7ASM Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7ASM_001 | 1/A/67:74 | No text annotation Not in a motif group | homologous HL_4WF9_001 HL_86769.3 | |
| HL_7ASM_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_7ASM_003 | 1/A/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_7ASM_004 | 1/A/136:143 | No text annotation Not in a motif group | homologous HL_4WF9_004 HL_84085.2 | |
| HL_7ASM_005 | 1/A/159:169 | No text annotation Not in a motif group | ||
| HL_7ASM_006 | 1/A/197:204 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_7ASM_008 | 1/A/249:255 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_7ASM_010 | 1/A/348:355 | T-loop with 1 bulged base Not in a motif group | homologous HL_4WF9_010 HL_89380.2 | |
| HL_7ASM_011 | 1/A/362:366 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_7ASM_012 | 1/A/370:378 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.9 | |
| HL_7ASM_013 | 1/A/427:439 | No text annotation Not in a motif group | ||
| HL_7ASM_014 | 1/A/456:463 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_7ASM_015 | 1/A/508:513 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.2 | |
| HL_7ASM_016 | 1/A/533:538 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.2 | |
| HL_7ASM_017 | 1/A/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_7ASM_018 | 1/A/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_7ASM_019 | 1/A/655:661 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_7ASM_020 | 1/A/674:679 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.2 | |
| HL_7ASM_023 | 1/A/789:798 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_7ASM_024 | 1/A/824:830 | No text annotation Not in a motif group | homologous HL_4WF9_024 HL_74322.1 | |
| HL_7ASM_025 | 1/A/871:876 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_7ASM_027 | 1/A/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.2 | |
| HL_7ASM_028 | 1/A/1022:1029 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_7ASM_031 | 1/A/1260:1265 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_7ASM_032 | 1/A/1318:1326 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_7ASM_033 | 1/A/1361:1367 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_7ASM_034 | 1/A/1400:1405 | Other HL Not in a motif group | homologous HL_4WF9_034 HL_87030.2 | |
| HL_7ASM_035 | 1/A/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_7ASM_037 | 1/A/1612:1615 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_38927.2 | |
| HL_7ASM_038 | 1/A/1656:1663 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_7ASM_039 | 1/A/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_7ASM_040 | 1/A/1735:1740 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_03562.2 | |
| HL_7ASM_041 | 1/A/1759:1770 | No text annotation Not in a motif group | ||
| HL_7ASM_042 | 1/A/1779:1783 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_7ASM_043 | 1/A/1803:1815 | No text annotation Not in a motif group | ||
| HL_7ASM_044 | 1/A/1833:1838 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.2 | |
| HL_7ASM_047 | 1/A/1976:1984 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_7ASM_048 | 1/A/2054:2063 | No text annotation Not in a motif group | geometric HL_4WF9_047 HL_90642.6 | |
| HL_7ASM_051 | 1/A/2275:2283 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_7ASM_052 | 1/A/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_7ASM_054 | 1/A/2351:2358 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_7ASM_055 | 1/A/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_7ASM_056 | 1/A/2401:2406 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.2 | |
| HL_7ASM_057 | 1/A/2431:2440 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_30784.2 | |
| HL_7ASM_058 | 1/A/2498:2506 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_06192.2 | |
| HL_7ASM_059 | 1/A/2555:2562 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_91104.1 | |
| HL_7ASM_060 | 1/A/2578:2584 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_7ASM_061 | 1/A/2621:2626 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_42097.2 | |
| HL_7ASM_062 | 1/A/2685:2690 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.2 | |
| HL_7ASM_063 | 1/A/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_46680.1 | |
| HL_7ASM_064 | 1/A/2772:2786 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_7ASM_066 | 1/A/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_7ASM_067 | 1/A/2876:2881 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.2 | |
| HL_7ASM_068 | 1/B/36:42 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_7ASM_069 | 1/B/83:88 | No text annotation Not in a motif group | geometric HL_7RQB_007 HL_02862.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7ASM_007 | No text annotation | ||
| HL_7ASM_009 | No text annotation | ||
| HL_7ASM_021 | No text annotation | ||
| HL_7ASM_022 | No text annotation | ||
| HL_7ASM_026 | No text annotation | ||
| HL_7ASM_029 | No text annotation | ||
| HL_7ASM_030 | No text annotation | ||
| HL_7ASM_036 | No text annotation | ||
| HL_7ASM_045 | No text annotation | ||
| HL_7ASM_046 | No text annotation | ||
| HL_7ASM_049 | No text annotation | ||
| HL_7ASM_050 | No text annotation | ||
| HL_7ASM_053 | No text annotation | ||
| HL_7ASM_065 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7ASM_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_4WF9_001 IL_66414.6 | |
| IL_7ASM_002 | 1/A/36:37, 1/A/488:490 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.3 | |
| IL_7ASM_003 | 1/A/42:44, 1/A/480:483 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_7ASM_004 | 1/A/81:85, 1/A/97:104 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_7ASM_005 | 1/A/152:153, 1/A/175:177 | Major groove platform Not in a motif group | geometric IL_4WF9_090 IL_27635.2 | |
| IL_7ASM_006 | 1/A/186:187, 1/A/215:217 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.2 | |
| IL_7ASM_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4WF9_008 IL_35728.2 | |
| IL_7ASM_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_7ASM_009 | 1/A/305:306, 1/A/409:412 | No text annotation Not in a motif group | ||
| IL_7ASM_011 | 1/A/319:327, 1/A/399:400 | No text annotation Not in a motif group | ||
| IL_7ASM_012 | 1/A/336:338, 1/A/386:390 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_7ASM_013 | 1/A/527:530, 1/A/541:554 | No text annotation Not in a motif group | geometric IL_4WF9_015 IL_60992.6 | |
| IL_7ASM_014 | 1/A/581:584, 1/A/597:600 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_7ASM_015 | 1/A/607:609, 1/A/618:620 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_95997.1 | |
| IL_7ASM_016 | 1/A/638:640, 1/A/705:707 | No text annotation Not in a motif group | homologous IL_4WF9_018 IL_51629.2 | |
| IL_7ASM_017 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_7ASM_018 | 1/A/717:719, 1/A/851:853 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_7ASM_019 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_4WF9_021 IL_17470.6 | |
| IL_7ASM_020 | 1/A/742:743, 1/A/808:810 | Single bulged A Not in a motif group | homologous IL_5J7L_261 IL_37497.3 | |
| IL_7ASM_021 | 1/A/747:748, 1/A/773:775 | Single bulged G Not in a motif group | homologous IL_7A0S_017 IL_00225.3 | |
| IL_7ASM_022 | 1/A/748:752, 1/A/769:773 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_7ASM_023 | 1/A/783:785, 1/A/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.2 | |
| IL_7ASM_024 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_7ASM_025 | 1/A/881:883, 1/A/984:987 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_7ASM_026 | 1/A/889:893, 1/A/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_7ASM_027 | 1/A/896:898, 1/A/969:972 | No text annotation Not in a motif group | homologous IL_7A0S_026 IL_51629.2 | |
| IL_7ASM_028 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4WF9_031 IL_93830.3 | |
| IL_7ASM_029 | 1/A/907:908, 1/A/958:960 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_7ASM_030 | 1/A/909:913, 1/A/954:957 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_7ASM_031 | 1/A/920:924, 1/A/943:947 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_7ASM_032 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_7ASM_033 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_89002.2 | |
| IL_7ASM_034 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7A0S_034 IL_15861.7 | |
| IL_7ASM_035 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.14 | |
| IL_7ASM_036 | 1/A/1062:1068, 1/A/1184:1188 | No text annotation Not in a motif group | homologous IL_7RQB_039 IL_57188.3 | |
| IL_7ASM_037 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_7ASM_038 | 1/A/1075:1078, 1/A/1165:1167 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7A0S_038 IL_82068.2 | |
| IL_7ASM_039 | 1/A/1081:1083, 1/A/1160:1162 | No text annotation Not in a motif group | homologous IL_4WF9_042 IL_95997.1 | |
| IL_7ASM_041 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_7ASM_042 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_7ASM_043 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_7ASM_044 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_7ASM_045 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_7ASM_046 | 1/A/1356:1360, 1/A/1368:1370 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_7ASM_047 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN Not in a motif group | homologous IL_7A0S_048 IL_89002.2 | |
| IL_7ASM_048 | 1/A/1394:1398, 1/A/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_7ASM_051 | 1/A/1461:1465, 1/A/1624:1627 | Other IL Not in a motif group | homologous IL_4WF9_054 IL_04059.1 | |
| IL_7ASM_052 | 1/A/1476:1480, 1/A/1604:1608 | No text annotation Not in a motif group | ||
| IL_7ASM_053 | 1/A/1481:1485, 1/A/1598:1603 | No text annotation Not in a motif group | ||
| IL_7ASM_054 | 1/A/1490:1492, 1/A/1506:1508 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_7ASM_058 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_7ASM_059 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn Not in a motif group | homologous IL_7A0S_060 IL_54997.7 | |
| IL_7ASM_060 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_50694.2 | |
| IL_7ASM_061 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH Not in a motif group | homologous IL_4WF9_065 IL_82842.2 | |
| IL_7ASM_062 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7A0S_063 IL_65969.2 | |
| IL_7ASM_063 | 1/A/1757:1759, 1/A/1770:1772 | No text annotation Not in a motif group | ||
| IL_7ASM_064 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A Not in a motif group | homologous IL_5J7L_312 IL_37497.3 | |
| IL_7ASM_065 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_7ASM_066 | 1/A/1864:1867, 1/A/1929:1930 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_7ASM_067 | 1/A/1868:1869, 1/A/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_7ASM_071 | 1/A/1960:1961, 1/A/1991:1994 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_318 IL_59677.2 | |
| IL_7ASM_072 | 1/A/1961:1972, 1/A/1988:1991 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_7ASM_073 | 1/A/2052:2054, 1/A/2063:2065 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_7ASM_074 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform Not in a motif group | homologous IL_4WF9_078 IL_27635.2 | |
| IL_7ASM_075 | 1/A/2081:2083, 1/A/2639:2642 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.5 | |
| IL_7ASM_076 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.14 | |
| IL_7ASM_077 | 1/A/2097:2098, 1/A/2465:2468 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_7ASM_078 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_7ASM_079 | 1/A/2123:2126, 1/A/2217:2220 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.3 | |
| IL_7ASM_082 | 1/A/2229:2231, 1/A/2247:2248 | Single bulged G Not in a motif group | geometric IL_3NDB_004 IL_00225.3 | |
| IL_7ASM_083 | 1/A/2324:2326, 1/A/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_086 IL_38958.7 | |
| IL_7ASM_084 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_7ASM_085 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U Not in a motif group | homologous IL_5J7L_334 IL_83039.14 | |
| IL_7ASM_086 | 1/A/2480:2481, 1/A/2525:2527 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_7ASM_087 | 1/A/2481:2482, 1/A/2523:2525 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.2 | |
| IL_7ASM_088 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_27635.2 | |
| IL_7ASM_089 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_7ASM_090 | 1/A/2493:2497, 1/A/2507:2511 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_7ASM_091 | 1/A/2534:2535, 1/A/2607:2609 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_7ASM_092 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_095 IL_90933.2 | |
| IL_7ASM_093 | 1/A/2539:2540, 1/A/2598:2601 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_7ASM_094 | 1/A/2549:2550, 1/A/2567:2570 | Minor groove platform with intercalation Not in a motif group | homologous IL_4WF9_097 IL_95601.3 | |
| IL_7ASM_095 | 1/A/2618:2619, 1/A/2628:2630 | No text annotation Not in a motif group | ||
| IL_7ASM_096 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_7ASM_097 | 1/A/2667:2669, 1/A/2799:2801 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_7ASM_098 | 1/A/2679:2685, 1/A/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7A0S_094 IL_16458.1 | |
| IL_7ASM_099 | 1/A/2707:2711, 1/A/2752:2754 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_7ASM_100 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_7ASM_101 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_7ASM_102 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW Not in a motif group | homologous IL_4WF9_104 IL_49767.5 | |
| IL_7ASM_103 | 1/A/2857:2859, 1/A/2898:2901 | No text annotation Not in a motif group | ||
| IL_7ASM_104 | 1/A/2862:2865, 1/A/2891:2895 | No text annotation Not in a motif group | ||
| IL_7ASM_105 | 1/A/2867:2872, 1/A/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_7ASM_106 | 1/B/15:16, 1/B/63:65 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.3 | |
| IL_7ASM_107 | 1/B/21:27, 1/B/53:58 | No text annotation Not in a motif group | ||
| IL_7ASM_108 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.6 | |
| IL_7ASM_109 | 1/B/31:36, 1/B/42:47 | No text annotation Not in a motif group | homologous IL_7A0S_105 IL_93630.2 | |
| IL_7ASM_110 | 1/B/69:77, 1/B/94:102 | Bacterial 5S Loop E Not in a motif group | homologous IL_7A0S_106 IL_56455.3 | |
| IL_7ASM_111 | 1/B/78:80, 1/B/91:93 | No text annotation Not in a motif group | homologous IL_7A0S_107 IL_51629.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7ASM_010 | No text annotation | ||
| IL_7ASM_040 | Kink-turn | ||
| IL_7ASM_049 | No text annotation | ||
| IL_7ASM_050 | No text annotation | ||
| IL_7ASM_055 | No text annotation | ||
| IL_7ASM_056 | No text annotation | ||
| IL_7ASM_057 | No text annotation | ||
| IL_7ASM_068 | No text annotation | ||
| IL_7ASM_069 | UAA/GAN with extra pair | ||
| IL_7ASM_070 | Triple sheared | ||
| IL_7ASM_080 | No text annotation | ||
| IL_7ASM_081 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7ASM_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation Not in a motif group | homologous J3_5J7L_036 NA | |
| J3_7ASM_002 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation Not in a motif group | ||
| J3_7ASM_003 | 1/A/272:276, 1/A/295:302, 1/A/415:416 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_7ASM_004 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation Not in a motif group | ||
| J3_7ASM_005 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation Not in a motif group | ||
| J3_7ASM_006 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_7ASM_007 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_7ASM_008 | 1/A/1485:1490, 1/A/1508:1511, 1/A/1570:1598 | No text annotation Not in a motif group | ||
| J3_7ASM_009 | 1/A/2118:2120, 1/A/2223:2229, 1/A/2248:2255 | No text annotation Not in a motif group | ||
| J3_7ASM_010 | 1/A/2309:2311, 1/A/2411:2423, 1/A/2447:2454 | No text annotation Not in a motif group | ||
| J3_7ASM_011 | 1/A/2322:2324, 1/A/2348:2350, 1/A/2359:2364 | No text annotation Not in a motif group | ||
| J3_7ASM_012 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation Not in a motif group | homologous J3_4WF9_009 NA | |
| J3_7ASM_013 | 1/A/2834:2835, 1/A/2851:2856, 1/A/2902:2906 | No text annotation Not in a motif group | homologous J3_7A0S_013 NA | |
| J3_7ASM_014 | 1/B/9:14, 1/B/66:68, 1/B/103:106 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: