#Varna 2DMotifNtsSize
1
  • IL_97217.2
IL_97217.2
  • Basepair signature: cWW-cWW
  • History status: Exact match
5234
2
  • IL_47174.2
IL_47174.2
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: 16S h34 ILa : Part of larger motif
6200
3
  • IL_39199.2
IL_39199.2
  • Basepair signature: cWW-tHS-cSH-cWW
  • History status: Exact match
  • Name: Hoogsteen-edge Platform, Single bulged base
555
4
  • IL_41766.2
IL_41766.2
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW pairs (Not AU or GC)
849
5
  • IL_56465.2
IL_56465.2
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
  • Name: Single, unpaired intercalated base, consensus A
545
6
  • IL_44540.2
IL_44540.2
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: Exact match
  • Name: Sugar-edge, 1-base platform, consensus tHS
543
7
  • IL_87904.2
IL_87904.2
  • Basepair signature: cWW-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Triple sheared
1031
8
  • IL_06390.1
IL_06390.1
  • Basepair signature: cWW-cWH-cWW
  • History status: Exact match
  • Name: cWH basepair with syn base
625
9
  • IL_13959.2
IL_13959.2
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double Sheared (tSH-tHS)
824
10
  • IL_93424.2
IL_93424.2
  • Basepair signature: cWW-tSH-R-tHW-cWW
  • History status: Exact match
  • Name: tSH-inserted-tHW
922
11
  • IL_32390.2
IL_32390.2
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 16S h19 IL and 23S H41 IL
521
12
  • IL_65553.2
IL_65553.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-tHW-cWW-tHS-cWW
  • History status: Exact match
  • Name: Kink-turn
1321
13
  • IL_73276.1
IL_73276.1
  • Basepair signature: cWW-tWH-cSH-L-cWS-cWW
  • History status: Exact match
  • Name: C-loop
720
14
  • IL_55938.2
IL_55938.2
  • Basepair signature: cWW-cWW-cSH-cWW
  • History status: Exact match
  • Name: LSU Helix 89 (H89) IL2. cSH Platform.
719
15
  • IL_92027.2
IL_92027.2
  • Basepair signature: cWW-cSW-cWW
  • History status: Exact match
  • Name: 16S h21 S8 binding site
617
16
  • IL_85647.2
IL_85647.2
  • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin parent motif with 15 Nts
1516
17
  • IL_06429.1
IL_06429.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 16S h19 IL and 23S H41 IL | 1 or 2 bulged bases
516
18
  • IL_31555.2
IL_31555.2
  • Basepair signature: cWW-cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: 16S decoding site
915
19
  • IL_24982.3
IL_24982.3
  • Basepair signature: cWW-tSH-tHW-tHS-cWW
  • History status: Exact match
  • Name: SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
1015
20
  • IL_94430.2
IL_94430.2
  • Basepair signature: cWW-cWS-cWW
  • History status: Exact match
  • Name: 16S h32-h33-h34 3WJ
514
21
  • IL_49493.2
IL_49493.2
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin Parent Motif - bacterial LSU H95 IL
1314
22
  • IL_46648.1
IL_46648.1
  • Basepair signature: cWW-tHS-cWW
  • History status: Exact match
  • Name: 23S H91 IL | Single-Base Intercalation Site
511
23
  • IL_21304.1
IL_21304.1
  • Basepair signature: cWW-tHS-cWW
  • History status: Exact match
  • Name: Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
711
24
  • IL_40090.2
IL_40090.2
  • Basepair signature: cWW-cWS-cWW
  • History status: Exact match
  • Name: 16S h34 ILa : Part of larger motif
611
25
  • IL_27618.2
IL_27618.2
  • Basepair signature: cWW-cWW-cSH-cWW
  • History status: Exact match
  • Name: 23S H73 ILa : Part of larger Motif
711
26
  • IL_24546.2
IL_24546.2
  • Basepair signature: cWW-L-L-L-cSH-L-cWW
  • History status: Exact match
  • Name: 23S H41 IL and 16S h18 IL : Has large bulge on one side
1010
27
  • IL_58291.2
IL_58291.2
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
  • Name: Recurrent Sub-motif found in junctions
69
28
  • IL_47444.2
IL_47444.2
  • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: Exact match
  • Name: SRP Loop E-like motif
129
29
  • IL_92114.2
IL_92114.2
  • Basepair signature: cWW-R-tWH-cSH-cWW
  • History status: Exact match
  • Name: GAAA loop receptor "platform" motif
99
30
  • IL_02809.1
IL_02809.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
88
31
  • IL_92321.2
IL_92321.2
  • Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
128
32
  • IL_90459.2
IL_90459.2
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: cWW AG or UU
68
33
  • IL_86357.2
IL_86357.2
  • Basepair signature: cWW-tWW-cWW
  • History status: Exact match
  • Name: LSU Helix 61 IL2
67
34
  • IL_83451.2
IL_83451.2
  • Basepair signature: cWW-cWW-cSW-cWW-cSH-cWW
  • History status: Exact match
  • Name: cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
97
35
  • IL_73000.2
IL_73000.2
  • Basepair signature: cWW-cSW-cSH-cWW
  • History status: Exact match
  • Name: cHS-cWS
67
36
  • IL_89088.1
IL_89088.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 16S h19 IL and 23S H41 IL
56
37
  • IL_72158.2
IL_72158.2
  • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
  • History status: Exact match
  • Name: LSU Helix 62 (H62) IL
136
38
  • IL_70237.3
IL_70237.3
  • Basepair signature: cWW-L-L-cWS-tSW-R-R-cWW
  • History status: Exact match
106
39
  • IL_25230.2
IL_25230.2
  • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
  • History status: Exact match
  • Name: Bacterial 5S rRNA Loop E
186
40
  • IL_97057.2
IL_97057.2
  • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
  • History status: Exact match
116
41
  • IL_10007.1
IL_10007.1
  • Basepair signature: cWW-tSH-L-cWW
  • History status: Exact match
  • Name: Single sheared with bulged bases
76
42
  • IL_44067.2
IL_44067.2
  • Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
146
43
  • IL_08926.1
IL_08926.1
  • Basepair signature: cWW-cHH-cWW
  • History status: Exact match
  • Name: 23S H91 IL
56
44
  • IL_53635.2
IL_53635.2
  • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
  • History status: Exact match
  • Name: LSU Helix 32 (H32) IL
136
45
  • IL_13069.2
IL_13069.2
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: LSU 3WJ H32-H33-H35A
86
46
  • IL_24022.2
IL_24022.2
  • Basepair signature: cWW-tWH-cSH-tSH-tWH-tHS-cWW
  • History status: Exact match
106
47
  • IL_92484.1
IL_92484.1
  • Basepair signature: cWW-cSH-R-R-cWW
  • History status: Exact match
85
48
  • IL_79083.2
IL_79083.2
  • Basepair signature: cWW-tSH-L-R-L-tHH-cWW
  • History status: Exact match
115
49
  • IL_78732.3
IL_78732.3
  • Basepair signature: cWW-cWH-tWS-cWW
  • History status: Exact match
  • Name: Double S-turn motif
95
50
  • IL_82188.1
IL_82188.1
  • Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
  • History status: Exact match
  • Name: LSU H68 IL from H.m.
145
51
  • IL_40387.2
IL_40387.2
  • Basepair signature: cWW-cWW-cSH-R-cWW
  • History status: Exact match
85
52
  • IL_71288.1
IL_71288.1
  • Basepair signature: cWW-cSW-R-cWW
  • History status: Exact match
  • Name: Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
95
53
  • IL_07911.1
IL_07911.1
  • Basepair signature: cWW-cWW-tSH-cWW
  • History status: Exact match
75
54
  • IL_80179.2
IL_80179.2
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
55
55
  • IL_77263.1
IL_77263.1
  • Basepair signature: cWW-tSH-tHS-tSS-R-cWW
  • History status: Exact match
  • Name: Kink-turn from U4
115
56
  • IL_45262.2
IL_45262.2
  • Basepair signature: cWW-L-L-L-tHS-cWW
  • History status: Exact match
95
57
  • IL_01239.1
IL_01239.1
  • Basepair signature: cWW-L-R-R-cWW
  • History status: Exact match
75
58
  • IL_02359.2
IL_02359.2
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
  • History status: Exact match
165
59
  • IL_64184.2
IL_64184.2
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
74
60
  • IL_22732.1
IL_22732.1
  • Basepair signature: cWW-tSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted-tHS
94
61
  • IL_21333.1
IL_21333.1
  • Basepair signature: cWW-tWH-tHS-cWW
  • History status: Exact match
  • Name: tSH-tHW-bulge
94
62
  • IL_47758.1
IL_47758.1
  • Basepair signature: cWW-cHW-cWW-cWW
  • History status: Exact match
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
84
63
  • IL_39526.2
IL_39526.2
  • Basepair signature: cWW-L-L-L-L-L-cWW
  • History status: Exact match
94
64
  • IL_38807.2
IL_38807.2
  • Basepair signature: cWW-tWH-L-tHW-cSH-cWW
  • History status: Exact match
124
65
  • IL_98591.2
IL_98591.2
  • Basepair signature: cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
  • History status: Exact match
164
66
  • IL_28572.1
IL_28572.1
  • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
  • History status: Exact match
  • Name: 16S h18 kink-turn like motif
164
67
  • IL_98556.1
IL_98556.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
84
68
  • IL_31066.2
IL_31066.2
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
  • Name: SSU Helix 44 (h44) extension
74
69
  • IL_62661.2
IL_62661.2
  • Basepair signature: cWW-tSH-L-R-tHS-cWW
  • History status: Exact match
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
104
70
  • IL_95652.2
IL_95652.2
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: SSU Helix 27 (h27) IL Sarcin-Ricin motif
143
71
  • IL_16252.2
IL_16252.2
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
  • Name: 23S H91 IL
53
72
  • IL_82563.1
IL_82563.1
  • Basepair signature: cWW-R-tWH-R-R-R-cWW
  • History status: Exact match
  • Name: Thi-box riboswitch T-loop
103
73
  • IL_71565.1
IL_71565.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
53
74
  • IL_95150.2
IL_95150.2
  • Basepair signature: cWW-L-tHS-cWW
  • History status: Exact match
83
75
  • IL_53774.1
IL_53774.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
  • Name: Single sheared with bulged bases
83
76
  • IL_58586.2
IL_58586.2
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
63
77
  • IL_34363.1
IL_34363.1
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
  • History status: Exact match
  • Name: Kink-turn from 23S H42
143
78
  • IL_34156.2
IL_34156.2
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
  • Name: cWW AG or UU
63
79
  • IL_30840.1
IL_30840.1
  • Basepair signature: cWW-cWW-L-cWW-cWW-cWW
  • History status: Exact match
113
80
  • IL_89028.1
IL_89028.1
  • Basepair signature: cWW-L-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Part of H71 junction in 23S rRNA E.c. H.m. and Tetrahymena
163
81
  • IL_43946.1
IL_43946.1
  • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
  • History status: Exact match
123
82
  • IL_34628.2
IL_34628.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
133
83
  • IL_23262.3
IL_23262.3
  • Basepair signature: cWW-R-R-R-tSW-L-L-cWW
  • History status: Exact match
113
84
  • IL_15840.1
IL_15840.1
  • Basepair signature: cWW-tSH-R-tHS-tHS-cWW
  • History status: Exact match
113
85
  • IL_62499.2
IL_62499.2
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
63
86
  • IL_45808.1
IL_45808.1
  • Basepair signature: cWW-L-R-tHS-cWW
  • History status: Exact match
93
87
  • IL_52173.1
IL_52173.1
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: Exact match
93
88
  • IL_79955.2
IL_79955.2
  • Basepair signature: cWW-cWW-cWW-cWW-cSW-cWW
  • History status: Exact match
  • Name: SSU Helix (23) h23 IL1
123
89
  • IL_80494.2
IL_80494.2
  • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
  • History status: Exact match
  • Name: LSU H58 IL2 H.m.
123
90
  • IL_09348.2
IL_09348.2
  • Basepair signature: cWW-L-cWW-cWW
  • History status: Exact match
73
91
  • IL_98421.1
IL_98421.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
73
92
  • IL_37053.1
IL_37053.1
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
  • History status: Exact match
  • Name: Kink-turn from 23S H58
133
93
  • IL_75447.1
IL_75447.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
73
94
  • IL_16166.1
IL_16166.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
52
95
  • IL_01054.1
IL_01054.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
82
96
  • IL_55287.1
IL_55287.1
  • Basepair signature: cWW-L-R-R-L-L-L-cWW
  • History status: Exact match
112
97
  • IL_37197.1
IL_37197.1
  • Basepair signature: cWW-L-L-L-tHS-cWW-cWW
  • History status: Exact match
112
98
  • IL_87548.1
IL_87548.1
  • Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
  • History status: Exact match
112
99
  • IL_45794.1
IL_45794.1
  • Basepair signature: cWW-L-R-R-tWW-tWW-cWW
  • History status: Exact match
142
100
  • IL_78674.1
IL_78674.1
  • Basepair signature: cWW-L-R-R-L-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
92
101
  • IL_23414.1
IL_23414.1
  • Basepair signature: cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
  • History status: Exact match
212
102
  • IL_97833.1
IL_97833.1
  • Basepair signature: cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: Exact match
142
103
  • IL_37406.1
IL_37406.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
82
104
  • IL_28942.1
IL_28942.1
  • Basepair signature: cWW-L-tWH-R-R-R-cWW
  • History status: Exact match
92
105
  • IL_40892.1
IL_40892.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
112
106
  • IL_12211.1
IL_12211.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW-cWW
  • History status: Exact match
132
107
  • IL_21495.1
IL_21495.1
  • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
  • History status: Exact match
152
108
  • IL_76095.3
IL_76095.3
  • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW
  • History status: Exact match
  • Name: Motif from Hairpin Ribozyme
202
109
  • IL_48285.1
IL_48285.1
  • Basepair signature: cWW-cWW-L-R-L-cWW
  • History status: Exact match
  • Name: Leadzyme Motif
92
110
  • IL_82831.2
IL_82831.2
  • Basepair signature: cWW-tSH-L-R-R-R-R-R-L-cWW
  • History status: Exact match
  • Name: Kink-turn from 16S H23
132
111
  • IL_14023.1
IL_14023.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
62
112
  • IL_65137.1
IL_65137.1
  • Basepair signature: cWW-L-cSS-tWH-tHW-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn like motif in Group I Intron
132
113
  • IL_25174.1
IL_25174.1
  • Basepair signature: cWW-R-cWW-cWW
  • History status: Exact match
72
114
  • IL_98566.1
IL_98566.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
82
115
  • IL_74291.1
IL_74291.1
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
62
116
  • IL_94744.1
IL_94744.1
  • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with extra cWW GA pair
172
117
  • IL_81441.1
IL_81441.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
62
118
  • IL_16330.1
IL_16330.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
282
119
  • IL_52940.1
IL_52940.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-L-tWW-cWW
  • History status: Exact match
142
120
  • IL_99575.1
IL_99575.1
  • Basepair signature: cWW-L-L-L-tWH-L-L-L-cWW
  • History status: Exact match
132
121
  • IL_80093.1
IL_80093.1
  • Basepair signature: cWW-L-R-tHH-tHS-cWW
  • History status: Exact match
112
122
  • IL_74876.1
IL_74876.1
  • Basepair signature: cWW-tWH-L-R-tHS-cWW
  • History status: Exact match
112
123
  • IL_87173.1
IL_87173.1
  • Basepair signature: cWW-L-cSH-cWW
  • History status: Exact match
62
124
  • IL_91026.1
IL_91026.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
102
125
  • IL_12269.1
IL_12269.1
  • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
  • History status: Exact match
182
126
  • IL_12068.1
IL_12068.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
52
127
  • IL_78744.1
IL_78744.1
  • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Quadruple Sheared (tSH-tSH-tHS-tHS)
122
128
  • IL_92459.1
IL_92459.1
  • Basepair signature: cWW-L-R-R-L-tHS-L-R-cWW
  • History status: Exact match
122
129
  • IL_16415.1
IL_16415.1
  • Basepair signature: cWW-L-R-tSH-L-R-tHS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 23 (h23) Kink-turn T. thermophilus
152
130
  • IL_90057.1
IL_90057.1
  • Basepair signature: cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW
  • History status: Exact match
252
131
  • IL_25271.1
IL_25271.1
  • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL E.c. and Yeast
152
132
  • IL_70280.1
IL_70280.1
  • Basepair signature: cWW-cWW-L-R-R-L-cWW
  • History status: Exact match
  • Name: Double sheared with wobble cWW.
102
133
  • IL_57785.5
IL_57785.5
  • Basepair signature: cWW-cSW-tHS-cWW
  • History status: Exact match
  • Name: SSU Decoding Site -- Human. Bulge-cSW-tHS
92
134
  • IL_00998.1
IL_00998.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
82
135
  • IL_41397.2
IL_41397.2
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
  • Name: LSU Helix 96 (H96) IL2
102
136
  • IL_31707.1
IL_31707.1
  • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
  • History status: Exact match
  • Name: Vitamin B12 aptamer
112
137
  • IL_43933.1
IL_43933.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: Exact match
102
138
  • IL_50521.1
IL_50521.1
  • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
  • History status: Exact match
152
139
  • IL_09882.1
IL_09882.1
  • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
  • History status: Exact match
122
140
  • IL_46435.1
IL_46435.1
  • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
  • History status: Exact match
132
141
  • IL_52509.1
IL_52509.1
  • Basepair signature: cWW-cWW-L-L-tHS-cWW
  • History status: Exact match
101
142
  • IL_12233.1
IL_12233.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
151
143
  • IL_05221.1
IL_05221.1
  • Basepair signature: cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW
  • History status: Exact match
171
144
  • IL_88367.1
IL_88367.1
  • Basepair signature: cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW
  • History status: Exact match
151
145
  • IL_75688.1
IL_75688.1
  • Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S of D.r.
161
146
  • IL_06306.1
IL_06306.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-cWW
  • History status: Exact match
141
147
  • IL_56513.1
IL_56513.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
91
148
  • IL_41791.1
IL_41791.1
  • Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW
  • History status: Exact match
121
149
  • IL_12507.1
IL_12507.1
  • Basepair signature: cWW-cSS-cSS-R-R-L-L-L-cWW
  • History status: Exact match
131
150
  • IL_52958.1
IL_52958.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
101
151
  • IL_26241.1
IL_26241.1
  • Basepair signature: cWW-tHW-tHS-cWW-cWW
  • History status: Exact match
101
152
  • IL_53323.1
IL_53323.1
  • Basepair signature: cWW-L-R-R-L-cWW-cWW
  • History status: Exact match
101
153
  • IL_40527.1
IL_40527.1
  • Basepair signature: cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
161
154
  • IL_40845.1
IL_40845.1
  • Basepair signature: cWW-cSW-cSH-R-cWW
  • History status: Exact match
81
155
  • IL_88865.1
IL_88865.1
  • Basepair signature: cWW-L-cSH-L-cWW
  • History status: Exact match
91
156
  • IL_26868.1
IL_26868.1
  • Basepair signature: cWW-tSH-tHW-tWW-cWW
  • History status: Exact match
111
157
  • IL_65788.1
IL_65788.1
  • Basepair signature: cWW-R-R-cWW-cWW-cWW
  • History status: Exact match
101
158
  • IL_13682.1
IL_13682.1
  • Basepair signature: cWW-cSH-tHW-cWW
  • History status: Exact match
91
159
  • IL_03110.1
IL_03110.1
  • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
  • History status: Exact match
131
160
  • IL_11869.1
IL_11869.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
91
161
  • IL_81398.1
IL_81398.1
  • Basepair signature: cWW-L-R-cWW-cWW-cWW
  • History status: Exact match
101
162
  • IL_21421.1
IL_21421.1
  • Basepair signature: cWW-L-R-tSH-tSS-tSS-tWH-tSH-R-R-R-R-R-R-cWW
  • History status: Exact match
201
163
  • IL_63952.1
IL_63952.1
  • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
  • History status: Exact match
131
164
  • IL_80505.1
IL_80505.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-cWW
  • History status: Exact match
111
165
  • IL_25739.1
IL_25739.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
  • Name: M-Box Riboswitch
81
166
  • IL_41849.1
IL_41849.1
  • Basepair signature: cWW-tHH-L-tWH-tHS-cWW
  • History status: Exact match
111
167
  • IL_98924.1
IL_98924.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: Exact match
101
168
  • IL_41139.1
IL_41139.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
81
169
  • IL_11302.1
IL_11302.1
  • Basepair signature: cWW-L-R-R-tHW-L-cWW
  • History status: Exact match
101
170
  • IL_32080.1
IL_32080.1
  • Basepair signature: cWW-bif-R-R-cWW
  • History status: Exact match
101
171
  • IL_98655.1
IL_98655.1
  • Basepair signature: cWW-L-cHW-L-L-tHH-tSW-L-cWW
  • History status: Exact match
  • Name: Part of H71 Junction in 26S rRNA from Yeast
161
172
  • IL_86981.1
IL_86981.1
  • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
151
173
  • IL_43316.1
IL_43316.1
  • Basepair signature: cWW-tSH-L-L-tHH-cWW
  • History status: Exact match
111
174
  • IL_82113.1
IL_82113.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
  • History status: Exact match
171
175
  • IL_58454.1
IL_58454.1
  • Basepair signature: cWW-tSH-L-R-R-cWW
  • History status: Exact match
101
176
  • IL_82650.1
IL_82650.1
  • Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW
  • History status: Exact match
131
177
  • IL_20775.1
IL_20775.1
  • Basepair signature: cWW-R-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted
81
178
  • IL_61730.1
IL_61730.1
  • Basepair signature: cWW-L-R-L-tHW-L-L-cWW
  • History status: Exact match
111
179
  • IL_71685.1
IL_71685.1
  • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-like with an intercalated basepair
141
180
  • IL_96260.1
IL_96260.1
  • Basepair signature: cWW-L-R-L-L-cWW
  • History status: Exact match
91
181
  • IL_66744.1
IL_66744.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
  • Name: SSU Helix 21 (h21) IL2 E.coli
141
182
  • IL_75415.1
IL_75415.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Pseudo-knot forming internal loop
101
183
  • IL_39324.1
IL_39324.1
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
  • History status: Exact match
201
184
  • IL_31241.1
IL_31241.1
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
71
185
  • IL_56779.1
IL_56779.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: Exact match
91
186
  • IL_18755.1
IL_18755.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
71
187
  • IL_25307.1
IL_25307.1
  • Basepair signature: cWW-tHH-L-R-L-cWW
  • History status: Exact match
91
188
  • IL_55649.1
IL_55649.1
  • Basepair signature: cWW-tWH-L-R-cWW
  • History status: Exact match
91
189
  • IL_06808.1
IL_06808.1
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double sheared (tSH-tSH) one bulged base.
91
190
  • IL_78809.1
IL_78809.1
  • Basepair signature: cWW-bif-R-cWW
  • History status: Exact match
61
191
  • IL_23639.1
IL_23639.1
  • Basepair signature: cWW-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: tWH-tHS-L-cWW
101
192
  • IL_91089.1
IL_91089.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
81
193
  • IL_85805.1
IL_85805.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
91
194
  • IL_02690.1
IL_02690.1
  • Basepair signature: cWW-tSS-L-cSS-R-L-L-L-L-cWW
  • History status: Exact match
131
195
  • IL_91904.1
IL_91904.1
  • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
  • History status: Exact match
171
196
  • IL_13942.1
IL_13942.1
  • Basepair signature: cWW-L-R-L-L-L-cWW
  • History status: Exact match
91
197
  • IL_25082.1
IL_25082.1
  • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
  • History status: Exact match
181
198
  • IL_82601.1
IL_82601.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW water-inserted CU pairs
81
199
  • IL_92280.1
IL_92280.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
  • History status: Exact match
121
200
  • IL_91379.1
IL_91379.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-cWW
  • History status: Exact match
121
201
  • IL_07675.1
IL_07675.1
  • Basepair signature: cWW-tHH-tHS-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
91
202
  • IL_54576.1
IL_54576.1
  • Basepair signature: cWW-bif-L-cWW
  • History status: Exact match
81
203
  • IL_37990.1
IL_37990.1
  • Basepair signature: cWW-tWW-L-tWW-L-cWW
  • History status: Exact match
141
204
  • IL_23448.1
IL_23448.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
61
205
  • IL_83250.1
IL_83250.1
  • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ T.th.
111
206
  • IL_88403.1
IL_88403.1
  • Basepair signature: cWW-cSH-L-cSW-cWW-R-R-cWW
  • History status: Exact match
111
207
  • IL_12486.1
IL_12486.1
  • Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW-cWW
  • History status: Exact match
141
208
  • IL_03741.1
IL_03741.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
  • History status: Exact match
151
209
  • IL_07375.1
IL_07375.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
81
210
  • IL_09333.1
IL_09333.1
  • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL T. thermophilus
131
211
  • IL_31006.1
IL_31006.1
  • Basepair signature: cWW-tSH-tHW-L-bif-cWW
  • History status: Exact match
  • Name: tSH-tHW-L-bif-cWW
121
212
  • IL_24143.1
IL_24143.1
  • Basepair signature: cWW-tSS-L-R-cSS-R-L-L-L-L-cWW
  • History status: Exact match
  • Name: Yeast 18S
131
213
  • IL_17682.1
IL_17682.1
  • Basepair signature: cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif from Eukaryal LSU Helix 11
171
214
  • IL_02835.1
IL_02835.1
  • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
131
215
  • IL_22858.1
IL_22858.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
81
216
  • IL_97073.1
IL_97073.1
  • Basepair signature: cWW-R-R-R-tHS-cWW
  • History status: Exact match
91
217
  • IL_60643.1
IL_60643.1
  • Basepair signature: cWW-tHH-cWW
  • History status: Exact match
81
218
  • IL_57977.1
IL_57977.1
  • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
  • History status: Exact match
111
219
  • IL_86059.1
IL_86059.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
71
220
  • IL_06468.1
IL_06468.1
  • Basepair signature: cWW-tWH-R-R-R-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ E.c.
111
221
  • IL_54450.1
IL_54450.1
  • Basepair signature: cWW-L-R-cWW-cWW
  • History status: Exact match
81
222
  • IL_91078.1
IL_91078.1
  • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
  • History status: Exact match
141
223
  • IL_02957.1
IL_02957.1
  • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
  • History status: Exact match
261
224
  • IL_21254.1
IL_21254.1
  • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 11 (h11) IL Kink-turn T. thermophilus
141
225
  • IL_76263.1
IL_76263.1
  • Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
191
226
  • IL_27243.1
IL_27243.1
  • Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW
  • History status: Exact match
151
227
  • IL_54954.1
IL_54954.1
  • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
171
228
  • IL_15205.1
IL_15205.1
  • Basepair signature: cWW-cWW-L-cSW-L-tHS-cWW
  • History status: Exact match
131
229
  • IL_05462.1
IL_05462.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
71
230
  • IL_62352.1
IL_62352.1
  • Basepair signature: cWW-cSH-tWH-cSH-cWS-cWW
  • History status: Exact match
71
231
  • IL_46306.1
IL_46306.1
  • Basepair signature: cWW-L-R-R-cWW-cWW
  • History status: Exact match
101
232
  • IL_47687.1
IL_47687.1
  • Basepair signature: cWW-tWH-tWH-tWH-L-R-L-tWW-cWW
  • History status: Exact match
141
233
  • IL_22579.1
IL_22579.1
  • Basepair signature: cWW-L-R-R-R-R-L-cWW
  • History status: Exact match
101
234
  • IL_95939.1
IL_95939.1
  • Basepair signature: cWW-R-tWH-tHS-cWW
  • History status: Exact match
111
235
  • IL_89794.1
IL_89794.1
  • Basepair signature: cWW-tSH-tSH-tSS-tSS-R-cWW
  • History status: Exact match
141
236
  • IL_61723.1
IL_61723.1
  • Basepair signature: cWW-L-R-tHW-cWW
  • History status: Exact match
111
237
  • IL_76486.1
IL_76486.1
  • Basepair signature: cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with syn G
151
238
  • IL_83920.1
IL_83920.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: Exact match
71
239
  • IL_80652.1
IL_80652.1
  • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
  • History status: Exact match
141
240
  • IL_77014.1
IL_77014.1
  • Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW
  • History status: Exact match
111
241
  • IL_26971.1
IL_26971.1
  • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
  • History status: Exact match
111
242
  • IL_53423.1
IL_53423.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
81
243
  • IL_90880.1
IL_90880.1
  • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
  • History status: Exact match
231
244
  • IL_68827.1
IL_68827.1
  • Basepair signature: cWW-tSH-tHH-R-R-R-cWW
  • History status: Exact match
  • Name: Reverse Kink-Turn
111
245
  • IL_53988.1
IL_53988.1
  • Basepair signature: cWW-cSW-L-L-tHS-cWS-cWW
  • History status: Exact match
131
246
  • IL_29949.1
IL_29949.1
  • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
  • History status: Exact match
131
247
  • IL_97842.1
IL_97842.1
  • Basepair signature: cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW
  • History status: Exact match
161
248
  • IL_30390.1
IL_30390.1
  • Basepair signature: cWW-cSW-L-R-tSH-tHS-cWW
  • History status: Exact match
121
249
  • IL_31754.1
IL_31754.1
  • Basepair signature: cWW-cSW-tHW-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin H95 23S rRNA E.c.
131
250
  • IL_71942.1
IL_71942.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
101
251
  • IL_59529.1
IL_59529.1
  • Basepair signature: cWW-tWH-tHH-tHS-cWW
  • History status: Exact match
111
252
  • IL_55934.1
IL_55934.1
  • Basepair signature: cWW-L-L-tSH-L-R-bif-L-cWW-cWW
  • History status: Exact match
  • Name: kink-turn-like
161
253
  • IL_67735.1
IL_67735.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
91
254
  • IL_17603.1
IL_17603.1
  • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
  • History status: Exact match
121
255
  • IL_97191.1
IL_97191.1
  • Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with cWW UU instead of tSH basepair.
131
256
  • IL_41009.1
IL_41009.1
  • Basepair signature: cWW-L-L-L-tSS-tHW-L-R-cWW
  • History status: Exact match
131
257
  • IL_37347.1
IL_37347.1
  • Basepair signature: cWW-cHW-L-tHW-tHW-tHW-bif-cWW
  • History status: Exact match
161
258
  • IL_85510.1
IL_85510.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
111
259
  • IL_52752.1
IL_52752.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
71
260
  • IL_37715.1
IL_37715.1
  • Basepair signature: cWW-L-R-R-R-L-L-L-L-tSS-R-R-R-cWW
  • History status: Exact match
171
261
  • IL_75328.1
IL_75328.1
  • Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW
  • History status: Exact match
141
262
  • IL_25181.1
IL_25181.1
  • Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW
  • History status: Exact match
131
263
  • IL_47457.1
IL_47457.1
  • Basepair signature: cWW-L-R-cHW-L-L-cSH-L-cWW
  • History status: Exact match
161



Exact match 263;