4V6N Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6N_001 | 1/AA/34:48 | No text annotation Not in a motif group | ||
| HL_4V6N_002 | 1/AA/85:91 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.2 | |
| HL_4V6N_003 | 1/AB/59:68 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.1 | |
| HL_4V6N_004 | 1/AB/86:96 | No text annotation Not in a motif group | ||
| HL_4V6N_005 | 1/AB/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4V6N_006 | 1/AB/137:142 | No text annotation Not in a motif group | geometric HL_6CK5_001 HL_03562.2 | |
| HL_4V6N_007 | 1/AB/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_4V6N_008 | 1/AB/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_06192.2 | |
| HL_4V6N_009 | 1/AB/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_27930.1 | |
| HL_4V6N_010 | 1/AB/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4V6N_011 | 1/AB/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_4V6N_012 | 1/AB/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_75407.1 | |
| HL_4V6N_013 | 1/AB/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_4V6N_014 | 1/AB/381:393 | No text annotation Not in a motif group | ||
| HL_4V6N_015 | 1/AB/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4V6N_016 | 1/AB/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4V6N_017 | 1/AB/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_42097.1 | |
| HL_4V6N_018 | 1/AB/543:550 | No text annotation Not in a motif group | ||
| HL_4V6N_019 | 1/AB/566:575 | No text annotation Not in a motif group | ||
| HL_4V6N_020 | 1/AB/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.2 | |
| HL_4V6N_021 | 1/AB/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_4V6N_022 | 1/AB/640:648 | No text annotation Not in a motif group | ||
| HL_4V6N_023 | 1/AB/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_84085.2 | |
| HL_4V6N_024 | 1/AB/744:753 | No text annotation Not in a motif group | homologous HL_5J7L_155 NA | |
| HL_4V6N_025 | 1/AB/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_74322.1 | |
| HL_4V6N_026 | 1/AB/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_4V6N_027 | 1/AB/885:891 | No text annotation Not in a motif group | ||
| HL_4V6N_028 | 1/AB/954:963 | No text annotation Not in a motif group | homologous HL_5J7L_159 NA | |
| HL_4V6N_029 | 1/AB/978:985 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_4V6N_030 | 1/AB/1064:1074 | No text annotation Not in a motif group | homologous HL_6PRV_001 HL_07145.1 | |
| HL_4V6N_031 | 1/AB/1092:1099 | No text annotation Not in a motif group | geometric HL_5TBW_012 HL_86373.2 | |
| HL_4V6N_032 | 1/AB/1172:1177 | No text annotation Not in a motif group | ||
| HL_4V6N_033 | 1/AB/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.2 | |
| HL_4V6N_034 | 1/AB/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_89380.2 | |
| HL_4V6N_035 | 1/AB/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_4V6N_036 | 1/AB/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4V6N_037 | 1/AB/1389:1398 | No text annotation Not in a motif group | ||
| HL_4V6N_038 | 1/AB/1450:1461 | No text annotation Not in a motif group | ||
| HL_4V6N_039 | 1/AB/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.1 | |
| HL_4V6N_040 | 1/AB/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_03562.2 | |
| HL_4V6N_041 | 1/AB/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_38927.2 | |
| HL_4V6N_042 | 1/AB/1612:1619 | No text annotation Not in a motif group | ||
| HL_4V6N_043 | 1/AB/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_42097.1 | |
| HL_4V6N_044 | 1/AB/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_4V6N_045 | 1/AB/1728:1731 | No text annotation Not in a motif group | ||
| HL_4V6N_046 | 1/AB/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_76539.2 | |
| HL_4V6N_047 | 1/AB/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4V6N_048 | 1/AB/1806:1811 | No text annotation Not in a motif group | homologous HL_4WF9_044 NA | |
| HL_4V6N_049 | 1/AB/1868:1873 | GNRA Not in a motif group | geometric HL_5J7L_019 HL_42097.1 | |
| HL_4V6N_050 | 1/AB/1910:1920 | No text annotation Not in a motif group | homologous HL_5J7L_181 NA | |
| HL_4V6N_051 | 1/AB/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4V6N_052 | 1/AB/2027:2036 | No text annotation Not in a motif group | ||
| HL_4V6N_053 | 1/AB/2142:2149 | No text annotation Not in a motif group | ||
| HL_4V6N_054 | 1/AB/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.6 | |
| HL_4V6N_055 | 1/AB/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4V6N_056 | 1/AB/2303:2313 | No text annotation Not in a motif group | ||
| HL_4V6N_057 | 1/AB/2323:2332 | No text annotation Not in a motif group | ||
| HL_4V6N_058 | 1/AB/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.2 | |
| HL_4V6N_059 | 1/AB/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_4V6N_060 | 1/AB/2404:2413 | No text annotation Not in a motif group | ||
| HL_4V6N_061 | 1/AB/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.2 | |
| HL_4V6N_062 | 1/AB/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4V6N_063 | 1/AB/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4V6N_064 | 1/AB/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4V6N_065 | 1/AB/2658:2663 | GNRA Not in a motif group | geometric HL_3SUX_002 HL_42097.1 | |
| HL_4V6N_066 | 1/AB/2700:2707 | No text annotation Not in a motif group | geometric HL_3R4F_002 HL_35015.1 | |
| HL_4V6N_067 | 1/AB/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_4V6N_068 | 1/AB/2796:2800 | No text annotation Not in a motif group | geometric HL_7RQB_009 HL_89098.1 | |
| HL_4V6N_069 | 1/AB/2817:2829 | No text annotation Not in a motif group | ||
| HL_4V6N_070 | 1/AB/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_42097.1 | |
| HL_4V6N_071 | 1/BA/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_4V6N_073 | 1/BA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_4V6N_074 | 1/BA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_4V6N_076 | 1/BA/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_4V6N_077 | 1/BA/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_4V6N_078 | 1/BA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V6N_079 | 1/BA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4V6N_080 | 1/BA/379:384 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4V6N_081 | 1/BA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_4V6N_083 | 1/BA/521:528 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4V6N_084 | 1/BA/617:623 | No text annotation Not in a motif group | homologous HL_6CZR_085 HL_26881.1 | |
| HL_4V6N_085 | 1/BA/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_4V6N_086 | 1/BA/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_4V6N_087 | 1/BA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4V6N_089 | 1/BA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4V6N_090 | 1/BA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4V6N_091 | 1/BA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V6N_092 | 1/BA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4V6N_093 | 1/BA/1028:1033 | UNCG Not in a motif group | geometric HL_1I6U_001 HL_03562.2 | |
| HL_4V6N_094 | 1/BA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_4V6N_095 | 1/BA/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_4V6N_096 | 1/BA/1134:1140 | No text annotation Not in a motif group | homologous HL_5J7L_025 HL_03562.2 | |
| HL_4V6N_098 | 1/BA/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_4V6N_099 | 1/BA/1314:1323 | No text annotation Not in a motif group | ||
| HL_4V6N_100 | 1/BA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V6N_101 | 1/BA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_4V6N_102 | 1/BA/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_4V6N_103 | 1/BB/13:22 | No text annotation Not in a motif group | homologous HL_2AKE_001 NA | |
| HL_4V6N_104 | 1/BB/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V9Q_214 HL_53597.2 | |
| HL_4V6N_105 | 1/BB/51:63 | No text annotation Not in a motif group | ||
| HL_4V6N_106 | 1/BD/13:23 | No text annotation Not in a motif group | homologous HL_4LCK_001 NA | |
| HL_4V6N_107 | 1/BD/29:43 | No text annotation Not in a motif group | homologous HL_6GSL_221 HL_06285.2 | |
| HL_4V6N_108 | 1/BD/54:62 | No text annotation Not in a motif group | homologous HL_1B23_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6N_072 | No text annotation | ||
| HL_4V6N_075 | No text annotation | ||
| HL_4V6N_082 | No text annotation | ||
| HL_4V6N_088 | No text annotation | ||
| HL_4V6N_097 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6N_001 | 1/AA/17:18, 1/AA/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_4V6N_002 | 1/AA/23:28, 1/AA/56:60 | No text annotation Not in a motif group | homologous IL_7A0S_103 IL_18472.2 | |
| IL_4V6N_003 | 1/AA/30:31, 1/AA/51:54 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
| IL_4V6N_004 | 1/AA/71:79, 1/AA/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4V6N_005 | 1/AB/24:30, 1/AB/510:516 | No text annotation Not in a motif group | ||
| IL_4V6N_006 | 1/AB/36:37, 1/AB/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.2 | |
| IL_4V6N_007 | 1/AB/43:44, 1/AB/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_42622.2 | |
| IL_4V6N_008 | 1/AB/80:85, 1/AB/97:106 | No text annotation Not in a motif group | ||
| IL_4V6N_009 | 1/AB/183:184, 1/AB/212:214 | No text annotation Not in a motif group | ||
| IL_4V6N_010 | 1/AB/188:194, 1/AB/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.7 | |
| IL_4V6N_011 | 1/AB/239:245, 1/AB/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_4V6N_012 | 1/AB/269:271, 1/AB/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4V6N_013 | 1/AB/274:281, 1/AB/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V6N_014 | 1/AB/290:292, 1/AB/348:350 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_4V6N_015 | 1/AB/292:295, 1/AB/343:348 | No text annotation Not in a motif group | ||
| IL_4V6N_016 | 1/AB/481:484, 1/AB/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_4V6N_017 | 1/AB/536:539, 1/AB/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_4V6N_018 | 1/AB/564:566, 1/AB/575:577 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_4V6N_019 | 1/AB/606:610, 1/AB/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_17136.1 | |
| IL_4V6N_020 | 1/AB/671:674, 1/AB/806:809 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_4V6N_021 | 1/AB/674:678, 1/AB/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_5J7L_260 IL_17470.6 | |
| IL_4V6N_022 | 1/AB/697:698, 1/AB/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_37497.2 | |
| IL_4V6N_023 | 1/AB/702:707, 1/AB/724:730 | Quadruple sheared Not in a motif group | geometric IL_3FTF_001 IL_06136.1 | |
| IL_4V6N_024 | 1/AB/738:740, 1/AB/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.1 | |
| IL_4V6N_025 | 1/AB/775:777, 1/AB/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_4V6N_026 | 1/AB/843:845, 1/AB/934:935 | Single stack bend Not in a motif group | geometric IL_5J7L_249 IL_76488.2 | |
| IL_4V6N_027 | 1/AB/845:848, 1/AB/930:934 | No text annotation Not in a motif group | ||
| IL_4V6N_028 | 1/AB/850:851, 1/AB/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_76488.2 | |
| IL_4V6N_029 | 1/AB/856:862, 1/AB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5J7L_270 IL_93830.3 | |
| IL_4V6N_030 | 1/AB/862:863, 1/AB/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_42622.2 | |
| IL_4V6N_031 | 1/AB/864:868, 1/AB/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.6 | |
| IL_4V6N_032 | 1/AB/870:872, 1/AB/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_95997.1 | |
| IL_4V6N_033 | 1/AB/875:879, 1/AB/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4V6N_034 | 1/AB/880:881, 1/AB/895:897 | No text annotation Not in a motif group | ||
| IL_4V6N_035 | 1/AB/881:884, 1/AB/892:895 | No text annotation Not in a motif group | ||
| IL_4V6N_036 | 1/AB/994:996, 1/AB/1159:1160 | Single bulged C Not in a motif group | homologous IL_7A0S_032 IL_61258.12 | |
| IL_4V6N_037 | 1/AB/998:1002, 1/AB/1153:1157 | UAA/GAN Not in a motif group | geometric IL_5J7L_277 IL_89002.2 | |
| IL_4V6N_038 | 1/AB/1002:1011, 1/AB/1150:1153 | No text annotation Not in a motif group | ||
| IL_4V6N_039 | 1/AB/1011:1013, 1/AB/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_4V6N_040 | 1/AB/1018:1030, 1/AB/1124:1144 | No text annotation Not in a motif group | ||
| IL_4V6N_041 | 1/AB/1031:1034, 1/AB/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_4V6N_042 | 1/AB/1038:1041, 1/AB/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.2 | |
| IL_4V6N_043 | 1/AB/1043:1051, 1/AB/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_4V6N_044 | 1/AB/1059:1062, 1/AB/1076:1079 | No text annotation Not in a motif group | homologous IL_6PRV_001 IL_23544.2 | |
| IL_4V6N_045 | 1/AB/1087:1090, 1/AB/1101:1102 | No text annotation Not in a motif group | homologous IL_6PRV_002 NA | |
| IL_4V6N_046 | 1/AB/1196:1199, 1/AB/1246:1250 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_002 IL_30621.2 | |
| IL_4V6N_047 | 1/AB/1202:1208, 1/AB/1238:1243 | No text annotation Not in a motif group | ||
| IL_4V6N_048 | 1/AB/1208:1215, 1/AB/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4V6N_049 | 1/AB/1262:1269, 1/AB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.7 | |
| IL_4V6N_050 | 1/AB/1310:1313, 1/AB/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_4V6N_051 | 1/AB/1319:1324, 1/AB/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V6N_052 | 1/AB/1351:1355, 1/AB/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.2 | |
| IL_4V6N_053 | 1/AB/1357:1361, 1/AB/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_17136.1 | |
| IL_4V6N_054 | 1/AB/1414:1416, 1/AB/1582:1588 | No text annotation Not in a motif group | ||
| IL_4V6N_055 | 1/AB/1417:1421, 1/AB/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.2 | |
| IL_4V6N_056 | 1/AB/1432:1435, 1/AB/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_4V6N_057 | 1/AB/1437:1440, 1/AB/1551:1555 | No text annotation Not in a motif group | ||
| IL_4V6N_058 | 1/AB/1468:1471, 1/AB/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_4V6N_059 | 1/AB/1473:1478, 1/AB/1513:1518 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7A0S_027 IL_81631.1 | |
| IL_4V6N_060 | 1/AB/1481:1482, 1/AB/1507:1510 | No text annotation Not in a motif group | ||
| IL_4V6N_061 | 1/AB/1489:1491, 1/AB/1499:1500 | Single bulged A Not in a motif group | geometric IL_4V9F_032 IL_37497.2 | |
| IL_4V6N_062 | 1/AB/1526:1529, 1/AB/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_07235.1 | |
| IL_4V6N_063 | 1/AB/1651:1656, 1/AB/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4V6N_064 | 1/AB/1663:1665, 1/AB/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_4V6N_065 | 1/AB/1666:1669, 1/AB/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_4V6N_066 | 1/AB/1669:1674, 1/AB/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_82842.2 | |
| IL_4V6N_067 | 1/AB/1686:1691, 1/AB/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5TBW_078 IL_65969.2 | |
| IL_4V6N_068 | 1/AB/1712:1718, 1/AB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4V6N_069 | 1/AB/1720:1725, 1/AB/1735:1740 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7A0S_018 IL_86929.2 | |
| IL_4V6N_070 | 1/AB/1727:1728, 1/AB/1731:1733 | Single bulged C Not in a motif group | geometric IL_5J7L_311 IL_61258.12 | |
| IL_4V6N_071 | 1/AB/1770:1771, 1/AB/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_37497.2 | |
| IL_4V6N_072 | 1/AB/1798:1804, 1/AB/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_4V6N_073 | 1/AB/1837:1840, 1/AB/1902:1903 | No text annotation Not in a motif group | ||
| IL_4V6N_074 | 1/AB/1841:1842, 1/AB/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_69996.1 | |
| IL_4V6N_075 | 1/AB/1864:1867, 1/AB/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.1 | |
| IL_4V6N_076 | 1/AB/1933:1934, 1/AB/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_6IV9_001 IL_16396.2 | |
| IL_4V6N_077 | 1/AB/1934:1945, 1/AB/1961:1964 | No text annotation Not in a motif group | ||
| IL_4V6N_078 | 1/AB/2050:2052, 1/AB/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.1 | |
| IL_4V6N_079 | 1/AB/2054:2056, 1/AB/2612:2615 | No text annotation Not in a motif group | ||
| IL_4V6N_080 | 1/AB/2064:2066, 1/AB/2444:2446 | No text annotation Not in a motif group | homologous IL_5J7L_322 NA | |
| IL_4V6N_081 | 1/AB/2067:2071, 1/AB/2438:2443 | No text annotation Not in a motif group | ||
| IL_4V6N_082 | 1/AB/2081:2083, 1/AB/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.7 | |
| IL_4V6N_083 | 1/AB/2084:2087, 1/AB/2232:2235 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_110 IL_67743.1 | |
| IL_4V6N_084 | 1/AB/2103:2105, 1/AB/2184:2186 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_95997.1 | |
| IL_4V6N_085 | 1/AB/2106:2120, 1/AB/2177:2183 | No text annotation Not in a motif group | ||
| IL_4V6N_086 | 1/AB/2120:2123, 1/AB/2175:2177 | Other IL Not in a motif group | geometric IL_5TBW_064 IL_84698.1 | |
| IL_4V6N_087 | 1/AB/2123:2128, 1/AB/2160:2175 | No text annotation Not in a motif group | ||
| IL_4V6N_088 | 1/AB/2128:2136, 1/AB/2155:2160 | No text annotation Not in a motif group | ||
| IL_4V6N_089 | 1/AB/2202:2204, 1/AB/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.13 | |
| IL_4V6N_090 | 1/AB/2350:2353, 1/AB/2364:2367 | Double sheared Not in a motif group | homologous IL_4WF9_087 IL_09705.9 | |
| IL_4V6N_091 | 1/AB/2401:2403, 1/AB/2414:2415 | No text annotation Not in a motif group | ||
| IL_4V6N_092 | 1/AB/2456:2459, 1/AB/2493:2495 | No text annotation Not in a motif group | homologous IL_5J7L_336 NA | |
| IL_4V6N_093 | 1/AB/2459:2461, 1/AB/2489:2493 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_4V6N_094 | 1/AB/2466:2470, 1/AB/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.8 | |
| IL_4V6N_095 | 1/AB/2507:2509, 1/AB/2579:2582 | No text annotation Not in a motif group | homologous IL_5J7L_339 NA | |
| IL_4V6N_096 | 1/AB/2510:2512, 1/AB/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_4V6N_097 | 1/AB/2512:2513, 1/AB/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.2 | |
| IL_4V6N_098 | 1/AB/2521:2523, 1/AB/2540:2544 | No text annotation Not in a motif group | ||
| IL_4V6N_099 | 1/AB/2588:2590, 1/AB/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_4V6N_100 | 1/AB/2591:2592, 1/AB/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4V6N_101 | 1/AB/2636:2640, 1/AB/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_4V6N_102 | 1/AB/2652:2658, 1/AB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_4V6N_103 | 1/AB/2680:2684, 1/AB/2725:2727 | C-loop Not in a motif group | homologous IL_7A0S_095 IL_63596.6 | |
| IL_4V6N_104 | 1/AB/2687:2691, 1/AB/2718:2722 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_4V6N_105 | 1/AB/2695:2696, 1/AB/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_4WF9_103 IL_71530.2 | |
| IL_4V6N_106 | 1/AB/2737:2742, 1/AB/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4V6N_107 | 1/AB/2806:2811, 1/AB/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_49460.2 | |
| IL_4V6N_108 | 1/AB/2838:2839, 1/AB/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4V6N_109 | 1/AB/2843:2846, 1/AB/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4V6N_110 | 1/AB/2847:2853, 1/AB/2864:2869 | No text annotation Not in a motif group | ||
| IL_4V6N_111 | 1/BA/30:33, 1/BA/551:553 | No text annotation Not in a motif group | geometric IL_4V88_472 IL_95997.1 | |
| IL_4V6N_112 | 1/BA/44:45, 1/BA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4V6N_113 | 1/BA/47:52, 1/BA/359:361 | No text annotation Not in a motif group | homologous IL_6CZR_115 IL_11178.1 | |
| IL_4V6N_114 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4V6N_115 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_117 IL_76389.1 | |
| IL_4V6N_116 | 1/BA/67:69, 1/BA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_4V6N_118 | 1/BA/75:77, 1/BA/92:95 | Single bulged G, near cWW Not in a motif group | homologous IL_5J7L_008 IL_82068.2 | |
| IL_4V6N_119 | 1/BA/127:131, 1/BA/231:234 | No text annotation Not in a motif group | ||
| IL_4V6N_120 | 1/BA/132:136, 1/BA/227:230 | No text annotation Not in a motif group | ||
| IL_4V6N_121 | 1/BA/136:139, 1/BA/224:227 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_4V6N_122 | 1/BA/144:146, 1/BA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_4V6N_123 | 1/BA/147:153, 1/BA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_4V6N_125 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_4V6N_126 | 1/BA/249:252, 1/BA/274:275 | No text annotation Not in a motif group | ||
| IL_4V6N_127 | 1/BA/292:293, 1/BA/304:308 | No text annotation Not in a motif group | ||
| IL_4V6N_128 | 1/BA/367:369, 1/BA/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.13 | |
| IL_4V6N_129 | 1/BA/371:376, 1/BA/387:390 | No text annotation Not in a motif group | ||
| IL_4V6N_130 | 1/BA/408:416, 1/BA/427:434 | No text annotation Not in a motif group | ||
| IL_4V6N_132 | 1/BA/446:449, 1/BA/486:488 | No text annotation Not in a motif group | ||
| IL_4V6N_133 | 1/BA/449:450, 1/BA/483:486 | No text annotation Not in a motif group | ||
| IL_4V6N_134 | 1/BA/450:455, 1/BA/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_4V6N_135 | 1/BA/456:460, 1/BA/471:476 | No text annotation Not in a motif group | ||
| IL_4V6N_136 | 1/BA/460:462, 1/BA/470:471 | Single stack bend Not in a motif group | geometric IL_7KGA_006 IL_76488.2 | |
| IL_4V6N_137 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_4V6N_138 | 1/BA/515:521, 1/BA/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_4V6N_139 | 1/BA/569:575, 1/BA/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_4V6N_140 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_4V6N_141 | 1/BA/594:596, 1/BA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_4V6N_142 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4V6N_143 | 1/BA/604:612, 1/BA/628:634 | No text annotation Not in a motif group | ||
| IL_4V6N_144 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_5J7L_031 IL_50694.2 | |
| IL_4V6N_145 | 1/BA/659:660, 1/BA/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_4V6N_146 | 1/BA/661:666, 1/BA/740:744 | No text annotation Not in a motif group | ||
| IL_4V6N_147 | 1/BA/673:678, 1/BA/712:717 | No text annotation Not in a motif group | geometric IL_6CZR_142 IL_04668.1 | |
| IL_4V6N_148 | 1/BA/684:688, 1/BA/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_4V6N_149 | 1/BA/774:778, 1/BA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4V6N_150 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_145 IL_17136.1 | |
| IL_4V6N_151 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V6N_152 | 1/BA/922:924, 1/BA/1392:1395 | No text annotation Not in a motif group | geometric IL_5D0B_001 IL_95997.1 | |
| IL_4V6N_153 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_4V6N_154 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_4V6N_155 | 1/BA/953:954, 1/BA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4V6N_156 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_4V6N_157 | 1/BA/998:999, 1/BA/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_4V6N_158 | 1/BA/1048:1056, 1/BA/1204:1209 | No text annotation Not in a motif group | ||
| IL_4V6N_159 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_4V6N_160 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U Not in a motif group | homologous IL_6CZR_156 IL_83039.13 | |
| IL_4V6N_161 | 1/BA/1061:1063, 1/BA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_4V6N_162 | 1/BA/1124:1128, 1/BA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_4V6N_163 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4V6N_164 | 1/BA/1158:1161, 1/BA/1175:1181 | No text annotation Not in a motif group | ||
| IL_4V6N_165 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4V6N_166 | 1/BA/1255:1258, 1/BA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4V6N_167 | 1/BA/1259:1263, 1/BA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_4V6N_168 | 1/BA/1303:1308, 1/BA/1329:1334 | Quadruple sheared Not in a motif group | geometric IL_5LR3_002 IL_06136.1 | |
| IL_4V6N_169 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_4V6N_170 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_4V6N_171 | 1/BA/1405:1409, 1/BA/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
| IL_4V6N_172 | 1/BA/1412:1415, 1/BA/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_4V6N_173 | 1/BA/1416:1421, 1/BA/1479:1484 | No text annotation Not in a motif group | ||
| IL_4V6N_174 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6N_117 | Minor groove platform | ||
| IL_4V6N_124 | No text annotation | ||
| IL_4V6N_131 | No text annotation | ||
| IL_4V6N_175 | No text annotation | ||
| IL_4V6N_176 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6N_001 | 1/AA/10:16, 1/AA/68:70, 1/AA/106:110 | No text annotation Not in a motif group | ||
| J3_4V6N_002 | 1/AB/30:31, 1/AB/474:481, 1/AB/509:510 | No text annotation Not in a motif group | ||
| J3_4V6N_003 | 1/AB/55:58, 1/AB/69:76, 1/AB/110:115 | No text annotation Not in a motif group | ||
| J3_4V6N_004 | 1/AB/683:689, 1/AB/773:775, 1/AB/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_4V6N_005 | 1/AB/698:700, 1/AB/732:736, 1/AB/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4V6N_006 | 1/AB/1055:1057, 1/AB/1081:1087, 1/AB/1102:1104 | No text annotation Not in a motif group | ||
| J3_4V6N_007 | 1/AB/1298:1303, 1/AB/1625:1627, 1/AB/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_4V6N_008 | 1/AB/1306:1309, 1/AB/1605:1611, 1/AB/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_4V6N_009 | 1/AB/1344:1350, 1/AB/1381:1385, 1/AB/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_4V6N_010 | 1/AB/2091:2093, 1/AB/2196:2200, 1/AB/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_4V6N_011 | 1/AB/2295:2299, 1/AB/2317:2323, 1/AB/2332:2337 | No text annotation Not in a motif group | ||
| J3_4V6N_012 | 1/AB/2517:2521, 1/AB/2544:2547, 1/AB/2561:2567 | No text annotation Not in a motif group | ||
| J3_4V6N_013 | 1/AB/2789:2791, 1/AB/2805:2806, 1/AB/2892:2894 | No text annotation Not in a motif group | ||
| J3_4V6N_014 | 1/AB/2812:2816, 1/AB/2830:2836, 1/AB/2882:2888 | No text annotation Not in a motif group | ||
| J3_4V6N_015 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation Not in a motif group | ||
| J3_4V6N_016 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_4V6N_017 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_4V6N_018 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4V6N_019 | 1/BA/941:946, 1/BA/1235:1237, 1/BA/1337:1342 | No text annotation Not in a motif group | ||
| J3_4V6N_020 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V6N_021 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4V6N_022 | 1/BA/1003:1006, 1/BA/1023:1027, 1/BA/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V6N_023 | 1/BA/1063:1068, 1/BA/1107:1114, 1/BA/1186:1193 | No text annotation Not in a motif group | ||
| J3_4V6N_024 | 1/BA/1073:1074, 1/BA/1083:1087, 1/BA/1098:1102 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_4V6N_025 | 1/BA/1116:1120, 1/BA/1153:1158, 1/BA/1181:1184 | No text annotation Not in a motif group | ||
| J3_4V6N_026 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA |
Problematic loops
No problematic loops
Coloring options: