6SJ6 | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_6SJ6_001 ➜	1/A/67:74	NA	NA
2	HL_6SJ6_002 ➜	1/A/87:95	NA	NA
3	HL_6SJ6_003 ➜	1/A/122:127	NA	NA
4	HL_6SJ6_004 ➜	1/A/135:144	NA	NA
5	HL_6SJ6_005 ➜	1/A/153:175	NA	NA
6	HL_6SJ6_006 ➜	1/A/190:212	NA	NA
7	HL_6SJ6_008 ➜	1/A/249:255	NA	NA
8	HL_6SJ6_009 ➜	1/A/283:288	NA	NA
9	HL_6SJ6_010 ➜	1/A/345:358	NA	NA
10	HL_6SJ6_011 ➜	1/A/362:366	NA	NA
11	HL_6SJ6_012 ➜	1/A/370:378	NA	NA
12	HL_6SJ6_013 ➜	1/A/426:440	NA	NA
13	HL_6SJ6_014 ➜	1/A/456:463	NA	NA
14	HL_6SJ6_015 ➜	1/A/508:513	NA	NA
15	HL_6SJ6_016 ➜	1/A/533:538	NA	NA
16	HL_6SJ6_017 ➜	1/A/587:594	NA	NA
17	HL_6SJ6_018 ➜	1/A/609:618	NA	NA
18	HL_6SJ6_019 ➜	1/A/655:661	NA	NA
19	HL_6SJ6_020 ➜	1/A/674:679	NA	NA
20	HL_6SJ6_022 ➜	1/A/789:798	NA	NA
21	HL_6SJ6_023 ➜	1/A/824:830	NA	NA
22	HL_6SJ6_024 ➜	1/A/871:876	NA	NA
23	HL_6SJ6_026 ➜	1/A/999:1006	NA	NA
24	HL_6SJ6_027 ➜	1/A/1022:1029	NA	NA
25	HL_6SJ6_029 ➜	1/A/1213:1219	NA	NA
26	HL_6SJ6_030 ➜	1/A/1260:1265	NA	NA
27	HL_6SJ6_031 ➜	1/A/1318:1326	NA	NA
28	HL_6SJ6_032 ➜	1/A/1361:1367	NA	NA
29	HL_6SJ6_033 ➜	1/A/1400:1405	NA	NA
30	HL_6SJ6_034 ➜	1/A/1425:1436	NA	NA
31	HL_6SJ6_036 ➜	1/A/1656:1663	NA	NA
32	HL_6SJ6_037 ➜	1/A/1673:1681	NA	NA
33	HL_6SJ6_038 ➜	1/A/1735:1740	NA	NA
34	HL_6SJ6_039 ➜	1/A/1760:1769	NA	NA
35	HL_6SJ6_040 ➜	1/A/1779:1783	NA	NA
36	HL_6SJ6_041 ➜	1/A/1804:1814	NA	NA
37	HL_6SJ6_042 ➜	1/A/1833:1838	NA	NA
38	HL_6SJ6_044 ➜	1/A/1975:1985	NA	NA
39	HL_6SJ6_045 ➜	1/A/2054:2063	NA	NA
40	HL_6SJ6_048 ➜	1/A/2275:2283	NA	NA
41	HL_6SJ6_049 ➜	1/A/2291:2303	NA	NA
42	HL_6SJ6_050 ➜	1/A/2350:2359	NA	NA
43	HL_6SJ6_051 ➜	1/A/2382:2389	NA	NA
44	HL_6SJ6_052 ➜	1/A/2399:2408	NA	NA
45	HL_6SJ6_053 ➜	1/A/2431:2440	NA	NA
46	HL_6SJ6_054 ➜	1/A/2498:2506	NA	NA
47	HL_6SJ6_055 ➜	1/A/2554:2563	NA	NA
48	HL_6SJ6_056 ➜	1/A/2578:2584	NA	NA
49	HL_6SJ6_057 ➜	1/A/2621:2626	NA	NA
50	HL_6SJ6_058 ➜	1/A/2685:2690	NA	NA
51	HL_6SJ6_059 ➜	1/A/2727:2734	NA	NA
52	HL_6SJ6_060 ➜	1/A/2769:2789	NA	NA
53	HL_6SJ6_061 ➜	1/A/2838:2848	NA	NA
54	HL_6SJ6_062 ➜	1/A/2874:2883	NA	NA
55	HL_6SJ6_064 ➜	1/B/83:88	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6SJ6_007 ➜	missing nts	NA
2	HL_6SJ6_021 ➜	missing nts	NA
3	HL_6SJ6_025 ➜	missing nts	NA
4	HL_6SJ6_028 ➜	missing nts	NA
5	HL_6SJ6_035 ➜	missing nts	NA
6	HL_6SJ6_043 ➜	missing nts	NA
7	HL_6SJ6_046 ➜	missing nts	NA
8	HL_6SJ6_047 ➜	missing nts	NA
9	HL_6SJ6_063 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_6SJ6_001 ➜	1/A/24:30,1/A/555:561	NA	NA
2	IL_6SJ6_002 ➜	1/A/36:37,1/A/488:490	NA	NA
3	IL_6SJ6_003 ➜	1/A/42:45,1/A/479:483	NA	NA
4	IL_6SJ6_004 ➜	1/A/80:85,1/A/97:105	NA	NA
5	IL_6SJ6_005 ➜	1/A/152:153,1/A/175:177	NA	NA
6	IL_6SJ6_006 ➜	1/A/186:189,1/A/213:217	NA	NA
7	IL_6SJ6_007 ➜	1/A/241:248,1/A/256:262	NA	NA
8	IL_6SJ6_008 ➜	1/A/334:338,1/A/386:392	NA	NA
9	IL_6SJ6_009 ➜	1/A/527:530,1/A/541:554	NA	NA
10	IL_6SJ6_010 ➜	1/A/581:584,1/A/597:600	NA	NA
11	IL_6SJ6_011 ➜	1/A/607:609,1/A/618:620	NA	NA
12	IL_6SJ6_012 ➜	1/A/638:640,1/A/704:707	NA	NA
13	IL_6SJ6_013 ➜	1/A/649:653,1/A/663:667	NA	NA
14	IL_6SJ6_014 ➜	1/A/717:719,1/A/851:853	NA	NA
15	IL_6SJ6_015 ➜	1/A/719:723,1/A/844:851	NA	NA
16	IL_6SJ6_016 ➜	1/A/742:743,1/A/808:810	NA	NA
17	IL_6SJ6_017 ➜	1/A/746:753,1/A/768:776	NA	NA
18	IL_6SJ6_018 ➜	1/A/783:785,1/A/802:803	NA	NA
19	IL_6SJ6_019 ➜	1/A/820:822,1/A/832:836	NA	NA
20	IL_6SJ6_020 ➜	1/A/882:883,1/A/984:986	NA	NA
21	IL_6SJ6_021 ➜	1/A/888:895,1/A/973:979	NA	NA
22	IL_6SJ6_022 ➜	1/A/897:898,1/A/969:971	NA	NA
23	IL_6SJ6_023 ➜	1/A/901:907,1/A/960:966	NA	NA
24	IL_6SJ6_024 ➜	1/A/907:909,1/A/957:960	NA	NA
25	IL_6SJ6_025 ➜	1/A/909:915,1/A/952:957	NA	NA
26	IL_6SJ6_026 ➜	1/A/1038:1040,1/A/1203:1204	NA	NA
27	IL_6SJ6_027 ➜	1/A/1042:1046,1/A/1197:1201	NA	NA
28	IL_6SJ6_028 ➜	1/A/1048:1055,1/A/1194:1195	NA	NA
29	IL_6SJ6_029 ➜	1/A/1055:1057,1/A/1193:1194	NA	NA
30	IL_6SJ6_030 ➜	1/A/1061:1068,1/A/1184:1189	NA	NA
31	IL_6SJ6_031 ➜	1/A/1068:1074,1/A/1168:1184	NA	NA
32	IL_6SJ6_032 ➜	1/A/1235:1238,1/A/1284:1288	NA	NA
33	IL_6SJ6_033 ➜	1/A/1243:1245,1/A/1277:1279	NA	NA
34	IL_6SJ6_034 ➜	1/A/1246:1253,1/A/1272:1276	NA	NA
35	IL_6SJ6_035 ➜	1/A/1257:1259,1/A/1266:1268	NA	NA
36	IL_6SJ6_036 ➜	1/A/1300:1307,1/A/2038:2044	NA	NA
37	IL_6SJ6_037 ➜	1/A/1347:1350,1/A/1647:1648	NA	NA
38	IL_6SJ6_038 ➜	1/A/1356:1360,1/A/1368:1370	NA	NA
39	IL_6SJ6_039 ➜	1/A/1388:1392,1/A/1413:1417	NA	NA
40	IL_6SJ6_040 ➜	1/A/1393:1398,1/A/1407:1412	NA	NA
41	IL_6SJ6_041 ➜	1/A/1461:1467,1/A/1622:1627	NA	NA
42	IL_6SJ6_042 ➜	1/A/1693:1700,1/A/2031:2035	NA	NA
43	IL_6SJ6_043 ➜	1/A/1707:1709,1/A/2022:2024	NA	NA
44	IL_6SJ6_044 ➜	1/A/1710:1713,1/A/2020:2021	NA	NA
45	IL_6SJ6_045 ➜	1/A/1713:1718,1/A/2017:2020	NA	NA
46	IL_6SJ6_046 ➜	1/A/1730:1735,1/A/1740:1746	NA	NA
47	IL_6SJ6_047 ➜	1/A/1756:1759,1/A/1770:1773	NA	NA
48	IL_6SJ6_048 ➜	1/A/1797:1798,1/A/2007:2009	NA	NA
49	IL_6SJ6_049 ➜	1/A/1825:1831,1/A/1840:1848	NA	NA
50	IL_6SJ6_050 ➜	1/A/1960:1961,1/A/1991:1994	NA	NA
51	IL_6SJ6_051 ➜	1/A/1961:1975,1/A/1985:1991	NA	NA
52	IL_6SJ6_052 ➜	1/A/2077:2079,1/A/2644:2645	NA	NA
53	IL_6SJ6_053 ➜	1/A/2081:2083,1/A/2639:2642	NA	NA
54	IL_6SJ6_054 ➜	1/A/2094:2096,1/A/2469:2470	NA	NA
55	IL_6SJ6_055 ➜	1/A/2097:2099,1/A/2464:2468	NA	NA
56	IL_6SJ6_056 ➜	1/A/2108:2110,1/A/2263:2266	NA	NA
57	IL_6SJ6_057 ➜	1/A/2228:2231,1/A/2247:2249	NA	NA
58	IL_6SJ6_058 ➜	1/A/2319:2350,1/A/2359:2367	NA	NA
59	IL_6SJ6_059 ➜	1/A/2377:2380,1/A/2391:2394	NA	NA
60	IL_6SJ6_060 ➜	1/A/2428:2430,1/A/2441:2442	NA	NA
61	IL_6SJ6_061 ➜	1/A/2480:2481,1/A/2525:2527	NA	NA
62	IL_6SJ6_062 ➜	1/A/2481:2482,1/A/2523:2525	NA	NA
63	IL_6SJ6_063 ➜	1/A/2484:2486,1/A/2520:2521	NA	NA
64	IL_6SJ6_064 ➜	1/A/2486:2488,1/A/2516:2520	NA	NA
65	IL_6SJ6_065 ➜	1/A/2493:2498,1/A/2506:2511	NA	NA
66	IL_6SJ6_066 ➜	1/A/2534:2536,1/A/2606:2609	NA	NA
67	IL_6SJ6_067 ➜	1/A/2537:2539,1/A/2601:2605	NA	NA
68	IL_6SJ6_068 ➜	1/A/2539:2540,1/A/2598:2601	NA	NA
69	IL_6SJ6_069 ➜	1/A/2548:2550,1/A/2567:2571	NA	NA
70	IL_6SJ6_070 ➜	1/A/2618:2619,1/A/2628:2630	NA	NA
71	IL_6SJ6_071 ➜	1/A/2663:2667,1/A/2801:2809	NA	NA
72	IL_6SJ6_072 ➜	1/A/2678:2685,1/A/2690:2696	NA	NA
73	IL_6SJ6_073 ➜	1/A/2707:2711,1/A/2752:2754	NA	NA
74	IL_6SJ6_074 ➜	1/A/2714:2718,1/A/2745:2749	NA	NA
75	IL_6SJ6_075 ➜	1/A/2722:2725,1/A/2736:2741	NA	NA
76	IL_6SJ6_076 ➜	1/A/2764:2769,1/A/2789:2794	NA	NA
77	IL_6SJ6_078 ➜	1/A/2858:2859,1/A/2898:2900	NA	NA
78	IL_6SJ6_079 ➜	1/A/2863:2865,1/A/2891:2894	NA	NA
79	IL_6SJ6_080 ➜	1/A/2867:2874,1/A/2883:2889	NA	NA
80	IL_6SJ6_081 ➜	1/B/21:27,1/B/53:58	NA	NA
81	IL_6SJ6_082 ➜	1/B/28:30,1/B/48:52	NA	NA
82	IL_6SJ6_083 ➜	1/B/77:80,1/B/91:94	NA	NA
83	IL_6SJ6_084 ➜	1/B/80:82,1/B/90:91	NA	NA
84	IL_6SJ6_085 ➜	1/B/82:83,1/B/88:90	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6SJ6_077 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_6SJ6_001 ➜	1/A/30:31,1/A/520:527,1/A/554:555	NA	NA
2	J3_6SJ6_002 ➜	1/A/55:67,1/A/74:76,1/A/109:114	NA	NA
3	J3_6SJ6_003 ➜	1/A/727:734,1/A/818:820,1/A/836:840	NA	NA
4	J3_6SJ6_004 ➜	1/A/743:745,1/A/777:781,1/A/805:808	NA	NA
5	J3_6SJ6_005 ➜	1/A/1335:1340,1/A/1669:1672,1/A/1682:1686	NA	NA
6	J3_6SJ6_006 ➜	1/A/1341:1346,1/A/1649:1655,1/A/1664:1668	NA	NA
7	J3_6SJ6_007 ➜	1/A/1350:1351,1/A/1375:1382,1/A/1645:1647	NA	NA
8	J3_6SJ6_009 ➜	1/A/2118:2123,1/A/2220:2228,1/A/2249:2255	NA	NA
9	J3_6SJ6_010 ➜	1/A/2309:2312,1/A/2410:2423,1/A/2447:2454	NA	NA
10	J3_6SJ6_011 ➜	1/A/2544:2547,1/A/2572:2574,1/A/2588:2594	NA	NA
11	J3_6SJ6_012 ➜	1/A/2831:2835,1/A/2851:2856,1/A/2902:2909	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_6SJ6_008 ➜	incomplete nts	NA

6SJ6 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops