RNA 3D Hub

JAR3D Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 30 Internal loop

Column numbers: 525-539, 562-568 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    U-------------A*U-----A   25

    
    U-------------G*C-----A   12

    
    A-------------G*C-----G    9

    
    A-------------U*A-----U    9

    
    U-------------U*A-----A    8

    
    CUA-----------U*A---UAG    6

    
    A-------------U*A----UG    5

    
    GU------------A*G-----C    4

    
    U-------------U*G-----U    4

    
    AAU-----------U*A----GG    3

    
    UAA-----------G*U----UA    3

    
    AU------------G*U----AU    3

    
    AU------------U*A----AU    3

    
    GU------------A*U----AU    3

    
    UA------------U*A----UA    3

    
    C-------------G*C-----A    3

    
    G-------------C*G-----C    3

    
    UUUUGACCUA-AUAU*A-UUGGA    2

    
    AAGA----------U*A----CA    2

    
    AUGA----------C*G----GA    2

    
    UA------------A*U----UA    2

    
    A-------------C*G----CA    2

    
    AA------------C*G-----G    2

    
    A-------------C*G-----U    2

    
    A-------------G*C-----A    2

    
    A-------------G*U-----U    2

    
    A-------------U*G-----U    2

    
    C-------------U*A-----G    2

    
    U-------------C*G-----A    2

    
    UUUUGACCUAAUAAU*-AUUGGA    1

    
    GUUGGG-----AU-G*GC----U    1

    
    AUG-----------C*ACUCACU    1

    
    AUA-----------U*A-UAUAA    1

    
    AUAA----------A*U---UAU    1

    
    CU------------G*C-UUUAU    1

    
    UAAU----------A*G---UUA    1

    
    AUGA----------U*G----GA    1

    
    CUAA----------C*G----AG    1

    
    GAAU----------G*U----UU    1

    
    GUAA----------C*G----AC    1

    
    UAA-----------A*U-GC--A    1

    
    UGC-----------G*C---ACA    1

    
    UGC-----------G*C---ACG    1

    
    A-------------C*G--UAAA    1

    
    AGA-----------C*G----CA    1

    
    AUA-----------A*U----AU    1

    
    C-------------U*AUAU--A    1

    
    CA------------G*U---AUG    1

    
    CAAA----------G*C-----C    1

    
    CCU-----------U*A----UU    1

    
    GAAA----------C*G-----U    1

    
    GC------------U*G---UGC    1

    
    GG------------C*G---UGC    1

    
    UAA-----------U*A----GA    1

    
    UUG-----------C*G----AA    1

    
    A-------------C*G---UGA    1

    
    A-------------U*A---UAA    1

    
    AA------------G*C----UU    1

    
    AC------------C*G----AG    1

    
    AG------------A*U----UU    1

    
    AG------------U*A----CG    1

    
    AU------------A*U----AU    1

    
    AU------------A*U----GU    1

    
    AU------------U*A----AC    1

    
    AU------------U*G----AU    1

    
    C-------------U*A---GUG    1

    
    CA------------G*C----AG    1

    
    CA------------U*A----UG    1

    
    CC------------A*U----GG    1

    
    GU------------C*G----GC    1

    
    GU------------G*C----AU    1

    
    GU------------G*G----CA    1

    
    UA------------U*G----UA    1

    
    UAU-----------C*G-----A    1

    
    UAU-----------U*A-----A    1

    
    UC------------G*C----AA    1

    
    UG------------U*A----UG    1

    
    UU------------G*C----AA    1

    
    UU------------U*A----UC    1

    
    UU------------U*G----UG    1

    
    -G------------A*U----UA    1

    
    A-------------C*G----AU    1

    
    CA------------G*U-----G    1

    
    CU------------G*U-----A    1

    
    G-------------U*A----GG    1

    
    G-------------U*A----UG    1

    
    GA------------A*U-----U    1

    
    GC------------A*U-----A    1

    
    GG------------C*G-----U    1

    
    U-------------U*A----AG    1

    
    U-------------U*G----GU    1

    
    -A------------G*C----A-    1

    
    A-------------A*U-----U    1

    
    A-------------G*C-----U    1

    
    A-------------U*A-----G    1

    
    C-------------A*U-----G    1

    
    C-------------U*A-----U    1

    
    G-------------C*A-----C    1

    
    G-------------G*U-----U    1

    
    G-------------U*A-----U    1

    
    G-------------U*G-----C    1

    
    G-------------U*G-----U    1

    
    U-------------G*C-----C    1

    
    U-------------U*G-----A    1

    
    Omitted sequenced and counts

    
    --------------C*G-----A   36

    
    --------------U*A------   14

    
    --------------C*G------    7

    
    ---------------*-------    5

    
    U-------------G*A------    4

    
    --------------U*A----UG    2

    
    --------------G*U-----A    2

    
    --------------U*G------    2

    
    --------------A*UAU----    1

    
    --------------C*G----AG    1

    
    --------------U*A----UU    1

    
    --------------C*G-----U    1

    
    --------------G*C-----A    1

    
    --------------G*C-----G    1

    
    --------------G*U-----G    1

    
    --------------U*A-----A    1

    
    G-------------U*A------    1

    
    --------------A*U------    1

    
    --------------G*C------    1

    
    C--------------*------A    1

    
    ---------------*------A    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

56.59 -224.85 3 1

Stack and bulge

2

Motif group IL_42771.1

Basepair signature:
cWW-cWW

56.10 -277.13 3 1

Multiple bulged bases

3

Motif group IL_84476.1

Basepair signature:
cWW-cWW

47.32 -243.28 3 2

Multiple bulged bases

4

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

45.85 -201.36 3 1

Major groove platform

5

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

45.37 -254.06 4 1

Intercalated cWS

6

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

40.98 -253.83 4 1

7

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

40.49 -262.42 3 1

Major groove intercalation

8

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

39.02 -267.19 4 1

9

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

39.02 -269.17 2 1

Single stack bend

10

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

37.56 -273.72 3 1

Single stack bend

11

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

37.56 -285.46 5 1

12

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

37.07 -297.20 2 1

Single bulged G

13

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

33.66 -305.11 2 1

Single bulged C

14

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

20.98 -199.37 4 2

15

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

19.02 -242.15 3 2

Isolated non-canonical cWW pair

16

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

18.54 -217.99 3 2

Isolated non-canonical cWW pair

17

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

18.54 -223.37 4 2

Isolated non-canonical cWW pair

18

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

18.54 -236.97 2 2

Isolated cWS basepair

19

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

16.10 -244.15 4 3

20

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

15.61 -242.25 2 2

Isolated non-canonical cWW pair

21

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

14.15 -247.12 3 2

Isolated tWW turn

22

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

12.68 -227.04 3 2

Isolated non-canonical cWW contact

23

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

12.68 -253.92 2 2

Isolated cWH basepair

24

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

10.73 -316.23 2 2

Isolated non-canonical cWW pair

25

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

9.76 -266.41 4 2

Isolated tHS basepair with bulges

26

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

8.78 -302.05 2 1

Single bulged U

27

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

7.32 -272.34 4 3

28

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

6.83 -474.99 2 1

Major groove platform

29

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

6.34 -303.92 2 1

Single bulged A

30

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

6.34 -521.09 3 1

31

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

5.85 -306.18 4 3

32

Motif group IL_83389.2

Basepair signature:
cWW-cWW

5.85 -437.77 4 3

33

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

5.37 -467.04 2 1

Minor groove platform

34

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

4.88 -499.48 5 1

35

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

4.39 -351.01 4 3

Tandem non-canonical cWW pairs

36

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

3.90 -279.48 5 4

Double sheared

37

Motif group IL_82107.4

Basepair signature:
cWW-cWW

3.90 -291.44 3 2

Multiple bulged bases

38

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

3.90 -304.39 4 3

39

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

3.90 -315.28 5 3

40

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

3.90 -342.12 5 5

tSH-tHW

41

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

3.41 -321.44 6 4

42

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

3.41 -330.65 5 3

43

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

3.41 -333.68 5 4

44

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

3.41 -375.95 4 4

Double sheared

45

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

3.41 -379.20 6 4

Minor groove platform

46

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

3.41 -425.42 5 3

Major groove minor groove platform with intercalation; mini C-loop

47

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

2.93 -297.87 4 3

Decoding loop related

48

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

2.93 -336.74 5 4

49

Motif group IL_42626.2

Basepair signature:
cWW-cWW

2.93 -606.86 3 2

50

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

2.44 -292.59 5 3

51

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

2.44 -316.36 4 2

52

Motif group IL_06549.2

Basepair signature:
cWW-cWW

2.44 -1423.88 5 4

53

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

1.95 -238.81 6 4

54

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

1.95 -255.07 5 3

55

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

1.95 -292.42 6 4

56

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

1.95 -312.65 6 3

57

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

1.95 -313.81 5 2

58

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

1.95 -317.15 5 2

59

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

1.95 -335.40 5 2

60

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

1.95 -437.81 6 4

Multiple bulged bases

61

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

1.95 -7257.86 4 2

62

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

1.46 -156.53 7 6

63

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

1.46 -212.97 5 4

64

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

1.46 -226.06 5 4

65

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

1.46 -226.33 7 5

66

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

1.46 -232.57 5 4

67

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

1.46 -253.33 6 5

Receptor of 11-nt loop-receptor motif

68

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

1.46 -291.92 5 4

69

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

1.46 -329.46 4 3

70

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

1.46 -329.51 4 2

71

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

1.46 -337.06 5 2

72

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

1.46 -337.55 4 2

73

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

1.46 -427.46 5 4

74

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.98 -128.38 6 5

75

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.98 -138.05 6 5

76

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.98 -144.33 6 4

77

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.98 -148.04 6 4

78

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.98 -178.36 6 5

79

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.98 -181.04 6 4

80

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.98 -194.36 7 5

Decoding loop related

81

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.98 -204.15 5 4

82

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.98 -226.53 5 5

83

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.98 -236.65 7 6

Kink-turn related

84

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.98 -242.85 5 4

85

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.98 -247.71 6 5

86

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.98 -259.84 5 4

87

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.98 -266.46 7 5

88

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.98 -283.93 5 5

89

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.98 -290.56 7 6

180 degree turn

90

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.98 -312.97 6 4

91

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.98 -323.31 6 4

92

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.98 -342.73 5 3

Bulged stacked bases

93

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.98 -568.27 4 2

Major groove platform with intercalation

94

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.98 -697.49 3 2

Minor groove platform

95

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.98 -707.36 3 2

Major groove minor groove platform; mini C-loop

96

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.98 -793.34 3 2

Major groove platform; stack outside cWW

97

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.49 -164.49 7 6

98

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.49 -181.54 6 5

Isolated non-canonical cWW pair

99

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.49 -187.71 6 6

tSH-tHW

100

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.49 -188.47 7 5

101

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.49 -197.55 7 6

102

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.49 -219.09 7 5

103

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.49 -229.70 6 6

AAA cross-strand stack

104

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.49 -234.43 6 5

105

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.49 -235.03 7 5

106

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.49 -251.26 6 5

UAA/GAN

107

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.49 -282.53 6 5

Receptor of 11-nt loop-receptor motif

108

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.49 -290.33 5 4

109

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.49 -308.73 5 3

110

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.49 -312.12 6 5

UAA/GAN related

111

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.49 -319.58 6 5

UAA/GAN variation

112

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.49 -353.01 4 2

113

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.49 -378.49 6 3

114

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.49 -378.83 6 3

115

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.49 -506.13 4 2

Major groove platform with intercalated tWH

116

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.49 -9999.00 5 3

C-loop

117

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -139.75 7 5

118

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -141.83 7 6

119

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -144.58 8 6

120

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -146.87 7 6

Pseudoknot

121

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -148.91 8 6

122

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -149.99 7 6

Intercalated tWH

123

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -151.06 8 5

124

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -154.94 7 6

125

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -158.56 9 7

126

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -159.53 8 7

127

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -160.58 9 7

128

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -161.72 7 6

129

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -162.99 7 6

130

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -165.78 8 6

131

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -166.19 7 7

132

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -166.25 8 7

133

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -166.86 8 6

134

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -167.81 7 6

135

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -169.14 8 6

136

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -169.19 8 7

tSH-tHW

137

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -171.42 9 8

138

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -172.28 7 6

139

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -172.49 6 5

140

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -172.92 8 7

141

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -175.82 8 7

142

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -180.10 10 8

143

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -184.43 7 5

144

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -185.11 7 7

145

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -185.70 9 8

146

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -187.35 8 7

147

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -188.30 8 7

UAA/GAN with extra stack

148

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -188.61 7 6

149

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -188.85 9 8

150

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -189.74 8 7

Triple sheared related

151

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -191.88 9 7

Vitamin B12 Aptamer

152

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -192.80 7 6

153

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -193.06 7 7

UAA/GAN related

154

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -195.88 9 9

Reverse turn

155

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -197.29 9 7

156

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -197.69 10 8

157

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -198.17 9 8

158

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -198.28 9 8

159

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -199.08 7 6

160

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -199.44 8 7

6x5 Sarcin-Ricin; G-bulge

161

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -199.82 9 7

162

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -199.90 7 6

163

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -200.44 7 5

164

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -201.81 9 7

Reverse kink-turn

165

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -202.77 10 8

Reverse kink-turn related

166

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -204.00 8 8

167

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -205.85 8 7

UAA/GAN with tHH

168

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -206.46 9 8

169

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -208.33 7 6

170

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -208.54 6 5

171

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -209.60 9 8

172

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -209.78 9 9

Kink-turn related

173

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -210.16 8 7

Other IL

174

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -210.29 8 8

175

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -210.37 8 7

176

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -212.19 6 5

177

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -212.39 9 8

178

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -213.98 9 8

179

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -214.15 9 8

180

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -215.95 8 7

181

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -216.00 8 7

Kink-turn with embedded cWW pair

182

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -217.17 10 8

Other IL

183

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -217.49 11 9

184

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -218.59 10 9

185

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -219.91 8 7

tSH-tHH-tHS

186

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -220.50 9 8

187

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -220.95 8 8

Double sheared; A in syn; two near cWW pairs

188

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -221.10 11 9

189

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -222.01 9 9

190

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -222.10 9 8

Kink-turn

191

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -222.71 11 9

192

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -224.45 10 9

193

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -224.46 9 8

194

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -226.81 10 9

tWH-tWH-tHW-tHW

195

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -229.28 10 9

196

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -230.64 9 8

197

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -230.75 10 10

198

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -230.76 9 9

tHW-tHW cross-strand stack

199

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -232.93 9 9

Sarcin-Ricin target in LSU H95; G-bulge

200

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -234.46 9 8

Kink-turn

201

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -234.71 5 4

202

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -236.71 10 9

203

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -237.45 9 8

204

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -238.10 7 7

Kink-turn from U4

205

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -238.88 10 9

206

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -240.41 8 7

tSH-tWH-tHS-cWW

207

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -241.65 9 7

Part of G-quadruplex

208

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -242.19 11 10

209

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -244.16 9 9

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

210

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -245.44 10 9

211

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -245.75 8 7

212

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -246.06 10 9

213

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -251.30 10 10

8x6 Sarcin-Ricin with inserted A; G-bulge

214

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -251.58 11 10

215

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -253.78 9 8

tSH-tSH-tHH-tHS

216

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -254.61 8 7

217

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -255.35 8 8

tSH-tHW-tWH-tHS

218

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -257.73 10 10

219

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -258.25 8 8

UAA/GAN with extra cWW

220

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -258.27 5 5

221

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -258.34 10 9

222

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -258.51 11 10

223

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -258.74 9 9

7x6 Sarcin-Ricin; G-bulge

224

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -260.01 10 10

225

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -260.45 10 9

226

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -261.64 10 10

227

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -261.84 11 10

228

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -261.85 10 9

229

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -262.69 11 10

230

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -262.92 5 4

231

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -263.37 8 7

232

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -265.66 10 9

tSH-tHS-tHW

233

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -267.75 10 10

7x7 Sarcin-Ricin with intercalated A; G-bulge

234

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -268.77 12 11

235

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -268.96 12 11

236

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -269.21 10 9

Triple sheared with non-canonical cWW

237

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -270.08 11 11

238

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -273.76 5 4

Tandem non-canonical cWW pairs

239

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -273.98 7 6

240

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -274.00 11 11

241

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -275.22 11 10

242

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -276.00 10 9

Kink-turn

243

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -277.92 10 10

8x6 Sarcin-Ricin with bulged A; G-bulge

244

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -278.01 7 6

Triple sheared

245

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -278.14 7 6

Double sheared with non-canonical cWW

246

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -279.46 12 11

247

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -279.71 10 10

8x6 Sarcin-Ricin with inserted Y; G-bulge

248

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -281.41 6 6

UAA/GAN

249

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -284.13 9 9

Kink-turn

250

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -287.55 7 6

251

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -287.76 11 10

252

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -288.68 8 7

Quadruple sheared

253

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -290.40 6 4

254

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -291.91 12 11

255

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -293.17 6 4

Other IL

256

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -295.09 6 5

Triple non-canonical cWW pairs

257

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -295.22 11 10

258

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -295.46 6 4

259

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -295.69 10 9

260

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -295.73 11 11

8x7 Sarcin-Ricin; G-bulge

261

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -299.32 13 12

262

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -303.62 13 11

263

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -303.84 15 13

264

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -305.25 12 12

265

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -305.72 5 5

266

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -306.37 12 11

267

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -306.56 11 10

Kink-turn

268

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -307.64 10 10

269

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -307.72 11 10

270

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -308.96 12 12

271

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -311.04 11 10

Kink-turn

272

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -311.61 11 10

8x7 Sarcin-Ricin; G-bulge

273

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -312.39 9 9

Kink-turn

274

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -312.50 7 6

cWH basepair and non-canonical AC

275

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -312.50 6 4

276

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -313.34 10 10

Kink-turn

277

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -313.88 10 9

Reverse kink-turn related

278

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -313.90 13 12

tSH-tHW-tHH-tHS

279

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -315.71 9 7

280

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -317.88 11 11

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

281

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -319.16 12 11

282

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -319.66 5 3

Multiple bulged bases

283

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -322.19 7 5

284

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -325.76 12 12

285

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -326.03 9 8

Kink-turn

286

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -326.08 7 4

287

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -326.54 15 14

288

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -326.96 17 15

289

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -327.03 6 6

tSH-tWH-tHS

290

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -327.12 7 6

291

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -327.40 11 10

292

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -329.60 8 6

293

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -330.13 6 5

294

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -330.56 16 16

Kink-turn related

295

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -331.20 13 12

296

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -333.27 9 7

297

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -336.35 13 12

298

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -337.89 13 12

299

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -339.94 13 12

300

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -341.63 16 15

Pseudoknot

301

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -343.20 11 11

302

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -344.14 14 13

303

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -345.49 14 14

10x8 Sarcin-Ricin; G-bulge

304

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -345.84 13 12

305

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -346.74 13 12

306

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -347.62 4 4

Tandem non-canonical cWW pairs

307

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -347.63 7 5

308

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -349.11 10 10

Kink-turn

309

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -349.94 13 13

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

310

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -351.13 17 16

311

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -351.17 13 13

312

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -352.30 16 15

313

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -354.25 8 8

Kink-turn related

314

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -355.88 14 12

315

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -358.38 13 13

316

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -360.29 14 12

317

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -360.61 10 7

318

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -361.26 6 6

Triple sheared

319

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -361.73 8 6

320

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -361.77 15 14

321

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -364.76 14 14

322

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -367.08 13 12

323

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -368.96 6 5

324

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -377.74 5 4

325

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -377.78 16 15

326

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -379.41 8 7

cWH basepair with bulged bases

327

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -382.52 18 18

Kink-turn

328

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -386.71 9 7

Kink-turn related

329

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -387.95 16 16

330

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -388.05 6 5

331

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -392.07 14 14

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

332

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -401.22 17 17

333

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -401.36 8 7

334

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -403.28 14 13

Bacterial 5S Loop E

335

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -409.40 10 8

336

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -409.58 7 5

337

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -412.56 14 13

338

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -414.02 11 9

339

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -414.53 6 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

340

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -415.99 14 13

341

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -417.26 10 8

342

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -418.81 14 13

343

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -420.08 14 13

344

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -422.31 5 3

Left turn

345

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -424.13 16 15

Pseudoknot

346

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -427.37 13 11

Pseudoknot

347

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -432.25 5 4

348

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -432.74 18 18

349

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -436.16 14 14

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

350

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -436.72 12 11

Kink-turn related

351

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -437.85 9 7

Minor groove platform

352

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -441.42 19 18

353

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -448.28 16 15

354

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -448.92 16 15

355

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -449.92 9 7

356

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -450.31 12 11

357

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -451.12 11 10

Minor groove platform related

358

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -451.28 19 18

359

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -454.26 19 18

360

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -455.49 9 9

Kink-turn

361

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -457.13 7 5

362

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -462.54 8 5

Major groove intercalation

363

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -463.25 9 7

364

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -468.25 6 5

365

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -470.40 13 12

366

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -471.29 6 4

367

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -473.27 9 7

368

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -475.99 7 5

369

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -482.31 10 8

370

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -493.16 16 16

371

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -497.34 9 7

372

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -517.30 11 9

373

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -517.65 6 4

374

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -525.27 4 2

Minor groove platform, major groove intercalation

375

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -532.95 22 21

376

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -540.52 8 7

377

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -551.52 6 4

378

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -552.45 8 7

379

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -555.51 21 20

380

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -559.27 9 7

381

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -561.17 7 6

382

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -562.73 22 21

383

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -567.86 20 19

Kink-turn related

384

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -581.50 24 23

385

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -593.88 6 6

386

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -602.52 24 24

387

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -607.61 6 4

388

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -610.67 5 3

Minor groove platform

389

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -621.68 6 4

8-nt loop receptor

390

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -630.04 7 6

SSU/LSU pseudoknot

391

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -669.49 7 6

Symmetric double minor groove platform

392

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -774.92 7 5

Major groove intercalation

393

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -797.17 9 8

394

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -840.71 11 8

395

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -865.67 12 11

396

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -868.93 12 11

397

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -870.74 12 11

398

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -876.46 15 14

399

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -882.13 11 9

Part of G-quadruplex

400

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -893.50 10 9

Kink-turn with non-sequential stacking

401

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -1011.02 14 14

402

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -1051.17 21 20

403

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -1107.66 8 6

404

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -1130.64 10 8

Kink-turn

405

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6230.26 9 9

406

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6924.39 7 5

C-loop with bulged stacked A's

407

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8348.22 5 4

C-loop

408

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 21 20

409

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 18 17

410

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 23 22

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 6 4

Coloring options: