10 |
|
| 255 |
Motif group IL_80209.1
Basepair signature:
|
0.00 | -270.85 | 11 | 10 |
|
| 256 |
Motif group IL_47346.2
Basepair signature:
|
0.00 | -271.47 | 9.5 | 9 |
tSH-tSH-tHH-tHS |
| 257 |
Motif group IL_78349.3
Basepair signature:
|
0.00 | -272.18 | 10 | 10 |
|
| 258 |
Motif group IL_89312.1
Basepair signature:
|
0.00 | -272.32 | 11 | 9 |
|
| 259 |
Motif group IL_64048.1
Basepair signature:
|
0.00 | -272.37 | 10 | 8 |
|
| 260 |
Motif group IL_26307.2
Basepair signature:
|
0.00 | -273.34 | 9 | 9 |
7x6 Sarcin-Ricin; G-bulge |
| 261 |
Motif group IL_58112.2
Basepair signature:
|
0.00 | -273.89 | 6 | 5 |
|
| 262 |
Motif group IL_61286.1
Basepair signature:
|
0.00 | -274.71 | 11 | 10 |
8x6 Sarcin-Ricin with inserted A; G-bulge |
| 263 |
Motif group IL_04638.3
Basepair signature:
|
0.00 | -278.00 | 10 | 10 |
tSH-tHS-tHW |
| 264 |
Motif group IL_80398.1
Basepair signature:
|
0.00 | -279.22 | 6 | 4 |
Minor groove platform |
| 265 |
Motif group IL_09129.2
Basepair signature:
|
0.00 | -279.61 | 11 | 10 |
|
| 266 |
Motif group IL_69271.3
Basepair signature:
|
0.00 | -279.67 | 11 | 10 |
|
| 267 |
Motif group IL_04600.1
Basepair signature:
|
0.00 | -281.21 | 10 | 10 |
|
| 268 |
Motif group IL_85536.2
Basepair signature:
|
0.00 | -281.48 | 8 | 8 |
|
| 269 |
Motif group IL_77691.5
Basepair signature:
|
0.00 | -281.86 | 6 | 5 |
UAA/GAN related |
| 270 |
Motif group IL_15218.1
Basepair signature:
|
0.00 | -282.40 | 11 | 9 |
|
| 271 |
Motif group IL_68243.1
Basepair signature:
|
0.00 | -282.60 | 11 | 10 |
|
| 272 |
Motif group IL_88116.2
Basepair signature:
|
0.00 | -282.62 | 11 | 10 |
|
| 273 |
Motif group IL_00555.1
Basepair signature:
|
0.00 | -283.59 | 9 | 7 |
|
| 274 |
Motif group IL_49767.8
Basepair signature:
|
0.00 | -284.95 | 8 | 8 |
UAA/GAN with extra cWW |
| 275 |
Motif group IL_29198.2
Basepair signature:
|
0.00 | -287.07 | 10 | 10 |
7x7 Sarcin-Ricin with intercalated A; G-bulge |
| 276 |
Motif group IL_32016.1
Basepair signature:
|
0.00 | -287.91 | 10 | 9 |
Kink-turn |
| 277 |
Motif group IL_94684.1
Basepair signature:
|
0.00 | -288.91 | 6 | 5 |
|
| 278 |
Motif group IL_13874.1
Basepair signature:
|
0.00 | -288.95 | 11 | 10 |
|
| 279 |
Motif group IL_49867.1
Basepair signature:
|
0.00 | -289.27 | 12 | 11 |
|
| 280 |
Motif group IL_18472.4
Basepair signature:
|
0.00 | -289.61 | 9 | 7 |
|
| 281 |
Motif group IL_04021.2
Basepair signature:
|
0.00 | -290.15 | 10 | 10 |
Triple sheared with non-canonical cWW |
| 282 |
Motif group IL_17948.2
Basepair signature:
|
0.00 | -290.33 | 7 | 6 |
Double sheared with non-canonical cWW |
| 283 |
Motif group IL_54177.4
Basepair signature:
|
0.00 | -291.99 | 12 | 12 |
|
| 284 |
Motif group IL_41756.4
Basepair signature:
|
0.00 | -292.62 | 10 | 10 |
8x6 Sarcin-Ricin with inserted Y; G-bulge |
| 285 |
Motif group IL_85630.1
Basepair signature:
|
0.00 | -292.71 | 11 | 11 |
|
| 286 |
Motif group IL_23774.1
Basepair signature:
|
0.00 | -293.36 | 6 | 5 |
UAA/GAN variation |
| 287 |
Motif group IL_22373.1
Basepair signature:
|
0.00 | -293.96 | 6 | 4 |
8-nt loop receptor |
| 288 |
Motif group IL_37752.1
Basepair signature:
|
0.00 | -294.19 | 12 | 11 |
|
| 289 |
Motif group IL_58960.1
Basepair signature:
|
0.00 | -294.19 | 8 | 7 |
|
| 290 |
Motif group IL_17136.7
Basepair signature:
|
0.00 | -294.66 | 6 | 6 |
tSH-tWH-tHS |
| 291 |
Motif group IL_02349.4
Basepair signature:
|
0.00 | -294.69 | 11 | 10 |
8x6 Sarcin-Ricin with bulged A; G-bulge |
| 292 |
Motif group IL_70923.9
Basepair signature:
|
0.00 | -294.91 | 9 | 9 |
Kink-turn |
| 293 |
Motif group IL_07469.2
Basepair signature:
|
0.00 | -298.09 | 6 | 6 |
|
| 294 |
Motif group IL_06136.2
Basepair signature:
|
0.00 | -299.84 | 9 | 8 |
Quadruple sheared |
| 295 |
Motif group IL_94910.1
Basepair signature:
|
0.00 | -301.18 | 10 | 9 |
Kink-turn |
| 296 |
Motif group IL_38862.4
Basepair signature:
|
0.00 | -302.68 | 7 | 6 |
5x5 Sarcin-Ricin with intercalated A; G-bulge |
| 297 |
Motif group IL_65851.3
Basepair signature:
|
0.00 | -302.86 | 12 | 10 |
|
| 298 |
Motif group IL_22854.4
Basepair signature:
|
0.00 | -302.90 | 10 | 10 |
|
| 299 |
Motif group IL_31915.1
Basepair signature:
|
0.00 | -303.16 | 12 | 11 |
|
| 300 |
Motif group IL_25573.1
Basepair signature:
|
0.00 | -303.31 | 7 | 5 |
|
| 301 |
Motif group IL_57188.5
Basepair signature:
|
0.00 | -305.47 | 9 | 8 |
Kink-turn related |
| 302 |
Motif group IL_06691.1
Basepair signature:
|
0.00 | -307.89 | 8 | 7 |
|
| 303 |
Motif group IL_65594.1
Basepair signature:
|
0.00 | -310.07 | 11 | 11 |
8x7 Sarcin-Ricin; G-bulge |
| 304 |
Motif group IL_49751.4
Basepair signature:
|
0.00 | -310.80 | 6 | 6 |
Triple non-canonical cWW pairs |
| 305 |
Motif group IL_99692.2
Basepair signature:
|
0.00 | -311.25 | 10 | 10 |
Kink-turn |
| 306 |
Motif group IL_96236.1
Basepair signature:
|
0.00 | -311.36 | 7 | 6 |
|
| 307 |
Motif group IL_32056.1
Basepair signature:
|
0.00 | -311.59 | 11 | 9 |
|
| 308 |
Motif group IL_53787.1
Basepair signature:
|
0.00 | -312.71 | 12 | 11 |
Pseudoknot |
| 309 |
Motif group IL_58126.1
Basepair signature:
|
0.00 | -312.92 | 12 | 11 |
|
| 310 |
Motif group IL_95570.1
Basepair signature:
|
0.00 | -312.97 | 6 | 4 |
|
| 311 |
Motif group IL_01488.3
Basepair signature:
|
0.00 | -313.90 | 9 | 9 |
Kink-turn |
| 312 |
Motif group IL_01994.1
Basepair signature:
|
0.00 | -314.37 | 6 | 4 |
|
| 313 |
Motif group IL_43858.1
Basepair signature:
|
0.00 | -314.43 | 13 | 13 |
|
| 314 |
Motif group IL_84665.1
Basepair signature:
|
0.00 | -314.53 | 13 | 11 |
|
| 315 |
Motif group IL_58350.1
Basepair signature:
|
0.00 | -317.32 | 12 | 11 |
|
| 316 |
Motif group IL_04332.3
Basepair signature:
|
0.00 | -319.48 | 13 | 12 |
|
| 317 |
Motif group IL_69543.3
Basepair signature:
|
0.00 | -323.18 | 11 | 10 |
|
| 318 |
Motif group IL_95727.1
Basepair signature:
|
0.00 | -324.83 | 11 | 11 |
Kink-turn |
| 319 |
Motif group IL_77045.1
Basepair signature:
|
0.00 | -325.27 | 10 | 9 |
Kink-turn |
| 320 |
Motif group IL_04346.10
Basepair signature:
|
0.00 | -326.19 | 11 | 11 |
8x7 Sarcin-Ricin; G-bulge |
| 321 |
Motif group IL_50730.2
Basepair signature:
|
0.00 | -326.85 | 6 | 6 |
Triple sheared |
| 322 |
Motif group IL_80604.6
Basepair signature:
|
0.00 | -327.34 | 11 | 11 |
|
| 323 |
Motif group IL_73002.1
Basepair signature:
|
0.00 | -328.93 | 15 | 14 |
|
| 324 |
Motif group IL_61299.4
Basepair signature:
|
0.00 | -330.03 | 6 | 5 |
|
| 325 |
Motif group IL_64900.1
Basepair signature:
|
0.00 | -330.14 | 11 | 11 |
Kink-turn |
| 326 |
Motif group IL_47078.3
Basepair signature:
|
0.00 | -330.89 | 5 | 3 |
Minor groove platform |
| 327 |
Motif group IL_60657.1
Basepair signature:
|
0.00 | -331.68 | 13 | 12 |
|
| 328 |
Motif group IL_59724.1
Basepair signature:
|
0.00 | -332.05 | 12 | 11 |
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge |
| 329 |
Motif group IL_64403.1
Basepair signature:
|
0.00 | -333.04 | 13 | 12 |
|
| 330 |
Motif group IL_19048.1
Basepair signature:
|
0.00 | -333.50 | 12 | 11 |
|
| 331 |
Motif group IL_41203.4
Basepair signature:
|
0.00 | -334.47 | 7 | 6 |
SSU/LSU pseudoknot |
| 332 |
Motif group IL_74746.1
Basepair signature:
|
0.00 | -334.95 | 12 | 12 |
|
| 333 |
Motif group IL_82426.6
Basepair signature:
|
0.00 | -336.82 | 13 | 12 |
|
| 334 |
Motif group IL_37015.1
Basepair signature:
|
0.00 | -337.75 | 10 | 10 |
Kink-turn |
| 335 |
Motif group IL_84694.2
Basepair signature:
|
0.00 | -339.67 | 13 | 13 |
tSH-tHW-tHH-tHS |
| 336 |
Motif group IL_49971.1
Basepair signature:
|
0.00 | -339.88 | 10 | 8 |
|
| 337 |
Motif group IL_43140.1
Basepair signature:
|
0.00 | -340.38 | 11 | 8 |
|
| 338 |
Motif group IL_15107.1
Basepair signature:
|
0.00 | -342.85 | 15 | 15 |
|
| 339 |
Motif group IL_28026.3
Basepair signature:
|
0.00 | -346.98 | 12 | 11 |
|
| 340 |
Motif group IL_04307.1
Basepair signature:
|
0.00 | -348.38 | 13 | 12 |
|
| 341 |
Motif group IL_87290.1
Basepair signature:
|
0.00 | -350.31 | 17 | 16 |
Kink-turn related |
| 342 |
Motif group IL_81392.1
Basepair signature:
|
0.00 | -351.66 | 17 | 16 |
|
| 343 |
Motif group IL_54050.1
Basepair signature:
|
0.00 | -353.98 | 12 | 11 |
|
| 344 |
Motif group IL_42218.2
Basepair signature:
|
0.00 | -354.47 | 13 | 12 |
|
| 345 |
Motif group IL_42231.1
Basepair signature:
|
0.00 | -359.70 | 13 | 13 |
|
| 346 |
Motif group IL_89047.1
Basepair signature:
|
0.00 | -360.93 | 13 | 13 |
|
| 347 |
Motif group IL_65653.1
Basepair signature:
|
0.00 | -364.58 | 15 | 14 |
|
| 348 |
Motif group IL_43467.1
Basepair signature:
|
0.00 | -365.03 | 16 | 15 |
Pseudoknot |
| 349 |
Motif group IL_05472.1
Basepair signature:
|
0.00 | -367.38 | 13 | 12 |
|
| 350 |
Motif group IL_43547.1
Basepair signature:
|
0.00 | -368.06 | 15 | 14 |
10x8 Sarcin-Ricin; G-bulge |
| 351 |
Motif group IL_81731.1
Basepair signature:
|
0.00 | -370.12 | 14 | 13 |
|
| 352 |
Motif group IL_57741.1
Basepair signature:
|
0.00 | -370.15 | 13 | 13 |
|
| 353 |
Motif group IL_59049.1
Basepair signature:
|
0.00 | -370.19 | 14 | 13 |
|
| 354 |
Motif group IL_17973.1
Basepair signature:
|
0.00 | -370.44 | 17 | 16 |
|
| 355 |
Motif group IL_34470.3
Basepair signature:
|
0.00 | -371.10 | 13 | 13 |
9x8 Sarcin-Ricin with GA cWW pair; G-bulge |
| 356 |
Motif group IL_28304.1
Basepair signature:
|
0.00 | -374.26 | 14 | 14 |
|
| 357 |
Motif group IL_79846.1
Basepair signature:
|
0.00 | -375.69 | 16 | 15 |
|
| 358 |
Motif group IL_29357.1
Basepair signature:
|
0.00 | -376.32 | 15 | 15 |
|
| 359 |
Motif group IL_19852.1
Basepair signature:
|
0.00 | -376.97 | 11 | 9 |
Part of G-quadruplex |
| 360 |
Motif group IL_04073.1
Basepair signature:
|
0.00 | -377.23 | 16 | 16 |
|
| 361 |
Motif group IL_73700.1
Basepair signature:
|
0.00 | -379.12 | 13 | 12 |
|
| 362 |
Motif group IL_36729.1
Basepair signature:
|
0.00 | -385.09 | 14 | 13 |
|
| 363 |
Motif group IL_91698.1
Basepair signature:
|
0.00 | -385.74 | 14 | 13 |
|
| 364 |
Motif group IL_21630.1
Basepair signature:
|
0.00 | -388.21 | 14 | 13 |
|
| 365 |
Motif group IL_67623.1
Basepair signature:
|
0.00 | -388.80 | 11 | 10 |
Minor groove platform related |
| 366 |
Motif group IL_49714.1
Basepair signature:
|
0.00 | -392.93 | 7 | 5 |
Major groove intercalation |
| 367 |
Motif group IL_17069.5
Basepair signature:
|
0.00 | -394.16 | 12 | 12 |
Kink-turn related |
| 368 |
Motif group IL_61249.1
Basepair signature:
|
0.00 | -400.28 | 16 | 16 |
|
| 369 |
Motif group IL_38394.1
Basepair signature:
|
0.00 | -401.85 | 7 | 6 |
|
| 370 |
Motif group IL_60448.1
Basepair signature:
|
0.00 | -402.17 | 17 | 16 |
|
| 371 |
Motif group IL_06029.1
Basepair signature:
|
0.00 | -408.03 | 19 | 18 |
Kink-turn |
| 372 |
Motif group IL_31504.1
Basepair signature:
|
0.00 | -417.03 | 17 | 16 |
|
| 373 |
Motif group IL_56455.6
Basepair signature:
|
0.00 | -417.17 | 14 | 14 |
Bacterial 5S Loop E |
| 374 |
Motif group IL_70670.1
Basepair signature:
|
0.00 | -422.70 | 15 | 14 |
9x9 Sarcin-Ricin with pseudoknotted region; G-bulge |
| 375 |
Motif group IL_06549.2
Basepair signature:
|
0.00 | -424.43 | 6 | 4 |
|
| 376 |
Motif group IL_93889.1
Basepair signature:
|
0.00 | -425.92 | 17 | 17 |
|
| 377 |
Motif group IL_30441.1
Basepair signature:
|
0.00 | -430.98 | 14 | 13 |
|
| 378 |
Motif group IL_46174.3
Basepair signature:
|
0.00 | -431.01 | 10 | 10 |
Kink-turn with non-sequential stacking |
| 379 |
Motif group IL_42032.1
Basepair signature:
|
0.00 | -432.02 | 8 | 7 |
|
| 380 |
Motif group IL_96303.1
Basepair signature:
|
0.00 | -432.17 | 14 | 13 |
|
| 381 |
Motif group IL_85879.1
Basepair signature:
|
0.00 | -433.73 | 14 | 14 |
|
| 382 |
Motif group IL_66663.1
Basepair signature:
|
0.00 | -434.03 | 14 | 14 |
|
| 383 |
Motif group IL_17765.1
Basepair signature:
|
0.00 | -445.60 | 12 | 11 |
|
| 384 |
Motif group IL_44624.1
Basepair signature:
|
0.00 | -449.94 | 12 | 11 |
|
| 385 |
Motif group IL_20463.1
Basepair signature:
|
0.00 | -450.58 | 15 | 14 |
7x11 Sarcin-Ricin with pseudoknotted region; G-bulge |
| 386 |
Motif group IL_19516.1
Basepair signature:
|
0.00 | -452.59 | 16 | 15 |
Pseudoknot |
| 387 |
Motif group IL_76460.1
Basepair signature:
|
0.00 | -452.92 | 19 | 18 |
|
| 388 |
Motif group IL_15991.1
Basepair signature:
|
0.00 | -456.07 | 19 | 19 |
|
| 389 |
Motif group IL_86012.1
Basepair signature:
|
0.00 | -456.57 | 12 | 12 |
|
| 390 |
Motif group IL_13394.1
Basepair signature:
|
0.00 | -467.62 | 19 | 19 |
|
| 391 |
Motif group IL_50715.3
Basepair signature:
|
0.00 | -479.04 | 19 | 19 |
|
| 392 |
Motif group IL_24134.1
Basepair signature:
|
0.00 | -489.49 | 10 | 8 |
Kink-turn |
| 393 |
Motif group IL_75283.2
Basepair signature:
|
0.00 | -496.59 | 15 | 14 |
|
| 394 |
Motif group IL_53581.1
Basepair signature:
|
0.00 | -517.54 | 20 | 19 |
Kink-turn related |
| 395 |
Motif group IL_60797.1
Basepair signature:
|
0.00 | -521.60 | 17 | 16 |
|
| 396 |
Motif group IL_58103.11
Basepair signature:
|
0.00 | -540.79 | 7 | 6 |
Symmetric double minor groove platform |
| 397 |
Motif group IL_80298.1
Basepair signature:
|
0.00 | -555.24 | 23 | 22 |
|
| 398 |
Motif group IL_64858.3
Basepair signature:
|
0.00 | -569.38 | 21 | 21 |
|
| 399 |
Motif group IL_81516.2
Basepair signature:
|
0.00 | -580.33 | 15 | 14 |
|
| 400 |
Motif group IL_34739.3
Basepair signature:
|
0.00 | -582.78 | 22 | 22 |
|
| 401 |
Motif group IL_29826.1
Basepair signature:
|
0.00 | -611.85 | 24 | 24 |
|
| 402 |
Motif group IL_83149.1
Basepair signature:
|
0.00 | -630.32 | 25 | 24 |
|
| 403 |
Motif group IL_84409.1
Basepair signature:
|
0.00 | -642.55 | 21 | 21 |
|
| 404 |
Motif group IL_22564.1
Basepair signature:
|
0.00 | -6246.19 | 9 | 9 |
|
| 405 |
Motif group IL_26222.2
Basepair signature:
|
0.00 | -6997.51 | 7 | 5 |
C-loop with bulged stacked A's |
| 406 |
Motif group IL_63596.11
Basepair signature:
|
0.00 | -8873.23 | 5 | 4 |
C-loop |
| 407 |
Motif group IL_03109.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 3 |
C-loop |
| 408 |
Motif group IL_20245.1
Basepair signature:
|
0.00 | -9999.00 | 22 | 21 |
|
| 409 |
Motif group IL_45896.1
Basepair signature:
|
0.00 | -9999.00 | 18 | 18 |
|
| 410 |
Motif group IL_54737.1
Basepair signature:
|
0.00 | -9999.00 | 23 | 23 |
|
| 411 |
Motif group IL_83150.2
Basepair signature:
|
0.00 | -9999.00 | 6 | 4 |
|