JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 45 Internal loop
Column numbers: 1155-1158, 1174-1177 - View nucleotides in PDB file(s)
Scored sequences and counts
U--A*U--A 58
G--G*C--C 29
A--A*U--U 23
-A-G*C--G 17
-A-A*G--G 14
-C-A*G--A 7
A--G*C--U 7
U--G*U--A 7
UA-G*C-GA 6
-A-A*G--A 6
A--G*U--U 6
U--G*C--A 6
U--U*U--U 6
GG-A*U-CC 4
U--C*G--G 4
AU-G*U-AU 3
AU-G*U-GU 3
UG-G*C-CA 3
-A-A*U--G 3
G--A*C--C 3
G--A*U--C 3
G--U*G--C 3
U--A*G--A 3
AC-G*C-GU 2
AU-A*U-AU 2
AU-G*U-UU 2
CC-A*U-GG 2
UA-A*U-UA 2
-A-A*A--G 2
C--A*U--G 2
U--A*U--G 2
U--A*U--U 2
U--G*U--G 2
-GAG*CG-A 1
AA-G*U-UU 1
AC-G*U-GU 1
AG-A*U-CU 1
AG-G*C-CU 1
AG-U*C-CU 1
AU-A*U-GU 1
AU-G*C-AU 1
CG-G*C-CG 1
UA-C*G-UA 1
UA-G*C-UA 1
UA-U*A-UG 1
UC-G*C-GA 1
UG-C*G-CA 1
UG-C*G-UA 1
UG-C*G-UG 1
A-UU*C--U 1
AG-U*C--U 1
C--G*C-AA 1
CU-G*C-U- 1
GG-C*--CC 1
U--U*A-UU 1
-A-A*A--A 1
-A-U*A--G 1
-U-A*G--A 1
A--A*C--U 1
A--G*A--U 1
C--G*U--G 1
C--U*U--C 1
G--U*A--C 1
U--A*A--A 1
U--C*G--A 1
U--G*C--U 1
U--G*U--U 1
U--U*A--A 1
U--U*G--A 1
Omitted sequenced and counts
----*---- 9
U---*A--A 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_42771.1
Basepair signature:
|
81.79 | 15.14 | 2 | 1 |
Multiple bulged bases |
| 2 |
Motif group IL_31737.3
Basepair signature:
|
79.64 | -0.54 | 3 | 1 |
Stack and bulge |
| 3 |
Motif group IL_84476.1
Basepair signature:
|
70.36 | -2.42 | 4 | 2 |
Multiple bulged bases |
| 4 |
Motif group IL_90729.1
Basepair signature:
|
66.79 | -5.06 | 2 | 1 |
Single stack bend |
| 5 |
Motif group IL_26793.1
Basepair signature:
|
66.43 | -4.63 | 2 | 1 |
Single stack bend |
| 6 |
Motif group IL_66635.5
Basepair signature:
|
66.07 | -2.40 | 3 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_07039.3
Basepair signature:
|
64.64 | 3.31 | 2 | 1 |
Major groove platform |
| 8 |
Motif group IL_81831.1
Basepair signature:
|
56.79 | -0.55 | 3 | 1 |
Intercalated cWS |
| 9 |
Motif group IL_00225.13
Basepair signature:
|
54.29 | -23.68 | 1 | 1 |
Single bulged G |
| 10 |
Motif group IL_33761.2
Basepair signature:
|
53.93 | -18.86 | 4 | 1 |
|
| 11 |
Motif group IL_73452.2
Basepair signature:
|
49.64 | -2.38 | 4 | 1 |
|
| 12 |
Motif group IL_61258.15
Basepair signature:
|
49.29 | -25.45 | 2 | 1 |
Single bulged C |
| 13 |
Motif group IL_16386.4
Basepair signature:
|
47.86 | -13.16 | 4 | 1 |
|
| 14 |
Motif group IL_31462.6
Basepair signature:
|
32.50 | -27.86 | 1 | 1 |
Single bulged A |
| 15 |
Motif group IL_48076.6
Basepair signature:
|
19.64 | -151.20 | 2 | 1 |
Major groove platform |
| 16 |
Motif group IL_10569.1
Basepair signature:
|
18.93 | -145.00 | 3 | 1 |
|
| 17 |
Motif group IL_89505.4
Basepair signature:
|
17.50 | -31.79 | 1 | 1 |
Single bulged U |
| 18 |
Motif group IL_44465.1
Basepair signature:
|
16.43 | -51.51 | 3 | 2 |
Isolated non-canonical cWW contact |
| 19 |
Motif group IL_08770.1
Basepair signature:
|
16.07 | -45.89 | 3 | 2 |
|
| 20 |
Motif group IL_14688.1
Basepair signature:
|
16.07 | -54.79 | 4 | 2 |
Isolated non-canonical cWW pair |
| 21 |
Motif group IL_07785.1
Basepair signature:
|
16.07 | -58.35 | 3 | 2 |
Isolated non-canonical cWW pair |
| 22 |
Motif group IL_42997.3
Basepair signature:
|
16.07 | -58.70 | 2 | 2 |
Isolated cWS basepair |
| 23 |
Motif group IL_57744.1
Basepair signature:
|
14.29 | -71.86 | 3 | 2 |
Isolated non-canonical cWW pair |
| 24 |
Motif group IL_87907.2
Basepair signature:
|
13.21 | -60.58 | 2 | 2 |
Isolated non-canonical cWW pair |
| 25 |
Motif group IL_28037.2
Basepair signature:
|
13.21 | -78.98 | 2 | 2 |
Isolated non-canonical cWW pair |
| 26 |
Motif group IL_10167.6
Basepair signature:
|
11.07 | -67.43 | 2 | 2 |
Isolated cWH basepair |
| 27 |
Motif group IL_67095.2
Basepair signature:
|
7.50 | -66.06 | 4 | 2 |
Isolated tWW turn |
| 28 |
Motif group IL_10796.1
Basepair signature:
|
6.43 | -79.77 | 4 | 2 |
|
| 29 |
Motif group IL_85599.2
Basepair signature:
|
6.07 | -78.11 | 4 | 2 |
Isolated tHS basepair with bulges |
| 30 |
Motif group IL_99358.1
Basepair signature:
|
5.00 | -105.78 | 3 | 3 |
|
| 31 |
Motif group IL_63775.1
Basepair signature:
|
4.29 | -112.20 | 4 | 1 |
|
| 32 |
Motif group IL_09990.4
Basepair signature:
|
3.93 | -149.09 | 5 | 3 |
|
| 33 |
Motif group IL_96371.1
Basepair signature:
|
2.50 | -121.63 | 5 | 3 |
|
| 34 |
Motif group IL_83389.2
Basepair signature:
|
2.14 | -125.90 | 5 | 3 |
|
| 35 |
Motif group IL_51454.3
Basepair signature:
|
0.71 | -145.34 | 1 | 1 |
Minor groove platform |
| 36 |
Motif group IL_82107.4
Basepair signature:
|
0.36 | -64.46 | 3 | 2 |
Multiple bulged bases |
| 37 |
Motif group IL_31531.3
Basepair signature:
|
0.36 | -147.21 | 4 | 3 |
Decoding loop related |
| 38 |
Motif group IL_90351.1
Basepair signature:
|
0.36 | -160.25 | 3.5 | 3 |
|
| 39 |
Motif group IL_56987.1
Basepair signature:
|
0.00 | -69.69 | 4 | 2 |
|
| 40 |
Motif group IL_79895.1
Basepair signature:
|
0.00 | -71.50 | 5 | 2 |
|
| 41 |
Motif group IL_76709.2
Basepair signature:
|
0.00 | -78.82 | 4 | 2 |
|
| 42 |
Motif group IL_00881.1
Basepair signature:
|
0.00 | -85.16 | 4 | 2 |
|
| 43 |
Motif group IL_73355.1
Basepair signature:
|
0.00 | -86.58 | 5 | 2 |
|
| 44 |
Motif group IL_22551.4
Basepair signature:
|
0.00 | -88.84 | 4 | 2 |
|
| 45 |
Motif group IL_11415.1
Basepair signature:
|
0.00 | -108.40 | 6 | 4 |
|
| 46 |
Motif group IL_47074.2
Basepair signature:
|
0.00 | -110.32 | 4 | 2 |
|
| 47 |
Motif group IL_07171.1
Basepair signature:
|
0.00 | -123.29 | 5 | 3 |
Bulged stacked bases |
| 48 |
Motif group IL_82706.1
Basepair signature:
|
0.00 | -123.38 | 8 | 6 |
|
| 49 |
Motif group IL_89984.3
Basepair signature:
|
0.00 | -123.93 | 5 | 4 |
|
| 50 |
Motif group IL_76319.5
Basepair signature:
|
0.00 | -126.28 | 6 | 4 |
|
| 51 |
Motif group IL_41344.1
Basepair signature:
|
0.00 | -127.02 | 4 | 3 |
|
| 52 |
Motif group IL_61438.4
Basepair signature:
|
0.00 | -128.36 | 6 | 3 |
|
| 53 |
Motif group IL_28564.1
Basepair signature:
|
0.00 | -130.04 | 5 | 4 |
|
| 54 |
Motif group IL_70335.1
Basepair signature:
|
0.00 | -130.96 | 6 | 5 |
|
| 55 |
Motif group IL_26728.3
Basepair signature:
|
0.00 | -132.35 | 7 | 5 |
|
| 56 |
Motif group IL_26685.1
Basepair signature:
|
0.00 | -133.13 | 5 | 3 |
Multiple bulged bases |
| 57 |
Motif group IL_07173.1
Basepair signature:
|
0.00 | -133.66 | 6 | 5 |
|
| 58 |
Motif group IL_20031.1
Basepair signature:
|
0.00 | -134.95 | 6 | 3 |
|
| 59 |
Motif group IL_70376.1
Basepair signature:
|
0.00 | -135.40 | 6 | 4 |
|
| 60 |
Motif group IL_73789.1
Basepair signature:
|
0.00 | -140.31 | 7 | 5 |
|
| 61 |
Motif group IL_94967.1
Basepair signature:
|
0.00 | -140.81 | 6 | 3 |
|
| 62 |
Motif group IL_99380.1
Basepair signature:
|
0.00 | -141.47 | 5 | 4 |
|
| 63 |
Motif group IL_10389.1
Basepair signature:
|
0.00 | -143.75 | 6 | 4 |
|
| 64 |
Motif group IL_43622.1
Basepair signature:
|
0.00 | -144.53 | 6 | 5 |
|
| 65 |
Motif group IL_42314.1
Basepair signature:
|
0.00 | -144.56 | 5 | 4 |
|
| 66 |
Motif group IL_96759.1
Basepair signature:
|
0.00 | -145.26 | 5 | 4 |
|
| 67 |
Motif group IL_65718.4
Basepair signature:
|
0.00 | -146.41 | 7 | 5 |
|
| 68 |
Motif group IL_91920.1
Basepair signature:
|
0.00 | -146.74 | 6 | 5 |
|
| 69 |
Motif group IL_47972.1
Basepair signature:
|
0.00 | -146.81 | 6 | 4 |
|
| 70 |
Motif group IL_69000.1
Basepair signature:
|
0.00 | -148.03 | 8 | 5 |
|
| 71 |
Motif group IL_51191.1
Basepair signature:
|
0.00 | -148.67 | 8 | 6 |
|
| 72 |
Motif group IL_82741.2
Basepair signature:
|
0.00 | -150.03 | 6 | 3 |
|
| 73 |
Motif group IL_15698.3
Basepair signature:
|
0.00 | -155.80 | 4 | 3 |
|
| 74 |
Motif group IL_69145.3
Basepair signature:
|
0.00 | -155.84 | 7 | 6 |
Pseudoknot |
| 75 |
Motif group IL_14177.2
Basepair signature:
|
0.00 | -156.35 | 6 | 5 |
|
| 76 |
Motif group IL_45444.1
Basepair signature:
|
0.00 | -157.73 | 8 | 6 |
|
| 77 |
Motif group IL_13404.2
Basepair signature:
|
0.00 | -157.86 | 5 | 4 |
Tandem non-canonical cWW pairs |
| 78 |
Motif group IL_61242.1
Basepair signature:
|
0.00 | -158.29 | 7 | 6 |
|
| 79 |
Motif group IL_19102.1
Basepair signature:
|
0.00 | -160.30 | 5 | 4 |
|
| 80 |
Motif group IL_25463.1
Basepair signature:
|
0.00 | -160.43 | 5 | 4 |
|
| 81 |
Motif group IL_06300.1
Basepair signature:
|
0.00 | -160.47 | 6 | 5 |
|
| 82 |
Motif group IL_43644.1
Basepair signature:
|
0.00 | -161.27 | 5 | 4 |
Other IL |
| 83 |
Motif group IL_96788.1
Basepair signature:
|
0.00 | -162.62 | 8 | 6 |
|
| 84 |
Motif group IL_28788.1
Basepair signature:
|
0.00 | -162.83 | 5.5 | 4 |
|
| 85 |
Motif group IL_76758.2
Basepair signature:
|
0.00 | -163.00 | 7 | 6 |
Intercalated tWH |
| 86 |
Motif group IL_98347.1
Basepair signature:
|
0.00 | -163.37 | 7 | 5 |
|
| 87 |
Motif group IL_57881.1
Basepair signature:
|
0.00 | -163.94 | 7 | 4 |
Multiple bulged bases |
| 88 |
Motif group IL_02203.1
Basepair signature:
|
0.00 | -165.17 | 6 | 4 |
|
| 89 |
Motif group IL_67767.4
Basepair signature:
|
0.00 | -165.21 | 6 | 5 |
Receptor of 11-nt loop-receptor motif |
| 90 |
Motif group IL_10484.1
Basepair signature:
|
0.00 | -166.79 | 5 | 4 |
Double sheared |
| 91 |
Motif group IL_29223.1
Basepair signature:
|
0.00 | -167.54 | 8 | 7 |
|
| 92 |
Motif group IL_33141.1
Basepair signature:
|
0.00 | -168.31 | 9 | 7 |
|
| 93 |
Motif group IL_91592.1
Basepair signature:
|
0.00 | -168.67 | 8 | 6 |
|
| 94 |
Motif group IL_61341.1
Basepair signature:
|
0.00 | -168.95 | 5 | 3 |
|
| 95 |
Motif group IL_37603.1
Basepair signature:
|
0.00 | -169.07 | 8 | 7 |
|
| 96 |
Motif group IL_88082.1
Basepair signature:
|
0.00 | -169.69 | 7 | 6 |
|
| 97 |
Motif group IL_34737.1
Basepair signature:
|
0.00 | -169.74 | 7 | 6 |
|
| 98 |
Motif group IL_62012.1
Basepair signature:
|
0.00 | -170.78 | 6 | 5 |
Decoding loop related |
| 99 |
Motif group IL_31558.1
Basepair signature:
|
0.00 | -172.39 | 7 | 5 |
|
| 100 |
Motif group IL_91636.1
Basepair signature:
|
0.00 | -172.65 | 9 | 7 |
|
| 101 |
Motif group IL_29471.1
Basepair signature:
|
0.00 | -172.80 | 7 | 6 |
|
| 102 |
Motif group IL_92446.2
Basepair signature:
|
0.00 | -173.06 | 5 | 4 |
|
| 103 |
Motif group IL_96332.5
Basepair signature:
|
0.00 | -173.42 | 8 | 6 |
|
| 104 |
Motif group IL_82683.2
Basepair signature:
|
0.00 | -174.28 | 7 | 6 |
|
| 105 |
Motif group IL_53448.1
Basepair signature:
|
0.00 | -174.58 | 6 | 5 |
Receptor of 11-nt loop-receptor motif |
| 106 |
Motif group IL_70096.1
Basepair signature:
|
0.00 | -174.72 | 7 | 6 |
Kink-turn related |
| 107 |
Motif group IL_29346.2
Basepair signature:
|
0.00 | -175.16 | 5 | 3 |
Left turn |
| 108 |
Motif group IL_47108.1
Basepair signature:
|
0.00 | -175.69 | 7 | 6 |
|
| 109 |
Motif group IL_90346.1
Basepair signature:
|
0.00 | -175.86 | 7 | 6 |
|
| 110 |
Motif group IL_73759.1
Basepair signature:
|
0.00 | -176.24 | 9 | 7 |
Part of G-quadruplex |
| 111 |
Motif group IL_44874.1
Basepair signature:
|
0.00 | -177.19 | 8 | 7 |
tSH-tHW |
| 112 |
Motif group IL_88017.1
Basepair signature:
|
0.00 | -179.19 | 7 | 5 |
|
| 113 |
Motif group IL_64842.1
Basepair signature:
|
0.00 | -179.25 | 9 | 7 |
|
| 114 |
Motif group IL_55516.2
Basepair signature:
|
0.00 | -179.31 | 5 | 3 |
|
| 115 |
Motif group IL_59302.1
Basepair signature:
|
0.00 | -180.58 | 6 | 5 |
|
| 116 |
Motif group IL_46086.1
Basepair signature:
|
0.00 | -181.79 | 7 | 5 |
|
| 117 |
Motif group IL_51387.2
Basepair signature:
|
0.00 | -183.79 | 4 | 3 |
|
| 118 |
Motif group IL_19668.1
Basepair signature:
|
0.00 | -184.06 | 6 | 5 |
Isolated non-canonical cWW pair |
| 119 |
Motif group IL_21001.1
Basepair signature:
|
0.00 | -184.60 | 7 | 6 |
|
| 120 |
Motif group IL_49612.1
Basepair signature:
|
0.00 | -184.71 | 8 | 6 |
|
| 121 |
Motif group IL_84251.1
Basepair signature:
|
0.00 | -185.13 | 6 | 4 |
|
| 122 |
Motif group IL_61476.2
Basepair signature:
|
0.00 | -185.31 | 5 | 4 |
|
| 123 |
Motif group IL_25186.4
Basepair signature:
|
0.00 | -185.86 | 7 | 7 |
|
| 124 |
Motif group IL_42626.2
Basepair signature:
|
0.00 | -187.26 | 2 | 2 |
|
| 125 |
Motif group IL_56317.1
Basepair signature:
|
0.00 | -187.56 | 8 | 7 |
|
| 126 |
Motif group IL_74367.1
Basepair signature:
|
0.00 | -188.46 | 7 | 6 |
|
| 127 |
Motif group IL_12566.4
Basepair signature:
|
0.00 | -189.20 | 7 | 5 |
|
| 128 |
Motif group IL_95811.1
Basepair signature:
|
0.00 | -190.19 | 9 | 7 |
Vitamin B12 Aptamer |
| 129 |
Motif group IL_85222.1
Basepair signature:
|
0.00 | -190.56 | 9 | 8 |
|
| 130 |
Motif group IL_63519.1
Basepair signature:
|
0.00 | -191.06 | 7 | 6 |
|
| 131 |
Motif group IL_94351.1
Basepair signature:
|
0.00 | -191.47 | 8 | 7 |
|
| 132 |
Motif group IL_04785.1
Basepair signature:
|
0.00 | -191.68 | 6 | 4 |
|
| 133 |
Motif group IL_66997.2
Basepair signature:
|
0.00 | -191.75 | 6 | 4 |
|
| 134 |
Motif group IL_11399.2
Basepair signature:
|
0.00 | -192.29 | 6 | 5 |
|
| 135 |
Motif group IL_09570.1
Basepair signature:
|
0.00 | -193.10 | 10 | 8 |
|
| 136 |
Motif group IL_80412.1
Basepair signature:
|
0.00 | -194.08 | 9 | 8 |
|
| 137 |
Motif group IL_68574.4
Basepair signature:
|
0.00 | -194.22 | 5 | 5 |
|
| 138 |
Motif group IL_16218.2
Basepair signature:
|
0.00 | -195.14 | 8 | 6 |
|
| 139 |
Motif group IL_27393.10
Basepair signature:
|
0.00 | -195.18 | 8 | 6 |
|
| 140 |
Motif group IL_22829.2
Basepair signature:
|
0.00 | -195.68 | 7 | 7 |
|
| 141 |
Motif group IL_46387.1
Basepair signature:
|
0.00 | -196.13 | 5 | 4 |
|
| 142 |
Motif group IL_97631.1
Basepair signature:
|
0.00 | -196.34 | 8 | 7 |
Triple sheared related |
| 143 |
Motif group IL_99498.1
Basepair signature:
|
0.00 | -196.80 | 8 | 7 |
|
| 144 |
Motif group IL_69440.3
Basepair signature:
|
0.00 | -197.67 | 5 | 4 |
|
| 145 |
Motif group IL_75294.1
Basepair signature:
|
0.00 | -198.72 | 7 | 5 |
|
| 146 |
Motif group IL_21200.1
Basepair signature:
|
0.00 | -199.19 | 7 | 6 |
tSH-tHW |
| 147 |
Motif group IL_77658.1
Basepair signature:
|
0.00 | -199.79 | 4 | 4 |
Tandem non-canonical cWW pairs |
| 148 |
Motif group IL_52743.1
Basepair signature:
|
0.00 | -199.88 | 7 | 6 |
|
| 149 |
Motif group IL_85033.2
Basepair signature:
|
0.00 | -201.72 | 4 | 4 |
Tandem non-canonical cWW pairs |
| 150 |
Motif group IL_71598.1
Basepair signature:
|
0.00 | -201.77 | 7 | 5 |
|
| 151 |
Motif group IL_01038.1
Basepair signature:
|
0.00 | -203.34 | 8 | 7 |
UAA/GAN with extra stack |
| 152 |
Motif group IL_86136.1
Basepair signature:
|
0.00 | -203.92 | 9 | 7 |
|
| 153 |
Motif group IL_49061.1
Basepair signature:
|
0.00 | -205.06 | 5 | 4 |
|
| 154 |
Motif group IL_88269.4
Basepair signature:
|
0.00 | -206.37 | 8 | 7 |
6x5 Sarcin-Ricin; G-bulge |
| 155 |
Motif group IL_97273.1
Basepair signature:
|
0.00 | -206.73 | 7 | 5 |
|
| 156 |
Motif group IL_59258.1
Basepair signature:
|
0.00 | -207.75 | 9 | 8 |
|
| 157 |
Motif group IL_33623.1
Basepair signature:
|
0.00 | -208.02 | 9 | 8 |
|
| 158 |
Motif group IL_05192.4
Basepair signature:
|
0.00 | -208.23 | 7 | 6 |
|
| 159 |
Motif group IL_38969.1
Basepair signature:
|
0.00 | -208.81 | 9 | 8 |
Reverse kink-turn related |
| 160 |
Motif group IL_21667.1
Basepair signature:
|
0.00 | -209.00 | 8 | 7 |
|
| 161 |
Motif group IL_11344.2
Basepair signature:
|
0.00 | -209.80 | 7 | 6 |
180 degree turn |
| 162 |
Motif group IL_01176.1
Basepair signature:
|
0.00 | -210.67 | 8 | 7 |
|
| 163 |
Motif group IL_00981.1
Basepair signature:
|
0.00 | -210.96 | 8 | 7 |
UAA/GAN with tHH |
| 164 |
Motif group IL_67780.1
Basepair signature:
|
0.00 | -211.44 | 7 | 6 |
|
| 165 |
Motif group IL_95583.2
Basepair signature:
|
0.00 | -211.78 | 3 | 2 |
Minor groove platform, major groove intercalation |
| 166 |
Motif group IL_09908.1
Basepair signature:
|
0.00 | -212.69 | 9 | 7 |
Reverse kink-turn |
| 167 |
Motif group IL_51479.1
Basepair signature:
|
0.00 | -212.71 | 5 | 4 |
|
| 168 |
Motif group IL_21173.1
Basepair signature:
|
0.00 | -213.11 | 9 | 7 |
|
| 169 |
Motif group IL_69986.1
Basepair signature:
|
0.00 | -213.21 | 8 | 8 |
|
| 170 |
Motif group IL_30730.1
Basepair signature:
|
0.00 | -213.52 | 9 | 8 |
|
| 171 |
Motif group IL_89099.1
Basepair signature:
|
0.00 | -213.69 | 10 | 8 |
Other IL |
| 172 |
Motif group IL_85652.1
Basepair signature:
|
0.00 | -214.55 | 9 | 8 |
|
| 173 |
Motif group IL_70627.3
Basepair signature:
|
0.00 | -215.39 | 8 | 7 |
UAA/GAN related |
| 174 |
Motif group IL_12697.1
Basepair signature:
|
0.00 | -215.78 | 8 | 7 |
|
| 175 |
Motif group IL_66798.2
Basepair signature:
|
0.00 | -216.18 | 6 | 6 |
AAA cross-strand stack |
| 176 |
Motif group IL_24499.1
Basepair signature:
|
0.00 | -216.27 | 10 | 8 |
|
| 177 |
Motif group IL_26598.1
Basepair signature:
|
0.00 | -216.44 | 8 | 6 |
|
| 178 |
Motif group IL_97697.1
Basepair signature:
|
0.00 | -216.86 | 10 | 9 |
Reverse turn |
| 179 |
Motif group IL_80231.1
Basepair signature:
|
0.00 | -217.07 | 9 | 7 |
Other IL |
| 180 |
Motif group IL_38634.5
Basepair signature:
|
0.00 | -217.76 | 6 | 6 |
cWH basepair and non-canonical AC |
| 181 |
Motif group IL_78800.1
Basepair signature:
|
0.00 | -217.85 | 5 | 4 |
|
| 182 |
Motif group IL_42778.1
Basepair signature:
|
0.00 | -217.91 | 9 | 8 |
|
| 183 |
Motif group IL_70411.2
Basepair signature:
|
0.00 | -218.01 | 7 | 7 |
|
| 184 |
Motif group IL_25412.1
Basepair signature:
|
0.00 | -218.57 | 7 | 5 |
Major groove intercalation |
| 185 |
Motif group IL_09705.15
Basepair signature:
|
0.00 | -218.64 | 4 | 4 |
Double sheared |
| 186 |
Motif group IL_14368.1
Basepair signature:
|
0.00 | -218.99 | 4 | 2 |
Major groove platform with intercalated tWH |
| 187 |
Motif group IL_55953.3
Basepair signature:
|
0.00 | -219.50 | 9 | 8 |
|
| 188 |
Motif group IL_25872.4
Basepair signature:
|
0.00 | -220.90 | 5 | 4 |
|
| 189 |
Motif group IL_80926.1
Basepair signature:
|
0.00 | -221.12 | 10 | 8 |
|
| 190 |
Motif group IL_92634.2
Basepair signature:
|
0.00 | -221.87 | 6 | 4 |
|
| 191 |
Motif group IL_74184.1
Basepair signature:
|
0.00 | -223.52 | 10 | 8 |
|
| 192 |
Motif group IL_09044.1
Basepair signature:
|
0.00 | -224.44 | 9 | 8 |
|
| 193 |
Motif group IL_68405.1
Basepair signature:
|
0.00 | -225.39 | 10 | 9 |
Kink-turn related |
| 194 |
Motif group IL_38186.6
Basepair signature:
|
0.00 | -225.91 | 6 | 5 |
|
| 195 |
Motif group IL_44438.1
Basepair signature:
|
0.00 | -227.45 | 8 | 8 |
|
| 196 |
Motif group IL_99646.2
Basepair signature:
|
0.00 | -227.59 | 6 | 5 |
tSH-tHW |
| 197 |
Motif group IL_82968.1
Basepair signature:
|
0.00 | -228.22 | 9 | 7 |
|
| 198 |
Motif group IL_38507.2
Basepair signature:
|
0.00 | -228.60 | 6 | 5 |
UAA/GAN |
| 199 |
Motif group IL_33323.1
Basepair signature:
|
0.00 | -228.93 | 6 | 5 |
|
| 200 |
Motif group IL_85498.1
Basepair signature:
|
0.00 | -228.99 | 10 | 9 |
|
| 201 |
Motif group IL_74051.1
Basepair signature:
|
0.00 | -229.09 | 9 | 8 |
Kink-turn |
| 202 |
Motif group IL_87211.1
Basepair signature:
|
0.00 | -229.45 | 5 | 4 |
|
| 203 |
Motif group IL_62654.1
Basepair signature:
|
0.00 | -229.61 | 8 | 7 |
tSH-tHH-tHS |
| 204 |
Motif group IL_48444.6
Basepair signature:
|
0.00 | -233.02 | 5 | 5 |
|
| 205 |
Motif group IL_54896.1
Basepair signature:
|
0.00 | -233.37 | 11 | 9 |
|
| 206 |
Motif group IL_51265.3
Basepair signature:
|
0.00 | -233.78 | 7 | 7 |
Kink-turn from U4 |
| 207 |
Motif group IL_78472.1
Basepair signature:
|
0.00 | -233.92 | 11 | 9 |
|
| 208 |
Motif group IL_71294.3
Basepair signature:
|
0.00 | -236.73 | 9 | 8 |
Double sheared; A in syn; two near cWW pairs |
| 209 |
Motif group IL_61440.1
Basepair signature:
|
0.00 | -236.75 | 7 | 6 |
Triple sheared |
| 210 |
Motif group IL_23038.1
Basepair signature:
|
0.00 | -237.15 | 10 | 9 |
|
| 211 |
Motif group IL_12745.1
Basepair signature:
|
0.00 | -237.33 | 10 | 9 |
tWH-tWH-tHW-tHW |
| 212 |
Motif group IL_77870.1
Basepair signature:
|
0.00 | -237.37 | 9 | 9 |
|
| 213 |
Motif group IL_55917.1
Basepair signature:
|
0.00 | -237.72 | 8 | 7 |
|
| 214 |
Motif group IL_82292.1
Basepair signature:
|
0.00 | -238.03 | 8 | 8 |
|
| 215 |
Motif group IL_33886.1
Basepair signature:
|
0.00 | -238.19 | 9 | 8 |
Kink-turn with embedded cWW pair |
| 216 |
Motif group IL_31561.1
Basepair signature:
|
0.00 | -238.66 | 10 | 9 |
|
| 217 |
Motif group IL_88974.1
Basepair signature:
|
0.00 | -239.04 | 10 | 9 |
|
| 218 |
Motif group IL_76308.6
Basepair signature:
|
0.00 | -239.05 | 8 | 8 |
tSH-tWH-tHS-cWW |
| 219 |
Motif group IL_68909.1
Basepair signature:
|
0.00 | -242.03 | 6 | 5 |
|
| 220 |
Motif group IL_70801.1
Basepair signature:
|
0.00 | -243.03 | 9.5 | 9 |
|
| 221 |
Motif group IL_31084.1
Basepair signature:
|
0.00 | -243.58 | 9 | 8 |
|
| 222 |
Motif group IL_69229.3
Basepair signature:
|
0.00 | -244.55 | 9 | 9 |
Kink-turn |
| 223 |
Motif group IL_54041.2
Basepair signature:
|
0.00 | -246.64 | 10 | 9 |
tHW-tHW cross-strand stack |
| 224 |
Motif group IL_34822.1
Basepair signature:
|
0.00 | -247.97 | 10 | 8 |
|
| 225 |
Motif group IL_19897.3
Basepair signature:
|
0.00 | -249.63 | 8 | 7 |
|
| 226 |
Motif group IL_20047.1
Basepair signature:
|
0.00 | -251.19 | 10 | 10 |
|
| 227 |
Motif group IL_16458.4
Basepair signature:
|
0.00 | -251.58 | 9 | 9 |
Sarcin-Ricin target in LSU H95; G-bulge |
| 228 |
Motif group IL_87284.1
Basepair signature:
|
0.00 | -252.27 | 8 | 8 |
tSH-tHW-tWH-tHS |
| 229 |
Motif group IL_33711.1
Basepair signature:
|
0.00 | -252.84 | 8 | 7 |
Minor groove platform |
| 230 |
Motif group IL_36516.3
Basepair signature:
|
0.00 | -253.76 | 5 | 4 |
|
| 231 |
Motif group IL_24254.1
Basepair signature:
|
0.00 | -254.62 | 10 | 9 |
7x6 Sarcin-Ricin with UU cWW pair; G-bulge |
| 232 |
Motif group IL_53596.1
Basepair signature:
|
0.00 | -254.97 | 8 | 7 |
|
| 233 |
Motif group IL_47087.1
Basepair signature:
|
0.00 | -256.07 | 9 | 7 |
Kink-turn related |
| 234 |
Motif group IL_77278.1
Basepair signature:
|
0.00 | -256.50 | 10 | 10 |
|
| 235 |
Motif group IL_88072.1
Basepair signature:
|
0.00 | -257.95 | 10 | 9 |
|
| 236 |
Motif group IL_89021.2
Basepair signature:
|
0.00 | -258.60 | 6 | 6 |
UAA/GAN |
| 237 |
Motif group IL_74957.1
Basepair signature:
|
0.00 | -258.79 | 8 | 7 |
cWH basepair with bulged bases |
| 238 |
Motif group IL_02555.1
Basepair signature:
|
0.00 | -259.00 | 3 | 2 |
Major groove platform with intercalation |
| 239 |
Motif group IL_58112.2
Basepair signature:
|
0.00 | -259.99 | 6 | 5 |
|
| 240 |
Motif group IL_41853.1
Basepair signature:
|
0.00 | -261.84 | 10 | 9 |
|
| 241 |
Motif group IL_47346.2
Basepair signature:
|
0.00 | -264.18 | 9 | 9 |
tSH-tSH-tHH-tHS |
| 242 |
Motif group IL_64231.5
Basepair signature:
|
0.00 | -264.28 | 5 | 5 |
|
| 243 |
Motif group IL_46112.1
Basepair signature:
|
0.00 | -265.06 | 10 | 7 |
|
| 244 |
Motif group IL_04736.1
Basepair signature:
|
0.00 | -265.77 | 10 | 10 |
|
| 245 |
Motif group IL_03350.1
Basepair signature:
|
0.00 | -265.92 | 10 | 9 |
Reverse kink-turn related |
| 246 |
Motif group IL_26307.2
Basepair signature:
|
0.00 | -266.21 | 9 | 9 |
7x6 Sarcin-Ricin; G-bulge |
| 247 |
Motif group IL_04650.2
Basepair signature:
|
0.00 | -267.33 | 10 | 8 |
|
| 248 |
Motif group IL_18487.1
Basepair signature:
|
0.00 | -267.80 | 10 | 9 |
|
| 249 |
Motif group IL_89312.1
Basepair signature:
|
0.00 | -269.37 | 10 | 9 |
|
| 250 |
Motif group IL_13358.1
Basepair signature:
|
0.00 | -269.38 | 11 | 10 |
|
| 251 |
Motif group IL_16665.1
Basepair signature:
|
0.00 | -269.48 | 11 | 10 |
|
| 252 |
Motif group IL_78349.3
Basepair signature:
|
0.00 | -269.80 | 11 | 10 |
|
| 253 |
Motif group IL_85536.2
Basepair signature:
|
0.00 | -269.90 | 8 | 8 |
|
| 254 |
Motif group IL_80209.1
Basepair signature:
|
0.00 | -272.77 | 11 | 10 |
|
| 255 |
Motif group IL_17948.2
Basepair signature:
|
0.00 | -273.49 | 7 | 6 |
Double sheared with non-canonical cWW |
| 256 |
Motif group IL_18354.1
Basepair signature:
|
0.00 | -273.56 | 10 | 8 |
|
| 257 |
Motif group IL_61286.1
Basepair signature:
|
0.00 | -273.87 | 11 | 10 |
8x6 Sarcin-Ricin with inserted A; G-bulge |
| 258 |
Motif group IL_77691.5
Basepair signature:
|
0.00 | -274.05 | 6 | 5 |
UAA/GAN related |
| 259 |
Motif group IL_64048.1
Basepair signature:
|
0.00 | -274.50 | 10 | 8 |
|
| 260 |
Motif group IL_04600.1
Basepair signature:
|
0.00 | -275.67 | 11 | 10 |
|
| 261 |
Motif group IL_80398.1
Basepair signature:
|
0.00 | -276.25 | 6 | 4 |
Minor groove platform |
| 262 |
Motif group IL_49767.8
Basepair signature:
|
0.00 | -276.98 | 8 | 8 |
UAA/GAN with extra cWW |
| 263 |
Motif group IL_04638.3
Basepair signature:
|
0.00 | -277.29 | 10 | 10 |
tSH-tHS-tHW |
| 264 |
Motif group IL_69271.3
Basepair signature:
|
0.00 | -277.57 | 11 | 10 |
|
| 265 |
Motif group IL_32016.1
Basepair signature:
|
0.00 | -278.11 | 10 | 9 |
Kink-turn |
| 266 |
Motif group IL_88116.2
Basepair signature:
|
0.00 | -278.53 | 10 | 10 |
|
| 267 |
Motif group IL_17136.7
Basepair signature:
|
0.00 | -278.86 | 6 | 6 |
tSH-tWH-tHS |
| 268 |
Motif group IL_09129.2
Basepair signature:
|
0.00 | -279.01 | 10 | 10 |
|
| 269 |
Motif group IL_68243.1
Basepair signature:
|
0.00 | -279.87 | 11 | 10 |
|
| 270 |
Motif group IL_13874.1
Basepair signature:
|
0.00 | -279.98 | 11 | 10 |
|
| 271 |
Motif group IL_00555.1
Basepair signature:
|
0.00 | -281.89 | 9 | 7 |
|
| 272 |
Motif group IL_23774.1
Basepair signature:
|
0.00 | -283.36 | 6 | 5 |
UAA/GAN variation |
| 273 |
Motif group IL_29198.2
Basepair signature:
|
0.00 | -283.37 | 10 | 10 |
7x7 Sarcin-Ricin with intercalated A; G-bulge |
| 274 |
Motif group IL_04021.2
Basepair signature:
|
0.00 | -284.87 | 10 | 10 |
Triple sheared with non-canonical cWW |
| 275 |
Motif group IL_94684.1
Basepair signature:
|
0.00 | -285.63 | 6 | 5 |
|
| 276 |
Motif group IL_06136.2
Basepair signature:
|
0.00 | -287.99 | 9 | 8 |
Quadruple sheared |
| 277 |
Motif group IL_49867.1
Basepair signature:
|
0.00 | -288.13 | 12 | 11 |
|
| 278 |
Motif group IL_38862.4
Basepair signature:
|
0.00 | -288.47 | 6 | 6 |
5x5 Sarcin-Ricin with intercalated A; G-bulge |
| 279 |
Motif group IL_15218.1
Basepair signature:
|
0.00 | -289.11 | 11 | 9 |
|
| 280 |
Motif group IL_18472.4
Basepair signature:
|
0.00 | -289.22 | 9 | 7 |
|
| 281 |
Motif group IL_41756.4
Basepair signature:
|
0.00 | -290.21 | 11 | 10 |
8x6 Sarcin-Ricin with inserted Y; G-bulge |
| 282 |
Motif group IL_85630.1
Basepair signature:
|
0.00 | -290.31 | 11 | 11 |
|
| 283 |
Motif group IL_70923.9
Basepair signature:
|
0.00 | -290.43 | 9 | 9 |
Kink-turn |
| 284 |
Motif group IL_02349.4
Basepair signature:
|
0.00 | -290.81 | 11 | 10 |
8x6 Sarcin-Ricin with bulged A; G-bulge |
| 285 |
Motif group IL_54177.4
Basepair signature:
|
0.00 | -291.06 | 12 | 12 |
|
| 286 |
Motif group IL_58960.1
Basepair signature:
|
0.00 | -292.49 | 8 | 7 |
|
| 287 |
Motif group IL_65851.3
Basepair signature:
|
0.00 | -293.74 | 11 | 10 |
|
| 288 |
Motif group IL_49751.4
Basepair signature:
|
0.00 | -294.86 | 6 | 6 |
Triple non-canonical cWW pairs |
| 289 |
Motif group IL_07469.2
Basepair signature:
|
0.00 | -295.35 | 7 | 6 |
|
| 290 |
Motif group IL_44325.1
Basepair signature:
|
0.00 | -296.07 | 5 | 4 |
|
| 291 |
Motif group IL_37752.1
Basepair signature:
|
0.00 | -298.51 | 12 | 11 |
|
| 292 |
Motif group IL_25573.1
Basepair signature:
|
0.00 | -299.18 | 7 | 5 |
|
| 293 |
Motif group IL_94910.1
Basepair signature:
|
0.00 | -299.73 | 9 | 9 |
Kink-turn |
| 294 |
Motif group IL_31915.1
Basepair signature:
|
0.00 | -302.71 | 12 | 11 |
|
| 295 |
Motif group IL_22854.4
Basepair signature:
|
0.00 | -305.31 | 10 | 10 |
|
| 296 |
Motif group IL_65594.1
Basepair signature:
|
0.00 | -305.32 | 11 | 11 |
8x7 Sarcin-Ricin; G-bulge |
| 297 |
Motif group IL_06691.1
Basepair signature:
|
0.00 | -306.01 | 8 | 7 |
|
| 298 |
Motif group IL_57188.5
Basepair signature:
|
0.00 | -307.09 | 8 | 8 |
Kink-turn related |
| 299 |
Motif group IL_99692.2
Basepair signature:
|
0.00 | -308.08 | 10 | 10 |
Kink-turn |
| 300 |
Motif group IL_43858.1
Basepair signature:
|
0.00 | -308.09 | 13 | 13 |
|
| 301 |
Motif group IL_58126.1
Basepair signature:
|
0.00 | -309.65 | 11 | 11 |
|
| 302 |
Motif group IL_50730.2
Basepair signature:
|
0.00 | -311.09 | 6 | 6 |
Triple sheared |
| 303 |
Motif group IL_01488.3
Basepair signature:
|
0.00 | -312.58 | 9 | 9 |
Kink-turn |
| 304 |
Motif group IL_84665.1
Basepair signature:
|
0.00 | -313.17 | 13 | 11 |
|
| 305 |
Motif group IL_58350.1
Basepair signature:
|
0.00 | -313.47 | 12 | 11 |
|
| 306 |
Motif group IL_22373.1
Basepair signature:
|
0.00 | -314.08 | 6 | 4 |
8-nt loop receptor |
| 307 |
Motif group IL_69543.3
Basepair signature:
|
0.00 | -314.10 | 10 | 10 |
|
| 308 |
Motif group IL_04332.3
Basepair signature:
|
0.00 | -314.25 | 12 | 12 |
|
| 309 |
Motif group IL_15052.4
Basepair signature:
|
0.00 | -315.58 | 3 | 2 |
Minor groove platform |
| 310 |
Motif group IL_53787.1
Basepair signature:
|
0.00 | -317.63 | 12 | 11 |
Pseudoknot |
| 311 |
Motif group IL_95727.1
Basepair signature:
|
0.00 | -318.30 | 11 | 11 |
Kink-turn |
| 312 |
Motif group IL_80604.6
Basepair signature:
|
0.00 | -319.66 | 11 | 11 |
|
| 313 |
Motif group IL_04346.10
Basepair signature:
|
0.00 | -320.99 | 11 | 11 |
8x7 Sarcin-Ricin; G-bulge |
| 314 |
Motif group IL_95570.1
Basepair signature:
|
0.00 | -322.23 | 5 | 4 |
|
| 315 |
Motif group IL_32056.1
Basepair signature:
|
0.00 | -323.17 | 11 | 9 |
|
| 316 |
Motif group IL_77045.1
Basepair signature:
|
0.00 | -324.25 | 10 | 9 |
Kink-turn |
| 317 |
Motif group IL_64900.1
Basepair signature:
|
0.00 | -324.86 | 11 | 11 |
Kink-turn |
| 318 |
Motif group IL_59724.1
Basepair signature:
|
0.00 | -325.96 | 11 | 11 |
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge |
| 319 |
Motif group IL_68140.4
Basepair signature:
|
0.00 | -326.55 | 3 | 2 |
Major groove minor groove platform; mini C-loop |
| 320 |
Motif group IL_73002.1
Basepair signature:
|
0.00 | -326.77 | 15 | 14 |
|
| 321 |
Motif group IL_96236.1
Basepair signature:
|
0.00 | -327.05 | 7 | 6 |
|
| 322 |
Motif group IL_81522.2
Basepair signature:
|
0.00 | -327.08 | 5 | 3 |
Major groove minor groove platform with intercalation; mini C-loop |
| 323 |
Motif group IL_61299.4
Basepair signature:
|
0.00 | -327.30 | 6 | 5 |
|
| 324 |
Motif group IL_19048.1
Basepair signature:
|
0.00 | -327.58 | 11 | 11 |
|
| 325 |
Motif group IL_64403.1
Basepair signature:
|
0.00 | -328.85 | 13 | 12 |
|
| 326 |
Motif group IL_60657.1
Basepair signature:
|
0.00 | -329.97 | 13 | 12 |
|
| 327 |
Motif group IL_01994.1
Basepair signature:
|
0.00 | -330.86 | 6 | 4 |
|
| 328 |
Motif group IL_37015.1
Basepair signature:
|
0.00 | -334.50 | 11 | 10 |
Kink-turn |
| 329 |
Motif group IL_82426.6
Basepair signature:
|
0.00 | -335.59 | 13 | 12 |
|
| 330 |
Motif group IL_74746.1
Basepair signature:
|
0.00 | -336.26 | 13 | 12 |
|
| 331 |
Motif group IL_84694.2
Basepair signature:
|
0.00 | -337.20 | 13 | 13 |
tSH-tHW-tHH-tHS |
| 332 |
Motif group IL_28026.3
Basepair signature:
|
0.00 | -337.42 | 12 | 11 |
|
| 333 |
Motif group IL_43140.1
Basepair signature:
|
0.00 | -337.71 | 11 | 8 |
|
| 334 |
Motif group IL_49971.1
Basepair signature:
|
0.00 | -339.57 | 10 | 8 |
|
| 335 |
Motif group IL_41203.4
Basepair signature:
|
0.00 | -340.40 | 7 | 6 |
SSU/LSU pseudoknot |
| 336 |
Motif group IL_15107.1
Basepair signature:
|
0.00 | -341.82 | 15 | 15 |
|
| 337 |
Motif group IL_04307.1
Basepair signature:
|
0.00 | -347.83 | 12 | 12 |
|
| 338 |
Motif group IL_42218.2
Basepair signature:
|
0.00 | -350.02 | 13 | 12 |
|
| 339 |
Motif group IL_81392.1
Basepair signature:
|
0.00 | -350.30 | 17 | 16 |
|
| 340 |
Motif group IL_87290.1
Basepair signature:
|
0.00 | -351.35 | 17 | 16 |
Kink-turn related |
| 341 |
Motif group IL_50694.7
Basepair signature:
|
0.00 | -352.16 | 3 | 2 |
Major groove platform; stack outside cWW |
| 342 |
Motif group IL_42231.1
Basepair signature:
|
0.00 | -355.92 | 13 | 13 |
|
| 343 |
Motif group IL_89047.1
Basepair signature:
|
0.00 | -356.24 | 13 | 13 |
|
| 344 |
Motif group IL_54050.1
Basepair signature:
|
0.00 | -358.78 | 12 | 11 |
|
| 345 |
Motif group IL_47078.3
Basepair signature:
|
0.00 | -360.24 | 6 | 3 |
Minor groove platform |
| 346 |
Motif group IL_65653.1
Basepair signature:
|
0.00 | -360.84 | 15 | 14 |
|
| 347 |
Motif group IL_43467.1
Basepair signature:
|
0.00 | -362.83 | 16 | 15 |
Pseudoknot |
| 348 |
Motif group IL_43547.1
Basepair signature:
|
0.00 | -364.78 | 14 | 14 |
10x8 Sarcin-Ricin; G-bulge |
| 349 |
Motif group IL_05472.1
Basepair signature:
|
0.00 | -366.72 | 13 | 12 |
|
| 350 |
Motif group IL_57741.1
Basepair signature:
|
0.00 | -367.29 | 13 | 13 |
|
| 351 |
Motif group IL_17973.1
Basepair signature:
|
0.00 | -367.47 | 17 | 16 |
|
| 352 |
Motif group IL_81731.1
Basepair signature:
|
0.00 | -368.06 | 14 | 13 |
|
| 353 |
Motif group IL_59049.1
Basepair signature:
|
0.00 | -368.87 | 14 | 13 |
|
| 354 |
Motif group IL_34470.3
Basepair signature:
|
0.00 | -369.26 | 13 | 13 |
9x8 Sarcin-Ricin with GA cWW pair; G-bulge |
| 355 |
Motif group IL_29357.1
Basepair signature:
|
0.00 | -372.15 | 15 | 15 |
|
| 356 |
Motif group IL_28304.1
Basepair signature:
|
0.00 | -373.48 | 14 | 14 |
|
| 357 |
Motif group IL_79846.1
Basepair signature:
|
0.00 | -374.58 | 16 | 15 |
|
| 358 |
Motif group IL_04073.1
Basepair signature:
|
0.00 | -377.46 | 16 | 16 |
|
| 359 |
Motif group IL_19852.1
Basepair signature:
|
0.00 | -378.43 | 11 | 9 |
Part of G-quadruplex |
| 360 |
Motif group IL_73700.1
Basepair signature:
|
0.00 | -381.60 | 12 | 12 |
|
| 361 |
Motif group IL_36729.1
Basepair signature:
|
0.00 | -382.77 | 14 | 13 |
|
| 362 |
Motif group IL_91698.1
Basepair signature:
|
0.00 | -383.35 | 14 | 13 |
|
| 363 |
Motif group IL_21630.1
Basepair signature:
|
0.00 | -384.84 | 14 | 13 |
|
| 364 |
Motif group IL_17069.5
Basepair signature:
|
0.00 | -391.81 | 12 | 12 |
Kink-turn related |
| 365 |
Motif group IL_49714.1
Basepair signature:
|
0.00 | -393.81 | 7 | 5 |
Major groove intercalation |
| 366 |
Motif group IL_61249.1
Basepair signature:
|
0.00 | -396.63 | 16 | 16 |
|
| 367 |
Motif group IL_60448.1
Basepair signature:
|
0.00 | -401.85 | 17 | 16 |
|
| 368 |
Motif group IL_67623.1
Basepair signature:
|
0.00 | -406.34 | 11 | 10 |
Minor groove platform related |
| 369 |
Motif group IL_06029.1
Basepair signature:
|
0.00 | -407.52 | 19 | 18 |
Kink-turn |
| 370 |
Motif group IL_56455.6
Basepair signature:
|
0.00 | -408.07 | 14 | 14 |
Bacterial 5S Loop E |
| 371 |
Motif group IL_38394.1
Basepair signature:
|
0.00 | -409.19 | 8 | 6 |
|
| 372 |
Motif group IL_31504.1
Basepair signature:
|
0.00 | -418.09 | 16 | 16 |
|
| 373 |
Motif group IL_70670.1
Basepair signature:
|
0.00 | -419.40 | 15 | 14 |
9x9 Sarcin-Ricin with pseudoknotted region; G-bulge |
| 374 |
Motif group IL_93889.1
Basepair signature:
|
0.00 | -423.97 | 17 | 17 |
|
| 375 |
Motif group IL_42032.1
Basepair signature:
|
0.00 | -425.17 | 9 | 7 |
|
| 376 |
Motif group IL_46174.3
Basepair signature:
|
0.00 | -427.06 | 10 | 10 |
Kink-turn with non-sequential stacking |
| 377 |
Motif group IL_66663.1
Basepair signature:
|
0.00 | -429.81 | 14 | 14 |
|
| 378 |
Motif group IL_85879.1
Basepair signature:
|
0.00 | -431.14 | 14 | 14 |
|
| 379 |
Motif group IL_96303.1
Basepair signature:
|
0.00 | -433.18 | 14 | 13 |
|
| 380 |
Motif group IL_30441.1
Basepair signature:
|
0.00 | -436.63 | 14 | 13 |
|
| 381 |
Motif group IL_20463.1
Basepair signature:
|
0.00 | -446.05 | 14 | 14 |
7x11 Sarcin-Ricin with pseudoknotted region; G-bulge |
| 382 |
Motif group IL_17765.1
Basepair signature:
|
0.00 | -446.19 | 12 | 11 |
|
| 383 |
Motif group IL_44624.1
Basepair signature:
|
0.00 | -450.80 | 12 | 11 |
|
| 384 |
Motif group IL_86012.1
Basepair signature:
|
0.00 | -450.93 | 12 | 12 |
|
| 385 |
Motif group IL_19516.1
Basepair signature:
|
0.00 | -451.10 | 16 | 15 |
Pseudoknot |
| 386 |
Motif group IL_76460.1
Basepair signature:
|
0.00 | -451.82 | 19 | 18 |
|
| 387 |
Motif group IL_15991.1
Basepair signature:
|
0.00 | -459.53 | 19 | 19 |
|
| 388 |
Motif group IL_13394.1
Basepair signature:
|
0.00 | -466.16 | 19 | 19 |
|
| 389 |
Motif group IL_50715.3
Basepair signature:
|
0.00 | -476.02 | 19 | 19 |
|
| 390 |
Motif group IL_24134.1
Basepair signature:
|
0.00 | -483.98 | 10 | 8 |
Kink-turn |
| 391 |
Motif group IL_06549.2
Basepair signature:
|
0.00 | -492.43 | 5 | 4 |
|
| 392 |
Motif group IL_75283.2
Basepair signature:
|
0.00 | -492.87 | 15 | 14 |
|
| 393 |
Motif group IL_60797.1
Basepair signature:
|
0.00 | -515.67 | 16 | 16 |
|
| 394 |
Motif group IL_53581.1
Basepair signature:
|
0.00 | -515.80 | 20 | 19 |
Kink-turn related |
| 395 |
Motif group IL_80298.1
Basepair signature:
|
0.00 | -555.34 | 22 | 22 |
|
| 396 |
Motif group IL_64858.3
Basepair signature:
|
0.00 | -565.00 | 21.5 | 21 |
|
| 397 |
Motif group IL_58103.11
Basepair signature:
|
0.00 | -579.18 | 7 | 6 |
Symmetric double minor groove platform |
| 398 |
Motif group IL_81516.2
Basepair signature:
|
0.00 | -579.71 | 15 | 14 |
|
| 399 |
Motif group IL_34739.3
Basepair signature:
|
0.00 | -584.41 | 23 | 22 |
|
| 400 |
Motif group IL_29826.1
Basepair signature:
|
0.00 | -608.24 | 24 | 24 |
|
| 401 |
Motif group IL_83149.1
Basepair signature:
|
0.00 | -629.27 | 25 | 24 |
|
| 402 |
Motif group IL_84409.1
Basepair signature:
|
0.00 | -640.20 | 21 | 21 |
|
| 403 |
Motif group IL_22564.1
Basepair signature:
|
0.00 | -6244.87 | 9.5 | 9 |
|
| 404 |
Motif group IL_26222.2
Basepair signature:
|
0.00 | -6994.97 | 7 | 5 |
C-loop with bulged stacked A's |
| 405 |
Motif group IL_63596.11
Basepair signature:
|
0.00 | -8867.47 | 5 | 4 |
C-loop |
| 406 |
Motif group IL_59877.1
Basepair signature:
|
0.00 | -8933.58 | 3.5 | 2 |
|
| 407 |
Motif group IL_03109.3
Basepair signature:
|
0.00 | -9999.00 | 5 | 3 |
C-loop |
| 408 |
Motif group IL_20245.1
Basepair signature:
|
0.00 | -9999.00 | 22 | 21 |
|
| 409 |
Motif group IL_45896.1
Basepair signature:
|
0.00 | -9999.00 | 18 | 18 |
|
| 410 |
Motif group IL_54737.1
Basepair signature:
|
0.00 | -9999.00 | 23 | 23 |
|
| 411 |
Motif group IL_83150.2
Basepair signature:
|
0.00 | -9999.00 | 6 | 4 |
|