RNA 3D Hub //

5T6R Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5T6R_0011/A/38:45No text annotation
Not in a motif group		homologous
HL_5TBW_001
HL_06192.2
HL_5T6R_0021/A/69:74No text annotation
Not in a motif group		homologous
HL_5TBW_002
HL_02862.2
HL_5T6R_0031/A/90:96No text annotation
Not in a motif group		homologous
HL_5TBW_003
HL_67216.7
HL_5T6R_0041/A/132:136No text annotation
Not in a motif group		homologous
HL_8C3A_004
HL_98426.1
HL_5T6R_0051/A/194:201T-loop with 1 bulged base
Not in a motif group		homologous
HL_5TBW_005
HL_89380.2
HL_5T6R_0061/A/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_5T6R_0071/A/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.8
HL_5T6R_0081/A/278:287No text annotation
Not in a motif group		homologous
HL_5TBW_008
HL_71554.2
HL_5T6R_0101/A/357:362No text annotation
Not in a motif group		homologous
HL_8C3A_010
HL_42097.1
HL_5T6R_0111/A/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_5T6R_0121/A/540:551No text annotation
Not in a motif group
HL_5T6R_0131/A/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_5T6R_0141/A/640:649T-loop with 2 stacked bulged bases
Not in a motif group		homologous
HL_5TBW_014
HL_89380.2
HL_5T6R_0151/A/686:694No text annotation
Not in a motif group		homologous
HL_8C3A_015
HL_03345.1
HL_5T6R_0171/A/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_5T6R_0221/A/958:963No text annotation
Not in a motif group		homologous
HL_5TBW_022
HL_94803.1
HL_5T6R_0261/A/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_5T6R_0291/A/1347:1357No text annotation
Not in a motif group		homologous
HL_5TBW_029
HL_89098.1
HL_5T6R_0301/A/1403:1408GNRA
Not in a motif group		homologous
HL_5TBW_030
HL_42097.1
HL_5T6R_0661/A/3025:3030GNRA
Not in a motif group		geometric
HL_5J7L_197
HL_42097.1
HL_5T6R_0671/A/3068:3073Ribsomal LSU H95
Not in a motif group		homologous
HL_5TBW_066
HL_46680.1
HL_5T6R_0681/A/3110:3124No text annotation
Not in a motif group		homologous
HL_8C3A_068
HL_56677.7
HL_5T6R_0691/A/3194:3197No text annotation
Not in a motif group		geometric
HL_5TBW_068
HL_98426.1
HL_5T6R_0711/A/3303:3311No text annotation
Not in a motif group		homologous
HL_8C3A_071
HL_27930.1
HL_5T6R_0731/B/36:41No text annotation
Not in a motif group		homologous
HL_5TBW_185
HL_87939.1
HL_5T6R_0741/B/88:93GNRA
Not in a motif group		homologous
HL_5TBW_186
HL_42097.1
HL_5T6R_0751/C/69:89No text annotation
Not in a motif group
HL_5T6R_0761/C/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_5T6R_0771/C/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_5T6R_009No text annotation
HL_5T6R_016GNRA
HL_5T6R_018No text annotation
HL_5T6R_019GNRA
HL_5T6R_020No text annotation
HL_5T6R_021No text annotation
HL_5T6R_023GNRA
HL_5T6R_024No text annotation
HL_5T6R_025No text annotation
HL_5T6R_027No text annotation
HL_5T6R_028No text annotation
HL_5T6R_031T-loop with 2 stacked bulged bases
HL_5T6R_032No text annotation
HL_5T6R_033No text annotation
HL_5T6R_034No text annotation
HL_5T6R_035No text annotation
HL_5T6R_036GNRA
HL_5T6R_037No text annotation
HL_5T6R_038No text annotation
HL_5T6R_039No text annotation
HL_5T6R_040No text annotation
HL_5T6R_041No text annotation
HL_5T6R_042GNRA with one bulged base
HL_5T6R_043No text annotation
HL_5T6R_044No text annotation
HL_5T6R_045No text annotation
HL_5T6R_046No text annotation
HL_5T6R_047No text annotation
HL_5T6R_048Other HL
HL_5T6R_049No text annotation
HL_5T6R_050No text annotation
HL_5T6R_051No text annotation
HL_5T6R_052No text annotation
HL_5T6R_053No text annotation
HL_5T6R_054No text annotation
HL_5T6R_055No text annotation
HL_5T6R_056No text annotation
HL_5T6R_057No text annotation
HL_5T6R_058No text annotation
HL_5T6R_059No text annotation
HL_5T6R_060GNRA
HL_5T6R_061No text annotation
HL_5T6R_062No text annotation
HL_5T6R_063No text annotation
HL_5T6R_064No text annotation
HL_5T6R_065GNRA
HL_5T6R_070No text annotation
HL_5T6R_072No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5T6R_0011/A/7:8,
1/C/150:152		Single bulged C
Not in a motif group		homologous
IL_5TBW_002
IL_61258.12
IL_5T6R_0021/A/13:15,
1/C/144:145		No text annotation
Not in a motif group		homologous
IL_8C3A_003
IL_83039.13
IL_5T6R_0031/A/27:28,
1/A/56:58		Single stack bend
Not in a motif group		homologous
IL_5TBW_004
IL_76488.2
IL_5T6R_0041/A/31:38,
1/A/45:53		tSH-tHW-tHH-tHS
Not in a motif group		geometric
IL_5TBW_005
IL_35728.2
IL_5T6R_0051/A/82:89,
1/A/97:103		No text annotation
Not in a motif group		homologous
IL_5TBW_006
IL_88613.1
IL_5T6R_0061/A/123:124,
1/A/144:149		No text annotation
Not in a motif group		homologous
IL_8C3A_007
IL_19724.2
IL_5T6R_0071/A/125:127,
1/A/141:143		No text annotation
Not in a motif group		homologous
IL_8C3A_008
IL_95997.1
IL_5T6R_0091/A/168:174,
1/A/244:254		No text annotation
Not in a motif group
IL_5T6R_0101/A/174:180,
1/A/236:244		No text annotation
Not in a motif group
IL_5T6R_0111/A/189:191,
1/A/204:205		No text annotation
Not in a motif group		homologous
IL_8C3A_013
IL_83039.13
IL_5T6R_0121/A/337:339,
1/C/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_5T6R_0131/A/376:379,
1/A/390:403		No text annotation
Not in a motif group		homologous
IL_8C3A_015
IL_60992.6
IL_5T6R_0141/A/404:410,
1/C/13:19		Triple sheared with non-canonical cWW
Not in a motif group		geometric
IL_5TBW_015
IL_66414.6
IL_5T6R_0151/A/429:431,
1/A/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_5T6R_0171/A/512:513,
1/A/577:579		Single bulged A
Not in a motif group		homologous
IL_5TBW_018
IL_37497.2
IL_5T6R_0181/A/517:525,
1/A/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_5T6R_0191/A/531:538,
1/A/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_5T6R_0201/A/668:670,
1/A/792:794		No text annotation
Not in a motif group		homologous
IL_8C3A_023
IL_95997.1
IL_5T6R_0211/A/680:684,
1/A/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_5T6R_0221/A/725:728,
1/A/741:745		UAA/GAN
Not in a motif group		homologous
IL_5TBW_023
IL_07235.1
IL_5T6R_0231/A/752:753,
1/A/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_5T6R_0241/A/755:756,
1/A/775:777		Single bulged U
Not in a motif group		homologous
IL_5TBW_025
IL_83039.13
IL_5T6R_0261/A/803:805,
1/A/938:940		No text annotation
Not in a motif group		homologous
IL_8C3A_029
IL_95997.1
IL_5T6R_0271/A/805:809,
1/A/931:938		No text annotation
Not in a motif group		geometric
IL_5TBW_028
IL_17470.6
IL_5T6R_0331/A/954:956,
1/A/965:967		No text annotation
Not in a motif group		homologous
IL_5TBW_034
IL_95997.1
IL_5T6R_0341/A/969:970,
1/A/1111:1113		Single stack bend
Not in a motif group		homologous
IL_5TBW_035
IL_76488.2
IL_5T6R_0351/A/977:981,
1/A/1102:1104		No text annotation
Not in a motif group		homologous
IL_5TBW_036
IL_67474.4
IL_5T6R_0361/A/983:985,
1/A/1099:1100		Single bulged G
Not in a motif group		homologous
IL_5TBW_037
IL_00225.2
IL_5T6R_0451/A/1120:1122,
1/A/1136:1138		No text annotation
Not in a motif group		homologous
IL_5TBW_046
IL_95997.1
IL_5T6R_0461/A/1167:1171,
1/A/1328:1332		UAA/GAN
Not in a motif group		homologous
IL_5TBW_048
IL_89002.2
IL_5T6R_0471/A/1173:1180,
1/A/1325:1326		SSU/LSU pseudoknot
Not in a motif group		homologous
IL_5TBW_049
IL_15861.7
IL_5T6R_0481/A/1180:1182,
1/A/1324:1325		Single bulged U
Not in a motif group		geometric
IL_5TBW_050
IL_83039.13
IL_5T6R_0511/A/1207:1209,
1/A/1296:1297		Single bulged U
Not in a motif group		homologous
IL_5TBW_053
IL_83039.13
IL_5T6R_0541/A/1376:1378,
1/A/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_5T6R_0561/A/1388:1395,
1/A/1415:1419		Kink-turn
Not in a motif group		homologous
IL_5TBW_059
IL_70923.2
IL_5T6R_0581/A/1444:1450,
1/A/2354:2359		7x6 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_061
IL_76042.2
IL_5T6R_1131/A/3004:3007,
1/A/3139:3144		Double sheared
Not in a motif group		homologous
IL_5TBW_114
IL_09705.9
IL_5T6R_1141/A/3012:3014,
1/A/3040:3042		No text annotation
Not in a motif group		homologous
IL_5TBW_115
IL_95997.1
IL_5T6R_1151/A/3018:3025,
1/A/3030:3036		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_116
IL_04346.7
IL_5T6R_1161/A/3047:3051,
1/A/3091:3094		Major groove minor groove platform with tHH
Not in a motif group		homologous
IL_5TBW_117
IL_37712.2
IL_5T6R_1171/A/3054:3059,
1/A/3084:3088		UAA/GAN related
Not in a motif group		homologous
IL_5TBW_118
IL_17136.1
IL_5T6R_1191/A/3103:3107,
1/A/3127:3131		No text annotation
Not in a motif group		homologous
IL_8C3A_129
IL_89002.2
IL_5T6R_1201/A/3163:3166,
1/A/3284:3287		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_6CZR_168
IL_67743.1
IL_5T6R_1221/A/3177:3179,
1/A/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_37497.2
IL_5T6R_1231/A/3179:3188,
1/A/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_15174.1
IL_5T6R_1241/A/3193:3194,
1/A/3197:3199		Single bulged U
Not in a motif group		homologous
IL_5TBW_125
IL_83039.13
IL_5T6R_1281/A/3300:3303,
1/A/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_5TBW_129
IL_30621.2
IL_5T6R_1291/A/3318:3320,
1/A/3387:3388		Single bulged U
Not in a motif group		geometric
IL_5TBW_130
IL_83039.13
IL_5T6R_1301/A/3324:3325,
1/A/3381:3383		Single bulged U
Not in a motif group		homologous
IL_5TBW_131
IL_83039.13
IL_5T6R_1321/A/3332:3337,
1/A/3367:3371		No text annotation
Not in a motif group		homologous
IL_8C3A_139
IL_83162.5
IL_5T6R_1351/B/15:16,
1/B/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_5T6R_1361/B/21:27,
1/B/53:58		No text annotation
Not in a motif group		homologous
IL_5TBW_373
IL_10207.2
IL_5T6R_1371/B/28:29,
1/B/49:52		Minor groove platform
Not in a motif group		geometric
IL_5TBW_374
IL_63797.2
IL_5T6R_1381/B/29:30,
1/B/47:49		Single stack bend
Not in a motif group		homologous
IL_5TBW_375
IL_76488.2
IL_5T6R_1391/B/32:36,
1/B/41:45		Symmetric double minor groove platform
Not in a motif group		geometric
IL_5TBW_376
IL_58103.6
IL_5T6R_1401/B/72:80,
1/B/100:106		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_377
IL_04346.7
IL_5T6R_1411/B/84:87,
1/B/94:96		No text annotation
Not in a motif group		homologous
IL_5TBW_378
IL_95997.1
IL_5T6R_1421/C/44:64,
1/C/96:100		No text annotation
Not in a motif group		geometric
IL_5TBW_144
IL_44998.1
IL_5T6R_1431/C/64:66,
1/C/93:96		Isolated non-canonical cWW with bulges
Not in a motif group		homologous
IL_5TBW_145
IL_82068.2
IL_5T6R_1441/C/68:69,
1/C/89:91		Single bulged U
Not in a motif group		geometric
IL_5TBW_146
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_5T6R_008No text annotation
IL_5T6R_016No text annotation
IL_5T6R_025No text annotation
IL_5T6R_028No text annotation
IL_5T6R_029Triple sheared
IL_5T6R_030No text annotation
IL_5T6R_031Single bulged U
IL_5T6R_032Multiple bulged bases
IL_5T6R_0377x7 Sarcin-Ricin with intercalated A; G-bulge
IL_5T6R_038Minor groove platform
IL_5T6R_039No text annotation
IL_5T6R_040Tandem non-canonical cWW pairs
IL_5T6R_041No text annotation
IL_5T6R_042No text annotation
IL_5T6R_043No text annotation
IL_5T6R_044Single bulged A
IL_5T6R_049No text annotation
IL_5T6R_050No text annotation
IL_5T6R_052Kink-turn
IL_5T6R_053No text annotation
IL_5T6R_055No text annotation
IL_5T6R_057Single bulged A
IL_5T6R_059No text annotation
IL_5T6R_060No text annotation
IL_5T6R_061No text annotation
IL_5T6R_062Multiple bulged bases
IL_5T6R_063No text annotation
IL_5T6R_064Triple sheared
IL_5T6R_065No text annotation
IL_5T6R_066No text annotation
IL_5T6R_067Single stack bend
IL_5T6R_068No text annotation
IL_5T6R_069No text annotation
IL_5T6R_070Kink-turn
IL_5T6R_071No text annotation
IL_5T6R_072No text annotation
IL_5T6R_073Major groove platform; stack outside cWW
IL_5T6R_074Intercalated tWH
IL_5T6R_075tSH-tSH-tHH-tHS
IL_5T6R_076No text annotation
IL_5T6R_077No text annotation
IL_5T6R_078Single stack bend
IL_5T6R_079No text annotation
IL_5T6R_080Kink-turn related
IL_5T6R_081Major groove outside cWW, minor groove, intercalation pocket
IL_5T6R_082No text annotation
IL_5T6R_083Single bulged U
IL_5T6R_084Major groove platform with extra pair
IL_5T6R_085No text annotation
IL_5T6R_086No text annotation
IL_5T6R_087No text annotation
IL_5T6R_088Major groove platform with extra pair
IL_5T6R_089No text annotation
IL_5T6R_090Single bulged U
IL_5T6R_091Minor groove platform
IL_5T6R_092No text annotation
IL_5T6R_093Single stack bend
IL_5T6R_094No text annotation
IL_5T6R_095No text annotation
IL_5T6R_096No text annotation
IL_5T6R_097Single bulged A
IL_5T6R_098Isolated tHS basepair with bulges
IL_5T6R_099Tandem non-canonical cWW pairs
IL_5T6R_100No text annotation
IL_5T6R_101Major groove platform
IL_5T6R_102No text annotation
IL_5T6R_103Major groove platform
IL_5T6R_104No text annotation
IL_5T6R_105No text annotation
IL_5T6R_106Major groove platform
IL_5T6R_107No text annotation
IL_5T6R_108Multiple bulged bases
IL_5T6R_109No text annotation
IL_5T6R_110Minor groove platform with intercalation
IL_5T6R_111No text annotation
IL_5T6R_112Single bulged A
IL_5T6R_118No text annotation
IL_5T6R_121No text annotation
IL_5T6R_125No text annotation
IL_5T6R_126No text annotation
IL_5T6R_127Tandem non-canonical cWW pairs
IL_5T6R_131No text annotation
IL_5T6R_133No text annotation
IL_5T6R_134Multiple bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5T6R_0011/A/369:376,
1/A/403:404,
1/C/19:20		No text annotation
Not in a motif group		homologous
J3_5TBW_002
NA
J3_5T6R_0021/A/502:503,
1/A/588:597,
1/A/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA
J3_5T6R_0141/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_5T6R_0151/B/9:14,
1/B/66:68,
1/B/110:112		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
J3_5T6R_003No text annotation
J3_5T6R_004No text annotation
J3_5T6R_005No text annotation
J3_5T6R_006No text annotation
J3_5T6R_007No text annotation
J3_5T6R_008No text annotation
J3_5T6R_009No text annotation
J3_5T6R_010No text annotation
J3_5T6R_011No text annotation
J3_5T6R_012No text annotation
J3_5T6R_013No text annotation

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