RNA 3D Hub

JAR3D Query RF03121-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

There are no chains in PDB that we map to Rfam family RF03121.

Rfam family RF03121 is part of clan CL00117, which includes Rfam families RF03121, RF03123, RF03125, RF03122, RF00164, RF03124, RF00165 .
There is 1 chain in PDB that we map to these Rfam families: 1XJR|1|A . See it at RNA 3D Hub by filtering on Rfam family, clan, or chain.

Loop 12 Internal loop

Column numbers: 221-222, 237-253 
    Scored sequences and counts

    
    UC*A---------------A    7

    
    UC*U---------------A    3

    
    UC*AUGUCUGCCAGUGAGUA    1

    
    AC*G---------------G    1

    
    AU*U---------------A    1

    
    Omitted sequenced and counts

    
    U-*A---------------A    3

    
    UC*U----------------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_84476.1

Basepair signature:
cWW-cWW

84.62 -834.90 4 2

Multiple bulged bases

2

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

76.92 -650.75 3 1

Major groove platform

3

Motif group IL_42771.1

Basepair signature:
cWW-cWW

53.85 -843.88 2 1

Multiple bulged bases

4

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -187.79 6 4

5

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -192.87 9 6

6

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -211.38 10 7

7

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -211.99 6 5

8

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -214.80 9 7

9

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -219.21 7 7

10

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -222.79 8 6

11

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -223.21 9 6

Pseudoknot

12

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -224.06 8 6

13

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -225.11 8 7

Vitamin B12 Aptamer

14

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -225.98 6 5

15

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -226.95 8 7

16

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -227.20 11 8

17

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -229.40 7 6

Intercalated tWH

18

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -229.86 9 8

19

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -232.37 8 6

20

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -233.60 9 8

21

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -238.02 12 8

Reverse kink-turn related

22

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -238.41 9 7

23

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -244.81 7 6

24

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -247.73 8 6

25

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -248.51 11 9

26

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -250.40 9 7

27

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -251.19 11 9

28

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -252.06 9 8

29

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -254.07 10 9

Reverse turn

30

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -256.45 11 8

31

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -256.59 7 5

32

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -260.09 10 7

33

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -261.75 10 8

34

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -264.54 8 7

35

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -268.15 11 9

36

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -271.15 9 8

37

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -271.42 8 7

Minor groove platform

38

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -274.79 9 9

39

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -276.05 8 8

40

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -276.68 10 8

41

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -279.81 5 5

42

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -280.98 10 9

43

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -281.28 7 7

44

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -283.06 8 6

45

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -283.64 10 8

46

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -283.80 9 8

47

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -289.69 10 8

48

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -292.25 12 10

49

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -293.88 9 7

50

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -296.59 11 9

51

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -297.09 11 10

52

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -297.82 12 10

53

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -298.99 10 10

54

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -299.20 11 9

55

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -305.13 8 7

cWH basepair with bulged bases

56

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -310.23 11 10

57

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -311.80 12 11

Pseudoknot

58

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -317.43 12 12

59

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -323.88 13 12

60

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -324.81 12 8

61

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -325.17 10 9

62

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -326.93 13 11

63

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -328.67 13 11

64

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -331.17 12 11

65

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -338.85 13 12

66

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -340.35 14 14

67

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -344.66 10 10

68

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -345.93 14 12

69

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -357.77 18 16

Kink-turn related

70

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -359.90 17 15

71

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -362.02 16 16

72

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -365.39 17 16

73

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -366.02 12 9

Part of G-quadruplex

74

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -369.67 12 12

75

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -370.29 13 12

76

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -371.40 13 12

77

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -374.81 14 11

78

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -384.82 12 12

79

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -386.49 16 15

Pseudoknot

80

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -386.61 7 6

SSU/LSU pseudoknot

81

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -398.53 14 13

82

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -399.06 15 14

83

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -408.55 13 13

84

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -408.91 16 16

85

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -411.41 14 13

86

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -412.12 20 18

Kink-turn

87

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -413.14 14 13

88

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -413.16 17 16

89

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -420.29 14 13

90

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -424.23 14 13

91

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -431.24 14 13

92

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -447.31 17 17

93

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -447.54 19 18

94

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -458.73 15 14

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

95

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -462.50 19 19

96

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -464.25 20 19

97

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -464.36 16 15

Pseudoknot

98

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -478.56 20 19

99

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -547.55 23 22

100

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -560.15 10 6

101

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -571.23 22 22

102

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -571.60 8 7

103

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -573.12 9 7

104

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -586.38 8 5

105

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -590.31 9 8

106

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -593.55 8 7

tSH-tHW

107

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -603.91 9 6

108

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -607.35 8 7

Part of G-quadruplex

109

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -608.97 24 24

110

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -610.92 9 9

111

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -615.52 8 7

112

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -616.69 8 8

113

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -622.90 10 8

Other IL

114

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -623.64 7 6

115

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -623.72 9 6

Kink-turn related

116

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -625.17 9 8

117

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -625.91 10 9

118

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -626.38 11 10

119

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -626.50 9 8

120

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -627.32 5 4

121

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -629.77 14 13

122

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -631.70 13 11

123

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -631.94 8 6

124

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -633.20 10 9

Kink-turn related

125

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -633.63 10 7

126

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -634.31 10 9

tWH-tWH-tHW-tHW

127

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -634.40 25 24

128

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -634.98 9 8

129

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -635.22 8 7

130

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -636.50 10 9

131

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -639.85 10 10

132

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -642.13 9 9

Sarcin-Ricin target in LSU H95; G-bulge

133

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -643.86 10 8

134

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -645.01 8 5

135

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -645.05 8 6

136

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -645.61 10 8

Kink-turn

137

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -647.17 10 9

Kink-turn

138

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -647.92 6 5

139

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -648.03 8 8

140

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -649.51 9 9

141

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -649.53 11 9

Reverse kink-turn related

142

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -652.17 11 11

143

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -653.22 8 6

144

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -653.49 7 6

145

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -655.46 8 7

Triple sheared related

146

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -656.20 7 7

147

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -657.29 9 9

tHW-tHW cross-strand stack

148

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -657.45 7 5

Receptor of 11-nt loop-receptor motif

149

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -659.97 7 6

150

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -661.06 5 5

151

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -661.50 7 7

UAA/GAN with tHH

152

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -661.59 9 9

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

153

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -662.96 9 9

154

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -664.25 15 15

155

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -665.11 7 6

156

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -665.51 8 5

157

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -665.78 6 5

158

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -667.11 12 10

8x6 Sarcin-Ricin with inserted A; G-bulge

159

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -667.21 11 10

160

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -669.55 8 7

Kink-turn related

161

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -670.75 11 10

162

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -671.29 6 5

Receptor of 11-nt loop-receptor motif

163

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -672.51 10 9

Kink-turn

164

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -673.30 11 10

165

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -673.52 15 14

166

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -674.04 10 10

tSH-tHS-tHW

167

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -674.50 9 7

168

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -675.49 8 7

UAA/GAN with extra stack

169

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -676.93 14 12

170

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -677.50 11 10

171

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -678.77 8 7

172

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -678.85 10 10

173

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -679.47 8 7

6x5 Sarcin-Ricin; G-bulge

174

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -679.67 5 5

175

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -679.67 6 5

176

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -680.46 10 10

177

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -682.19 9 6

178

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -686.02 7 6

179

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -686.79 10 10

8x6 Sarcin-Ricin with inserted Y; G-bulge

180

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -686.81 10 10

7x7 Sarcin-Ricin with intercalated A; G-bulge

181

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -687.07 10 10

Kink-turn

182

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -688.23 9 9

tSH-tSH-tHH-tHS

183

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -689.66 7 7

184

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -689.72 10 10

Triple sheared with non-canonical cWW

185

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -692.07 11 11

8x7 Sarcin-Ricin; G-bulge

186

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -692.11 11 9

187

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -692.17 10 9

Kink-turn

188

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -692.56 15 15

189

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -692.65 11 10

8x6 Sarcin-Ricin with bulged A; G-bulge

190

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -692.94 9 8

Double sheared; A in syn; two near cWW pairs

191

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -695.16 7 6

192

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -696.64 9 8

tSH-tWH-tHS-cWW

193

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -696.90 11 10

194

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -697.15 13 13

tSH-tHW-tHH-tHS

195

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -697.55 7 6

196

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -699.64 7 7

197

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -700.05 9 9

7x6 Sarcin-Ricin; G-bulge

198

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -700.26 9 7

Reverse kink-turn

199

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -705.80 15 14

10x8 Sarcin-Ricin; G-bulge

200

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -706.70 8 7

Other IL

201

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -706.76 11 11

202

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -708.74 7 6

203

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -709.66 10 8

204

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -709.87 8 7

UAA/GAN related

205

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -711.45 10 9

Kink-turn

206

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -712.08 16 16

207

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -713.07 6 6

208

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -714.07 8 7

209

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -717.10 12 11

Kink-turn

210

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -719.07 11 8

211

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -719.64 8 8

Kink-turn with embedded cWW pair

212

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -721.51 13 13

213

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -721.66 7 7

214

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -722.74 8 8

215

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -724.02 9 7

Kink-turn from U4

216

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -724.12 11 11

8x7 Sarcin-Ricin; G-bulge

217

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -725.54 12 11

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

218

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -725.99 11 11

219

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -726.92 6 5

220

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -727.49 6 5

221

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -727.87 9 7

222

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -728.86 12 11

Kink-turn

223

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -728.92 12 11

224

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -729.97 8 8

tSH-tHW-tWH-tHS

225

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -730.96 12 11

226

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -735.32 17 16

227

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -736.59 9 7

228

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -736.78 7 6

tSH-tHW

229

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -737.11 9 9

Kink-turn

230

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -737.61 7 7

231

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -738.62 13 13

232

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -738.69 9 8

Kink-turn related

233

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -739.45 6 4

234

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -739.85 11 10

Kink-turn

235

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -740.72 13 13

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

236

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -741.60 9 9

Kink-turn

237

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -742.22 11 11

238

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -744.22 14 13

239

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -744.42 11 10

240

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -746.51 8 5

Major groove intercalation

241

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -746.65 8 6

242

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -747.13 6 4

243

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -748.92 6 5

244

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -750.00 6 5

245

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -754.36 13 12

246

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -754.80 8 6

247

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -757.26 8 7

tSH-tHH-tHS

248

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -768.22 9 5

249

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -768.86 12 10

Minor groove platform related

250

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -770.47 6 5

Decoding loop related

251

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -772.93 12 12

Kink-turn related

252

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -775.51 4 4

253

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -780.07 8 8

254

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -780.24 7 6

AAA cross-strand stack

255

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -790.91 14 14

Bacterial 5S Loop E

256

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -791.12 7 6

257

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -793.01 8 8

UAA/GAN with extra cWW

258

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -794.97 4 4

259

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -795.80 6 4

Tandem non-canonical cWW pairs

260

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -799.24 5 4

261

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -805.94 10 10

Kink-turn with non-sequential stacking

262

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -806.01 13 12

263

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -807.23 6 4

264

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -809.51 6 3

Multiple bulged bases

265

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -810.83 5 4

266

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -813.55 5 4

267

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -819.32 6 5

268

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -826.11 8 5

269

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -828.16 15 14

270

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -830.72 15 14

271

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -830.94 13 11

272

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -831.32 9 8

Quadruple sheared

273

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -832.73 7 5

274

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -832.75 7 6

180 degree turn

275

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -833.54 20 19

Kink-turn related

276

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -834.64 13 11

277

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -836.28 14 14

278

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -837.01 14 14

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

279

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -837.29 6 4

280

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -837.43 6 4

Double sheared

281

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -838.38 7 6

cWH basepair and non-canonical AC

282

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -841.99 7 5

283

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -842.36 4 1

284

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -843.40 6 4

285

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -843.71 2 1

Intercalated cWS

286

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -843.72 7 5

287

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -844.73 9 6

Triple sheared

288

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -844.98 6 5

289

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -848.94 2 1

Major groove intercalation

290

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -852.40 6 4

291

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -853.78 2 1

Single bulged G

292

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -855.93 5 4

Other IL

293

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -856.07 2 1

Single stack bend

294

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -856.42 6 4

8-nt loop receptor

295

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -856.48 3 1

296

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -857.18 1 1

Single stack bend

297

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -859.13 5 1

298

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -861.03 3 1

Stack and bulge

299

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -861.72 5 5

300

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -864.07 6 5

301

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -873.26 1 1

Single bulged C

302

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -875.60 2 1

Single bulged U

303

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -879.22 5 3

Bulged stacked bases

304

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -881.74 6 4

305

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -882.93 2 1

Single bulged A

306

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -887.51 21 21

307

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -893.27 7 5

UAA/GAN

308

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -893.80 7 4

309

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -894.69 11 7

310

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -900.69 4 2

311

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -906.41 7 4

312

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -906.50 7 4

313

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -906.82 7 3

314

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -909.15 6 6

UAA/GAN

315

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -910.20 6 4

316

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -913.50 3 2

Isolated non-canonical cWW pair

317

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -914.58 3 2

318

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -915.57 16 16

319

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -916.28 3 2

Multiple bulged bases

320

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -917.35 4 2

321

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -917.52 6 5

Isolated non-canonical cWW pair

322

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -921.01 2 2

Isolated tWW turn

323

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -922.27 2 2

Isolated non-canonical cWW pair

324

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -923.04 7 4

325

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -923.52 7 6

326

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -923.58 3 2

Isolated non-canonical cWW pair

327

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -925.62 3 2

328

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -929.85 3 3

329

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -930.32 3 2

Isolated cWS basepair

330

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -930.46 3 2

331

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -930.94 4 2

332

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -931.42 4 2

333

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -932.07 3 2

Isolated non-canonical cWW contact

334

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -932.36 5 4

335

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -933.64 3 2

Isolated non-canonical cWW pair

336

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -934.58 3 2

Isolated non-canonical cWW pair

337

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -934.95 5 2

338

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -935.85 4 2

Isolated tHS basepair with bulges

339

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -937.29 15 14

340

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -938.72 6 4

341

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -939.32 21 21

342

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -939.74 4 2

343

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -945.73 6 4

344

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -946.17 6 5

345

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -947.21 6 6

Double sheared with non-canonical cWW

346

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -948.26 6 5

Major groove intercalation

347

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -950.48 3 2

Isolated cWH basepair

348

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -951.46 6 4

349

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -952.86 6 4

Multiple bulged bases

350

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -958.46 4 1

351

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -960.15 2 1

Minor groove platform

352

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -966.11 6 5

tSH-tHW

353

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -970.14 6 3

354

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -971.54 6 3

355

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -972.51 5 3

356

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -972.58 6 6

tSH-tWH-tHS

357

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -973.45 5 3

358

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -974.31 4 3

359

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -976.45 7 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

360

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -982.52 4 3

361

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -983.41 5 4

Tandem non-canonical cWW pairs

362

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -984.56 6 3

363

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -986.58 4 4

364

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -987.09 10 8

Kink-turn

365

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -993.87 2 1

366

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -999.35 4 3

367

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -1001.01 2 1

Major groove platform

368

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -1001.55 4 3

Left turn

369

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -1006.23 5 3

370

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -1008.86 6 4

371

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -1011.70 3 2

Major groove platform with intercalated tWH

372

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -1014.50 6 4

373

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -1018.14 5 3

374

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1018.91 6 3

375

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -1020.88 5 4

376

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -1022.15 4 3

Decoding loop related

377

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -1025.08 3 2

378

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -1025.53 7 6

Triple non-canonical cWW pairs

379

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -1033.84 5 3

380

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -1041.37 6 5

381

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -1051.02 5 4

382

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1054.13 6 4

383

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -1056.17 7 6

Triple sheared

384

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -1056.77 4 2

Minor groove platform, major groove intercalation

385

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -1061.94 6 4

Minor groove platform

386

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -1069.21 5 4

Tandem non-canonical cWW pairs

387

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -1079.63 8 6

Symmetric double minor groove platform

388

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -1079.89 4 4

Double sheared

389

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -1083.75 3 2

Major groove platform with intercalation

390

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -1085.29 5 4

391

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -1086.91 6 5

392

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -1088.28 6 5

393

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -1088.99 5 4

394

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -1098.97 6 5

395

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -1107.12 7 5

UAA/GAN related

396

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -1142.23 4 3

Minor groove platform

397

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -1143.42 6 5

UAA/GAN variation

398

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -1148.64 4 2

Minor groove platform

399

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -1158.33 3 2

Major groove minor groove platform; mini C-loop

400

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -1165.59 3 2

Major groove platform; stack outside cWW

401

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -1177.63 6 3

Major groove minor groove platform with intercalation; mini C-loop

402

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -1195.46 5 4

403

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6260.78 9 9

404

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7017.45 6 5

C-loop with bulged stacked A's

405

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8882.70 5 4

C-loop

406

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 5 4

407

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 3 2

408

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 24 23

409

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 19 18

410

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 23 21

411

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 4 3

C-loop

Coloring options: