RNA 3D Hub

JAR3D Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 26 Internal loop

Column numbers: 449-465, 467-487 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    U---------------C*GUG-----------------A   34

    
    C---------------U*U-------------------G   33

    
    G---------------C*GUG-----------------C   24

    
    C---------------C*GUG-----------------G   18

    
    U---------------G*AUA-----------------G   14

    
    U---------------G*AUA-----------------A   13

    
    A---------------G*AA------------------U    9

    
    C---------------A*U-------------------G    9

    
    G---------------A*GUU-----------------C    7

    
    U---------------U*AAA-----------------G    7

    
    CU--------------C*AAA----------------GG    6

    
    GU--------------C*AAA----------------GC    6

    
    GU--------------G*AUA----------------GC    6

    
    A---------------C*GUG-----------------U    6

    
    C---------------G*U-------------------G    6

    
    UCACA-----------G*AA--------------UGGGG    5

    
    GU--------------U*AAUC---------------GC    4

    
    C---------------G*G-------------------G    4

    
    UG--------------G*AA-----------------CA    3

    
    U---------------G*GAA-----------------G    3

    
    U---------------U*U-------------------A    3

    
    G---------------C*GUG-----------------U    2

    
    G---------------C*UGU-----------------C    2

    
    U---------------C*AAA-----------------G    2

    
    U---------------U*CUA-----------------A    2

    
    C---------------A*AC------------------G    2

    
    C---------------G*AA------------------G    2

    
    U---------------A*GC------------------A    2

    
    AGUUUUGAGUUGACUCU*AA---GAGUUGAGGAGAAAAC    1

    
    AAGGGGAUUU------A*GGA--------AAA---CC-U    1

    
    UCACA-----------G*CAAA------------UGGGA    1

    
    UGGCA-----------G*AAUA------------UGUUG    1

    
    CCACA-----------G*AA--------------UGGGG    1

    
    UCU-------------C*AAA---------------GGA    1

    
    C---------------U*GAGAU--------------AG    1

    
    AU--------------G*AAU----------------AU    1

    
    CC--------------C*GAA----------------GG    1

    
    CU--------------G*ACA----------------GG    1

    
    U---------------G*AUAAG---------------A    1

    
    UU--------------C*AGG----------------AA    1

    
    UU--------------U*UAU----------------AG    1

    
    C---------------U*UUG----------------AG    1

    
    UG--------------U*GG-----------------UA    1

    
    UU--------------G*GA-----------------UA    1

    
    A---------------C*CGG-----------------U    1

    
    A---------------C*GUA----------------A-    1

    
    C---------------A*CUU-----------------G    1

    
    C---------------G*CAG-----------------G    1

    
    C---------------G*UGA-----------------G    1

    
    C---------------U*AUA-----------------C    1

    
    C---------------U*GCA-----------------G    1

    
    G---------------A*UCG-----------------U    1

    
    G---------------G*AUA-----------------C    1

    
    U---------------C*GUG-----------------C    1

    
    U---------------G*AAA-----------------G    1

    
    U---------------G*UAA-----------------G    1

    
    U---------------U*ACA-----------------G    1

    
    U---------------U*AUA-----------------A    1

    
    U---------------U*AUA-----------------G    1

    
    U---------------U*UUA-----------------A    1

    
    A---------------C*GU------------------U    1

    
    C---------------A*A------------------UG    1

    
    C---------------A*AU------------------G    1

    
    G---------------G*AA------------------C    1

    
    A---------------A*U-------------------U    1

    
    U---------------A*G-------------------A    1

    
    U---------------G*U-------------------A    1

    
    U---------------U*U-------------------G    1

    
    Omitted sequenced and counts

    
    -----------------*---------------------    7

    
    ----------------G*GAA------------------    3

    
    ----------------U*UG-------------------    2

    
    ----------------C*CUG------------------    1

    
    ----------------C*GUG------------------    1

    
    ----------------A*GU-------------------    1

    
    ----------------A*UU-------------------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

67.15 -388.51 3 1

Intercalated cWS

2

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

65.69 -379.69 3 1

3

Motif group IL_84476.1

Basepair signature:
cWW-cWW

65.33 -185.40 3 1

Multiple bulged bases

4

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

65.33 -382.72 2 0

Major groove intercalation

5

Motif group IL_82107.4

Basepair signature:
cWW-cWW

59.49 -183.39 3 1

Multiple bulged bases

6

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

58.76 -414.16 4 1

7

Motif group IL_42626.2

Basepair signature:
cWW-cWW

52.92 -445.45 3 1

8

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

51.82 -411.11 3 1

9

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

51.82 -412.27 5 1

10

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

51.46 -485.59 3 1

Minor groove platform

11

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

50.73 -431.00 3 1

12

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

46.35 -447.55 4 1

Major groove platform with intercalated tWH

13

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

44.16 -434.27 5 2

14

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

41.24 -426.29 2 1

Single stack bend

15

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

35.04 -433.90 4 2

16

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

32.85 -463.65 6 3

17

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

27.74 -333.68 2 1

Major groove platform

18

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

26.64 -518.91 3 1

Major groove platform; stack outside cWW

19

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

24.45 -467.28 2 1

Major groove platform

20

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

19.34 -429.44 5 2

21

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

18.98 -512.93 3 1

Major groove minor groove platform; mini C-loop

22

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

18.25 -431.14 4 2

23

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

17.88 -496.44 3 1

Major groove platform with intercalation

24

Motif group IL_42771.1

Basepair signature:
cWW-cWW

13.50 -472.95 4 2

Multiple bulged bases

25

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

12.41 -2809.08 4 2

26

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

10.58 -451.56 2 1

Single stack bend

27

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

10.58 -456.86 5 1

28

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

10.22 -488.86 2 2

Single bulged A

29

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

10.22 -491.94 2 1

Minor groove platform

30

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

8.39 -135.79 6 3

31

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

7.30 -477.34 4 1

Minor groove platform, major groove intercalation

32

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

7.30 -526.94 4 2

33

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

6.93 -141.90 5 3

34

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

6.93 -537.26 5 2

35

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

6.57 -470.09 2 1

Single bulged G

36

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

5.47 -505.29 3 2

Single bulged C

37

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

5.11 -228.28 3 2

Stack and bulge

38

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

4.74 -216.41 4 2

39

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

4.38 -190.50 6 3

40

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

4.38 -473.09 1 1

Single bulged U

41

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

3.65 -382.63 5 2

Multiple bulged bases

42

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

3.28 -208.29 5 3

Major groove minor groove platform with intercalation; mini C-loop

43

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

2.19 -195.29 3 2

Isolated non-canonical cWW pair

44

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

1.82 -154.62 3 2

45

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

1.82 -230.56 4 3

46

Motif group IL_83389.2

Basepair signature:
cWW-cWW

1.82 -244.66 5 2

47

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

1.46 -163.49 7 5

48

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

1.46 -243.78 3 2

Isolated cWS basepair

49

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

1.09 -199.50 4 2

Isolated non-canonical cWW pair

50

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

1.09 -230.73 3 2

Isolated non-canonical cWW pair

51

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

1.09 -267.25 5 3

52

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.73 -169.42 5 3

53

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.73 -170.50 5 4

54

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.73 -181.78 5 3

55

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.73 -211.20 4 3

56

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.73 -232.68 4 2

57

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.73 -428.79 5 3

Bulged stacked bases

58

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.36 -139.18 6 3

59

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.36 -154.58 4 2

60

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.36 -167.68 6 5

Decoding loop related

61

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.36 -193.78 6 3

62

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.36 -204.51 4 2.5

63

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.36 -218.59 6 4

64

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.36 -222.79 6 4

65

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.36 -239.28 5 3

66

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.36 -258.68 5 3

67

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.36 -333.05 6 3

68

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.36 -333.33 6 4

69

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.36 -358.07 6 4

70

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.36 -686.22 6 4

Major groove intercalation

71

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -129.17 7 5

72

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -132.58 6 3

73

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -136.10 6 4

74

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -140.24 7 5

Kink-turn related

75

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -144.98 8 5

Pseudoknot

76

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -147.61 6 5

77

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -150.10 8 6

78

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -150.39 7 5

79

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -150.91 6 4

80

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -153.40 8 5

81

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -153.44 7 4

82

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -158.30 8 6

83

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -159.23 6 5

Intercalated tWH

84

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -160.30 7 5

85

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -166.70 6 4

86

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -167.36 7 4

87

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -167.54 6 5

88

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -167.65 7 5

89

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -169.47 8 6

90

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -171.10 8 7

91

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -171.86 8 7

tSH-tHW

92

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -171.90 8 5

93

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -172.06 7 5

94

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -172.17 6 5

95

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -173.71 7 5

96

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -174.03 8 6

97

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -174.85 9 6

98

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -175.06 7 5

99

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -175.14 7 5

100

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -175.61 9 7

101

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -175.92 7 5

102

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -177.33 8 5

103

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -177.68 6 5

104

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -178.21 6 4

105

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -180.06 8 6

Part of G-quadruplex

106

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -180.13 4 3

107

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -180.37 8 6

108

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -180.93 7 5

109

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -181.20 6 4

110

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -181.37 9 8

111

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -181.92 6 4

112

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -183.40 8 6

113

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -184.47 6 4

114

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -184.90 6 3

115

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -185.37 6 4

Receptor of 11-nt loop-receptor motif

116

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -186.25 3 2

Isolated non-canonical cWW contact

117

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -187.60 6 3

118

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -187.69 7 4

119

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -188.56 6 5

tSH-tHW

120

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -188.97 7 6

Vitamin B12 Aptamer

121

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -189.12 7 5

122

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -189.51 8 6

123

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -190.19 6 4

124

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -190.80 6 3

Isolated non-canonical cWW pair

125

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -191.39 9 7

Reverse turn

126

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -191.44 9 7

127

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -192.91 7 4

Multiple bulged bases

128

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -194.14 5 3

129

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -194.54 7 6

130

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -194.92 7 6

131

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -195.66 4 2

132

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -196.09 7 6

133

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -196.11 6 4

134

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -197.09 10 7

135

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -198.91 8 5

cWH basepair with bulged bases

136

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -200.50 7 5

137

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -201.09 9 7

138

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -202.57 7 6

UAA/GAN related

139

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -202.69 9 7

140

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -202.96 8 7

UAA/GAN with extra stack

141

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -203.07 6 5

142

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -203.94 9 7

143

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -204.26 9 8

144

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -205.13 9 7

Reverse kink-turn

145

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -207.53 10 7

146

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -207.61 8 6

147

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -207.94 5 3

148

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -207.97 6 4

149

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -208.54 8 6

150

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -209.84 9 7

151

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -212.71 8 6

152

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -212.92 7 5

180 degree turn

153

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -212.94 8 7

154

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -213.67 7 5

AAA cross-strand stack

155

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -214.56 10 7

156

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -214.87 9.5 7

Reverse kink-turn related

157

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -216.09 8 7

Sarcin-Ricin target in LSU H95; G-bulge

158

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -216.22 6 4

159

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -216.31 10 8

160

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -216.33 8 6

Kink-turn related

161

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -219.55 10 8

Kink-turn related

162

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -219.58 8 7

163

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -219.64 9 7

tHW-tHW cross-strand stack

164

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -220.07 8 7

Kink-turn

165

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -221.15 4 2

166

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -221.53 8 6

Triple sheared related

167

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -221.59 9 7

168

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -222.91 8 6

Kink-turn

169

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -223.82 4 3

Decoding loop related

170

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -224.14 6 4

Receptor of 11-nt loop-receptor motif

171

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -225.03 8 6

Other IL

172

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -225.48 9 8

173

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -226.62 11 8

8x6 Sarcin-Ricin with inserted A; G-bulge

174

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -228.33 7 5

175

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -229.16 8 6

6x5 Sarcin-Ricin; G-bulge

176

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -230.07 10 9

177

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -230.17 10 8

178

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -230.72 9 8

179

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -231.41 7 5

180

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -231.68 10 8

181

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -232.52 8 6

UAA/GAN with tHH

182

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -232.61 10 9

183

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -232.95 9 7

184

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -233.05 9 8

185

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -233.15 10 8

186

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -233.99 9 8

tWH-tWH-tHW-tHW

187

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -234.69 7 5

188

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -235.43 7 5

Kink-turn from U4

189

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -235.64 10 8

190

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -236.00 5 3

191

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -236.15 8 6

Kink-turn with embedded cWW pair

192

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -236.25 10 9

193

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -237.19 5 3

194

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -238.47 10 8

195

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -241.24 9 7

196

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -241.75 6 3

197

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -242.76 10 8

198

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -243.44 8 7

199

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -244.01 11 10

200

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -244.39 5 3

201

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -245.25 11 9

202

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -245.58 7 5

203

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -245.73 10 10

204

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -245.91 10 8

205

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -246.04 5 3

206

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -246.87 10 8

207

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -247.21 5 3

Tandem non-canonical cWW pairs

208

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -247.62 10 9

209

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -248.34 4 2

Isolated tWW turn

210

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -248.74 8 6

Kink-turn related

211

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -248.80 5 3

Double sheared

212

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -249.05 8 8

213

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -249.56 5 4

214

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -250.49 9 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

215

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -250.63 6 5

216

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -250.91 11 10

217

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -252.94 5 2

Isolated tHS basepair with bulges

218

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -254.36 9 8

tSH-tHS-tHW

219

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -254.58 8 7

Double sheared; A in syn; two near cWW pairs

220

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -254.94 11 11

221

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -255.90 5 4

222

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -256.37 8 7

223

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -257.55 11 10

224

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -258.06 10 8

225

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -258.83 6 4

226

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -260.32 5 4

227

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -260.80 2.5 2

Isolated non-canonical cWW pair

228

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -262.91 7 6

tSH-tHH-tHS

229

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -264.70 10 8

230

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -265.90 9 9

8x6 Sarcin-Ricin with inserted Y; G-bulge

231

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -268.17 12 10

232

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -268.79 7 5

cWH basepair and non-canonical AC

233

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -269.21 10 8

234

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -272.78 9 8

tSH-tSH-tHH-tHS

235

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -273.32 11 9

236

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -273.43 8 7

7x6 Sarcin-Ricin; G-bulge

237

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -275.56 5 4

tSH-tHW

238

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -275.79 10 9

8x6 Sarcin-Ricin with bulged A; G-bulge

239

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -276.10 12 11

240

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -278.91 6 4

241

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -279.14 8 7

242

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -279.70 10 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

243

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -279.95 3 2

Isolated cWH basepair

244

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -282.17 11 10

245

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -282.72 5 5

UAA/GAN

246

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -283.02 10 9

247

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -284.07 9 8

Triple sheared with non-canonical cWW

248

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -284.51 11 10

249

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -285.55 9 7

Other IL

250

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -285.67 6 4

251

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -288.36 8 7

Kink-turn

252

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -288.47 9 8

253

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -288.59 14 13

254

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -292.27 12 11

255

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -299.22 5 3

256

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -299.65 8 7

257

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -299.97 12 10

258

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -300.59 12 10

259

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -301.09 6 3

260

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -303.02 12 11

261

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -304.58 6 5

UAA/GAN

262

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -304.90 7 6

263

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -305.52 6 4

264

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -305.93 11 9

8x7 Sarcin-Ricin; G-bulge

265

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -306.28 11 9

Kink-turn

266

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -306.81 12 11

tSH-tHW-tHH-tHS

267

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -306.82 7 7

UAA/GAN with extra cWW

268

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -308.83 14 13

269

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -312.41 10 8

Minor groove platform related

270

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -312.71 12 10

271

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -314.77 12 11

272

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -315.48 5 4

Other IL

273

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -315.84 4 2

Tandem non-canonical cWW pairs

274

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -316.87 4 3

275

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -317.88 11 10

276

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -318.78 9 9

8x7 Sarcin-Ricin; G-bulge

277

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -319.02 4 3

Tandem non-canonical cWW pairs

278

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -321.55 13 11

279

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -321.76 16 15

280

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -321.85 12 11

281

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -324.24 8 7

tSH-tWH-tHS-cWW

282

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -324.82 14 12

283

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -326.68 13 12

10x8 Sarcin-Ricin; G-bulge

284

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -327.52 9 8

Kink-turn

285

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -328.22 15 14

Pseudoknot

286

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -329.58 6 3

287

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -330.18 11 10

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

288

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -330.48 10 8

Kink-turn

289

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -330.94 10 9

290

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -331.39 11 10

Kink-turn

291

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -332.35 13 11

292

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -333.37 13 11

293

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -334.45 12 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

294

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -334.76 5 4

UAA/GAN related

295

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -334.94 7 4

Minor groove platform

296

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -335.23 15 14

297

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -337.80 9 7

Kink-turn

298

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -338.04 13 11

299

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -338.55 13 11

300

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -339.81 4 4

Double sheared

301

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -340.86 6 3

8-nt loop receptor

302

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -344.38 11 8

Reverse kink-turn related

303

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -344.57 16 14

Kink-turn related

304

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -344.62 9 8

tSH-tHW-tWH-tHS

305

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -346.42 5 4

UAA/GAN variation

306

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -349.30 6 4

Major groove intercalation

307

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -350.54 9 7

Kink-turn

308

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -350.65 12 11

309

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -353.02 8 6

310

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -353.56 7 5

Triple sheared

311

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -355.03 13 11

312

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -356.27 16 14

313

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -356.49 8 5

314

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -357.13 6 3

315

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -360.44 8 7

Kink-turn

316

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -362.32 10 9

317

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -363.08 14 13

318

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -364.61 5 3

319

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -365.20 13 11

320

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -365.34 6 5

Double sheared with non-canonical cWW

321

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -365.64 5 3

Minor groove platform

322

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -367.69 8 5

323

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -373.11 13 12

324

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -373.55 13 12

325

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -375.01 11 10

326

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -376.00 15 14

327

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -377.06 6 4

Triple non-canonical cWW pairs

328

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -377.56 14 13

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

329

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -378.63 7 5

330

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -378.91 16 14

331

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -379.55 12 11

332

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -380.78 9 7

333

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -381.36 13 11

334

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -383.74 18 16

Kink-turn

335

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -388.22 11 10

336

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -388.49 5 3

337

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -391.03 16 16

338

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -391.07 13 12

339

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -391.36 6 3

340

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -391.85 7 6

Minor groove platform

341

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -392.30 9 7

342

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -392.70 13 11

343

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -393.85 7 5

344

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -394.16 8 7

Quadruple sheared

345

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -395.11 8 6

346

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -396.96 13 11

347

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -397.41 6 4

348

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -397.95 10 9

Kink-turn

349

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -401.50 2.5 2

Isolated non-canonical cWW pair

350

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -401.71 8 6

351

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -402.57 9 6

352

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -403.19 7 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

353

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -404.36 7 5

354

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -407.60 6 4

355

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -416.32 8 7

356

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -420.13 6 5

tSH-tWH-tHS

357

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -420.22 13 12

358

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -421.30 14 13

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

359

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -423.19 13 12

360

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -425.47 6 4

361

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -426.63 18 16

362

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -426.79 18 17

363

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -428.79 9 7

364

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -429.12 15 14

Pseudoknot

365

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -434.47 17 17

366

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -434.69 11 10

Kink-turn related

367

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -436.85 10 7

368

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -437.22 9 7

369

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -449.48 18 18

370

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -453.45 12 9

Pseudoknot

371

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -458.14 6 4

372

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -460.44 13 13

Bacterial 5S Loop E

373

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -462.42 9 7

374

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -465.15 6 5

Triple sheared

375

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -474.15 5 3

376

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -480.28 17 15

377

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -481.08 8 5

Symmetric double minor groove platform

378

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -498.80 4 2

Left turn

379

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -500.90 16 15

380

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -503.81 16 15

381

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -510.63 8 6

382

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -511.16 18 17

Kink-turn related

383

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -515.49 9 6

384

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -543.09 21 20

385

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -546.59 6 5

SSU/LSU pseudoknot

386

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -549.40 21 20

387

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -559.66 20 19

388

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -566.85 23 22

389

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -579.92 23 22

390

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -586.20 8 5

391

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -779.03 8 5

392

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -1003.70 9 9

Kink-turn with non-sequential stacking

393

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -1007.29 11 10

394

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -1057.43 9 7

395

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -1058.68 9 7

396

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -1154.55 14 12

397

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -1177.76 13 11

Part of G-quadruplex

398

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -1224.15 11 11

399

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -1229.29 11 11

400

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -1247.42 19 19

401

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -1328.81 15 14

402

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -1441.32 9 7

Kink-turn

403

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -1447.36 7 4

404

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6033.89 9 8

405

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6964.66 7 5

C-loop with bulged stacked A's

406

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -7894.87 5 3

C-loop

407

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9730.15 4 2

C-loop

408

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9761.37 5 4

409

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 23 20

410

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 18 16

411

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 23 22

Coloring options: