#Varna 2DMotifNum NtsInstances
1
  • IL_73775.1
IL_73775.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • UU cWW (8)
  • CC cWW (5)
  • CA cWW (3)
  • Isolated cWH basepair (2)
  • AA cWW (2)
  • Self complementary (1)
  • UC cWW (1)
  • Isolated near basepair (1)
  • UU cWW water inserted (1)
  • UG cWW (1)
  • CA cWW with bulged A (1)
  • 6241
    2
    • IL_37497.1
    IL_37497.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single bulged A (89)
  • Major groove intercalation (4)
  • 5101
    3
    • IL_83039.12
    IL_83039.12
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single bulged U (82)
  • 594
    4
    • IL_51629.1
    IL_51629.1
    • Basepair signature: cWW-cHW-cWW
    • History status: Exact match
  • Isolated cWH basepair (38)
  • Other IL (1)
  • Multiple bulged bases, near cWW (1)
  • Decoding loop with one bulged A (1)
  • Self complementary (1)
  • cWH basepair with bulged bases (1)
  • Decoding loop related (1)
  • 665
    5
    • IL_30621.1
    IL_30621.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (40)
  • Self complementary (1)
  • 845
    6
    • IL_16396.1
    IL_16396.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (17)
  • Major groove outside cWW, minor groove, intercalation pocket (6)
  • Basepair outside cWW (3)
  • Stack outside cWW (3)
  • Major groove intercalation (2)
  • Major groove platform outside cWW (2)
  • Major groove outside cWW, intercalation pocket (1)
  • 439
    7
    • IL_61258.11
    IL_61258.11
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single bulged C (33)
  • 536
    8
    • IL_27635.1
    IL_27635.1
    • Basepair signature: cWW-cSH-cWW
    • History status: Exact match
  • Major groove platform (33)
  • Major groove platform; stack outside cWW (1)
  • 536
    9
    • IL_00225.1
    IL_00225.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single bulged G (32)
  • Stack outside cWW (1)
  • 536
    10
    • IL_42622.1
    IL_42622.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Minor groove platform (28)
  • Multiple bulged bases (1)
  • 530
    11
    • IL_76488.1
    IL_76488.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single stack bend (26)
  • Single stack bend with bulge (1)
  • Not an internal loop (1)
  • 529
    12
    • IL_82068.1
    IL_82068.1
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
  • Isolated non-canonical cWW with bulges (17)
  • Self complementary (1)
  • Single bulged G, near cWW (1)
  • 628
    13
    • IL_56467.7
    IL_56467.7
    • Basepair signature: cWW-L-R-tSH-tHS-cWW
    • History status: Exact match
  • Triple sheared (28)
  • 1028
    14
    • IL_70923.1
    IL_70923.1
    • Basepair signature: cWW-L-L-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Kink-turn (18)
  • 1227
    15
    • IL_09705.8
    IL_09705.8
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Exact match
  • Double sheared (23)
  • tWS-tSW (1)
  • 826
    16
    • IL_50694.1
    IL_50694.1
    • Basepair signature: cWW-tSH-L-cWW
    • History status: Exact match
  • Major groove platform; stack outside cWW (26)
  • 626
    17
    • IL_52767.1
    IL_52767.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
  • Isolated cWS basepair (10)
  • Isolated near basepair (6)
  • Intercalated cWW (1)
  • Self complementary (1)
  • Single bulged G, near cWW (1)
  • 624
    18
    • IL_29007.1
    IL_29007.1
    • Basepair signature: cWW-tHS-cWW
    • History status: Exact match
  • Minor groove platform (13)
  • Major groove outside cWW, minor groove, intercalation pocket (7)
  • Major groove minor groove platform; mini C-loop (1)
  • Not an internal loop (1)
  • 522
    19
    • IL_45067.1
    IL_45067.1
    • Basepair signature: cWW-L-L-R-tSH-R-tSS-L-cWW
    • History status: Exact match
  • Kink-turn (12)
  • Kink-turn with non-sequential stacking (5)
  • 1217
    20
    • IL_63596.5
    IL_63596.5
    • Basepair signature: cWW-tWH-cSH-L-cWS-cWW
    • History status: Exact match
  • C-loop (15)
  • 717
    21
    • IL_89002.1
    IL_89002.1
    • Basepair signature: cWW-L-R-L-tHS-cWW
    • History status: Exact match
  • UAA/GAN (16)
  • 917
    22
    • IL_59677.1
    IL_59677.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (8)
  • 416
    23
    • IL_15066.1
    IL_15066.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (14)
  • 815
    24
    • IL_63566.1
    IL_63566.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (6)
  • Basepair outside cWW, intercalation pocket (5)
  • Intercalation pocket (1)
  • 415
    25
    • IL_09061.5
    IL_09061.5
    • Basepair signature: cWW-cSH-cWS-cWW
    • History status: Exact match
  • Major groove minor groove platform; mini C-loop (13)
  • 614
    26
    • IL_39521.6
    IL_39521.6
    • Basepair signature: cWW-tSH-tHW-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tHS (14)
  • 1014
    27
    • IL_71530.1
    IL_71530.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (11)
  • 414
    28
    • IL_82842.1
    IL_82842.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Intercalated tWH (6)
  • Intercalated cWW (2)
  • Stack and bulge (2)
  • Not an internal loop (1)
  • Decoding loop related (1)
  • 513
    29
    • IL_92788.1
    IL_92788.1
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: Exact match
  • Major groove minor groove platform with extra cWW (7)
  • Isolated basepair with bulged bases (3)
  • Minor groove platform with extra cWW (1)
  • 813
    30
    • IL_04059.1
    IL_04059.1
    • Basepair signature: cWW-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW (11)
  • Other IL (1)
  • 813
    31
    • IL_04346.6
    IL_04346.6
    • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 8x7 Sarcin-Ricin; G-bulge (13)
  • 1513
    32
    • IL_38958.6
    IL_38958.6
    • Basepair signature: cWW-tHS-cWW
    • History status: Exact match
  • Isolated tHS basepair with bulges (13)
  • 613
    33
    • IL_64417.1
    IL_64417.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Decoding loop related (12)
  • 512
    34
    • IL_05564.1
    IL_05564.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
  • Major groove platform with extra cWW (8)
  • 711
    35
    • IL_53448.1
    IL_53448.1
    • Basepair signature: cWW-tWH-cSH-cWW
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (11)
  • 811
    36
    • IL_92001.1
    IL_92001.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single stack bend (7)
  • Other IL (1)
  • Single base bend (1)
  • 510
    37
    • IL_71110.1
    IL_71110.1
    • Basepair signature: cWW-cWW-L-R-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (8)
  • Other IL (1)
  • 810
    38
    • IL_45612.1
    IL_45612.1
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: Exact match
    810
    39
    • IL_15861.6
    IL_15861.6
    • Basepair signature: cWW-L-L-L-cSH-L-cWW
    • History status: Exact match
  • SSU/LSU pseudoknot (10)
  • 1010
    40
    • IL_81389.3
    IL_81389.3
    • Basepair signature: cWW-tSH-L-R-L-cWW
    • History status: Exact match
  • UAA/GAN related (5)
  • UAA/GAN variation (3)
  • UAA/GAN (2)
  • 910
    41
    • IL_58764.2
    IL_58764.2
    • Basepair signature: cWW-L-R-L-R-L-cWW
    • History status: Exact match
  • Minor groove platform related (3)
  • Tandem non-canonical cWW pairs (2)
  • Multiple bulged bases with non-canonical cWW (1)
  • UAA/GAN variation (1)
  • Decoding loop related (1)
  • 910
    42
    • IL_51265.2
    IL_51265.2
    • Basepair signature: cWW-L-R-L-L-tHS-cWW
    • History status: Exact match
  • Kink-turn from U4 (5)
  • Kink-turn (3)
  • Kink-turn from T-box riboswitch (1)
  • 109
    43
    • IL_40562.1
    IL_40562.1
    • Basepair signature: cWW-L-R-L-tHS-cWW
    • History status: Exact match
  • AAA cross-strand stack (5)
  • UAA/GAN (2)
  • UAA/GAN related (1)
  • UAA/GAN variation (1)
  • 99
    44
    • IL_32396.1
    IL_32396.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Major groove outside cWW, minor groove, intercalation pocket (2)
  • Multiple bulged bases (1)
  • Single bulged A (1)
  • 49
    45
    • IL_05145.1
    IL_05145.1
    • Basepair signature: cWW-cWW-cWW-cWW-cWW
    • History status: Exact match
  • Other IL (1)
  • 109
    46
    • IL_90933.1
    IL_90933.1
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
  • Isolated non-canonical cWW with bulges (8)
  • Isolated basepair with bulged bases (1)
  • 69
    47
    • IL_95601.2
    IL_95601.2
    • Basepair signature: cWW-tSH-cWW
    • History status: Exact match
  • Minor groove platform with intercalation (6)
  • Major groove minor groove platform; mini C-loop (1)
  • Minor groove platform (1)
  • 59
    48
    • IL_93341.1
    IL_93341.1
    • Basepair signature: cWW-cWW-cSH-L-cWW
    • History status: Exact match
  • 8-nt loop receptor (5)
  • 89
    49
    • IL_19389.5
    IL_19389.5
    • Basepair signature: cWW-L-cSH-cWW
    • History status: Exact match
  • Major groove platform with intercalated tWH (5)
  • Other IL (1)
  • 68
    50
    • IL_45433.1
    IL_45433.1
    • Basepair signature: cWW-L-R-L-R-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (2)
  • tSH-tHW (1)
  • Other IL (1)
  • 88
    51
    • IL_76042.1
    IL_76042.1
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x6 Sarcin-Ricin; G-bulge (7)
  • Sarcin-Ricin target in LSU H95; G-bulge (1)
  • 138
    52
    • IL_87332.2
    IL_87332.2
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
  • Minor groove platform with extra cWW (5)
  • 78
    53
    • IL_76223.1
    IL_76223.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Major groove platform (7)
  • Other IL (1)
  • 58
    54
    • IL_16458.1
    IL_16458.1
    • Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-cWW
    • History status: Exact match
  • Sarcin-Ricin target in LSU H95; G-bulge (4)
  • 7x6 Sarcin-Ricin; G-bulge (1)
  • 8x6 Sarcin-Ricin with inserted A; G-bulge (1)
  • 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
  • 137
    55
    • IL_47263.1
    IL_47263.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
  • Major groove platform with extra pair (5)
  • Other IL (1)
  • 77
    56
    • IL_04668.1
    IL_04668.1
    • Basepair signature: cWW-cWW-cWW-L-R-L-R-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs with near WC pairs (1)
  • Other IL (1)
  • 127
    57
    • IL_15052.1
    IL_15052.1
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
  • Minor groove platform (7)
  • 67
    58
    • IL_54997.6
    IL_54997.6
    • Basepair signature: cWW-tWW-cWW
    • History status: Exact match
  • Isolated tWW turn (7)
  • 67
    59
    • IL_58103.5
    IL_58103.5
    • Basepair signature: cWW-L-L-cWS-tSW-cWW
    • History status: Exact match
  • Symmetric double minor groove platform (6)
  • Minor groove platform (1)
  • 87
    60
    • IL_63450.1
    IL_63450.1
    • Basepair signature: cWW-cWW-cSH-cWW
    • History status: Exact match
  • Major groove platform with extra pair (4)
  • 77
    61
    • IL_65969.1
    IL_65969.1
    • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
    • History status: Exact match
  • tSH-tSH-tHH-tHS (5)
  • 127
    62
    • IL_67060.1
    IL_67060.1
    • Basepair signature: cWW-tWH-cSH-L-cWS-cWW
    • History status: Exact match
  • C-loop (7)
  • 77
    63
    • IL_23164.1
    IL_23164.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    76
    64
    • IL_02284.4
    IL_02284.4
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
  • Decoding loop related (1)
  • 66
    65
    • IL_37712.1
    IL_37712.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
  • C-loop (4)
  • Major groove minor groove platform with tHH (2)
  • 76
    66
    • IL_17470.5
    IL_17470.5
    • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
    • History status: Exact match
  • tHW-tHW cross-strand stack (3)
  • 116
    67
    • IL_80545.1
    IL_80545.1
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
    66
    68
    • IL_83162.4
    IL_83162.4
    • Basepair signature: cWW-tSH-L-L-tHH-cWW
    • History status: Exact match
    106
    69
    • IL_48100.1
    IL_48100.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • 180 degree turn (1)
  • 56
    70
    • IL_58384.1
    IL_58384.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (3)
  • Major groove outside cWW, minor groove, intercalation pocket (1)
  • Minor groove platform (1)
  • 46
    71
    • IL_90991.5
    IL_90991.5
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (6)
  • 46
    72
    • IL_25186.1
    IL_25186.1
    • Basepair signature: cWW-L-R-L-R-L-R-cWW
    • History status: Exact match
    106
    73
    • IL_76308.4
    IL_76308.4
    • Basepair signature: cWW-tSH-tHW-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS-cWW (5)
  • Tandem non-canonical cWW pairs with near WC pairs (1)
  • 126
    74
    • IL_66414.5
    IL_66414.5
    • Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW
    • History status: Exact match
  • Triple sheared with non-canonical cWW (6)
  • 146
    75
    • IL_07486.1
    IL_07486.1
    • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
    • History status: Exact match
  • Kink-turn (5)
  • 126
    76
    • IL_56455.3
    IL_56455.3
    • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
    • History status: Exact match
  • Bacterial 5S Loop E (6)
  • 186
    77
    • IL_04650.1
    IL_04650.1
    • Basepair signature: cWW-cSH-L-L-R-L-cWW
    • History status: Exact match
  • Minor groove platform (2)
  • 96
    78
    • IL_57188.3
    IL_57188.3
    • Basepair signature: cWW-tWW-cSH-L-tWW-cSH-cWW
    • History status: Exact match
    115
    79
    • IL_68511.1
    IL_68511.1
    • Basepair signature: cWW-cWW-cWH-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (1)
  • Non canonical cWW and near pair (1)
  • 85
    80
    • IL_62552.1
    IL_62552.1
    • Basepair signature: cWW-L-L-L-R-L-cWW
    • History status: Exact match
    95
    81
    • IL_23544.2
    IL_23544.2
    • Basepair signature: cWW-L-R-R-cWW
    • History status: Exact match
    75
    82
    • IL_17069.3
    IL_17069.3
    • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
    • History status: Exact match
  • Kink-turn related (5)
  • 135
    83
    • IL_90538.3
    IL_90538.3
    • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-tHS-L-bif-cWW
    • History status: Exact match
  • Kink-turn (5)
  • 135
    84
    • IL_45944.3
    IL_45944.3
    • Basepair signature: cWW-L-L-tWH-L-R-L-cWW
    • History status: Exact match
    115
    85
    • IL_55351.1
    IL_55351.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    65
    86
    • IL_65510.1
    IL_65510.1
    • Basepair signature: cWW-L-L-L-R-L-cWW
    • History status: Exact match
    95
    87
    • IL_53251.1
    IL_53251.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    65
    88
    • IL_69145.1
    IL_69145.1
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
  • Pseudoknot (3)
  • 65
    89
    • IL_49767.5
    IL_49767.5
    • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
    • History status: Exact match
  • UAA/GAN with extra cWW (5)
  • 115
    90
    • IL_58502.1
    IL_58502.1
    • Basepair signature: cWW-L-R-L-R-L-cWW
    • History status: Exact match
  • Major groove platform with intercalation (1)
  • 95
    91
    • IL_60823.1
    IL_60823.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (1)
  • 75
    92
    • IL_12566.2
    IL_12566.2
    • Basepair signature: cWW-L-L-L-tHS-cWW
    • History status: Exact match
    95
    93
    • IL_60992.5
    IL_60992.5
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
    • History status: Exact match
    165
    94
    • IL_04638.1
    IL_04638.1
    • Basepair signature: cWW-tSH-tHW-L-tHS-L-L-cWW
    • History status: Exact match
  • tSH-tHS-tHW (3)
  • 135
    95
    • IL_16386.1
    IL_16386.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Intercalated cWS (1)
  • 55
    96
    • IL_47078.1
    IL_47078.1
    • Basepair signature: cWW-L-L-cWS-cWW
    • History status: Exact match
  • Minor groove platform (5)
  • 75
    97
    • IL_08296.3
    IL_08296.3
    • Basepair signature: cWW-tSH-R-R-cWW
    • History status: Exact match
    84
    98
    • IL_74697.1
    IL_74697.1
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Exact match
  • Decoding loop related (1)
  • 74
    99
    • IL_68506.1
    IL_68506.1
    • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-R-cWW-cWW
    • History status: Exact match
    174
    100
    • IL_54678.4
    IL_54678.4
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Minor groove platform with intercalation (1)
  • 44
    101
    • IL_97697.1
    IL_97697.1
    • Basepair signature: cWW-L-R-L-L-L-L-bif-cWW
    • History status: Exact match
  • Reverse turn (4)
  • 114
    102
    • IL_19954.1
    IL_19954.1
    • Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW
    • History status: Exact match
    124
    103
    • IL_55178.1
    IL_55178.1
    • Basepair signature: cWW-cWW-tWW-cWW
    • History status: Exact match
  • tWW and near cWH (1)
  • Non canonical cWW and near pair (1)
  • Tandem non-canonical cWW pairs (1)
  • tWW and non-canonical cWW (1)
  • 84
    104
    • IL_29346.1
    IL_29346.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
  • Left turn (3)
  • 74
    105
    • IL_80604.1
    IL_80604.1
    • Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-cWW
    • History status: Exact match
  • tWH-tWH-tHW-tHW (3)
  • 144
    106
    • IL_49460.1
    IL_49460.1
    • Basepair signature: cWW-L-R-L-R-L-L-cWW
    • History status: Exact match
    104
    107
    • IL_06136.1
    IL_06136.1
    • Basepair signature: cWW-tSH-L-R-tHS-tHS-cWW
    • History status: Exact match
  • Quadruple sheared (4)
  • 124
    108
    • IL_55953.3
    IL_55953.3
    • Basepair signature: cWW-tSH-tHS-R-L-L-R-cWW
    • History status: Exact match
    124
    109
    • IL_58686.1
    IL_58686.1
    • Basepair signature: cWW-cWW-tSH-cSH-cWW
    • History status: Exact match
  • Multiple bulged bases with near cWW (1)
  • 94
    110
    • IL_88269.3
    IL_88269.3
    • Basepair signature: cWW-tWW-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 6x5 Sarcin-Ricin; G-bulge (3)
  • tSH-tHW-tWW (1)
  • 114
    111
    • IL_38862.1
    IL_38862.1
    • Basepair signature: cWW-tSH-tWH-tHS-cWW
    • History status: Exact match
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (2)
  • tSH-tHW-tHS (2)
  • 104
    112
    • IL_50715.1
    IL_50715.1
    • Basepair signature: cWW-tSH-tHH-L-R-L-R-cSH-L-L-L-R-L-tWW-cWW
    • History status: Exact match
    214
    113
    • IL_81589.1
    IL_81589.1
    • Basepair signature: cWW-L-R-L-L-L-R-tSW-L-cWW
    • History status: Exact match
    134
    114
    • IL_70627.2
    IL_70627.2
    • Basepair signature: cWW-tWH-L-R-cWW
    • History status: Exact match
    83
    115
    • IL_19557.2
    IL_19557.2
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Isolated cWH basepair (1)
  • 53
    116
    • IL_82426.4
    IL_82426.4
    • Basepair signature: cWW-cHW-R-L-cHW-L-cHW-cHW-R-cWW
    • History status: Exact match
    143
    117
    • IL_09129.1
    IL_09129.1
    • Basepair signature: cWW-tWH-tWH-L-R-L-tWW-cWW
    • History status: Exact match
    143
    118
    • IL_75283.2
    IL_75283.2
    • Basepair signature: cWW-L-R-L-L-L-tWH-tWH-L-L-R-tSS-tHS-cWW
    • History status: Exact match
    183
    119
    • IL_87284.1
    IL_87284.1
    • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tWH-tHS (3)
  • 123
    120
    • IL_68574.2
    IL_68574.2
    • Basepair signature: cWW-tSH-tHH-cWW
    • History status: Exact match
    83
    121
    • IL_64900.1
    IL_64900.1
    • Basepair signature: cWW-cWW-tSS-L-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Kink-turn (3)
  • 143
    122
    • IL_75461.3
    IL_75461.3
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    73
    123
    • IL_02349.4
    IL_02349.4
    • Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 8x6 Sarcin-Ricin with bulged A; G-bulge (2)
  • 133
    124
    • IL_34470.2
    IL_34470.2
    • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)
  • 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)
  • 173
    125
    • IL_34739.1
    IL_34739.1
    • Basepair signature: cWW-tWW-tWW-L-R-L-R-L-L-L-R-L-R-L-R-L-R-cWW
    • History status: Exact match
    203
    126
    • IL_24606.1
    IL_24606.1
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
    • History status: Exact match
  • 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)
  • 143
    127
    • IL_65851.2
    IL_65851.2
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS with extra cWW pairs (1)
  • 143
    128
    • IL_18471.1
    IL_18471.1
    • Basepair signature: cWW-cWW-cSH-cWW
    • History status: Exact match
  • Major groove platform with extra cWW (2)
  • 73
    129
    • IL_69440.1
    IL_69440.1
    • Basepair signature: cWW-cSH-tHS-cWW
    • History status: Exact match
    83
    130
    • IL_07144.1
    IL_07144.1
    • Basepair signature: cWW-L-R-L-R-L-L-cWW
    • History status: Exact match
  • Other IL (1)
  • 103
    131
    • IL_18472.2
    IL_18472.2
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: Exact match
  • Symmetric double minor groove platform (1)
  • 83
    132
    • IL_93630.1
    IL_93630.1
    • Basepair signature: cWW-L-R-L-L-L-cWW
    • History status: Exact match
  • C-loop with extra cWW pair (1)
  • 93
    133
    • IL_76319.1
    IL_76319.1
    • Basepair signature: cWW-L-cWS-cWW
    • History status: Exact match
  • Isolated cWS basepair (2)
  • 73
    134
    • IL_44312.1
    IL_44312.1
    • Basepair signature: cWW-tWH-R-cSH-cWW
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (2)
  • 93
    135
    • IL_64181.1
    IL_64181.1
    • Basepair signature: cWW-L-R-cWW-cWW-cWW
    • History status: Exact match
    103
    136
    • IL_74051.1
    IL_74051.1
    • Basepair signature: cWW-tSS-L-tSH-tHS-L-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 113
    137
    • IL_26785.1
    IL_26785.1
    • Basepair signature: cWW-cWW-L-R-R-tSH-tHW-cSH-tHH-tHS-cWW
    • History status: Exact match
  • 10x8 Sarcin-Ricin; G-bulge (3)
  • 183
    138
    • IL_96303.1
    IL_96303.1
    • Basepair signature: cWW-cSH-tHW-L-L-R-L-R-tSW-cWW
    • History status: Exact match
    133
    139
    • IL_30542.2
    IL_30542.2
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: Exact match
    83
    140
    • IL_93830.2
    IL_93830.2
    • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)
  • 143
    141
    • IL_27393.7
    IL_27393.7
    • Basepair signature: cWW-L-L-L-R-cWW
    • History status: Exact match
    83
    142
    • IL_58960.1
    IL_58960.1
    • Basepair signature: cWW-L-L-tWW-L-L-L-cWW
    • History status: Exact match
    113
    143
    • IL_67474.4
    IL_67474.4
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
    63
    144
    • IL_90318.1
    IL_90318.1
    • Basepair signature: cWW-tSH-L-R-L-R-cWW
    • History status: Exact match
  • UAA/GAN with extra pair (3)
  • 103
    145
    • IL_36973.5
    IL_36973.5
    • Basepair signature: cWW-tSH-L-R-R-R-L-L-cWW-cWW
    • History status: Exact match
    142
    146
    • IL_77870.1
    IL_77870.1
    • Basepair signature: cWW-bif-L-L-L-tHS-cWW-cWW
    • History status: Exact match
    132
    147
    • IL_45371.1
    IL_45371.1
    • Basepair signature: cWW-cSW-cWW-cWW
    • History status: Exact match
    82
    148
    • IL_92192.1
    IL_92192.1
    • Basepair signature: cWW-L-L-L-cWW-cWW
    • History status: Exact match
  • Other IL (1)
  • 92
    149
    • IL_01206.1
    IL_01206.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    52
    150
    • IL_14768.1
    IL_14768.1
    • Basepair signature: cWW-cWW-L-R-tHS-cWW-cWW
    • History status: Exact match
    122
    151
    • IL_86929.1
    IL_86929.1
    • Basepair signature: cWW-cWW-tSH-tSH-L-R-cWW
    • History status: Exact match
  • Triple sheared with non-canonical cWW (1)
  • 122
    152
    • IL_28026.1
    IL_28026.1
    • Basepair signature: cWW-tSH-tWH-tSS-tHW-tHH-cWW-cWH
    • History status: Exact match
    142
    153
    • IL_59302.1
    IL_59302.1
    • Basepair signature: cWW-L-R-L-L-cWW
    • History status: Exact match
    92
    154
    • IL_78349.1
    IL_78349.1
    • Basepair signature: cWW-L-R-L-R-L-L-L-cWW-cWW
    • History status: Exact match
    142
    155
    • IL_19724.1
    IL_19724.1
    • Basepair signature: cWW-cSH-R-R-cWW
    • History status: Exact match
    72
    156
    • IL_57343.1
    IL_57343.1
    • Basepair signature: cWW-L-cSS-cSS-R-L-cWW
    • History status: Exact match
    112
    157
    • IL_64879.1
    IL_64879.1
    • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Triple sheared related (2)
  • 112
    158
    • IL_52493.1
    IL_52493.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
    72
    159
    • IL_59423.1
    IL_59423.1
    • Basepair signature: cWW-L-R-R-tHS-cWW
    • History status: Exact match
    92
    160
    • IL_47973.1
    IL_47973.1
    • Basepair signature: cWW-cSH-R-L-L-cWW
    • History status: Exact match
    82
    161
    • IL_52708.1
    IL_52708.1
    • Basepair signature: cWW-tSS-cWW
    • History status: Exact match
    52
    162
    • IL_10207.1
    IL_10207.1
    • Basepair signature: cWW-L-R-L-L-R-L-cWW-cSW-cWW-cSH
    • History status: Exact match
    132
    163
    • IL_15218.1
    IL_15218.1
    • Basepair signature: cWW-L-L-L-R-L-R-L-R-L-cWW
    • History status: Exact match
    132
    164
    • IL_23992.1
    IL_23992.1
    • Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-cWW
    • History status: Exact match
    142
    165
    • IL_37722.1
    IL_37722.1
    • Basepair signature: cWW-cWW-tSH-tWH-tHS-tSS-R-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 142
    166
    • IL_65263.1
    IL_65263.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    72
    167
    • IL_42032.1
    IL_42032.1
    • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
    • History status: Exact match
    112
    168
    • IL_10484.1
    IL_10484.1
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Exact match
  • Double sheared (2)
  • 82
    169
    • IL_73448.1
    IL_73448.1
    • Basepair signature: cWW-L-R-L-tWW-L-R-L-L-cWW
    • History status: Exact match
    132
    170
    • IL_93211.1
    IL_93211.1
    • Basepair signature: cWW-cWW-L-R-cWS-L-cWW
    • History status: Exact match
    102
    171
    • IL_02656.1
    IL_02656.1
    • Basepair signature: cWW-tSH-tHH-L-tHS-cWW
    • History status: Exact match
  • Other IL (1)
  • 112
    172
    • IL_38394.1
    IL_38394.1
    • Basepair signature: cWW-tWH-L-L-R-L-cWW
    • History status: Exact match
  • Stack outside cWW (1)
  • 102
    173
    • IL_58490.1
    IL_58490.1
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
  • Multiple bulged bases (1)
  • 62
    174
    • IL_76195.2
    IL_76195.2
    • Basepair signature: cWW-L-L-cWW
    • History status: Exact match
    62
    175
    • IL_80884.1
    IL_80884.1
    • Basepair signature: cWW-cWW-R-R-R-R-cWW
    • History status: Exact match
    102
    176
    • IL_84251.1
    IL_84251.1
    • Basepair signature: cWW-L-R-tHS-cWW
    • History status: Exact match
    82
    177
    • IL_38634.5
    IL_38634.5
    • Basepair signature: cWW-cWH-tWS-cWW
    • History status: Exact match
  • cWH basepair and non-canonical AC (2)
  • 82
    178
    • IL_30149.1
    IL_30149.1
    • Basepair signature: cWW-L-R-L-R-tWH-L-R-L-L-cWW
    • History status: Exact match
    142
    179
    • IL_60192.1
    IL_60192.1
    • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
    • History status: Exact match
  • Kink-turn (2)
  • 122
    180
    • IL_91549.1
    IL_91549.1
    • Basepair signature: cWW-tSW-L-L-cSW-cWW
    • History status: Exact match
    92
    181
    • IL_38684.1
    IL_38684.1
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Exact match
    72
    182
    • IL_53581.1
    IL_53581.1
    • Basepair signature: cWW-tWW-L-tWH-tWH-tWH-tSS-L-L-L-bif-cWW-tSS-cSS-R-R-cWW
    • History status: Exact match
  • Kink-turn related (2)
  • 222
    183
    • IL_81522.1
    IL_81522.1
    • Basepair signature: cWW-cSH-L-cWS-cWW
    • History status: Exact match
  • Major groove minor groove platform with intercalation; mini C-loop (2)
  • 72
    184
    • IL_91592.1
    IL_91592.1
    • Basepair signature: cWW-L-L-L-L-tHH-cWW
    • History status: Exact match
    102
    185
    • IL_22248.1
    IL_22248.1
    • Basepair signature: cWW-cWW-cSH-L-cWW
    • History status: Exact match
  • Other IL (1)
  • 82
    186
    • IL_34822.1
    IL_34822.1
    • Basepair signature: cWW-tWH-L-R-tHS-L-R-cWW
    • History status: Exact match
    122
    187
    • IL_46559.1
    IL_46559.1
    • Basepair signature: cWW-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    122
    188
    • IL_63797.1
    IL_63797.1
    • Basepair signature: cWW-cWS-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • Major groove outside cWW, minor groove, intercalation pocket (1)
  • 52
    189
    • IL_26728.1
    IL_26728.1
    • Basepair signature: cWW-cSH-R-cWW-cSH-cWW
    • History status: Exact match
    92
    190
    • IL_35728.1
    IL_35728.1
    • Basepair signature: cWW-cWW-tSH-tHW-tHH-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHH-tHS (1)
  • 9x8 Sarcin-Ricin; G-bulge (1)
  • 172
    191
    • IL_93699.1
    IL_93699.1
    • Basepair signature: cWW-cSS-tSS-L-L-tHH-tSS-tHS-tHS-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 132
    192
    • IL_53749.1
    IL_53749.1
    • Basepair signature: cWW-L-L-L-R-L-R-cWW
    • History status: Exact match
    102
    193
    • IL_81631.1
    IL_81631.1
    • Basepair signature: cWW-L-R-cSH-R-tWH-tHS-cWW
    • History status: Exact match
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
  • 122
    194
    • IL_36143.2
    IL_36143.2
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    52
    195
    • IL_53787.1
    IL_53787.1
    • Basepair signature: cWW-L-L-L-R-L-R-L-R-L-R-cWW
    • History status: Exact match
    141
    196
    • IL_00559.1
    IL_00559.1
    • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-cWW-cWW
    • History status: Exact match
    191
    197
    • IL_14397.1
    IL_14397.1
    • Basepair signature: cWW-tWH-tHH-tHS-cWW
    • History status: Exact match
    101
    198
    • IL_23152.1
    IL_23152.1
    • Basepair signature: cWW-L-L-L-R-L-R-L-cWW
    • History status: Exact match
    111
    199
    • IL_47108.1
    IL_47108.1
    • Basepair signature: cWW-tHH-L-R-R-R-cWW
    • History status: Exact match
    101
    200
    • IL_56867.1
    IL_56867.1
    • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
    • History status: Exact match
    131
    201
    • IL_64739.1
    IL_64739.1
    • Basepair signature: cWW-tSH-L-cWW
    • History status: Exact match
    71
    202
    • IL_85652.1
    IL_85652.1
    • Basepair signature: cWW-tSH-L-R-L-R-L-L-cWW
    • History status: Exact match
    121
    203
    • IL_94165.1
    IL_94165.1
    • Basepair signature: cWW-L-R-L-tHS-cWW
    • History status: Exact match
    91
    204
    • IL_04667.1
    IL_04667.1
    • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
    • History status: Exact match
    131
    205
    • IL_39287.1
    IL_39287.1
    • Basepair signature: cWW-tSH-tHS-tSS-L-R-R-R-R-R-cWW
    • History status: Exact match
    151
    206
    • IL_59281.1
    IL_59281.1
    • Basepair signature: cWW-cWW-cSW-cSH-cWW
    • History status: Exact match
    91
    207
    • IL_90346.1
    IL_90346.1
    • Basepair signature: cWW-L-R-R-R-R-cWW
    • History status: Exact match
    91
    208
    • IL_96451.1
    IL_96451.1
    • Basepair signature: cWW-R-cWH-L-L-L-cWW
    • History status: Exact match
    91
    209
    • IL_31504.1
    IL_31504.1
    • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
    • History status: Exact match
    181
    210
    • IL_61300.1
    IL_61300.1
    • Basepair signature: cWW-cSS-L-tHW-tSS-L-L-L-L-L-L-cWW
    • History status: Exact match
    141
    211
    • IL_70801.1
    IL_70801.1
    • Basepair signature: cWW-L-R-R-tWW-cWW-cWW-cWW
    • History status: Exact match
    131
    212
    • IL_64842.1
    IL_64842.1
    • Basepair signature: cWW-L-L-L-tWH-cSH-cWW
    • History status: Exact match
    101
    213
    • IL_74736.1
    IL_74736.1
    • Basepair signature: cWW-tSH-L-R-R-L-cWW
    • History status: Exact match
    91
    214
    • IL_94351.1
    IL_94351.1
    • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
    • History status: Exact match
    111
    215
    • IL_16665.1
    IL_16665.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-cWW
    • History status: Exact match
    111
    216
    • IL_90348.1
    IL_90348.1
    • Basepair signature: cWW-R-R-R-cWW
    • History status: Exact match
    71
    217
    • IL_97253.1
    IL_97253.1
    • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-L-cWW
    • History status: Exact match
    131
    218
    • IL_31890.1
    IL_31890.1
    • Basepair signature: cWW-L-R-R-L-L-cWW
    • History status: Exact match
    91
    219
    • IL_54896.1
    IL_54896.1
    • Basepair signature: cWW-L-L-L-L-L-L-tSS-cWW
    • History status: Exact match
    121
    220
    • IL_92343.1
    IL_92343.1
    • Basepair signature: cWW-L-R-R-R-L-L-cWW
    • History status: Exact match
    101
    221
    • IL_01393.1
    IL_01393.1
    • Basepair signature: cWW-L-L-L-cWW
    • History status: Exact match
    71
    222
    • IL_37629.1
    IL_37629.1
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
  • Stack outside cWW (1)
  • 51
    223
    • IL_47972.1
    IL_47972.1
    • Basepair signature: cWW-L-R-R-R-cWW
    • History status: Exact match
    81
    224
    • IL_94501.1
    IL_94501.1
    • Basepair signature: cWW-cWW-cWW-tHW-cWH-cSH-cWH-cSH-tHS-cWW
    • History status: Exact match
    151
    225
    • IL_04736.1
    IL_04736.1
    • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
    • History status: Exact match
    121
    226
    • IL_28564.1
    IL_28564.1
    • Basepair signature: cWW-L-R-cWW-cWW
    • History status: Exact match
    71
    227
    • IL_80412.1
    IL_80412.1
    • Basepair signature: cWW-R-R-R-R-R-tWS-cWW
    • History status: Exact match
    111
    228
    • IL_19852.1
    IL_19852.1
    • Basepair signature: cWW-tWH-cWH-cWH-cWH-cWW
    • History status: Exact match
    111
    229
    • IL_45488.1
    IL_45488.1
    • Basepair signature: cWW-cWW-L-R-tWH-L-R-cWW
    • History status: Exact match
    121
    230
    • IL_62654.1
    IL_62654.1
    • Basepair signature: cWW-tSH-tHH-tHS-cWW
    • History status: Exact match
  • tSH-tHH-tHS (1)
  • 101
    231
    • IL_23735.1
    IL_23735.1
    • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
    • History status: Exact match
    261
    232
    • IL_87290.1
    IL_87290.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L
    • History status: Exact match
    171
    233
    • IL_94777.1
    IL_94777.1
    • Basepair signature: cWW-cSH-L-R-L-L-R-cWW
    • History status: Exact match
    101
    234
    • IL_41414.1
    IL_41414.1
    • Basepair signature: cWW-cWW-R-R-cSH-R-bif-tWH-R-R-R-R-cWS-cWW
    • History status: Exact match
    211
    235
    • IL_68633.1
    IL_68633.1
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW-cWW
    • History status: Exact match
  • 9x7 Sarcin-Ricin with inserted C; G-bulge (1)
  • 161
    236
    • IL_90720.1
    IL_90720.1
    • Basepair signature: cWW-L-L-tHS-R-cWW
    • History status: Exact match
    91
    237
    • IL_98353.1
    IL_98353.1
    • Basepair signature: cWW-cWS-L-L-cWW
    • History status: Exact match
    81
    238
    • IL_33557.1
    IL_33557.1
    • Basepair signature: cWW-cWW-tHH-L-R-R-R-L-L-L-cWW
    • History status: Exact match
    141
    239
    • IL_62947.1
    IL_62947.1
    • Basepair signature: cWW-cWW-R-cWW-R-cWW-R-cWW-R-L-tSH-L-L-L-L-cWW
    • History status: Exact match
    231
    240
    • IL_93094.1
    IL_93094.1
    • Basepair signature: cWW-tSH-tHH-R-R-R-cWW
    • History status: Exact match
  • Reverse kink-turn (1)
  • 111
    241
    • IL_94878.1
    IL_94878.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    251
    242
    • IL_17765.1
    IL_17765.1
    • Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW
    • History status: Exact match
    141
    243
    • IL_59724.1
    IL_59724.1
    • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
    • History status: Exact match
  • 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)
  • 151
    244
    • IL_69091.1
    IL_69091.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
    • History status: Exact match
    161
    245
    • IL_20245.1
    IL_20245.1
    • Basepair signature: cWW-L-R-R-R-R-L-L-L-L-L-L-L-L-L-L-L-L-cWW-L-R-cWW
    • History status: Exact match
    211
    246
    • IL_84205.1
    IL_84205.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    51
    247
    • IL_15484.1
    IL_15484.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cSH-cWW
    • History status: Exact match
    141
    248
    • IL_24499.1
    IL_24499.1
    • Basepair signature: cWW-L-R-L-R-cWS-L-L-cSH-cWW
    • History status: Exact match
    121
    249
    • IL_87677.1
    IL_87677.1
    • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
  • tWH-tWH-tHW-tHW (1)
  • 121
    250
    • IL_17971.1
    IL_17971.1
    • Basepair signature: cWW-tWW-L-tWW-L-cWW
    • History status: Exact match
    101
    251
    • IL_29509.1
    IL_29509.1
    • Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
    151
    252
    • IL_60171.1
    IL_60171.1
    • Basepair signature: cWW-L-tWH-R-R-R-cWW
    • History status: Exact match
  • Major groove platform; stack outside cWW (1)
  • 81
    253
    • IL_10810.1
    IL_10810.1
    • Basepair signature: cWW-L-cSH-cWS-cWW
    • History status: Exact match
    81
    254
    • IL_20463.1
    IL_20463.1
    • Basepair signature: cWW-L-R-R-R-cWH-R-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)
  • 181
    255
    • IL_46112.1
    IL_46112.1
    • Basepair signature: cWW-L-L-L-L-L-cWW
    • History status: Exact match
    91
    256
    • IL_55896.1
    IL_55896.1
    • Basepair signature: cWW-tSH-tHS-tWS-cWW
    • History status: Exact match
  • tSH-tHS-tWS (1)
  • 101
    257
    • IL_73662.1
    IL_73662.1
    • Basepair signature: cWW-L-L-L-R-L-R-L-R-cWW
    • History status: Exact match
    121
    258
    • IL_88190.1
    IL_88190.1
    • Basepair signature: cWW-L-R-tHS-L-R-L-R-cWW
    • History status: Exact match
    121
    259
    • IL_95811.1
    IL_95811.1
    • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
    • History status: Exact match
  • Vitamin B12 Aptamer (1)
  • 111
    260
    • IL_06300.1
    IL_06300.1
    • Basepair signature: cWW-tSH-L-R-L-cWW
    • History status: Exact match
    91
    261
    • IL_43140.1
    IL_43140.1
    • Basepair signature: cWW-L-cWH-L-L-cWW
    • History status: Exact match
    91
    262
    • IL_11882.1
    IL_11882.1
    • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
    • History status: Exact match
    131
    263
    • IL_21121.1
    IL_21121.1
    • Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW
    • History status: Exact match
    111
    264
    • IL_34780.1
    IL_34780.1
    • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 161
    265
    • IL_46461.1
    IL_46461.1
    • Basepair signature: cWW-L-bif-L-cWW-cWW-cWW-L-cWW-tSW-L-L-L-L-L-L-L-L-tHH-tHS-cWW
    • History status: Exact match
    281
    266
    • IL_73759.1
    IL_73759.1
    • Basepair signature: cWW-cSH-tHS-cWH-cHW-cWW
    • History status: Exact match
    91
    267
    • IL_84409.1
    IL_84409.1
    • Basepair signature: cWW-tSS-tHH-tWW-cSS-tWH-tSW-cWS-cHW-cSS-cSH-cWH-cHW-cSH-tWH-R-cWW
    • History status: Exact match
    231
    268
    • IL_93585.1
    IL_93585.1
    • Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW
    • History status: Exact match
    111
    269
    • IL_04105.1
    IL_04105.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-L-L-R-cWW
    • History status: Exact match
    161
    270
    • IL_15978.1
    IL_15978.1
    • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
    • History status: Exact match
    101
    271
    • IL_95961.1
    IL_95961.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: Exact match
    81
    272
    • IL_30174.1
    IL_30174.1
    • Basepair signature: cWW-cSH-cSH-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • 61
    273
    • IL_43166.1
    IL_43166.1
    • Basepair signature: cWW-L-R-L-L-L-R-L-R-cWW
    • History status: Exact match
    121
    274
    • IL_69573.1
    IL_69573.1
    • Basepair signature: cWW-L-R-tWH-L-R-R-R-R-L-L-tWW-cWW
    • History status: Exact match
    171
    275
    • IL_56105.1
    IL_56105.1
    • Basepair signature: cWW-tHS-cSH-tHS-cWW
    • History status: Exact match
    81
    276
    • IL_84665.1
    IL_84665.1
    • Basepair signature: cWW-L-cSW-L-L-R-L-R-L-R-L-cWW
    • History status: Exact match
    151
    277
    • IL_16073.1
    IL_16073.1
    • Basepair signature: cWW-L-L-L-L-L-R-cWW-cWW
    • History status: Exact match
    121
    278
    • IL_95993.1
    IL_95993.1
    • Basepair signature: cWW-R-tSS-tWW-tWW-cWW
    • History status: Exact match
  • Kink-turn related (1)
  • 111
    279
    • IL_19023.1
    IL_19023.1
    • Basepair signature: cWW-cHW-L-L-L-L-L-L-L-L-cWW
    • History status: Exact match
    141
    280
    • IL_30441.1
    IL_30441.1
    • Basepair signature: cWW-cSH-tHW-L-L-R-L-L-R-tSW-cWW
    • History status: Exact match
    141
    281
    • IL_53601.1
    IL_53601.1
    • Basepair signature: cWW-tHW-tHS-cWW-cWW
    • History status: Exact match
    101
    282
    • IL_70096.1
    IL_70096.1
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Exact match
    71
    283
    • IL_91710.1
    IL_91710.1
    • Basepair signature: cWW-L-L-L-tWH-R-L-cWW
    • History status: Exact match
    111
    284
    • IL_12750.1
    IL_12750.1
    • Basepair signature: cWW-L-R-cWW-L-R-R-R-R-L-L-cWW
    • History status: Exact match
    151
    285
    • IL_22436.1
    IL_22436.1
    • Basepair signature: cWW-L-cSS-tWH-tHW-cWW-cWW
    • History status: Exact match
  • Kink-turn related (1)
  • 111
    286
    • IL_46732.1
    IL_46732.1
    • Basepair signature: cWW-R-R-tHS-cWW
    • History status: Exact match
    81
    287
    • IL_85222.1
    IL_85222.1
    • Basepair signature: cWW-L-R-L-R-L-L-L-cWW
    • History status: Exact match
    111
    288
    • IL_51101.1
    IL_51101.1
    • Basepair signature: cWW-R-cWW
    • History status: Exact match
    51
    289
    • IL_58819.1
    IL_58819.1
    • Basepair signature: cWW-L-R-R-tWH-L-tSS-tHW-R-tHH-cWW-cWW
    • History status: Exact match
    171
    290
    • IL_89055.1
    IL_89055.1
    • Basepair signature: cWW-cWW-L-R-R-L-L-L-L-L-cWW-cWW
    • History status: Exact match
    161
    291
    • IL_08001.1
    IL_08001.1
    • Basepair signature: cWW-L-R-tSH-L-R-L-R-L-R-L-R-L-L-cWW
    • History status: Exact match
  • tSH-tHW-tHH-tHS (1)
  • 181
    292
    • IL_19048.1
    IL_19048.1
    • Basepair signature: cWW-bif-bif-L-L-cSW-cWW-cSH-R-cWW
    • History status: Exact match
    141
    293
    • IL_44325.1
    IL_44325.1
    • Basepair signature: cWW-cWH-R-cWW
    • History status: Exact match
    61
    294
    • IL_61242.1
    IL_61242.1
    • Basepair signature: cWW-cWW-L-R-cWW-cWW
    • History status: Exact match
    101
    295
    • IL_70149.1
    IL_70149.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    61
    296
    • IL_91920.1
    IL_91920.1
    • Basepair signature: cWW-cWW-tHH-cWW
    • History status: Exact match
    81
    297
    • IL_13394.1
    IL_13394.1
    • Basepair signature: cWW-L-R-R-R-R-tSS-R-R-R-R-R-R-R-R-L-L-L-cWW
    • History status: Exact match
    221
    298
    • IL_22821.1
    IL_22821.1
    • Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW
    • History status: Exact match
  • Pseudoknot (1)
  • 171
    299
    • IL_74184.1
    IL_74184.1
    • Basepair signature: cWW-L-L-L-L-L-tHS-cWW
    • History status: Exact match
    111
    300
    • IL_85630.1
    IL_85630.1
    • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
    • History status: Exact match
    151
    301
    • IL_38969.1
    IL_38969.1
    • Basepair signature: cWW-L-R-L-L-L-L-L-cWW
    • History status: Exact match
    91
    302
    • IL_51191.1
    IL_51191.1
    • Basepair signature: cWW-L-R-R-R-R-cWW
    • History status: Exact match
    91
    303
    • IL_77827.1
    IL_77827.1
    • Basepair signature: cWW-tSS-R-L-L-R-L-tHH-L-R-L-R-L-R-L-R-L-R-L-cSH-R-R-L-R-L-R-cWW-R-cWW-R-L-R-L-R-L-R-R-cWW
    • History status: Exact match
    451
    304
    • IL_96371.1
    IL_96371.1
    • Basepair signature: cWW-tHH-cWW
    • History status: Exact match
    61

    Coloring options:


    Exact match 304;

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