1 | | IL_73775.1Isolated non-canonical cWW (207)Isolated cWH basepair (2)CC cWW (1)Isolated near basepair (1)Self complementary (1) | 6 | 241 |
2 | | IL_37497.1Single bulged A (95)Major groove intercalation (6) | 5 | 101 |
3 | | IL_83039.12Single bulged U (90)Major groove intercalation (4) | 5 | 94 |
4 | | IL_51629.1Isolated cWH basepair (38)Isolated non-canonical cWW (3)Other IL (2)Decoding loop related (1)cWH basepair with bulged bases (1)Self complementary (1)Decoding loop with one bulged A (1)Multiple bulged bases, near cWW (1) | 6 | 65 |
5 | | IL_30621.1Tandem non-canonical cWW pairs (42)Self complementary (1) | 8 | 45 |
6 | | IL_16396.1Multiple bulged bases (17)Major groove outside cWW, minor groove, intercalation pocket (6)Stack outside cWW (3)Basepair outside cWW (3)Major groove platform outside cWW (2)Major groove intercalation (2)Major groove outside cWW, intercalation pocket (1) | 4 | 39 |
7 | | IL_00225.1Single bulged G (33)Major groove intercalation (2)Stack outside cWW (1) | 5 | 36 |
8 | | IL_61258.11Single bulged C (36) | 5 | 36 |
9 | | IL_27635.1Major groove platform (34)Major groove platform; stack outside cWW (1) | 5 | 36 |
10 | | IL_42622.1Minor groove platform (28)Multiple bulged bases (1) | 5 | 30 |
11 | | IL_76488.1Single stack bend (26)Not an internal loop (1)Single stack bend with bulge (1) | 5 | 29 |
12 | | IL_56467.7Triple sheared (28) | 10 | 28 |
13 | | IL_82068.1Isolated non-canonical cWW (14)Isolated non-canonical cWW with bulges (3)Single bulged G, near cWW (1)Self complementary (1) | 6 | 28 |
14 | | IL_70923.1Kink-turn (27) | 12 | 27 |
15 | | IL_50694.1Major groove platform; stack outside cWW (26) | 6 | 26 |
16 | | IL_09705.8Double sheared (25)Double sheared; A in syn (1) | 8 | 26 |
17 | | IL_52767.1Isolated cWS basepair (10)Isolated near basepair (6)Isolated non-canonical cWW (2)Self complementary (1)Single bulged G, near cWW (1)Intercalated cWW (1) | 6 | 24 |
18 | | IL_29007.1Minor groove platform (13)Major groove outside cWW, minor groove, intercalation pocket (7)Not an internal loop (1)Major groove minor groove platform; mini C-loop (1) | 5 | 22 |
19 | | IL_63596.5C-loop (17) | 7 | 17 |
20 | | IL_89002.1UAA/GAN (16) | 9 | 17 |
21 | | IL_45067.1Kink-turn (12)Kink-turn with non-sequential stacking (5) | 12 | 17 |
22 | | IL_59677.1Bulged stacked bases (6)Multiple bulged bases (4) | 4 | 16 |
23 | | IL_15066.1Tandem non-canonical cWW pairs (14) | 8 | 15 |
24 | | IL_63566.1Multiple bulged bases (6)Basepair outside cWW, intercalation pocket (5)Intercalation pocket (1) | 4 | 15 |
25 | | IL_09061.5Major groove minor groove platform; mini C-loop (13) | 6 | 14 |
26 | | IL_39521.6tSH-tHW-tHS (14) | 10 | 14 |
27 | | IL_71530.1Multiple bulged bases (11)Bulged stacked bases (1) | 4 | 14 |
28 | | IL_04059.1tSH-tHW (11)Other IL (1) | 8 | 13 |
29 | | IL_04346.68x7 Sarcin-Ricin; G-bulge (13) | 15 | 13 |
30 | | IL_38958.6Isolated tHS basepair with bulges (13) | 6 | 13 |
31 | | IL_82842.1Intercalated tWH (6)Stack and bulge (2)Intercalated cWW (2)Decoding loop related (1)Not an internal loop (1) | 5 | 13 |
32 | | IL_92788.1Major groove minor groove platform with extra cWW (7)Isolated basepair with bulged bases (3)Minor groove platform with extra cWW (1) | 8 | 13 |
33 | | IL_64417.1Decoding loop related (12) | 5 | 12 |
34 | | IL_53448.1Receptor of 11-nt loop-receptor motif (11) | 0 | 11 |
35 | | IL_05564.1Major groove platform with extra cWW (8) | 7 | 11 |
36 | | IL_15861.6SSU/LSU pseudoknot (10) | 10 | 10 |
37 | | IL_81389.3UAA/GAN related (5)UAA/GAN variation (3)UAA/GAN (2) | 9 | 10 |
38 | | IL_58764.2Minor groove platform related (3)Tandem non-canonical cWW pairs (2)Decoding loop related (1)UAA/GAN variation (1)Multiple bulged bases with non-canonical cWW (1) | 9 | 10 |
39 | | IL_92001.1Single stack bend (7)Single base bend (1)Other IL (1) | 5 | 10 |
40 | | IL_71110.1Tandem non-canonical cWW pairs (8)Other IL (1) | 8 | 10 |
41 | | IL_45612.1 | 8 | 10 |
42 | | IL_51265.2Kink-turn from U4 (5)Kink-turn (3)Kink-turn from T-box riboswitch (1) | 0 | 9 |
43 | | IL_40562.1AAA cross-strand stack (5)UAA/GAN (2)UAA/GAN variation (1)UAA/GAN related (1) | 9 | 9 |
44 | | IL_32396.1Major groove outside cWW, minor groove, intercalation pocket (2)Single bulged A (1)Multiple bulged bases (1) | 4 | 9 |
45 | | IL_05145.1Other IL (1) | 10 | 9 |
46 | | IL_90933.1Isolated non-canonical cWW with bulges (6)Isolated non-canonical cWW (2)Isolated basepair with bulged bases (1) | 6 | 9 |
47 | | IL_95601.2Major groove platform with intercalation (6)Minor groove platform (1)Major groove minor groove platform; mini C-loop (1)Major groove platform (1) | 5 | 9 |
48 | | IL_93341.18-nt loop receptor (5) | 0 | 9 |
49 | | IL_76223.1Major groove platform (7)Other IL (1) | 5 | 8 |
50 | | IL_19389.5Major groove platform with intercalated tWH (5)Other IL (1) | 6 | 8 |
51 | | IL_45433.1Tandem non-canonical cWW pairs (2)Other IL (1)tSH-tHW (1) | 8 | 8 |
52 | | IL_76042.17x6 Sarcin-Ricin; G-bulge (7)Sarcin-Ricin target in LSU H95; G-bulge (1) | 13 | 8 |
53 | | IL_87332.2Minor groove platform with extra cWW (5) | 7 | 8 |
54 | | IL_65969.1tSH-tSH-tHH-tHS (6) | 12 | 7 |
55 | | IL_67060.1C-loop (7) | 7 | 7 |
56 | | IL_16458.1Sarcin-Ricin target in LSU H95; G-bulge (4)7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)8x6 Sarcin-Ricin with inserted A; G-bulge (1)7x6 Sarcin-Ricin; G-bulge (1) | 13 | 7 |
57 | | IL_47263.1Major groove platform with extra pair (5)Other IL (1) | 7 | 7 |
58 | | IL_04668.1Other IL (1)Tandem non-canonical cWW pairs with near WC pairs (1) | 12 | 7 |
59 | | IL_15052.1Minor groove platform (7) | 0 | 7 |
60 | | IL_54997.6Isolated tWW turn (7) | 6 | 7 |
61 | | IL_58103.5Symmetric double minor groove platform (6)Minor groove platform (1) | 8 | 7 |
62 | | IL_63450.1Major groove platform with extra pair (4) | 7 | 7 |
63 | | IL_25186.1 | 0 | 6 |
64 | | IL_76308.4tSH-tHW-tHS-cWW (5)Tandem non-canonical cWW pairs with near WC pairs (1) | 12 | 6 |
65 | | IL_66414.5Triple sheared with non-canonical cWW (6) | 14 | 6 |
66 | | IL_07486.1Kink-turn (5) | 0 | 6 |
67 | | IL_56455.3Bacterial 5S Loop E (6) | 18 | 6 |
68 | | IL_04650.1Minor groove platform (2) | 0 | 6 |
69 | | IL_23164.1 | 0 | 6 |
70 | | IL_02284.4Decoding loop related (1) | 6 | 6 |
71 | | IL_37712.1C-loop (4)Major groove minor groove platform with tHH (2) | 7 | 6 |
72 | | IL_17470.5tHW-tHW cross-strand stack (6) | 11 | 6 |
73 | | IL_80545.1Isolated non-canonical cWW (3) | 6 | 6 |
74 | | IL_83162.4tHS double platform (4) | 10 | 6 |
75 | | IL_48100.1180 degree turn (1) | 5 | 6 |
76 | | IL_58384.1Multiple bulged bases (3)Minor groove platform (1)Major groove outside cWW, minor groove, intercalation pocket (1) | 4 | 6 |
77 | | IL_90991.5Multiple bulged bases (6) | 4 | 6 |
78 | | IL_49767.5UAA/GAN with extra cWW (5) | 11 | 5 |
79 | | IL_58502.1Major groove platform with intercalation (1) | 0 | 5 |
80 | | IL_60823.1Tandem non-canonical cWW pairs (1) | 7 | 5 |
81 | | IL_12566.2 | 9 | 5 |
82 | | IL_60992.5 | 16 | 5 |
83 | | IL_04638.1tSH-tHS-tHW (3) | 13 | 5 |
84 | | IL_16386.1Intercalated cWS (1) | 0 | 5 |
85 | | IL_47078.1Minor groove platform (5) | 0 | 5 |
86 | | IL_57188.3Kink-turn related (4) | 11 | 5 |
87 | | IL_68511.1Non canonical cWW and near pair (1)Tandem non-canonical cWW pairs (1) | 8 | 5 |
88 | | IL_62552.1 | 0 | 5 |
89 | | IL_23544.2 | 7 | 5 |
90 | | IL_17069.3Kink-turn related (5) | 13 | 5 |
91 | | IL_90538.3Kink-turn (5) | 13 | 5 |
92 | | IL_45944.3 | 0 | 5 |
93 | | IL_55351.1 | 6 | 5 |
94 | | IL_65510.1 | 0 | 5 |
95 | | IL_53251.1 | 6 | 5 |
96 | | IL_69145.1Pseudoknot (3) | 0 | 5 |
97 | | IL_55953.3 | 0 | 4 |
98 | | IL_58686.1Multiple bulged bases with near cWW (1) | 9 | 4 |
99 | | IL_88269.36x5 Sarcin-Ricin; G-bulge (3)tSH-tHW-tWW (1) | 0 | 4 |
100 | | IL_38862.1tSH-tHW-tHS (2)5x5 Sarcin-Ricin with intercalated A; G-bulge (2) | 10 | 4 |
101 | | IL_50715.1 | 21 | 4 |
102 | | IL_81589.1 | 13 | 4 |
103 | | IL_08296.3 | 8 | 4 |
104 | | IL_74697.1Decoding loop related (1) | 7 | 4 |
105 | | IL_68506.1 | 0 | 4 |
106 | | IL_54678.4Major groove platform with intercalation (1) | 4 | 4 |
107 | | IL_97697.1Reverse turn (4) | 0 | 4 |
108 | | IL_19954.1 | 12 | 4 |
109 | | IL_55178.1tWW and non-canonical cWW (1)Tandem non-canonical cWW pairs (1)Non canonical cWW and near pair (1)tWW and near cWH (1) | 0 | 4 |
110 | | IL_29346.1Left turn (3) | 0 | 4 |
111 | | IL_80604.1tWH-tWH-tHW-tHW (3) | 14 | 4 |
112 | | IL_49460.1 | 10 | 4 |
113 | | IL_06136.1Quadruple sheared (4) | 0 | 4 |
114 | | IL_24606.18x6 Sarcin-Ricin with inserted Y; G-bulge (3) | 14 | 3 |
115 | | IL_65851.2tSH-tHW-tHS with extra cWW pairs (1) | 0 | 3 |
116 | | IL_18471.1Major groove platform with extra cWW (2) | 7 | 3 |
117 | | IL_69440.1 | 8 | 3 |
118 | | IL_07144.1Other IL (1) | 10 | 3 |
119 | | IL_18472.2Symmetric double minor groove platform (1) | 0 | 3 |
120 | | IL_93630.1C-loop with extra cWW pair (1) | 9 | 3 |
121 | | IL_76319.1Isolated cWS basepair (2) | 7 | 3 |
122 | | IL_44312.1Receptor of 11-nt loop-receptor motif (2) | 9 | 3 |
123 | | IL_64181.1Triple sheared related (1) | 10 | 3 |
124 | | IL_74051.1Kink-turn (1) | 0 | 3 |
125 | | IL_26785.110x8 Sarcin-Ricin; G-bulge (3) | 0 | 3 |
126 | | IL_96303.1 | 0 | 3 |
127 | | IL_30542.2 | 8 | 3 |
128 | | IL_93830.27x7 Sarcin-Ricin with intercalated A; G-bulge (3) | 14 | 3 |
129 | | IL_27393.7 | 0 | 3 |
130 | | IL_58960.1 | 0 | 3 |
131 | | IL_67474.4180 degree turn (2) | 6 | 3 |
132 | | IL_90318.1UAA/GAN with extra pair (3) | 0 | 3 |
133 | | IL_70627.2 | 0 | 3 |
134 | | IL_19557.2Isolated cWH basepair (1) | 5 | 3 |
135 | | IL_82426.4Part of G-quadruplex (3) | 0 | 3 |
136 | | IL_09129.1 | 0 | 3 |
137 | | IL_75283.2 | 0 | 3 |
138 | | IL_87284.1tSH-tHW-tWH-tHS (3) | 0 | 3 |
139 | | IL_68574.2 | 8 | 3 |
140 | | IL_64900.1Kink-turn (3) | 0 | 3 |
141 | | IL_75461.3180 degree turn (3) | 7 | 3 |
142 | | IL_02349.48x6 Sarcin-Ricin with bulged A; G-bulge (2) | 0 | 3 |
143 | | IL_34470.29x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1) | 0 | 3 |
144 | | IL_34739.1 | 0 | 3 |
145 | | IL_38634.5cWH basepair and non-canonical AC (2) | 0 | 2 |
146 | | IL_30149.1 | 0 | 2 |
147 | | IL_60192.1Kink-turn (2) | 12 | 2 |
148 | | IL_91549.1 | 9 | 2 |
149 | | IL_38684.1 | 0 | 2 |
150 | | IL_53581.1Kink-turn related (2) | 0 | 2 |
151 | | IL_81522.1Major groove minor groove platform with intercalation; mini C-loop (2) | 0 | 2 |
152 | | IL_91592.1 | 0 | 2 |
153 | | IL_22248.1Other IL (1) | 0 | 2 |
154 | | IL_34822.1 | 0 | 2 |
155 | | IL_46559.1 | 0 | 2 |
156 | | IL_63797.1Major groove outside cWW, minor groove, intercalation pocket (1)Minor groove platform (1) | 5 | 2 |
157 | | IL_26728.1 | 9 | 2 |
158 | | IL_35728.19x8 Sarcin-Ricin; G-bulge (1)tSH-tHW-tHH-tHS (1) | 17 | 2 |
159 | | IL_93699.1Kink-turn (1) | 0 | 2 |
160 | | IL_53749.1 | 0 | 2 |
161 | | IL_81631.15x5 Sarcin-Ricin with intercalated A; G-bulge (1) | 0 | 2 |
162 | | IL_36143.2 | 5 | 2 |
163 | | IL_36973.5 | 14 | 2 |
164 | | IL_77870.1 | 0 | 2 |
165 | | IL_45371.1 | 0 | 2 |
166 | | IL_92192.1Other IL (1) | 9 | 2 |
167 | | IL_01206.1 | 0 | 2 |
168 | | IL_14768.1Triple sheared related (1) | 12 | 2 |
169 | | IL_86929.1Double sheared; A in syn; two near cWW pairs (1)Triple sheared with non-canonical cWW (1) | 12 | 2 |
170 | | IL_28026.1 | 15 | 2 |
171 | | IL_59302.1 | 0 | 2 |
172 | | IL_78349.1 | 0 | 2 |
173 | | IL_19724.1 | 7 | 2 |
174 | | IL_57343.1 | 0 | 2 |
175 | | IL_64879.1Triple sheared related (2) | 11 | 2 |
176 | | IL_52493.1 | 0 | 2 |
177 | | IL_59423.1 | 9 | 2 |
178 | | IL_47973.1 | 8 | 2 |
179 | | IL_52708.1 | 0 | 2 |
180 | | IL_10207.1Minor groove platform related (2) | 13 | 2 |
181 | | IL_15218.1 | 0 | 2 |
182 | | IL_23992.1 | 0 | 2 |
183 | | IL_37722.1Kink-turn (1) | 0 | 2 |
184 | | IL_65263.1 | 7 | 2 |
185 | | IL_42032.1 | 0 | 2 |
186 | | IL_10484.1Double sheared (2) | 0 | 2 |
187 | | IL_73448.1 | 0 | 2 |
188 | | IL_93211.1 | 0 | 2 |
189 | | IL_02656.1Other IL (1) | 0 | 2 |
190 | | IL_38394.1Stack outside cWW (1) | 0 | 2 |
191 | | IL_58490.1Multiple bulged bases (1)Bulged stacked bases (1) | 6 | 2 |
192 | | IL_76195.2 | 6 | 2 |
193 | | IL_80884.1 | 0 | 2 |
194 | | IL_84251.1 | 0 | 2 |
195 | | IL_88190.1 | 12 | 1 |
196 | | IL_95811.1Vitamin B12 Aptamer (1) | 0 | 1 |
197 | | IL_06300.1 | 0 | 1 |
198 | | IL_43140.1 | 0 | 1 |
199 | | IL_11882.1 | 0 | 1 |
200 | | IL_21121.1 | 0 | 1 |
201 | | IL_34780.1Kink-turn (1) | 0 | 1 |
202 | | IL_46461.1 | 0 | 1 |
203 | | IL_73759.1Part of G-quadruplex (1) | 0 | 1 |
204 | | IL_84409.1 | 0 | 1 |
205 | | IL_93585.1Kink-turn related (1) | 0 | 1 |
206 | | IL_04105.1 | 0 | 1 |
207 | | IL_15978.1 | 10 | 1 |
208 | | IL_95961.1 | 0 | 1 |
209 | | IL_30174.1Minor groove platform (1) | 6 | 1 |
210 | | IL_43166.1 | 0 | 1 |
211 | | IL_69573.1 | 17 | 1 |
212 | | IL_56105.1 | 8 | 1 |
213 | | IL_84665.1 | 0 | 1 |
214 | | IL_16073.1 | 0 | 1 |
215 | | IL_95993.1Kink-turn related (1) | 11 | 1 |
216 | | IL_19023.1 | 0 | 1 |
217 | | IL_30441.1 | 0 | 1 |
218 | | IL_53601.1 | 10 | 1 |
219 | | IL_70096.1Kink-turn related (1) | 0 | 1 |
220 | | IL_91710.1 | 11 | 1 |
221 | | IL_12750.1 | 0 | 1 |
222 | | IL_22436.1Kink-turn related (1) | 0 | 1 |
223 | | IL_46732.1 | 8 | 1 |
224 | | IL_85222.1 | 0 | 1 |
225 | | IL_51101.1 | 0 | 1 |
226 | | IL_58819.1 | 0 | 1 |
227 | | IL_89055.1 | 0 | 1 |
228 | | IL_08001.1tSH-tHW-tHH-tHS (1) | 18 | 1 |
229 | | IL_19048.1 | 0 | 1 |
230 | | IL_44325.1 | 0 | 1 |
231 | | IL_61242.1 | 0 | 1 |
232 | | IL_70149.1 | 0 | 1 |
233 | | IL_91920.1 | 0 | 1 |
234 | | IL_13394.1 | 0 | 1 |
235 | | IL_22821.1Pseudoknot (1) | 0 | 1 |
236 | | IL_74184.1 | 0 | 1 |
237 | | IL_85630.1 | 0 | 1 |
238 | | IL_38969.1Reverse kink-turn related (1) | 0 | 1 |
239 | | IL_51191.1 | 0 | 1 |
240 | | IL_77827.1 | 0 | 1 |
241 | | IL_96371.1 | 0 | 1 |
242 | | IL_53787.1Pseudoknot (1) | 0 | 1 |
243 | | IL_00559.1 | 0 | 1 |
244 | | IL_14397.1 | 10 | 1 |
245 | | IL_23152.1 | 0 | 1 |
246 | | IL_47108.1 | 0 | 1 |
247 | | IL_56867.1 | 13 | 1 |
248 | | IL_64739.1 | 7 | 1 |
249 | | IL_85652.1 | 0 | 1 |
250 | | IL_94165.1 | 0 | 1 |
251 | | IL_04667.1Kink-turn related (1) | 13 | 1 |
252 | | IL_39287.1Kink-turn related (1) | 0 | 1 |
253 | | IL_59281.1 | 9 | 1 |
254 | | IL_90346.1 | 0 | 1 |
255 | | IL_96451.1 | 9 | 1 |
256 | | IL_31504.1 | 0 | 1 |
257 | | IL_61300.1 | 0 | 1 |
258 | | IL_70801.1 | 0 | 1 |
259 | | IL_64842.1 | 0 | 1 |
260 | | IL_74736.1 | 9 | 1 |
261 | | IL_94351.1 | 0 | 1 |
262 | | IL_16665.1 | 0 | 1 |
263 | | IL_90348.1 | 0 | 1 |
264 | | IL_97253.1 | 0 | 1 |
265 | | IL_31890.1 | 0 | 1 |
266 | | IL_54896.1 | 0 | 1 |
267 | | IL_92343.1 | 10 | 1 |
268 | | IL_01393.1 | 0 | 1 |
269 | | IL_37629.1Stack outside cWW (1) | 5 | 1 |
270 | | IL_47972.1 | 0 | 1 |
271 | | IL_94501.1 | 15 | 1 |
272 | | IL_04736.1 | 0 | 1 |
273 | | IL_28564.1 | 0 | 1 |
274 | | IL_80412.1 | 0 | 1 |
275 | | IL_19852.1Part of G-quadruplex (1) | 0 | 1 |
276 | | IL_45488.1 | 0 | 1 |
277 | | IL_62654.1tSH-tHH-tHS (1) | 0 | 1 |
278 | | IL_23735.1 | 26 | 1 |
279 | | IL_87290.1Kink-turn related (1) | 0 | 1 |
280 | | IL_94777.1 | 10 | 1 |
281 | | IL_41414.1 | 0 | 1 |
282 | | IL_68633.19x7 Sarcin-Ricin with inserted C; G-bulge (1) | 0 | 1 |
283 | | IL_90720.1 | 9 | 1 |
284 | | IL_98353.1 | 8 | 1 |
285 | | IL_33557.1Kink-turn related (1) | 0 | 1 |
286 | | IL_62947.1 | 0 | 1 |
287 | | IL_93094.1Reverse kink-turn (1) | 0 | 1 |
288 | | IL_94878.1 | 25 | 1 |
289 | | IL_17765.1 | 0 | 1 |
290 | | IL_59724.18x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1) | 0 | 1 |
291 | | IL_69091.1 | 0 | 1 |
292 | | IL_20245.1 | 0 | 1 |
293 | | IL_84205.1180 degree turn (1) | 0 | 1 |
294 | | IL_15484.1 | 0 | 1 |
295 | | IL_24499.1 | 0 | 1 |
296 | | IL_87677.1tWH-tWH-tHW-tHW (1) | 12 | 1 |
297 | | IL_17971.1 | 10 | 1 |
298 | | IL_29509.1 | 15 | 1 |
299 | | IL_60171.1Major groove platform; stack outside cWW (1) | 8 | 1 |
300 | | IL_10810.1 | 0 | 1 |
301 | | IL_20463.17x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1) | 0 | 1 |
302 | | IL_46112.1 | 0 | 1 |
303 | | IL_55896.1Triple sheared (1) | 10 | 1 |
304 | | IL_73662.1 | 0 | 1 |