4V6N Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V6N_001 | 1/AA/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V6N_002 | 1/AA/85:91 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_4V6N_003 | 1/AB/59:68 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_93438.2 | |
| HL_4V6N_004 | 1/AB/86:96 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4V6N_005 | 1/AB/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_4V6N_006 | 1/AB/137:142 | UNCG | geometric HL_6CK5_001 HL_34617.5 | |
| HL_4V6N_007 | 1/AB/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4V6N_008 | 1/AB/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_4V6N_009 | 1/AB/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_4V6N_010 | 1/AB/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V6N_011 | 1/AB/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_4V6N_012 | 1/AB/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4V6N_013 | 1/AB/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4V6N_116 | 1/AB/382:392 | No text annotation | ||
| HL_4V6N_015 | 1/AB/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V6N_016 | 1/AB/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V6N_017 | 1/AB/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_4V6N_018 | 1/AB/543:550 | No text annotation | ||
| HL_4V6N_019 | 1/AB/566:575 | No text annotation | ||
| HL_4V6N_020 | 1/AB/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_4V6N_021 | 1/AB/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_4V6N_117 | 1/AB/641:647 | No text annotation | ||
| HL_4V6N_023 | 1/AB/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4V6N_024 | 1/AB/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
| HL_4V6N_025 | 1/AB/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_4V6N_026 | 1/AB/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_4V6N_027 | 1/AB/885:891 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_4V6N_110 | 1/AB/955:962 | GNRA | homologous HL_5J7L_211 HL_37824.7 | |
| HL_4V6N_029 | 1/AB/978:985 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_4V6N_030 | 1/AB/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
| HL_4V6N_031 | 1/AB/1092:1099 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_4V6N_032 | 1/AB/1172:1177 | No text annotation | ||
| HL_4V6N_033 | 1/AB/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_4V6N_034 | 1/AB/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_4V6N_035 | 1/AB/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_57176.2 | |
| HL_4V6N_036 | 1/AB/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_4V6N_037 | 1/AB/1389:1398 | No text annotation | homologous HL_7A0S_035 HL_81545.2 | |
| HL_4V6N_038 | 1/AB/1450:1461 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4V6N_039 | 1/AB/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4V6N_040 | 1/AB/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_4V6N_041 | 1/AB/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V6N_042 | 1/AB/1612:1619 | No text annotation | homologous HL_9DFE_038 HL_89567.2 | |
| HL_4V6N_043 | 1/AB/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_4V6N_044 | 1/AB/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_4V6N_045 | 1/AB/1728:1731 | No text annotation | ||
| HL_4V6N_046 | 1/AB/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_4V6N_047 | 1/AB/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4V6N_048 | 1/AB/1806:1811 | No text annotation | homologous HL_4WF9_044 NA | |
| HL_4V6N_049 | 1/AB/1868:1873 | GNRA | geometric HL_5J7L_019 HL_37824.7 | |
| HL_4V6N_050 | 1/AB/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_4V6N_051 | 1/AB/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V6N_052 | 1/AB/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_4V6N_053 | 1/AB/2142:2149 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_4V6N_054 | 1/AB/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4V6N_055 | 1/AB/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V6N_056 | 1/AB/2303:2313 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_4V6N_118 | 1/AB/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_4V6N_058 | 1/AB/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_4V6N_059 | 1/AB/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
| HL_4V6N_060 | 1/AB/2404:2413 | No text annotation | homologous HL_9DFE_057 HL_53454.2 | |
| HL_4V6N_061 | 1/AB/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
| HL_4V6N_062 | 1/AB/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V6N_063 | 1/AB/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V6N_064 | 1/AB/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V6N_065 | 1/AB/2658:2663 | GNRA | geometric HL_3SUX_002 HL_37824.7 | |
| HL_4V6N_119 | 1/AB/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
| HL_4V6N_067 | 1/AB/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_4V6N_068 | 1/AB/2796:2800 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_4V6N_120 | 1/AB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4V6N_070 | 1/AB/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_4V6N_071 | 1/BA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4V6N_113 | 1/BA/81:88 | No text annotation | homologous HL_6CZR_073 NA | |
| HL_4V6N_072 | 1/BA/82:87 | No text annotation | ||
| HL_4V6N_073 | 1/BA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_4V6N_074 | 1/BA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_4V6N_075 | 1/BA/207:212 | No text annotation | geometric HL_5J7L_025 HL_87954.2 | |
| HL_4V6N_076 | 1/BA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4V6N_077 | 1/BA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_4V6N_078 | 1/BA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V6N_079 | 1/BA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_4V6N_080 | 1/BA/379:384 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4V6N_081 | 1/BA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4V6N_082 | 1/BA/462:470 | No text annotation | ||
| HL_4V6N_121 | 1/BA/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_4V6N_084 | 1/BA/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
| HL_4V6N_085 | 1/BA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4V6N_086 | 1/BA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4V6N_087 | 1/BA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V6N_088 | 1/BA/840:846 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_4V6N_089 | 1/BA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4V6N_090 | 1/BA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4V6N_091 | 1/BA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V6N_092 | 1/BA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V6N_093 | 1/BA/1028:1033 | UNCG | geometric HL_1I6U_001 HL_34617.5 | |
| HL_4V6N_094 | 1/BA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4V6N_095 | 1/BA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_4V6N_096 | 1/BA/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
| HL_4V6N_097 | 1/BA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4V6N_098 | 1/BA/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_4V6N_099 | 1/BA/1314:1323 | No text annotation | ||
| HL_4V6N_100 | 1/BA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V6N_101 | 1/BA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V6N_102 | 1/BA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_4V6N_103 | 1/BB/13:22 | No text annotation | homologous HL_2AKE_001 NA | |
| HL_4V6N_104 | 1/BB/31:39 | tRNA anticodon loop | homologous HL_4V9Q_214 HL_06059.6 | |
| HL_4V6N_122 | 1/BB/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1H4S_003 HL_28252.8 | |
| HL_4V6N_106 | 1/BD/13:23 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_4V6N_123 | 1/BD/32:40 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.6 | |
| HL_4V6N_108 | 1/BD/54:62 | T-loop with 2 stacked bulged bases | homologous HL_1B23_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6N_014 | No text annotation | ||
| HL_4V6N_022 | No text annotation | ||
| HL_4V6N_109 | No text annotation | ||
| HL_4V6N_028 | No text annotation | ||
| HL_4V6N_057 | tRNA anticodon loop | ||
| HL_4V6N_111 | No text annotation | ||
| HL_4V6N_112 | No text annotation | ||
| HL_4V6N_066 | No text annotation | ||
| HL_4V6N_069 | No text annotation | ||
| HL_4V6N_083 | No text annotation | ||
| HL_4V6N_114 | No text annotation | ||
| HL_4V6N_105 | No text annotation | ||
| HL_4V6N_107 | No text annotation | ||
| HL_4V6N_115 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V6N_001 | 1/AA/17:18, 1/AA/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4V6N_002 | 1/AA/23:28, 1/AA/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
| IL_4V6N_003 | 1/AA/30:31, 1/AA/51:54 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
| IL_4V6N_004 | 1/AA/71:79, 1/AA/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V6N_005 | 1/AB/24:30, 1/AB/510:516 | No text annotation | ||
| IL_4V6N_006 | 1/AB/36:37, 1/AB/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_4V6N_007 | 1/AB/43:44, 1/AB/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_4V6N_008 | 1/AB/80:85, 1/AB/97:106 | No text annotation | ||
| IL_4V6N_009 | 1/AB/183:184, 1/AB/212:214 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_4V6N_010 | 1/AB/188:194, 1/AB/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V6N_011 | 1/AB/239:245, 1/AB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_4V6N_012 | 1/AB/269:271, 1/AB/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4V6N_013 | 1/AB/274:281, 1/AB/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4V6N_214 | 1/AB/293:295, 1/AB/343:347 | No text annotation | homologous IL_4WF9_014 IL_69440.3 | |
| IL_4V6N_016 | 1/AB/481:484, 1/AB/496:509 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_4V6N_017 | 1/AB/536:539, 1/AB/554:557 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
| IL_4V6N_018 | 1/AB/564:566, 1/AB/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_4V6N_019 | 1/AB/606:610, 1/AB/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_4V6N_180 | 1/AB/672:674, 1/AB/806:808 | Isolated non-canonical cWW pair | homologous IL_9DFE_015 IL_87907.2 | |
| IL_4V6N_021 | 1/AB/674:678, 1/AB/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
| IL_4V6N_022 | 1/AB/697:698, 1/AB/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.6 | |
| IL_4V6N_023 | 1/AB/702:707, 1/AB/724:730 | Quadruple sheared | geometric IL_3FTF_001 IL_06136.2 | |
| IL_4V6N_024 | 1/AB/738:740, 1/AB/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_4V6N_025 | 1/AB/775:777, 1/AB/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V6N_026 | 1/AB/843:845, 1/AB/934:935 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_4V6N_027 | 1/AB/845:848, 1/AB/930:934 | No text annotation | ||
| IL_4V6N_028 | 1/AB/850:851, 1/AB/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4V6N_029 | 1/AB/856:862, 1/AB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_4V6N_030 | 1/AB/862:863, 1/AB/913:915 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_4V6N_031 | 1/AB/864:868, 1/AB/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_4V6N_032 | 1/AB/870:872, 1/AB/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_4V6N_033 | 1/AB/875:879, 1/AB/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4V6N_034 | 1/AB/880:881, 1/AB/895:897 | Major groove intercalation | geometric IL_4WF9_071 IL_82107.4 | |
| IL_4V6N_036 | 1/AB/994:996, 1/AB/1159:1160 | Single bulged C | homologous IL_7A0S_032 IL_61258.15 | |
| IL_4V6N_037 | 1/AB/998:1002, 1/AB/1153:1157 | UAA/GAN | geometric IL_5J7L_277 IL_38507.2 | |
| IL_4V6N_215 | 1/AB/1004:1011, 1/AB/1150:1151 | SSU/LSU pseudoknot | homologous IL_9DFE_036 IL_41203.4 | |
| IL_4V6N_039 | 1/AB/1011:1013, 1/AB/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_4V6N_040 | 1/AB/1018:1030, 1/AB/1124:1144 | No text annotation | ||
| IL_4V6N_041 | 1/AB/1031:1034, 1/AB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_4V6N_042 | 1/AB/1038:1041, 1/AB/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4V6N_043 | 1/AB/1043:1051, 1/AB/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4V6N_044 | 1/AB/1059:1062, 1/AB/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_4V6N_045 | 1/AB/1087:1090, 1/AB/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_4V6N_216 | 1/AB/1196:1198, 1/AB/1247:1250 | No text annotation | homologous IL_9DFE_044 IL_42997.3 | |
| IL_4V6N_217 | 1/AB/1202:1206, 1/AB/1240:1243 | No text annotation | ||
| IL_4V6N_048 | 1/AB/1208:1215, 1/AB/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V6N_049 | 1/AB/1262:1269, 1/AB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_4V6N_050 | 1/AB/1310:1313, 1/AB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
| IL_4V6N_218 | 1/AB/1319:1323, 1/AB/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4V6N_052 | 1/AB/1351:1355, 1/AB/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_4V6N_053 | 1/AB/1357:1361, 1/AB/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4V6N_219 | 1/AB/1415:1416, 1/AB/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_4V6N_055 | 1/AB/1417:1421, 1/AB/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V6N_056 | 1/AB/1432:1435, 1/AB/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4V6N_057 | 1/AB/1437:1440, 1/AB/1551:1555 | No text annotation | ||
| IL_4V6N_058 | 1/AB/1468:1471, 1/AB/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4V6N_185 | 1/AB/1474:1478, 1/AB/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4V6N_060 | 1/AB/1481:1482, 1/AB/1507:1510 | No text annotation | ||
| IL_4V6N_061 | 1/AB/1489:1491, 1/AB/1499:1500 | Single bulged A | geometric IL_4V9F_032 IL_31462.6 | |
| IL_4V6N_062 | 1/AB/1526:1529, 1/AB/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_4V6N_063 | 1/AB/1651:1656, 1/AB/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V6N_064 | 1/AB/1663:1665, 1/AB/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_4V6N_065 | 1/AB/1666:1669, 1/AB/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_4V6N_186 | 1/AB/1666:1674, 1/AB/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
| IL_4V6N_066 | 1/AB/1669:1674, 1/AB/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4V6N_067 | 1/AB/1686:1691, 1/AB/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_4V6N_068 | 1/AB/1712:1718, 1/AB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4V6N_069 | 1/AB/1720:1725, 1/AB/1735:1740 | Triple sheared with non-canonical cWW | geometric IL_7A0S_018 IL_06136.2 | |
| IL_4V6N_070 | 1/AB/1727:1728, 1/AB/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_4V6N_071 | 1/AB/1770:1771, 1/AB/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_31462.6 | |
| IL_4V6N_072 | 1/AB/1798:1804, 1/AB/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4V6N_073 | 1/AB/1837:1840, 1/AB/1902:1903 | No text annotation | ||
| IL_4V6N_187 | 1/AB/1837:1842, 1/AB/1898:1903 | No text annotation | ||
| IL_4V6N_074 | 1/AB/1841:1842, 1/AB/1898:1901 | Major groove intercalation | homologous IL_4WF9_071 IL_82107.4 | |
| IL_4V6N_188 | 1/AB/1846:1851, 1/AB/1891:1894 | No text annotation | ||
| IL_4V6N_189 | 1/AB/1851:1860, 1/AB/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_4V6N_075 | 1/AB/1864:1867, 1/AB/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4V6N_076 | 1/AB/1933:1934, 1/AB/1964:1967 | Multiple bulged bases | geometric IL_6IV9_001 IL_82107.4 | |
| IL_4V6N_077 | 1/AB/1934:1945, 1/AB/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_4V6N_078 | 1/AB/2050:2052, 1/AB/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4V6N_079 | 1/AB/2054:2056, 1/AB/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_4V6N_190 | 1/AB/2067:2069, 1/AB/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_4V6N_191 | 1/AB/2069:2071, 1/AB/2438:2442 | No text annotation | ||
| IL_4V6N_082 | 1/AB/2081:2083, 1/AB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4V6N_192 | 1/AB/2085:2087, 1/AB/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_4V6N_084 | 1/AB/2103:2105, 1/AB/2184:2186 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_87907.2 | |
| IL_4V6N_193 | 1/AB/2106:2108, 1/AB/2181:2183 | Isolated non-canonical cWW pair | geometric IL_7ECN_001 IL_87907.2 | |
| IL_4V6N_194 | 1/AB/2108:2120, 1/AB/2177:2181 | No text annotation | ||
| IL_4V6N_086 | 1/AB/2120:2123, 1/AB/2175:2177 | Other IL | geometric IL_5TBW_064 NA | |
| IL_4V6N_195 | 1/AB/2124:2128, 1/AB/2160:2174 | No text annotation | ||
| IL_4V6N_088 | 1/AB/2128:2136, 1/AB/2155:2160 | No text annotation | ||
| IL_4V6N_089 | 1/AB/2202:2204, 1/AB/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_4V6N_090 | 1/AB/2350:2353, 1/AB/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
| IL_4V6N_091 | 1/AB/2401:2403, 1/AB/2414:2415 | No text annotation | ||
| IL_4V6N_196 | 1/AB/2454:2455, 1/AB/2496:2498 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
| IL_4V6N_197 | 1/AB/2457:2459, 1/AB/2493:2494 | No text annotation | ||
| IL_4V6N_093 | 1/AB/2459:2461, 1/AB/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_4V6N_094 | 1/AB/2466:2470, 1/AB/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4V6N_095 | 1/AB/2507:2509, 1/AB/2579:2582 | No text annotation | homologous IL_5J7L_339 NA | |
| IL_4V6N_096 | 1/AB/2510:2512, 1/AB/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_4V6N_097 | 1/AB/2512:2513, 1/AB/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_4V6N_098 | 1/AB/2521:2523, 1/AB/2540:2544 | No text annotation | ||
| IL_4V6N_198 | 1/AB/2524:2526, 1/AB/2537:2539 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_4V6N_100 | 1/AB/2591:2592, 1/AB/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V6N_101 | 1/AB/2636:2640, 1/AB/2774:2782 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
| IL_4V6N_102 | 1/AB/2652:2658, 1/AB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_4V6N_103 | 1/AB/2680:2684, 1/AB/2725:2727 | C-loop | homologous IL_7A0S_095 IL_63596.11 | |
| IL_4V6N_104 | 1/AB/2687:2691, 1/AB/2718:2722 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
| IL_4V6N_105 | 1/AB/2695:2696, 1/AB/2711:2714 | Multiple bulged bases | homologous IL_4WF9_103 IL_42626.2 | |
| IL_4V6N_106 | 1/AB/2737:2742, 1/AB/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4V6N_107 | 1/AB/2806:2811, 1/AB/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_4V6N_108 | 1/AB/2838:2839, 1/AB/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V6N_109 | 1/AB/2843:2846, 1/AB/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V6N_199 | 1/AB/2847:2852, 1/AB/2865:2869 | tHS double platform | homologous IL_4WF9_108 IL_70411.2 | |
| IL_4V6N_111 | 1/BA/30:33, 1/BA/551:553 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
| IL_4V6N_112 | 1/BA/44:45, 1/BA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_4V6N_113 | 1/BA/47:52, 1/BA/359:361 | No text annotation | homologous IL_6CZR_115 NA | |
| IL_4V6N_114 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V6N_115 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4V6N_116 | 1/BA/67:69, 1/BA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_4V6N_117 | 1/BA/70:73, 1/BA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4V6N_118 | 1/BA/75:77, 1/BA/92:95 | Single bulged G, near cWW | homologous IL_5J7L_008 NA | |
| IL_4V6N_200 | 1/BA/128:131, 1/BA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4V6N_120 | 1/BA/132:136, 1/BA/227:230 | No text annotation | ||
| IL_4V6N_220 | 1/BA/137:139, 1/BA/224:226 | Isolated non-canonical cWW pair | geometric IL_7QQP_008 IL_87907.2 | |
| IL_4V6N_122 | 1/BA/144:146, 1/BA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_4V6N_123 | 1/BA/147:153, 1/BA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4V6N_221 | 1/BA/203:206, 1/BA/213:214 | No text annotation | ||
| IL_4V6N_125 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_4V6N_126 | 1/BA/249:252, 1/BA/274:275 | No text annotation | homologous IL_6CZR_405 NA | |
| IL_4V6N_127 | 1/BA/292:293, 1/BA/304:308 | No text annotation | ||
| IL_4V6N_128 | 1/BA/367:369, 1/BA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V6N_222 | 1/BA/371:375, 1/BA/389:390 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_4V6N_223 | 1/BA/375:376, 1/BA/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_4V6N_203 | 1/BA/409:416, 1/BA/427:433 | No text annotation | ||
| IL_4V6N_131 | 1/BA/440:442, 1/BA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4V6N_132 | 1/BA/446:449, 1/BA/486:488 | No text annotation | geometric IL_4PDQ_003 IL_41344.1 | |
| IL_4V6N_204 | 1/BA/446:450, 1/BA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_4V6N_133 | 1/BA/449:450, 1/BA/483:486 | No text annotation | ||
| IL_4V6N_134 | 1/BA/450:455, 1/BA/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V6N_224 | 1/BA/457:459, 1/BA/472:475 | Minor groove platform with extra cWW | geometric IL_4WF9_003 IL_90351.1 | |
| IL_4V6N_136 | 1/BA/460:462, 1/BA/470:471 | Single stack bend | geometric IL_7KGA_006 IL_26793.1 | |
| IL_4V6N_137 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4V6N_138 | 1/BA/515:521, 1/BA/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_4V6N_139 | 1/BA/569:575, 1/BA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_4V6N_140 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4V6N_141 | 1/BA/594:596, 1/BA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4V6N_142 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V6N_143 | 1/BA/604:612, 1/BA/628:634 | No text annotation | ||
| IL_4V6N_144 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
| IL_4V6N_145 | 1/BA/659:660, 1/BA/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4V6N_225 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_4V6N_147 | 1/BA/673:678, 1/BA/712:717 | No text annotation | geometric IL_6CZR_142 NA | |
| IL_4V6N_148 | 1/BA/684:688, 1/BA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_4V6N_149 | 1/BA/774:778, 1/BA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4V6N_150 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_4V6N_151 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V6N_206 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.6 | |
| IL_4V6N_153 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_4V6N_154 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V6N_155 | 1/BA/953:954, 1/BA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4V6N_156 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_4V6N_157 | 1/BA/998:999, 1/BA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_4V6N_207 | 1/BA/1048:1051, 1/BA/1207:1209 | No text annotation | homologous IL_6CZR_153 NA | |
| IL_4V6N_208 | 1/BA/1052:1056, 1/BA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V6N_159 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4V6N_160 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_4V6N_161 | 1/BA/1061:1063, 1/BA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_4V6N_162 | 1/BA/1124:1128, 1/BA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4V6N_163 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_4V6N_164 | 1/BA/1158:1161, 1/BA/1175:1181 | No text annotation | ||
| IL_4V6N_165 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4V6N_166 | 1/BA/1255:1258, 1/BA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V6N_167 | 1/BA/1259:1263, 1/BA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4V6N_168 | 1/BA/1303:1308, 1/BA/1329:1334 | Quadruple sheared | geometric IL_5LR3_002 IL_06136.2 | |
| IL_4V6N_169 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_4V6N_170 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_4V6N_209 | 1/BA/1405:1407, 1/BA/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_4V6N_210 | 1/BA/1407:1409, 1/BA/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_31531.3 | |
| IL_4V6N_226 | 1/BA/1412:1414, 1/BA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V6N_212 | 1/BA/1416:1420, 1/BA/1480:1484 | No text annotation | ||
| IL_4V6N_174 | 1/BA/1430:1435, 1/BA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_4V6N_227 | 1/BA/1439:1443, 1/BA/1459:1462 | No text annotation | geometric IL_5J7L_059 IL_65718.4 | |
| IL_4V6N_176 | 1/BA/1445:1448, 1/BA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6N_177 | No text annotation | ||
| IL_4V6N_178 | No text annotation | ||
| IL_4V6N_179 | No text annotation | ||
| IL_4V6N_014 | Isolated non-canonical cWW pair | ||
| IL_4V6N_015 | No text annotation | ||
| IL_4V6N_020 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_181 | Isolated near basepair | ||
| IL_4V6N_035 | No text annotation | ||
| IL_4V6N_038 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_182 | No text annotation | ||
| IL_4V6N_046 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_047 | No text annotation | ||
| IL_4V6N_183 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V6N_051 | No text annotation | ||
| IL_4V6N_054 | No text annotation | ||
| IL_4V6N_184 | No text annotation | ||
| IL_4V6N_059 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6N_080 | No text annotation | ||
| IL_4V6N_081 | No text annotation | ||
| IL_4V6N_083 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_085 | No text annotation | ||
| IL_4V6N_087 | No text annotation | ||
| IL_4V6N_092 | No text annotation | ||
| IL_4V6N_099 | No text annotation | ||
| IL_4V6N_110 | No text annotation | ||
| IL_4V6N_119 | No text annotation | ||
| IL_4V6N_121 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_124 | No text annotation | ||
| IL_4V6N_201 | No text annotation | ||
| IL_4V6N_129 | C-loop with extra cWW pair | ||
| IL_4V6N_202 | No text annotation | ||
| IL_4V6N_130 | No text annotation | ||
| IL_4V6N_135 | No text annotation | ||
| IL_4V6N_146 | No text annotation | ||
| IL_4V6N_205 | Isolated near basepair | ||
| IL_4V6N_152 | Isolated non-canonical cWW pair | ||
| IL_4V6N_158 | No text annotation | ||
| IL_4V6N_171 | No text annotation | ||
| IL_4V6N_172 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_211 | Partly complementary | ||
| IL_4V6N_173 | No text annotation | ||
| IL_4V6N_213 | No text annotation | ||
| IL_4V6N_175 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V6N_001 | 1/AA/10:16, 1/AA/68:70, 1/AA/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_4V6N_002 | 1/AB/30:31, 1/AB/474:481, 1/AB/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4V6N_027 | 1/AB/30:31, 1/AB/474:484, 1/AB/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V6N_028 | 1/AB/32:35, 1/AB/445:461, 1/AB/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4V6N_029 | 1/AB/55:57, 1/AB/70:76, 1/AB/110:115 | No text annotation | ||
| J3_4V6N_004 | 1/AB/683:689, 1/AB/773:775, 1/AB/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_4V6N_005 | 1/AB/698:700, 1/AB/732:736, 1/AB/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V6N_006 | 1/AB/1055:1057, 1/AB/1081:1087, 1/AB/1102:1104 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_4V6N_007 | 1/AB/1298:1303, 1/AB/1625:1627, 1/AB/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4V6N_008 | 1/AB/1306:1309, 1/AB/1605:1611, 1/AB/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_4V6N_009 | 1/AB/1344:1350, 1/AB/1381:1385, 1/AB/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_4V6N_030 | 1/AB/1424:1430, 1/AB/1563:1565, 1/AB/1568:1574 | No text annotation | ||
| J3_4V6N_010 | 1/AB/2091:2093, 1/AB/2196:2200, 1/AB/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_4V6N_011 | 1/AB/2295:2299, 1/AB/2317:2323, 1/AB/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_4V6N_031 | 1/AB/2517:2520, 1/AB/2545:2547, 1/AB/2561:2567 | No text annotation | ||
| J3_4V6N_013 | 1/AB/2789:2791, 1/AB/2805:2806, 1/AB/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_4V6N_014 | 1/AB/2812:2816, 1/AB/2830:2836, 1/AB/2882:2888 | No text annotation | ||
| J3_4V6N_032 | 1/AB/2812:2817, 1/AB/2829:2836, 1/AB/2882:2888 | No text annotation | ||
| J3_4V6N_015 | 1/BA/46:47, 1/BA/361:367, 1/BA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_4V6N_033 | 1/BA/46:52, 1/BA/359:367, 1/BA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_4V6N_016 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_4V6N_034 | 1/BA/586:588, 1/BA/651:655, 1/BA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_4V6N_017 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4V6N_018 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_4V6N_035 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation | homologous J3_5J7L_052 J3_25303.4 | |
| J3_4V6N_019 | 1/BA/941:946, 1/BA/1235:1237, 1/BA/1337:1342 | No text annotation | ||
| J3_4V6N_020 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_4V6N_021 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V6N_036 | 1/BA/990:997, 1/BA/1044:1047, 1/BA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_4V6N_022 | 1/BA/1003:1006, 1/BA/1023:1027, 1/BA/1034:1037 | No text annotation | ||
| J3_4V6N_039 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V6N_024 | 1/BA/1073:1074, 1/BA/1083:1087, 1/BA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V6N_037 | 1/BA/1116:1119, 1/BA/1154:1158, 1/BA/1181:1184 | No text annotation | ||
| J3_4V6N_038 | 1/BA/1116:1119, 1/BA/1154:1161, 1/BA/1175:1184 | No text annotation | ||
| J3_4V6N_026 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J4_4V6N_001 | 1/AB/268:269, 1/AB/370:375, 1/AB/399:406, 1/AB/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_4V6N_017 | 1/AB/297:302, 1/AB/315:319, 1/AB/323:325, 1/AB/337:341 | No text annotation | ||
| J4_4V6N_003 | 1/AB/601:604, 1/AB/624:628, 1/AB/635:638, 1/AB/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4V6N_018 | 1/AB/1270:1276, 1/AB/1294:1295, 1/AB/1645:1648, 1/AB/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_4V6N_005 | 1/AB/1310:1314, 1/AB/1338:1343, 1/AB/1404:1405, 1/AB/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V6N_006 | 1/AB/1313:1314, 1/AB/1338:1343, 1/AB/1404:1405, 1/AB/1597:1603 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
| J4_4V6N_007 | 1/AB/1444:1445, 1/AB/1466:1467, 1/AB/1525:1526, 1/AB/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4V6N_019 | 1/AB/1772:1776, 1/AB/1788:1792, 1/AB/1827:1831, 1/AB/1974:1979 | No text annotation | ||
| J4_4V6N_009 | 1/AB/1833:1835, 1/AB/1905:1906, 1/AB/1924:1933, 1/AB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V6N_010 | 1/AB/2074:2077, 1/AB/2243:2259, 1/AB/2281:2282, 1/AB/2427:2435 | No text annotation | ||
| J4_4V6N_011 | 1/AB/2643:2646, 1/AB/2674:2676, 1/AB/2731:2735, 1/AB/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_4V6N_020 | 1/BA/115:123, 1/BA/238:240, 1/BA/286:289, 1/BA/311:312 | No text annotation | ||
| J4_4V6N_013 | 1/BA/142:144, 1/BA/178:184, 1/BA/193:198, 1/BA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_4V6N_014 | 1/BA/575:577, 1/BA/764:769, 1/BA/810:821, 1/BA/879:880 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_4V6N_021 | 1/BB/7:10, 1/BB/25:27, 1/BB/43:51, 1/BB/63:66 | No text annotation | homologous J4_7U2I_014 J4_47701.1 | |
| J4_4V6N_016 | 1/BD/7:10, 1/BD/26:28, 1/BD/44:50, 1/BD/66:67 | No text annotation | homologous J4_6UGG_002 J4_70449.28 | |
| J5_4V6N_001 | 1/AB/47:54, 1/AB/116:121, 1/AB/130:131, 1/AB/148:150, 1/AB/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4V6N_010 | 1/AB/531:533, 1/AB/560:564, 1/AB/577:579, 1/AB/1261:1262, 1/AB/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V6N_003 | 1/AB/584:589, 1/AB/668:671, 1/AB/809:812, 1/AB/1195:1196, 1/AB/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V6N_004 | 1/AB/1674:1682, 1/AB/1706:1707, 1/AB/1751:1752, 1/AB/1756:1764, 1/AB/1988:1990 | No text annotation | homologous J5_4WF9_005 J5_62523.6 | |
| J5_4V6N_005 | 1/AB/2057:2064, 1/AB/2446:2454, 1/AB/2498:2506, 1/AB/2583:2588, 1/AB/2606:2611 | No text annotation | ||
| J5_4V6N_011 | 1/AB/2282:2289, 1/AB/2343:2347, 1/AB/2370:2373, 1/AB/2380:2395, 1/AB/2421:2427 | No text annotation | ||
| J5_4V6N_007 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:440, 1/BA/497:500, 1/BA/545:548 | No text annotation | ||
| J5_4V6N_008 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:442, 1/BA/492:500, 1/BA/545:548 | No text annotation | ||
| J5_4V6N_009 | 1/BA/58:61, 1/BA/106:113, 1/BA/314:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_4V6N_001 | 1/AB/45:46, 1/AB/179:183, 1/AB/214:224, 1/AB/231:235, 1/AB/262:266, 1/AB/426:433 | No text annotation | ||
| J7_4V6N_003 | 1/AB/8:15, 1/AB/525:531, 1/AB/2018:2023, 1/AB/2040:2043, 1/AB/2625:2630, 1/AB/2788:2789, 1/AB/2894:2895 | No text annotation | ||
| J7_4V6N_004 | 1/AB/817:822, 1/AB/835:838, 1/AB/940:946, 1/AB/971:976, 1/AB/987:991, 1/AB/1163:1164, 1/AB/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6N_003 | No text annotation | ||
| J3_4V6N_012 | No text annotation | ||
| J3_4V6N_023 | No text annotation | ||
| J3_4V6N_025 | No text annotation | ||
| J4_4V6N_002 | No text annotation | ||
| J4_4V6N_004 | No text annotation | ||
| J4_4V6N_008 | No text annotation | ||
| J4_4V6N_012 | No text annotation | ||
| J4_4V6N_015 | No text annotation | ||
| J5_4V6N_002 | No text annotation | ||
| J5_4V6N_006 | No text annotation | ||
| J7_4V6N_001 | No text annotation | ||
| J7_4V6N_002 | No text annotation |
Coloring options: