#Varna 2DMotifNtsSize
1
  • IL_97217.6
IL_97217.6
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 1-3 bulged nucleotides, same chain | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
5239
2
  • IL_47174.6
IL_47174.6
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: cWW AG or water inserted cWW Y-Y.
6201
3
  • IL_39199.3
IL_39199.3
  • Basepair signature: cWW-tHS-cSH-cWW
  • History status: Exact match
  • Name: Hoogsteen-edge Platform, Single bulged base
554
4
  • IL_41766.3
IL_41766.3
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW pairs (Not AU or GC)
849
5
  • IL_56465.3
IL_56465.3
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
  • Name: Single, unpaired intercalated base, consensus A
546
6
  • IL_44540.3
IL_44540.3
  • Basepair signature: cWW-cSH-tHS-cWW
  • History status: Exact match
  • Name: Sugar-edge, 1-base platform, consensus tHS
543
7
  • IL_87904.4
IL_87904.4
  • Basepair signature: cWW-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Triple sheared (tSH-tHS-tHS) no inserted bases
1031
8
  • IL_06390.3
IL_06390.3
  • Basepair signature: cWW-cWH-cWW
  • History status: Exact match
  • Name: cWH basepair with syn base
626
9
  • IL_13959.3
IL_13959.3
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double Sheared (tSH-tHS)
824
10
  • IL_65553.5
IL_65553.5
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW
  • History status: Exact match
  • Name: Kink-turn
1322
11
  • IL_93424.3
IL_93424.3
  • Basepair signature: cWW-tSH-R-tHW-cWW
  • History status: Exact match
  • Name: tSH-inserted-tHW
922
12
  • IL_28947.1
IL_28947.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 23S H91 IL | cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
521
13
  • IL_73276.3
IL_73276.3
  • Basepair signature: cWW-tSW-tWH-cSH-cWS-cWW
  • History status: Updated, 1 parent
  • Name: C-loop
721
14
  • IL_55938.3
IL_55938.3
  • Basepair signature: cWW-cSH-cWW-cWW
  • History status: Exact match
  • Name: LSU Helix 89 (H89) IL2. cSH Platform.
718
15
  • IL_92027.3
IL_92027.3
  • Basepair signature: cWW-cSW-cWW
  • History status: Exact match
  • Name: 16S h21 S8 binding site
617
16
  • IL_24982.4
IL_24982.4
  • Basepair signature: cWW-tSH-tHW-tHS-cWW
  • History status: Exact match
  • Name: SSU helix 20 (h20) IL. Prokaryal 5S Loop E Sub-motif
1016
17
  • IL_85647.3
IL_85647.3
  • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin parent motif with 15 Nts
1516
18
  • IL_94430.4
IL_94430.4
  • Basepair signature: cWW-cWS-cWW
  • History status: Exact match
  • Name: 16S h32-h33-h34 3WJ
515
19
  • IL_31555.3
IL_31555.3
  • Basepair signature: cWW-cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Tandem sheared with inserted, unpaired purine.
915
20
  • IL_92109.1
IL_92109.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: cWW-bulge-cWW | 16S h19 IL and 23S H41 IL | cWW-bulge-cWW
515
21
  • IL_49493.3
IL_49493.3
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin Parent Motif - bacterial LSU H95 IL
1314
22
  • IL_46648.2
IL_46648.2
  • Basepair signature: cWW-tHS-cWW
  • History status: Exact match
  • Name: 23S H91 IL | Single-Base Intercalation Site
511
23
  • IL_40090.3
IL_40090.3
  • Basepair signature: cWW-cWS-cWW
  • History status: Exact match
  • Name: 16S h34 ILa : Part of larger motif
611
24
  • IL_21304.2
IL_21304.2
  • Basepair signature: cWW-tHS-cWW
  • History status: Exact match
  • Name: Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
611
25
  • IL_43124.1
IL_43124.1
  • Basepair signature: cWW-tSH-cSH-cWW
  • History status: Exact match
  • Name: 23S H73 ILa : Part of larger Motif | Single sheared with bulged bases
711
26
  • IL_24546.3
IL_24546.3
  • Basepair signature: cWW-L-L-L-cSH-L-cWW
  • History status: Exact match
  • Name: 23S H41 IL and 16S h18 IL : Has large bulge on one side
1010
27
  • IL_02809.2
IL_02809.2
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
89
28
  • IL_90459.3
IL_90459.3
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
  • Name: cWW AG or UU
69
29
  • IL_47444.3
IL_47444.3
  • Basepair signature: cWW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: Exact match
  • Name: SRP Loop E-like motif
129
30
  • IL_58291.3
IL_58291.3
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
  • Name: Recurrent Sub-motif found in junctions
69
31
  • IL_92114.3
IL_92114.3
  • Basepair signature: cWW-cSH-tHW-L-cWW
  • History status: Exact match
  • Name: GAAA loop receptor "platform" motif
99
32
  • IL_73000.2
IL_73000.2
  • Basepair signature: cWW-cSW-cSH-cWW
  • History status: Exact match
  • Name: cHS-cWS
67
33
  • IL_83451.2
IL_83451.2
  • Basepair signature: cWW-cWW-cSW-cWW-cSH-cWW
  • History status: Exact match
  • Name: cHS-cWS triple and Wobble. SSU Helix 44 (h44) IL1.
97
34
  • IL_92321.3
IL_92321.3
  • Basepair signature: cWW-cWW-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Triple sheared (tSH-tHS-tHS) with cWW Wobble base flanking motif
127
35
  • IL_13069.3
IL_13069.3
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: LSU 3WJ H32-H33-H35A
86
36
  • IL_54420.1
IL_54420.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
86
37
  • IL_39585.1
IL_39585.1
  • Basepair signature: cWW-tSH-tWH-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
106
38
  • IL_72158.3
IL_72158.3
  • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
  • History status: Exact match
  • Name: LSU Helix 62 (H62) IL
136
39
  • IL_25230.3
IL_25230.3
  • Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
  • History status: Exact match
  • Name: Bacterial 5S rRNA Loop E
186
40
  • IL_90133.2
IL_90133.2
  • Basepair signature: cWW-bif-cWW-tSH-cWW
  • History status: Exact match
76
41
  • IL_97057.3
IL_97057.3
  • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
  • History status: Exact match
116
42
  • IL_70237.3
IL_70237.3
  • Basepair signature: cWW-L-L-cWS-tSW-R-R-cWW
  • History status: Exact match
106
43
  • IL_53635.3
IL_53635.3
  • Basepair signature: cWW-R-tHW-tHW-tWW-cWW
  • History status: Exact match
  • Name: LSU Helix 32 (H32) IL
136
44
  • IL_44067.3
IL_44067.3
  • Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Quadruple sheared (tSH-tHS-tHS-tHS). LSU Helix 2 (H2).
146
45
  • IL_08926.2
IL_08926.2
  • Basepair signature: cWW-cHH-cWW
  • History status: Exact match
  • Name: 23S H91 IL
55
46
  • IL_25300.1
IL_25300.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: 16S h19 IL and 23S H41 IL
55
47
  • IL_02359.3
IL_02359.3
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
  • History status: Exact match
165
48
  • IL_45262.3
IL_45262.3
  • Basepair signature: cWW-L-L-L-tHS-cWW
  • History status: Exact match
95
49
  • IL_86357.3
IL_86357.3
  • Basepair signature: cWW-tWW-cWW
  • History status: Exact match
  • Name: LSU Helix 61 IL2
65
50
  • IL_92484.1
IL_92484.1
  • Basepair signature: cWW-cSH-R-R-cWW
  • History status: Exact match
85
51
  • IL_79083.3
IL_79083.3
  • Basepair signature: cWW-tSH-L-R-L-tHH-cWW
  • History status: Exact match
115
52
  • IL_78732.3
IL_78732.3
  • Basepair signature: cWW-cWH-tWS-cWW
  • History status: Exact match
  • Name: Double S-turn motif
95
53
  • IL_82188.1
IL_82188.1
  • Basepair signature: cWW-tSH-L-R-R-R-R-L-L-L-cWW
  • History status: Exact match
  • Name: LSU H68 IL from H.m.
145
54
  • IL_71288.1
IL_71288.1
  • Basepair signature: cWW-cSW-R-cWW
  • History status: Exact match
  • Name: Leadzyme Motif. LSU H101 IL2. SSU Decoding site.
95
55
  • IL_77263.1
IL_77263.1
  • Basepair signature: cWW-tSH-tHS-tSS-R-cWW
  • History status: Exact match
  • Name: Kink-turn from U4
115
56
  • IL_16207.1
IL_16207.1
  • Basepair signature: cWW-R-tHS-cWW
  • History status: Exact match
  • Name: Single sheared with bulged bases
85
57
  • IL_47758.1
IL_47758.1
  • Basepair signature: cWW-cHW-cWW-cWW
  • History status: Exact match
  • Name: REV element IL with syn G | Tandem cWW pairs (Not AU or GC)
84
58
  • IL_22732.1
IL_22732.1
  • Basepair signature: cWW-tSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted-tHS
94
59
  • IL_16166.3
IL_16166.3
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
  • Name: 23S H91 IL
54
60
  • IL_28572.1
IL_28572.1
  • Basepair signature: cWW-tWH-cSW-L-R-R-L-tHS-cWW
  • History status: Exact match
  • Name: 16S h18 kink-turn like motif
164
61
  • IL_21333.2
IL_21333.2
  • Basepair signature: cWW-tWH-tHS-cWW
  • History status: Exact match
  • Name: tSH-tHW-bulge
94
62
  • IL_38807.3
IL_38807.3
  • Basepair signature: cWW-tWH-L-tHW-cSH-cWW
  • History status: Exact match
124
63
  • IL_39526.4
IL_39526.4
  • Basepair signature: cWW-L-L-L-L-L-cWW
  • History status: Exact match
94
64
  • IL_34363.2
IL_34363.2
  • Basepair signature: cWW-cSS-tSS-L-tSH-tSS-L-R-R-L-cWW
  • History status: Exact match
  • Name: Kink-turn from 23S H42
144
65
  • IL_98591.3
IL_98591.3
  • Basepair signature: cWW-cSS-R-tSS-tWW-tHH-tHS-cWW
  • History status: Exact match
164
66
  • IL_93568.2
IL_93568.2
  • Basepair signature: cWW-tSH-tHS-L-R-R-L-cWW
  • History status: Exact match
  • Name: Triple Sheared (tSH-tHS-tHS) with wobble cWW.
124
67
  • IL_94403.1
IL_94403.1
  • Basepair signature: cWW-L-L-tWH-L-L-L-cWW
  • History status: New id, 2 parents
  • Name: LSU H77
124
68
  • IL_08559.1
IL_08559.1
  • Basepair signature: cWW-cWW-cSH-R-cWW
  • History status: Exact match
  • Name: LSU Helix 89 (H89) IL2
84
69
  • IL_31066.2
IL_31066.2
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
  • Name: SSU Helix 44 (h44) extension
74
70
  • IL_42251.1
IL_42251.1
  • Basepair signature: cWW-L-cSH-cWW
  • History status: Exact match
64
71
  • IL_01080.1
IL_01080.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
74
72
  • IL_95652.2
IL_95652.2
  • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: SSU Helix 27 (h27) IL Sarcin-Ricin motif
143
73
  • IL_37053.1
IL_37053.1
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-L-R-cWW
  • History status: Exact match
  • Name: Kink-turn from 23S H58
133
74
  • IL_95150.3
IL_95150.3
  • Basepair signature: cWW-cHW-tHS-cWW
  • History status: Exact match
83
75
  • IL_05723.1
IL_05723.1
  • Basepair signature: cWW-R-cSH-tWH-tHS-cWW
  • History status: Exact match
103
76
  • IL_75447.1
IL_75447.1
  • Basepair signature: cWW-cWW-cWW
  • History status: Exact match
73
77
  • IL_71565.3
IL_71565.3
  • Basepair signature: cWW-cWW
  • History status: Updated, 1 parent
53
78
  • IL_82563.1
IL_82563.1
  • Basepair signature: cWW-R-tWH-R-R-R-cWW
  • History status: Exact match
  • Name: Thi-box riboswitch T-loop
103
79
  • IL_34628.2
IL_34628.2
  • Basepair signature: cWW-tSS-L-tSH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
133
80
  • IL_58586.2
IL_58586.2
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
63
81
  • IL_74876.2
IL_74876.2
  • Basepair signature: cWW-tWH-L-R-tHS-cWW
  • History status: Exact match
  • Name: Double-sheared with two unpaired, stacked As. LSU Helix 68 IL4.
103
82
  • IL_80348.1
IL_80348.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
  • Name: 23S H91 IL
53
83
  • IL_34156.6
IL_34156.6
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
  • Name: cWW AG or UU
63
84
  • IL_62499.6
IL_62499.6
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
63
85
  • IL_89028.5
IL_89028.5
  • Basepair signature: cWW-L-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
163
86
  • IL_30840.1
IL_30840.1
  • Basepair signature: cWW-cWW-L-cWW-cWW-cWW
  • History status: Exact match
113
87
  • IL_98421.3
IL_98421.3
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 12 (h12) IL
73
88
  • IL_52173.1
IL_52173.1
  • Basepair signature: cWW-L-R-R-R-L-cWW
  • History status: Exact match
93
89
  • IL_43946.1
IL_43946.1
  • Basepair signature: cWW-tSH-tSS-tSS-R-R-R-R-cWW
  • History status: Exact match
123
90
  • IL_79955.2
IL_79955.2
  • Basepair signature: cWW-cWW-cWW-cWW-cSW-cWW
  • History status: Exact match
  • Name: SSU Helix (23) h23 IL1
123
91
  • IL_92267.1
IL_92267.1
  • Basepair signature: cWW-cWW-cWS-cSH-cWW
  • History status: Exact match
  • Name: 23S H73 ILa : Part of larger Motif
73
92
  • IL_48918.2
IL_48918.2
  • Basepair signature: cWW-tSH-tSH-tHS-tSS-R-cWW
  • History status: Exact match
  • Name: Kink-turn variant
133
93
  • IL_10647.1
IL_10647.1
  • Basepair signature: cWW-L-R-tHS-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
93
94
  • IL_80494.2
IL_80494.2
  • Basepair signature: cWW-tWH-L-R-tHS-bif-cWW
  • History status: Exact match
  • Name: LSU H58 IL2 H.m.
123
95
  • IL_09520.2
IL_09520.2
  • Basepair signature: cWW-L-cWW-cWW
  • History status: Exact match
  • Name: Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW
73
96
  • IL_56077.1
IL_56077.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
53
97
  • IL_87548.1
IL_87548.1
  • Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
  • History status: Exact match
112
98
  • IL_09882.1
IL_09882.1
  • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
  • History status: Exact match
122
99
  • IL_00998.1
IL_00998.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
82
100
  • IL_94744.1
IL_94744.1
  • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with extra cWW GA pair
172
101
  • IL_49550.1
IL_49550.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
102
102
  • IL_90057.1
IL_90057.1
  • Basepair signature: cWW-tSS-L-L-cSS-tWH-tSW-cWS-cSS-tWS-cSH-cWH-cHW-cSH-R-R-cWW
  • History status: Exact match
252
103
  • IL_57785.5
IL_57785.5
  • Basepair signature: cWW-cSW-tHS-cWW
  • History status: Exact match
  • Name: SSU Decoding Site -- Human. Bulge-cSW-tHS
92
104
  • IL_70280.1
IL_70280.1
  • Basepair signature: cWW-cWW-L-R-R-L-cWW
  • History status: Exact match
  • Name: Double sheared with wobble cWW.
102
105
  • IL_46435.1
IL_46435.1
  • Basepair signature: cWW-L-L-L-L-L-L-L-L-L-cWW
  • History status: Exact match
132
106
  • IL_01054.1
IL_01054.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
82
107
  • IL_69536.1
IL_69536.1
  • Basepair signature: cWW-tSH-R-R-cWW
  • History status: Exact match
  • Name: LSU Helix 96 (H96) IL2
102
108
  • IL_23414.1
IL_23414.1
  • Basepair signature: cWW-L-R-R-R-cSH-R-bif-tWH-R-R-R-R-R-L-cWW
  • History status: Exact match
212
109
  • IL_37197.1
IL_37197.1
  • Basepair signature: cWW-L-L-L-tHS-cWW-cWW
  • History status: Exact match
112
110
  • IL_45794.1
IL_45794.1
  • Basepair signature: cWW-L-R-R-tWW-tWW-cWW
  • History status: Exact match
142
111
  • IL_16252.3
IL_16252.3
  • Basepair signature: cWW-L-R-R-cWW
  • History status: Exact match
  • Name: 23S H91 IL
102
112
  • IL_19898.1
IL_19898.1
  • Basepair signature: cWW-L-R-R-cWW
  • History status: Exact match
72
113
  • IL_09901.1
IL_09901.1
  • Basepair signature: cWW-L-R-R-L-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
92
114
  • IL_24358.1
IL_24358.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
62
115
  • IL_27892.1
IL_27892.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
52
116
  • IL_37406.1
IL_37406.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
82
117
  • IL_40892.1
IL_40892.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
112
118
  • IL_65137.1
IL_65137.1
  • Basepair signature: cWW-L-cSS-tWH-tHW-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn like motif in Group I Intron
132
119
  • IL_97833.1
IL_97833.1
  • Basepair signature: cWW-cSW-tSH-tWH-tHW-tHS-cWW-cWW
  • History status: Exact match
142
120
  • IL_96446.1
IL_96446.1
  • Basepair signature: cWW-R-R-tWH-L-R-cWW
  • History status: Exact match
112
121
  • IL_12211.1
IL_12211.1
  • Basepair signature: cWW-L-R-R-R-L-L-cWW-cWW
  • History status: Exact match
132
122
  • IL_21495.1
IL_21495.1
  • Basepair signature: cWW-L-R-R-R-tHW-tHW-bif-cWW
  • History status: Exact match
152
123
  • IL_76095.3
IL_76095.3
  • Basepair signature: cWW-cWW-tSH-R-tHW-tHW-tWH-L-cWW-cWW
  • History status: Exact match
  • Name: Motif from Hairpin Ribozyme
202
124
  • IL_98566.1
IL_98566.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
82
125
  • IL_16330.1
IL_16330.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
282
126
  • IL_52940.1
IL_52940.1
  • Basepair signature: cWW-L-R-R-R-R-L-L-L-tWW-cWW
  • History status: Exact match
142
127
  • IL_09348.5
IL_09348.5
  • Basepair signature: cWW-cWW-L-R-L-cWW
  • History status: Exact match
  • Name: Leadzyme Motif. SSU Decoding site motif, extended. | cWW-L-cWW-cWW
92
128
  • IL_09587.1
IL_09587.1
  • Basepair signature: cWW-cWW-L-R-R-L-L-cWW
  • History status: Exact match
112
129
  • IL_88180.1
IL_88180.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
  • Name: cWW-bulge-cWW
52
130
  • IL_33925.1
IL_33925.1
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
62
131
  • IL_28942.1
IL_28942.1
  • Basepair signature: cWW-L-tWH-R-R-R-cWW
  • History status: Exact match
92
132
  • IL_78744.1
IL_78744.1
  • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
  • History status: Exact match
  • Name: Quadruple Sheared (tSH-tSH-tHS-tHS)
122
133
  • IL_23262.4
IL_23262.4
  • Basepair signature: cWW-R-R-R-tSW-L-cWW
  • History status: Exact match
112
134
  • IL_91273.1
IL_91273.1
  • Basepair signature: cWW-L-tSS-cWW
  • History status: Exact match
92
135
  • IL_16415.1
IL_16415.1
  • Basepair signature: cWW-L-R-tSH-L-R-tHS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 23 (h23) Kink-turn T. thermophilus
152
136
  • IL_80093.1
IL_80093.1
  • Basepair signature: cWW-L-R-tHH-tHS-cWW
  • History status: Exact match
112
137
  • IL_31707.1
IL_31707.1
  • Basepair signature: cWW-L-L-L-cWW-L-bif-cWW
  • History status: Exact match
  • Name: Vitamin B12 aptamer
112
138
  • IL_15840.2
IL_15840.2
  • Basepair signature: cWW-tSH-tSH-L-R-L-cWW
  • History status: Exact match
  • Name: Triple Sheared with unpaired, inserted A
112
139
  • IL_50521.1
IL_50521.1
  • Basepair signature: cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
  • History status: Exact match
152
140
  • IL_11751.1
IL_11751.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
72
141
  • IL_77076.1
IL_77076.1
  • Basepair signature: cWW-tSH-tSS-tSS-tWH-tWH-R-R-R-R-R-R-cWW
  • History status: Exact match
182
142
  • IL_25271.1
IL_25271.1
  • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL E.c. and Yeast
152
143
  • IL_55287.1
IL_55287.1
  • Basepair signature: cWW-L-R-R-L-L-L-cWW
  • History status: Exact match
112
144
  • IL_07300.1
IL_07300.1
  • Basepair signature: cWW-cSH-L-cWW-cWW
  • History status: Exact match
92
145
  • IL_33964.1
IL_33964.1
  • Basepair signature: cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
  • History status: Exact match
232
146
  • IL_97191.1
IL_97191.1
  • Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with cWW UU instead of tSH basepair.
131
147
  • IL_05221.1
IL_05221.1
  • Basepair signature: cWW-cWW-bif-tHW-cWH-tSW-cSH-cWH-cSH-tHS-cWW
  • History status: Exact match
171
148
  • IL_31754.1
IL_31754.1
  • Basepair signature: cWW-cSW-tHW-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin H95 23S rRNA E.c.
131
149
  • IL_13682.1
IL_13682.1
  • Basepair signature: cWW-cSH-tHW-cWW
  • History status: Exact match
91
150
  • IL_25181.1
IL_25181.1
  • Basepair signature: cWW-cWW-L-R-R-tHW-bif-cWW
  • History status: Exact match
131
151
  • IL_60649.1
IL_60649.1
  • Basepair signature: cWW-cSS-L-L-L-tSS-tHW-L-R-cWW
  • History status: Exact match
  • Name: Kink-turn
131
152
  • IL_06306.1
IL_06306.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-R-L-cWW
  • History status: Exact match
141
153
  • IL_17603.1
IL_17603.1
  • Basepair signature: cWW-tSH-R-tHH-tHS-cWW
  • History status: Exact match
121
154
  • IL_47732.1
IL_47732.1
  • Basepair signature: cWW-L-R-cWW
  • History status: Exact match
91
155
  • IL_63952.1
IL_63952.1
  • Basepair signature: cWW-L-R-R-tHW-tHW-L-R-cWW
  • History status: Exact match
131
156
  • IL_27243.1
IL_27243.1
  • Basepair signature: cWW-cSS-cWH-tSS-cWH-R-tWH-R-cWW
  • History status: Exact match
151
157
  • IL_53323.1
IL_53323.1
  • Basepair signature: cWW-L-R-R-L-cWW-cWW
  • History status: Exact match
101
158
  • IL_85510.1
IL_85510.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
111
159
  • IL_40845.1
IL_40845.1
  • Basepair signature: cWW-cSW-cSH-R-cWW
  • History status: Exact match
81
160
  • IL_77296.1
IL_77296.1
  • Basepair signature: cWW-R-R-R-R-R-R-R-R-R-R-cWW
  • History status: Exact match
151
161
  • IL_37715.1
IL_37715.1
  • Basepair signature: cWW-L-R-R-R-L-L-L-L-tSS-R-R-R-cWW
  • History status: Exact match
171
162
  • IL_83856.1
IL_83856.1
  • Basepair signature: cWW-cWW-tWW-tHS-cWW-cWW
  • History status: Exact match
121
163
  • IL_15674.1
IL_15674.1
  • Basepair signature: cWW-L-R-cHW-L-L-cSH-L-cWW
  • History status: Exact match
  • Name: Part of Helix 71 (H71) junction in 23S rRNA E.c. H.m. and Tetrahymena | Part of H71 junction in 23S rRNA from T.th.
161
164
  • IL_30354.1
IL_30354.1
  • Basepair signature: cWW-R-R-cWW
  • History status: Exact match
71
165
  • IL_41791.1
IL_41791.1
  • Basepair signature: cWW-tSW-tWH-tSW-cSH-cWS-R-R-cWW-cWW
  • History status: Exact match
121
166
  • IL_12507.1
IL_12507.1
  • Basepair signature: cWW-cSS-cSS-R-R-L-L-L-cWW
  • History status: Exact match
131
167
  • IL_52958.1
IL_52958.1
  • Basepair signature: cWW-L-R-R-L-L-cWW
  • History status: Exact match
101
168
  • IL_61730.1
IL_61730.1
  • Basepair signature: cWW-L-R-L-tHW-L-L-cWW
  • History status: Exact match
111
169
  • IL_98924.1
IL_98924.1
  • Basepair signature: cWW-L-L-L-cWW-cWW
  • History status: Exact match
101
170
  • IL_88367.1
IL_88367.1
  • Basepair signature: cWW-bif-R-cSH-tWH-tHS-L-R-tSH-cWW
  • History status: Exact match
151
171
  • IL_26868.1
IL_26868.1
  • Basepair signature: cWW-tSH-tHW-tWW-cWW
  • History status: Exact match
111
172
  • IL_52509.1
IL_52509.1
  • Basepair signature: cWW-cWW-L-L-tHS-cWW
  • History status: Exact match
101
173
  • IL_75415.1
IL_75415.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
  • Name: Pseudo-knot forming internal loop
101
174
  • IL_03282.1
IL_03282.1
  • Basepair signature: cWW-tHW-tHS-cWW-cWW
  • History status: Exact match
101
175
  • IL_81398.1
IL_81398.1
  • Basepair signature: cWW-L-R-cWW-cWW-cWW
  • History status: Exact match
101
176
  • IL_56513.1
IL_56513.1
  • Basepair signature: cWW-L-cWW
  • History status: Exact match
91
177
  • IL_46721.1
IL_46721.1
  • Basepair signature: cWW-R-R-R-tSW-L-cWW
  • History status: Exact match
111
178
  • IL_80505.1
IL_80505.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-cWW
  • History status: Exact match
111
179
  • IL_78809.1
IL_78809.1
  • Basepair signature: cWW-bif-R-cWW
  • History status: Exact match
61
180
  • IL_71685.1
IL_71685.1
  • Basepair signature: cWW-cWW-bif-R-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-like with an intercalated basepair
141
181
  • IL_40527.1
IL_40527.1
  • Basepair signature: cWW-L-R-tSS-L-tSH-L-R-L-cWW-cWW
  • History status: Exact match
  • Name: Kink-turn
161
182
  • IL_88865.1
IL_88865.1
  • Basepair signature: cWW-L-cSH-L-cWW
  • History status: Exact match
91
183
  • IL_11302.1
IL_11302.1
  • Basepair signature: cWW-L-R-R-tHW-L-cWW
  • History status: Exact match
101
184
  • IL_98655.1
IL_98655.1
  • Basepair signature: cWW-L-cHW-L-L-tHH-tSW-L-cWW
  • History status: Exact match
  • Name: Part of H71 Junction in 26S rRNA from Yeast
161
185
  • IL_94973.1
IL_94973.1
  • Basepair signature: cWW-L-R-L-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin from Group II Intron with inserted base and poor modeling:
141
186
  • IL_03110.1
IL_03110.1
  • Basepair signature: cWW-tSH-L-L-L-tHS-cWW-cWW
  • History status: Exact match
131
187
  • IL_82113.1
IL_82113.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
  • History status: Exact match
171
188
  • IL_21421.1
IL_21421.1
  • Basepair signature: cWW-L-R-tSH-tSS-tSS-tWH-tSH-R-R-R-R-R-R-cWW
  • History status: Exact match
201
189
  • IL_82650.1
IL_82650.1
  • Basepair signature: cWW-cWS-tSH-tHS-L-R-L-cWW
  • History status: Exact match
131
190
  • IL_54576.1
IL_54576.1
  • Basepair signature: cWW-bif-L-cWW
  • History status: Exact match
81
191
  • IL_23639.1
IL_23639.1
  • Basepair signature: cWW-tWH-tHS-L-cWW
  • History status: Exact match
  • Name: tWH-tHS-L-cWW
101
192
  • IL_41139.1
IL_41139.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
81
193
  • IL_85805.1
IL_85805.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
91
194
  • IL_66744.1
IL_66744.1
  • Basepair signature: cWW-L-R-R-L-L-L-L-cWW-cWW
  • History status: Exact match
  • Name: SSU Helix 21 (h21) IL2 E.coli
141
195
  • IL_11778.1
IL_11778.1
  • Basepair signature: cWW-R-R-R-cWW
  • History status: Exact match
81
196
  • IL_03741.1
IL_03741.1
  • Basepair signature: cWW-cWW-L-R-R-R-R-R-L-tHS-cWW
  • History status: Exact match
151
197
  • IL_57285.1
IL_57285.1
  • Basepair signature: cWW-L-L-tWW-L-L-L-cWS-cWW
  • History status: Exact match
131
198
  • IL_09333.1
IL_09333.1
  • Basepair signature: cWW-tWH-tWH-tHW-tHW-cWW
  • History status: Exact match
  • Name: SSU Helix 8 (h8) IL T. thermophilus
131
199
  • IL_86981.1
IL_86981.1
  • Basepair signature: cWW-bif-tSH-tHW-cSH-tHH-bif-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with CC BIfurcated pair. H.m. LSU H18.
151
200
  • IL_43316.1
IL_43316.1
  • Basepair signature: cWW-tSH-L-L-tHH-cWW
  • History status: Exact match
111
201
  • IL_65788.1
IL_65788.1
  • Basepair signature: cWW-R-R-cWW-cWW-cWW
  • History status: Exact match
101
202
  • IL_25082.1
IL_25082.1
  • Basepair signature: cWW-L-R-R-L-L-tSH-tSS-cWW-cWW-cWW
  • History status: Exact match
181
203
  • IL_28468.1
IL_28468.1
  • Basepair signature: cWW-L-R-R-R-cWW
  • History status: Exact match
  • Name: Single sheared with bulged bases
81
204
  • IL_25307.1
IL_25307.1
  • Basepair signature: cWW-tHH-L-R-L-cWW
  • History status: Exact match
91
205
  • IL_55649.1
IL_55649.1
  • Basepair signature: cWW-tWH-L-R-cWW
  • History status: Exact match
91
206
  • IL_37990.1
IL_37990.1
  • Basepair signature: cWW-tWW-L-tWW-L-cWW
  • History status: Exact match
141
207
  • IL_34868.1
IL_34868.1
  • Basepair signature: cWW-L-R-L-L-cWW
  • History status: Exact match
  • Name: LSU Eukaryal Helix 96 (H96) IL1
91
208
  • IL_83250.1
IL_83250.1
  • Basepair signature: cWW-tWH-R-R-R-cSH-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ T.th.
111
209
  • IL_59934.1
IL_59934.1
  • Basepair signature: cWW-tSH-tWH-tHS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 23 (h23) Kink-turn E. coli
131
210
  • IL_20775.1
IL_20775.1
  • Basepair signature: cWW-R-tHS-cWW
  • History status: Exact match
  • Name: tSH-inserted
81
211
  • IL_91078.1
IL_91078.1
  • Basepair signature: cWW-tSW-L-R-R-L-tWS-cWW
  • History status: Exact match
141
212
  • IL_91904.1
IL_91904.1
  • Basepair signature: cWW-L-R-R-L-L-cSS-L-cWW-cWW
  • History status: Exact match
171
213
  • IL_21254.1
IL_21254.1
  • Basepair signature: cWW-tWH-cWW-tHS-tSS-R-R-cWW
  • History status: Exact match
  • Name: SSU Helix 11 (h11) IL Kink-turn T. thermophilus
141
214
  • IL_39324.1
IL_39324.1
  • Basepair signature: cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW-cWW
  • History status: Exact match
201
215
  • IL_03931.1
IL_03931.1
  • Basepair signature: cWW-cWH-cWW
  • History status: Exact match
  • Name: 16S h19 IL and 23S H41 IL
61
216
  • IL_13434.1
IL_13434.1
  • Basepair signature: cWW-tSS-L-R-cSS-R-L-L-L-L-cWW
  • History status: Exact match
131
217
  • IL_58454.1
IL_58454.1
  • Basepair signature: cWW-tSH-L-R-R-cWW
  • History status: Exact match
101
218
  • IL_91379.1
IL_91379.1
  • Basepair signature: cWW-L-R-R-R-R-R-R-L-cWW
  • History status: Exact match
121
219
  • IL_95774.1
IL_95774.1
  • Basepair signature: cWW-tHH-tHS-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
91
220
  • IL_91089.1
IL_91089.1
  • Basepair signature: cWW-L-L-L-L-cWW
  • History status: Exact match
81
221
  • IL_06808.1
IL_06808.1
  • Basepair signature: cWW-tSH-tHS-cWW
  • History status: Exact match
  • Name: Double sheared (tSH-tSH) one bulged base.
91
222
  • IL_09491.1
IL_09491.1
  • Basepair signature: cWW-L-L-L-cWW
  • History status: Exact match
81
223
  • IL_27668.1
IL_27668.1
  • Basepair signature: cWW-L-L-L-L-L-tHS-cWW
  • History status: Exact match
121
224
  • IL_31006.1
IL_31006.1
  • Basepair signature: cWW-tSH-tHW-L-bif-cWW
  • History status: Exact match
  • Name: tSH-tHW-L-bif-cWW
121
225
  • IL_54954.1
IL_54954.1
  • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-Ricin with extra tSH UA basepair. Yeast LSU H11.
171
226
  • IL_64589.1
IL_64589.1
  • Basepair signature: cWW-L-R-L-cWW
  • History status: Exact match
81
227
  • IL_92280.1
IL_92280.1
  • Basepair signature: cWW-tSH-L-R-R-L-L-L-cWW
  • History status: Exact match
121
228
  • IL_04550.1
IL_04550.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: tHS tHH bulge with S-turn
81
229
  • IL_28644.1
IL_28644.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
61
230
  • IL_77014.1
IL_77014.1
  • Basepair signature: cWW-L-L-L-tWH-cSH-L-cWW-cWW
  • History status: Exact match
111
231
  • IL_46306.1
IL_46306.1
  • Basepair signature: cWW-L-R-R-cWW-cWW
  • History status: Exact match
101
232
  • IL_23448.1
IL_23448.1
  • Basepair signature: cWW-L-L-cWW
  • History status: Exact match
61
233
  • IL_06468.1
IL_06468.1
  • Basepair signature: cWW-tWH-R-R-R-cWW-cWW
  • History status: Exact match
  • Name: 16S h40 3WJ E.c.
111
234
  • IL_41341.1
IL_41341.1
  • Basepair signature: cWW-R-cWH-L-L-L-cWW
  • History status: Exact match
  • Name: Single sheared (tHS) with bulged bases. LSU Helix 75 (H75)
91
235
  • IL_02957.1
IL_02957.1
  • Basepair signature: cWW-R-R-cWW-tSS-cWW-cWW-L-L-L-L-L-L-L-cWW-cSS-cSS-L-cWW-cWW
  • History status: Exact match
261
236
  • IL_30067.1
IL_30067.1
  • Basepair signature: cWW-R-bif-tHW-tHS-cWW
  • History status: Exact match
101
237
  • IL_02690.1
IL_02690.1
  • Basepair signature: cWW-tSS-L-cSS-R-L-L-L-L-cWW
  • History status: Exact match
131
238
  • IL_76486.1
IL_76486.1
  • Basepair signature: cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif with syn G
151
239
  • IL_82601.1
IL_82601.1
  • Basepair signature: cWW-cWW-cWW-cWW
  • History status: Exact match
  • Name: Tandem cWW water-inserted CU pairs
81
240
  • IL_02835.1
IL_02835.1
  • Basepair signature: cWW-L-L-L-L-L-tHH-tHS-cWW
  • History status: Exact match
131
241
  • IL_05462.1
IL_05462.1
  • Basepair signature: cWW-R-cWW
  • History status: Exact match
71
242
  • IL_71942.1
IL_71942.1
  • Basepair signature: cWW-L-L-L-L-L-L-cWW
  • History status: Exact match
101
243
  • IL_06471.1
IL_06471.1
  • Basepair signature: cWW-cSW-tWH-tSW-cSH-L-cWS-R-cWW
  • History status: Exact match
101
244
  • IL_60643.1
IL_60643.1
  • Basepair signature: cWW-tHH-cWW
  • History status: Exact match
81
245
  • IL_57977.1
IL_57977.1
  • Basepair signature: cWW-tSH-L-R-L-tHS-cWW
  • History status: Exact match
111
246
  • IL_47687.1
IL_47687.1
  • Basepair signature: cWW-tWH-tWH-tWH-L-R-L-tWW-cWW
  • History status: Exact match
141
247
  • IL_97073.1
IL_97073.1
  • Basepair signature: cWW-R-R-R-tHS-cWW
  • History status: Exact match
91
248
  • IL_31290.1
IL_31290.1
  • Basepair signature: cWW-R-tWH-tHS-cWW
  • History status: Exact match
111
249
  • IL_52610.1
IL_52610.1
  • Basepair signature: cWW-tSS-tSH-L-L-L-L-cWW-L-L-L-L-L-L-L-L-cSS-L-L-L-cSW-cWW-L-cWW-R-tSH-R-R-R-R
  • History status: Exact match
371
250
  • IL_76263.1
IL_76263.1
  • Basepair signature: cWW-tHW-L-R-R-R-L-L-L-L-L-L-L-cWW
  • History status: Exact match
191
251
  • IL_89794.1
IL_89794.1
  • Basepair signature: cWW-tSH-tSH-tSS-tSS-R-cWW
  • History status: Exact match
141
252
  • IL_12486.1
IL_12486.1
  • Basepair signature: cWW-cWW-L-R-R-R-L-L-cWW-cWW
  • History status: Exact match
141
253
  • IL_97842.1
IL_97842.1
  • Basepair signature: cWW-R-R-R-R-cWS-cWW-cWW-L-R-cWW
  • History status: Exact match
161
254
  • IL_17682.1
IL_17682.1
  • Basepair signature: cWW-L-R-tSH-tHW-cSH-tHH-tHS-cWW-cWW
  • History status: Exact match
  • Name: Sarcin-ricin motif from Eukaryal LSU Helix 11
171
255
  • IL_83920.1
IL_83920.1
  • Basepair signature: cWW-cWW-L-cWW
  • History status: Exact match
71
256
  • IL_75328.1
IL_75328.1
  • Basepair signature: cWW-L-R-R-R-L-L-cSS-tSS-cWW
  • History status: Exact match
141
257
  • IL_26971.1
IL_26971.1
  • Basepair signature: cWW-tSH-L-R-R-R-L-cWW
  • History status: Exact match
111
258
  • IL_91044.1
IL_91044.1
  • Basepair signature: cWW-L-R-tHW-cWW
  • History status: Exact match
111
259
  • IL_86059.1
IL_86059.1
  • Basepair signature: cWW-cWW
  • History status: Exact match
71
260
  • IL_21221.1
IL_21221.1
  • Basepair signature: cWW-cSH-tWH-cSH-cWS-cWW
  • History status: Exact match
  • Name: SSU Helix 12 (h12) IL
71
261
  • IL_67735.1
IL_67735.1
  • Basepair signature: cWW-R-R-tHS-cWW
  • History status: Exact match
91
262
  • IL_87394.1
IL_87394.1
  • Basepair signature: cWW-L-R-R-R-R-R-cWW
  • History status: Exact match
101
263
  • IL_68827.1
IL_68827.1
  • Basepair signature: cWW-tSH-tHH-R-R-R-cWW
  • History status: Exact match
  • Name: Reverse Kink-Turn
111
264
  • IL_53988.1
IL_53988.1
  • Basepair signature: cWW-cSW-L-L-tHS-cWS-cWW
  • History status: Exact match
131
265
  • IL_54450.1
IL_54450.1
  • Basepair signature: cWW-L-R-cWW-cWW
  • History status: Exact match
81
266
  • IL_37347.1
IL_37347.1
  • Basepair signature: cWW-cHW-L-tHW-tHW-tHW-bif-cWW
  • History status: Exact match
161
267
  • IL_15205.1
IL_15205.1
  • Basepair signature: cWW-cWW-L-cSW-L-tHS-cWW
  • History status: Exact match
131
268
  • IL_80652.1
IL_80652.1
  • Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
  • History status: Exact match
141
269
  • IL_59529.1
IL_59529.1
  • Basepair signature: cWW-tWH-tHH-tHS-cWW
  • History status: Exact match
111
270
  • IL_06847.1
IL_06847.1
  • Basepair signature: cWW-R-cSW-R-R-tHS-cWW
  • History status: Exact match
  • Name: Group II Intron IL
131
271
  • IL_42891.1
IL_42891.1
  • Basepair signature: cWW-L-R-R-L-L-L-cSH-L-L-cWW
  • History status: Exact match
161



Exact match 268; Updated, 1 parent 2; New id, 2 parents 1;