RNA 3D Hub

JAR3D Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 8 Internal loop

Column numbers: 87-88, 308-346 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    UA*UUGAGGGUGU----------------------------A   22

    
    CG*A-------------------------------------G   13

    
    CU*G-------------------------------------G    6

    
    UU*G-------------------------------------A    5

    
    CG*AUCACCCCUGUGUCAA----------------------G    4

    
    UA*UUGAGGGCGU----------------------------A    4

    
    GG*A-------------------------------------C    4

    
    CC*-------------------------------------GG    3

    
    UC*A-------------------------------------G    3

    
    UG*A-------------------------------------G    3

    
    AC*G------------------------------------GU    2

    
    GU*GG------------------------------------C    2

    
    CC*G-------------------------------------G    2

    
    CG*G-------------------------------------G    2

    
    CU*A-------------------------------------G    2

    
    UC*G-------------------------------------A    2

    
    UC*G-------------------------------------G    2

    
    UU*AGAUGAAGCUUAAAGGUUACGGAAAGUACCAAUAGUUAG    1

    
    CC*UAUUCGCCUUUAAUUAGACGCUAUG-------------G    1

    
    UA*UUGAGAGUGU----------------------------A    1

    
    UG*----------------------------UUGAGGGUGUA    1

    
    UG*UUGAGGGUGU----------------------------A    1

    
    AC*UUGAGAGUG-----------------------------U    1

    
    UC*GGAAAGAG------------------------------A    1

    
    CU*CAAG----------------------------------G    1

    
    AC*U-----------------------------------GGG    1

    
    UC*AC----------------------------------G-G    1

    
    AU*------------------------------------GGU    1

    
    CC*U------------------------------------GG    1

    
    AC*G-------------------------------------U    1

    
    AU*-------------------------------------UU    1

    
    CA*G-------------------------------------G    1

    
    CU*U-------------------------------------G    1

    
    GA*U-------------------------------------U    1

    
    GC*G-------------------------------------C    1

    
    GU*A-------------------------------------C    1

    
    GU*G-------------------------------------C    1

    
    UA*G-------------------------------------G    1

    
    UU*-------------------------------------AA    1

    
    UU*G-------------------------------------G    1

    
    Omitted sequenced and counts

    
    GG*--------------------------------------C   39

    
    UG*--------------------------------------G   38

    
    CG*--------------------------------------G   27

    
    UG*--------------------------------------C   13

    
    AG*--------------------------------------U   10

    
    UU*--------------------------------------A    7

    
    GC*--------------------------------------C    6

    
    UC*--------------------------------------A    6

    
    CU*--------------------------------------G    5

    
    UG*--------------------------------------A    5

    
    CC*--------------------------------------G    4

    
    UU*--------------------------------------G    4

    
    AA*--------------------------------------U    3

    
    AC*--------------------------------------U    3

    
    GA*--------------------------------------C    2

    
    GG*--------------------------------------U    2

    
    UC*--------------------------------------G    2

    
    -A*UUGAGGGUGU-----------------------------    1

    
    AU*--------------------------------------U    1

    
    CA*--------------------------------------G    1

    
    CG*--------------------------------------A    1

    
    GG*--------------------------------------A    1

    
    UA*--------------------------------------G    1

    
    UA*--------------------------------------U    1

    
    A-*--------------------------------------U    1

    
    CA*---------------------------------------    1

    
    -C*---------------------------------------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

59.62 -2975.83 3 1

Major groove platform

2

Motif group IL_84476.1

Basepair signature:
cWW-cWW

46.15 -3812.75 4 2

Multiple bulged bases

3

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

31.73 -3727.35 4 1

Intercalated cWS

4

Motif group IL_42771.1

Basepair signature:
cWW-cWW

31.73 -3829.73 3 1

Multiple bulged bases

5

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

29.81 -3847.42 2 1

Single bulged G

6

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

27.88 -3619.34 4 1

7

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

22.12 -401.70 10.5 9

Part of G-quadruplex

8

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

19.23 -3731.36 2 1

Single stack bend

9

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

19.23 -3733.56 4 1

10

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

18.27 -824.92 3 1

Major groove intercalation

11

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

18.27 -3842.42 4 1

12

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

18.27 -3844.98 3 1

Single stack bend

13

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

17.31 -3848.93 3 1

Stack and bulge

14

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

14.42 -3855.70 2 1

Single bulged U

15

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

14.42 -3872.43 3 1

Single bulged C

16

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

10.58 -3734.74 2 1

Major groove platform

17

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

8.65 -3899.40 2 1

Single bulged A

18

Motif group IL_82107.4

Basepair signature:
cWW-cWW

5.77 -3861.11 3 2

Multiple bulged bases

19

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

5.77 -3930.38 3.5 1

20

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

4.81 -3916.88 5 1

21

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

1.92 -3745.53 2 1

Minor groove platform

22

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

1.92 -3798.76 3 2

Isolated non-canonical cWW contact

23

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.96 -262.27 9 8

24

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.96 -778.55 5 3

Bulged stacked bases

25

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.96 -3777.59 3.5 2

Minor groove platform, major groove intercalation

26

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.96 -3944.19 3 2

27

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -247.36 9 7

28

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -254.33 10 9

29

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -254.87 10 9

30

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -255.02 9 7

31

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -281.07 10 9

32

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -283.63 11 10

33

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -288.07 7 6

34

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -294.78 8 7

35

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -295.81 10 8

36

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -303.56 12 11

Pseudoknot

37

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -304.21 9 8

38

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -304.80 16 16

39

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -306.43 10 7

40

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -311.27 10 8

Reverse kink-turn related

41

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -311.32 8 7

42

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -311.41 11 11

43

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -314.66 12 12

44

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -315.52 10 7

45

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -316.78 10 9

46

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -321.90 9 8

47

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -322.40 10 6

48

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -322.82 9 7

Vitamin B12 Aptamer

49

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -325.67 10 8

50

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -327.67 10 8

51

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -328.55 10 9

52

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -328.68 9 7

53

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -328.88 9 7

54

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -330.42 10 8

55

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -331.67 9 7

56

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -332.77 10 9

57

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -334.01 14 14

58

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -336.30 17 16

Kink-turn related

59

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -336.43 10 10

60

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -336.87 7 4

61

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -337.57 8 7

Minor groove platform

62

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -340.58 8 6

63

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -342.90 10 7

64

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -343.34 8 6

65

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -348.72 12 12

66

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -349.83 9 6

Pseudoknot

67

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -350.75 9 8

68

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -350.88 12 12

69

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -352.04 8 5

70

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -353.11 11 9

Reverse turn

71

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -359.73 10 10

72

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -366.44 12 10

73

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -368.90 7 6

Intercalated tWH

74

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -371.19 11 9

75

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -372.60 8 5

76

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -375.89 10 8

77

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -376.30 9 6

78

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -382.15 12 12

79

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -382.42 9 8

80

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -383.79 8 6

81

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -385.92 15 15

Pseudoknot

82

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -386.97 10.5 9

83

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -388.13 13 12

84

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -389.22 9 7

cWH basepair with bulged bases

85

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -390.40 13 12

86

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -391.56 19 18

Kink-turn

87

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -394.91 9 8

88

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -395.85 11.5 11

89

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -398.17 9 8

90

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -398.66 10 8

91

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -401.31 13 11

92

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -406.40 17 16

93

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -407.38 12 11

94

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -413.72 11 10

95

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -426.63 16 16

96

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -428.94 18 18

97

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -434.73 14 13

98

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -435.36 7 5

99

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -439.47 19 19

100

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -440.75 6 5

101

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -442.00 13 12

102

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -442.51 14 13

103

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -443.38 10 10

104

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -445.27 7 6

105

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -447.58 19 19

106

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -447.96 14 14

107

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -448.79 13 12

108

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -449.04 16 15

Pseudoknot

109

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -453.06 16 16

110

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -463.77 6 6

SSU/LSU pseudoknot

111

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -463.99 19 19

112

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -465.16 9 8

113

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -471.81 8.5 6

114

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -486.93 23 22

115

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -487.73 13 13

116

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -490.22 13 13

117

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -497.90 14 13

118

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -498.07 13 13

119

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -498.86 14 13

120

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -508.40 22 22

121

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -511.22 17 17

122

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -514.06 9 7

123

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -524.27 9 8

124

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -543.82 9 7

tSH-tHW

125

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -546.21 9 7

126

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -547.67 15 14

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

127

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -559.38 12 12

128

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -560.63 9 7

Kink-turn related

129

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -561.77 10 8

Kink-turn

130

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -561.84 9 8

131

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -564.16 11 10

132

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -564.70 9 6

133

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -568.10 8 5

134

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -568.27 8 6

135

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -568.80 8 7

136

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -568.85 8 7

137

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -570.05 8 6

138

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -571.71 10 9

139

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -574.11 7 5

140

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -574.76 9 9

Kink-turn

141

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -575.41 10 9

142

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -575.71 11 9

143

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -579.10 8 7

144

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -580.49 10 10

145

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -582.85 7 5

146

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -583.50 8 6

147

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -587.77 10 9

tHW-tHW cross-strand stack

148

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -589.46 8 5

149

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -589.58 8 5

Major groove intercalation

150

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -591.99 10 9

Sarcin-Ricin target in LSU H95; G-bulge

151

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -602.90 11 9

152

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -603.12 12 10

8x6 Sarcin-Ricin with inserted A; G-bulge

153

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -603.56 15 15

154

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -604.09 7 4

155

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -605.66 11 9

156

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -606.36 13 13

157

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -612.66 9 6

158

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -613.27 11 10

159

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -613.54 10 9

160

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -613.84 9 7

161

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -615.39 13 11

162

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -616.25 24 24

163

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -619.26 6 4

164

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -619.36 7 6

165

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -619.73 24 24

166

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -622.77 8 6

167

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -622.82 10 10

tSH-tHS-tHW

168

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -624.09 9 7

169

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -624.17 8 6

170

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -628.04 8 7

UAA/GAN related

171

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -631.40 9 7

172

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -631.54 8 5

173

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -632.22 11 10

174

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -637.25 10.5 7

Reverse kink-turn

175

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -640.32 10 8

176

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -642.69 10.5 10

177

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -645.32 9 8

Kink-turn with embedded cWW pair

178

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -648.61 13 11

179

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -652.37 14 14

10x8 Sarcin-Ricin; G-bulge

180

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -652.67 12 10

181

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -654.31 8 7

Kink-turn from U4

182

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -661.00 15 15

183

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -663.02 7 5

184

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -666.67 10.5 10

8x6 Sarcin-Ricin with inserted Y; G-bulge

185

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -666.85 8 6

186

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -668.24 10 7

187

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -670.87 12 11

Kink-turn

188

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -671.45 14 12

189

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -672.36 11 10

7x7 Sarcin-Ricin with intercalated A; G-bulge

190

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -672.69 8 7

191

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -675.82 9 9

Kink-turn

192

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -677.33 6 4

193

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -678.04 7 5

194

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -680.48 12 11

195

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -685.36 7 5

196

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -686.58 9 8

197

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -692.87 7 4

198

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -693.51 12 10

Minor groove platform related

199

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -701.35 14 13

200

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -702.45 7 6

tSH-tHW

201

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -709.33 7 4

202

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -712.17 13 13

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

203

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -713.78 8 6

204

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -716.15 6 3

Multiple bulged bases

205

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -719.63 8 5

206

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -720.40 9 7

207

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -723.91 15 14

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

208

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -724.67 8 6

209

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -726.77 14 13

210

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -726.94 8 6

180 degree turn

211

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -728.19 7 5

212

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -731.95 7 5

Decoding loop related

213

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -749.45 6 4

214

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -756.54 6 6

AAA cross-strand stack

215

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -761.96 6 4

216

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -764.79 7 5

217

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -776.67 6 5

218

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -784.15 8 5

Major groove intercalation

219

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -788.75 14 14

220

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -792.80 6 5

Isolated non-canonical cWW pair

221

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -817.13 7 6

222

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -823.78 8 5

223

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -848.92 4 2

224

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -856.03 5 2

225

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -856.43 21 21

226

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -864.66 7 3

227

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -865.18 5 3

228

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -870.62 5 3

Left turn

229

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -879.05 4 2

230

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -884.65 5 2

231

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -889.32 6 3

232

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -890.48 6 4

233

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -903.51 6 2

234

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -905.43 4 2

235

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -908.05 5.5 4

236

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -918.20 5 2

Major groove platform with intercalated tWH

237

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -923.21 8 6

UAA/GAN

238

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -925.49 7 4

239

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -938.65 5 4

240

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -956.56 4 3

241

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -960.75 4 3

242

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -964.80 6 4

243

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -976.64 4 3

244

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -977.15 5 3

Major groove minor groove platform with intercalation; mini C-loop

245

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -997.98 4 3

Decoding loop related

246

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -1001.14 6 5

247

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -1057.26 6 5

248

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -1618.20 16 15

249

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -1704.00 12 11

250

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -1720.25 14 14

251

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -1745.18 13 13

252

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -1774.47 16 16

253

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -1827.13 16 16

254

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -1847.67 14 13

tSH-tHW-tHH-tHS

255

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -1852.90 19 19

Kink-turn related

256

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -1921.50 9 7

257

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -1936.10 11 9

Kink-turn related

258

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -1967.66 10 10

259

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -1981.00 12 9

Reverse kink-turn related

260

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -1990.17 10 10

Kink-turn

261

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -1996.97 10 8

262

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -2007.87 12 11

Kink-turn

263

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -2022.72 8 7

Part of G-quadruplex

264

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -2027.89 11 11

8x7 Sarcin-Ricin; G-bulge

265

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -2028.63 11 10

8x6 Sarcin-Ricin with bulged A; G-bulge

266

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -2028.76 12 10

267

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -2031.37 15 14

268

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -2032.99 10 10

Triple sheared with non-canonical cWW

269

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -2033.51 10 8

Other IL

270

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -2035.01 11 9

tWH-tWH-tHW-tHW

271

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -2036.67 11 8

272

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -2051.15 10 9

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

273

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -2054.72 9 8

274

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -2061.90 11 11

8x7 Sarcin-Ricin; G-bulge

275

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -2067.33 21 21

276

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -2078.08 8 8

277

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -2082.95 6 5

278

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -2098.46 12 11

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

279

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -2100.60 11 10

280

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -2100.65 7.5 6

281

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -2109.84 9 9

Kink-turn

282

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -2113.65 14 14

Bacterial 5S Loop E

283

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -2118.22 10 9

Kink-turn

284

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -2120.25 13 11

285

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -2121.72 8 6

286

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -2125.88 11 9

Kink-turn

287

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -2129.11 11 11

288

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -2129.83 9 7

289

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -2147.38 9 8

Kink-turn related

290

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -2147.65 12 12

291

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -2149.65 12 11

292

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -2157.68 8 6

Kink-turn related

293

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -2160.72 10 9

tSH-tSH-tHH-tHS

294

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -2161.57 13 12

Kink-turn related

295

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -2187.63 8 7

Triple sheared related

296

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -2191.53 8 6

297

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -2198.01 9 9

7x6 Sarcin-Ricin; G-bulge

298

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -2202.87 14 14

299

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -2217.22 9 7

UAA/GAN with extra stack

300

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -2220.80 11 10

301

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -2220.89 9 8

Double sheared; A in syn; two near cWW pairs

302

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -2225.09 9 7

303

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -2225.99 10 10

Kink-turn with non-sequential stacking

304

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -2230.52 10 8

305

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -2232.28 8 7

6x5 Sarcin-Ricin; G-bulge

306

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -2233.17 12 10

Kink-turn

307

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -2263.30 17 16

308

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -2267.36 9 7

UAA/GAN with tHH

309

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -2270.80 9 9

Kink-turn

310

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -2278.40 8 6

311

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -2280.35 12 11

312

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -2283.50 12 11

313

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -2290.55 8 8

tSH-tWH-tHS-cWW

314

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -2316.94 8 7

Other IL

315

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -2359.69 16 14

316

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -2391.61 7 5

Receptor of 11-nt loop-receptor motif

317

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -2407.70 10 7

318

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -2408.66 10 8

tSH-tHW-tWH-tHS

319

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -2441.92 7 5

Receptor of 11-nt loop-receptor motif

320

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -2474.77 9 7

321

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -2485.87 7 5

322

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -2494.45 7 5

323

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -2501.91 9 8

UAA/GAN with extra cWW

324

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -2517.59 8 6

325

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -2529.59 9 6

326

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -2537.98 8 8

327

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -2622.38 8.5 7

tSH-tHH-tHS

328

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -2652.11 7 5

329

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -2707.05 9 8

Quadruple sheared

330

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -2720.09 6 5

331

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -2729.65 6 4

332

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -2804.84 6.5 4

8-nt loop receptor

333

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -2827.37 8 5

334

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -2830.84 6 4

335

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -2832.82 10 8

Kink-turn

336

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -2928.08 9 6

Symmetric double minor groove platform

337

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -2966.33 8 6

Triple sheared

338

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -2991.49 8 6

cWH basepair and non-canonical AC

339

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -3007.27 7 4

340

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -3025.88 6.5 4

341

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -3028.58 6 4

Tandem non-canonical cWW pairs

342

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -3034.44 7 4

343

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -3036.19 6 4

344

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -3039.65 7 5

345

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -3082.68 7 5

UAA/GAN

346

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -3091.66 6.5 5

347

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -3107.76 6 5

348

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -3165.60 8 4

349

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -3202.29 7 4

350

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -3233.52 6 4

Double sheared

351

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -3253.05 6 4

352

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -3256.57 6 4

353

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -3263.96 6 4

Other IL

354

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -3290.41 6 6

Double sheared with non-canonical cWW

355

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -3298.69 7 4

356

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -3353.46 6 4

357

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -3358.37 7 6

tSH-tWH-tHS

358

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -3366.94 7 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

359

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -3414.48 6 4

360

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -3459.14 8 4

Multiple bulged bases

361

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -3475.30 6 3

362

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -3498.08 5 3

363

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -3521.13 6 4

364

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -3521.93 6 5

tSH-tHW

365

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -3567.38 7 6

Triple non-canonical cWW pairs

366

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -3587.30 6 5

367

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -3591.32 7 4

Minor groove platform

368

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -3627.39 6 6

Triple sheared

369

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -3628.69 7 4

370

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -3705.45 4 2

371

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -3725.54 5 4

Tandem non-canonical cWW pairs

372

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -3739.87 7 4

373

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -3767.06 4 2

374

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -3773.95 5.5 3

375

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -3792.78 4 3

376

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -3817.95 3 2

Minor groove platform

377

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -3845.68 3 2

Major groove minor groove platform; mini C-loop

378

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -3874.16 5 3

379

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -3879.53 6 5

UAA/GAN related

380

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -3891.62 5 3

381

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -3900.85 3 2

Isolated non-canonical cWW pair

382

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -3908.59 4 2

Isolated non-canonical cWW pair

383

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -3910.56 4 2

Major groove platform with intercalation

384

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -3912.41 5 3

385

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -3917.11 2 2

Isolated non-canonical cWW pair

386

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -3918.81 4 2

Isolated tWW turn

387

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -3926.24 3 2

Isolated cWH basepair

388

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -3927.56 4 2

Isolated tHS basepair with bulges

389

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -3927.83 3 2

Isolated non-canonical cWW pair

390

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -3928.01 7 5

391

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -3929.46 3 2

Isolated cWS basepair

392

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -3934.12 5 2

393

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -3943.23 6 3

394

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -3947.07 3 2

Isolated non-canonical cWW pair

395

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -3951.36 5 4

396

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -4001.50 6 5

UAA/GAN variation

397

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -4018.32 5 4

398

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -4047.15 5 4

Tandem non-canonical cWW pairs

399

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -4048.49 4 2

Major groove platform; stack outside cWW

400

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -4048.53 6 3

Minor groove platform

401

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -4063.08 6 4

402

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -4066.07 4 4

Double sheared

403

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6273.57 11 9

404

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7053.70 7 5

C-loop with bulged stacked A's

405

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8771.61 6 4

C-loop

406

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9853.07 5 2

407

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 5 3

C-loop

408

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 23 21

409

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 18 18

410

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 24 23

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 6 4

Coloring options: