Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_1S72_0011/0/55:64No text annotation
Not in a motif group
homologous
HL_4V9F_001
HL_99167.1
HL_1S72_0021/0/83:91No text annotation
Not in a motif group
homologous
HL_4V9F_002
HL_96598.1
HL_1S72_0031/0/118:122No text annotation
Not in a motif group
homologous
HL_4V9F_003
HL_52841.1
HL_1S72_0051/0/136:142No text annotation
Not in a motif group
homologous
HL_4V9F_005
HL_03562.2
HL_1S72_0061/0/164:171No text annotation
Not in a motif group
geometric
HL_4V9F_006
HL_06192.2
HL_1S72_0071/0/195:201No text annotation
Not in a motif group
homologous
HL_4V9F_007
HL_85680.1
HL_1S72_0081/0/217:223No text annotation
Not in a motif group
homologous
HL_4V9F_008
HL_67216.7
HL_1S72_0091/0/252:257GNRA
Not in a motif group
homologous
HL_4V9F_009
HL_42097.2
HL_1S72_0101/0/312:319T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V9F_010
HL_89380.2
HL_1S72_0111/0/326:330No text annotation
Not in a motif group
homologous
HL_4V9F_011
HL_75407.1
HL_1S72_0121/0/334:342No text annotation
Not in a motif group
homologous
HL_4V9F_012
HL_08002.9
HL_1S72_0131/0/390:399No text annotation
Not in a motif group
homologous
HL_4V9F_013
HL_71554.2
HL_1S72_0141/0/416:424No text annotation
Not in a motif group
homologous
HL_4V9F_014
HL_12078.2
HL_1S72_0151/0/468:473GNRA
Not in a motif group
homologous
HL_4V9F_015
HL_42097.2
HL_1S72_0161/0/493:499GNRA with one bulged base
Not in a motif group
homologous
HL_4V9F_016
HL_42097.2
HL_1S72_0171/0/576:581GNRA
Not in a motif group
homologous
HL_4V9F_017
HL_42097.2
HL_1S72_0191/0/670:676No text annotation
Not in a motif group
homologous
HL_4V9F_019
HL_90617.2
HL_1S72_0201/0/690:695GNRA
Not in a motif group
homologous
HL_4V9F_020
HL_42097.2
HL_1S72_0221/0/733:738Other HL
Not in a motif group
homologous
HL_4V9F_022
HL_30784.2
HL_1S72_0231/0/804:809GNRA
Not in a motif group
homologous
HL_4V9F_023
HL_42097.2
HL_1S72_0241/0/837:846No text annotation
Not in a motif group
homologous
HL_4V9F_024
HL_39334.6
HL_1S72_0251/0/872:878No text annotation
Not in a motif group
homologous
HL_4V9F_025
HL_74322.1
HL_1S72_0261/0/919:924No text annotation
Not in a motif group
homologous
HL_4V9F_026
HL_64365.1
HL_1S72_0281/0/1054:1060GNRA
Not in a motif group
homologous
HL_4V9F_028
HL_42097.2
HL_1S72_0291/0/1076:1083No text annotation
Not in a motif group
homologous
HL_4V9F_029
HL_64430.2
HL_1S72_0321/0/1274:1282No text annotation
Not in a motif group
homologous
HL_4V9F_032
HL_49288.1
HL_1S72_0331/0/1326:1331GNRA
Not in a motif group
homologous
HL_4V9F_033
HL_42097.2
HL_1S72_0341/0/1387:1395T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4V9F_034
HL_89380.2
HL_1S72_0351/0/1430:1436No text annotation
Not in a motif group
homologous
HL_4V9F_035
HL_46680.1
HL_1S72_0361/0/1468:1474GNRA
Not in a motif group
homologous
HL_4V9F_036
HL_42097.2
HL_1S72_0371/0/1498:1507No text annotation
Not in a motif group
homologous
HL_4V9F_037
HL_69023.2
HL_1S72_0391/0/1594:1600Other HL
Not in a motif group
homologous
HL_4V9F_039
HL_27930.1
HL_1S72_0401/0/1628:1633GNRA
Not in a motif group
homologous
HL_4V9F_040
HL_42097.2
HL_1S72_0411/0/1651:1655No text annotation
Not in a motif group
homologous
HL_4V9F_041
HL_49678.1
HL_1S72_0421/0/1687:1694No text annotation
Not in a motif group
homologous
HL_4V9F_042
HL_64430.2
HL_1S72_0431/0/1705:1713No text annotation
Not in a motif group
homologous
HL_4V9F_043
HL_84085.2
HL_1S72_0441/0/1769:1774UNCG
Not in a motif group
homologous
HL_4V9F_044
HL_03562.2
HL_1S72_0451/0/1793:1799GNRA
Not in a motif group
homologous
HL_4V9F_045
HL_42097.2
HL_1S72_0461/0/1808:1812No text annotation
Not in a motif group
homologous
HL_4V9F_046
HL_76539.2
HL_1S72_0471/0/1833:1843No text annotation
Not in a motif group
homologous
HL_4V9F_047
HL_43613.5
HL_1S72_0481/0/1862:1867GNRA
Not in a motif group
homologous
HL_4V9F_048
HL_42097.2
HL_1S72_0491/0/1916:1923No text annotation
Not in a motif group
homologous
HL_4V9F_049
HL_84085.2
HL_1S72_0511/0/1990:1998No text annotation
Not in a motif group
homologous
HL_4V9F_051
HL_51824.1
HL_1S72_0521/0/2068:2077No text annotation
Not in a motif group
homologous
HL_4V9F_052
HL_90642.6
HL_1S72_0541/0/2248:2253GNRA
Not in a motif group
homologous
HL_4V9F_054
HL_42097.2
HL_1S72_0551/0/2281:2289No text annotation
Not in a motif group
homologous
HL_4V9F_055
HL_53171.2
HL_1S72_0561/0/2298:2310No text annotation
Not in a motif group
homologous
HL_4V9F_056
HL_19870.6
HL_1S72_0581/0/2358:2365No text annotation
Not in a motif group
homologous
HL_4V9F_058
HL_12078.2
HL_1S72_0591/0/2389:2399No text annotation
Not in a motif group
homologous
HL_4V9F_059
HL_20146.1
HL_1S72_0601/0/2411:2416GNRA
Not in a motif group
homologous
HL_4V9F_060
HL_42097.2
HL_1S72_0611/0/2442:2450No text annotation
Not in a motif group
homologous
HL_4V9F_061
HL_12078.2
HL_1S72_0621/0/2506:2514No text annotation
Not in a motif group
homologous
HL_4V9F_062
HL_06192.2
HL_1S72_0631/0/2563:2570No text annotation
Not in a motif group
homologous
HL_4V9F_063
HL_91104.1
HL_1S72_0641/0/2585:2593No text annotation
Not in a motif group
homologous
HL_4V9F_064
NA
HL_1S72_0651/0/2629:2634GNRA
Not in a motif group
homologous
HL_4V9F_065
HL_42097.2
HL_1S72_0661/0/2695:2700GNRA
Not in a motif group
homologous
HL_4V9F_066
HL_42097.2
HL_1S72_0671/0/2737:2742Ribsomal LSU H95
Not in a motif group
homologous
HL_4V9F_067
HL_46680.1
HL_1S72_0681/0/2780:2794No text annotation
Not in a motif group
homologous
HL_4V9F_068
HL_56677.7
HL_1S72_0691/0/2836:2844No text annotation
Not in a motif group
homologous
HL_4V9F_069
HL_27930.1
HL_1S72_0701/0/2876:2881GNRA
Not in a motif group
homologous
HL_4V9F_070
HL_42097.2
HL_1S72_0711/9/37:43No text annotation
Not in a motif group
homologous
HL_4V9F_071
HL_87939.1
HL_1S72_0721/9/89:94GNRA
Not in a motif group
homologous
HL_4V9F_072
HL_42097.2

Problematic loops

#loop idProblemSequence
HL_1S72_004No text annotation
HL_1S72_018No text annotation
HL_1S72_021No text annotation
HL_1S72_027No text annotation
HL_1S72_030No text annotation
HL_1S72_031No text annotation
HL_1S72_038No text annotation
HL_1S72_050No text annotation
HL_1S72_053No text annotation
HL_1S72_057No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_1S72_0011/0/21:27,
1/0/516:522
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4V9F_001
IL_66414.6
IL_1S72_0021/0/33:34,
1/0/448:450
Single bulged A
Not in a motif group
homologous
IL_4V9F_002
IL_37497.3
IL_1S72_0031/0/39:41,
1/0/440:443
Major groove platform with extra cWW
Not in a motif group
homologous
IL_4V9F_003
IL_18471.2
IL_1S72_0041/0/77:81,
1/0/93:100
Kink-turn
Not in a motif group
homologous
IL_4V9F_004
IL_70923.2
IL_1S72_0051/0/153:154,
1/0/182:184
Single stack bend
Not in a motif group
homologous
IL_4V9F_005
IL_76488.2
IL_1S72_0061/0/158:164,
1/0/171:178
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4V9F_006
IL_04346.7
IL_1S72_0071/0/210:216,
1/0/224:229
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4V9F_007
IL_76042.2
IL_1S72_0081/0/245:248,
1/0/265:266
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4V9F_008
IL_50694.2
IL_1S72_0091/0/248:249,
1/0/260:265
No text annotation
Not in a motif group
geometric
IL_4V9F_009
IL_19724.2
IL_1S72_0101/0/274:275,
1/0/374:376
Single bulged G
Not in a motif group
homologous
IL_4V9F_010
IL_00225.3
IL_1S72_0111/0/280:287,
1/0/365:369
No text annotation
Not in a motif group
IL_1S72_0121/0/287:290,
1/0/362:365
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6CZR_168
IL_67743.1
IL_1S72_0131/0/290:296,
1/0/355:362
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
Not in a motif group
homologous
IL_4V9F_012
IL_59724.1
IL_1S72_0141/0/307:309,
1/0/322:323
Single bulged U
Not in a motif group
homologous
IL_4V9F_013
IL_83039.14
IL_1S72_0151/0/487:491,
1/0/501:515
No text annotation
Not in a motif group
geometric
IL_4V9F_014
IL_31504.1
IL_1S72_0161/0/548:553,
1/0/606:608
No text annotation
Not in a motif group
homologous
IL_4V9F_015
IL_59302.1
IL_1S72_0171/0/554:555,
1/0/602:605
No text annotation
Not in a motif group
homologous
IL_4V9F_016
IL_48100.2
IL_1S72_0181/0/558:561,
1/0/596:599
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1JID_002
IL_30621.3
IL_1S72_0191/0/562:567,
1/0/591:595
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_1S72_0201/0/567:572,
1/0/585:591
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4V9F_019
IL_16458.1
IL_1S72_0211/0/663:667,
1/0/679:683
AAA cross-strand stack
Not in a motif group
homologous
IL_4V9F_020
IL_17136.1
IL_1S72_0221/0/699:702,
1/0/726:727
Multiple bulged bases
Not in a motif group
homologous
IL_4V9F_021
IL_76389.1
IL_1S72_0231/0/705:709,
1/0/719:723
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V9F_022
IL_17136.1
IL_1S72_0241/0/763:765,
1/0/899:901
No text annotation
Not in a motif group
homologous
IL_4V9F_023
IL_95997.1
IL_1S72_0251/0/765:769,
1/0/892:899
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4V9F_024
IL_17470.6
IL_1S72_0261/0/788:789,
1/0/856:858
Single bulged A
Not in a motif group
geometric
IL_4V9F_025
IL_37497.3
IL_1S72_0271/0/793:794,
1/0/819:821
Single bulged G
Not in a motif group
homologous
IL_4V9F_026
IL_00225.3
IL_1S72_0281/0/794:798,
1/0/815:819
Triple sheared
Not in a motif group
geometric
IL_4V9F_027
IL_56467.8
IL_1S72_0291/0/830:833,
1/0/849:851
Major groove platform with extra cWW
Not in a motif group
homologous
IL_4V9F_028
IL_05564.2
IL_1S72_0301/0/834:836,
1/0/847:848
Single bulged U
Not in a motif group
homologous
IL_4V9F_029
IL_83039.14
IL_1S72_0311/0/868:870,
1/0/880:884
Multiple bulged bases
Not in a motif group
homologous
IL_4V9F_030
IL_90991.6
IL_1S72_0321/0/936:940,
1/0/1026:1034
Kink-turn
Not in a motif group
homologous
IL_4V9F_031
IL_45067.2
IL_1S72_0331/0/942:944,
1/0/1023:1024
Single bulged A
Not in a motif group
homologous
IL_4V9F_032
IL_37497.3
IL_1S72_0341/0/952:956,
1/0/1011:1015
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4V9F_033
IL_38862.1
IL_1S72_0351/0/956:957,
1/0/1009:1011
Minor groove platform
Not in a motif group
homologous
IL_4V9F_034
IL_42622.2
IL_1S72_0361/0/958:964,
1/0/1004:1008
No text annotation
Not in a motif group
homologous
IL_4V9F_035
IL_21121.1
IL_1S72_0371/0/965:968,
1/0/1000:1003
No text annotation
Not in a motif group
homologous
IL_4V9F_036
IL_45371.1
IL_1S72_0381/0/1095:1099,
1/0/1257:1261
UAA/GAN
Not in a motif group
homologous
IL_4V9F_037
IL_89002.2
IL_1S72_0391/0/1101:1108,
1/0/1254:1255
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4V9F_038
IL_15861.7
IL_1S72_0401/0/1108:1110,
1/0/1253:1254
Single bulged U
Not in a motif group
geometric
IL_4V9F_039
IL_83039.14
IL_1S72_0411/0/1115:1121,
1/0/1243:1248
No text annotation
Not in a motif group
homologous
IL_4V9F_040
IL_57188.3
IL_1S72_0421/0/1136:1138,
1/0/1225:1226
Single bulged G
Not in a motif group
homologous
IL_4V9F_041
IL_00225.3
IL_1S72_0431/0/1147:1155,
1/0/1212:1216
Kink-turn
Not in a motif group
homologous
IL_4V9F_042
IL_90538.4
IL_1S72_0451/0/1269:1270,
1/0/1286:1289
No text annotation
Not in a motif group
homologous
IL_4V9F_045
IL_44546.1
IL_1S72_0461/0/1301:1303,
1/0/1351:1354
Isolated cWS basepair
Not in a motif group
homologous
IL_4V9F_046
IL_52767.2
IL_1S72_0471/0/1303:1305,
1/0/1349:1351
No text annotation
Not in a motif group
geometric
IL_4V9F_047
IL_95997.1
IL_1S72_0481/0/1312:1319,
1/0/1338:1342
Kink-turn
Not in a motif group
homologous
IL_4V9F_048
IL_70923.2
IL_1S72_0491/0/1367:1373,
1/0/2052:2057
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4V9F_049
IL_76042.2
IL_1S72_0501/0/1416:1419,
1/0/1678:1679
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4V9F_050
IL_50694.2
IL_1S72_0511/0/1425:1429,
1/0/1437:1439
C-loop
Not in a motif group
homologous
IL_4V9F_051
IL_63596.6
IL_1S72_0521/0/1456:1460,
1/0/1483:1489
UAA/GAN
Not in a motif group
homologous
IL_4V9F_052
IL_89002.2
IL_1S72_0531/0/1465:1467,
1/0/1475:1478
No text annotation
Not in a motif group
homologous
IL_4V9F_053
IL_46796.1
IL_1S72_0541/0/1521:1529,
1/0/1662:1665
No text annotation
Not in a motif group
homologous
IL_4V9F_054
IL_46559.1
IL_1S72_0551/0/1542:1546,
1/0/1639:1643
tSH-tHW-tHS
Not in a motif group
homologous
IL_4V9F_055
IL_17136.1
IL_1S72_0561/0/1570:1574,
1/0/1622:1627
tSH-tHH-tHS
Not in a motif group
homologous
IL_4V9F_056
IL_62654.1
IL_1S72_0571/0/1578:1583,
1/0/1612:1618
No text annotation
Not in a motif group
homologous
IL_4V9F_057
IL_34822.1
IL_1S72_0581/0/1587:1592,
1/0/1602:1608
Kink-turn
Not in a motif group
homologous
IL_4V9F_058
IL_60192.2
IL_1S72_0591/0/1728:1734,
1/0/2045:2047
No text annotation
Not in a motif group
homologous
IL_4V9F_059
IL_12566.2
IL_1S72_0601/0/1741:1743,
1/0/2036:2038
Isolated tWW turn
Not in a motif group
homologous
IL_4V9F_060
IL_54997.7
IL_1S72_0611/0/1744:1747,
1/0/2034:2035
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V9F_061
IL_50694.2
IL_1S72_0621/0/1747:1752,
1/0/2031:2034
Intercalated tWH
Not in a motif group
homologous
IL_4V9F_062
IL_82842.2
IL_1S72_0631/0/1764:1769,
1/0/1774:1780
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_063
IL_65969.2
IL_1S72_0641/0/1826:1827,
1/0/2021:2023
Single bulged A
Not in a motif group
homologous
IL_4V9F_064
IL_37497.3
IL_1S72_0651/0/1854:1860,
1/0/1869:1877
Kink-turn related
Not in a motif group
homologous
IL_4V9F_065
IL_17069.3
IL_1S72_0661/0/1893:1896,
1/0/1943:1944
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_4V9F_066
IL_88739.1
IL_1S72_0671/0/1897:1898,
1/0/1939:1942
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_4V9F_067
IL_16396.2
IL_1S72_0681/0/1902:1905,
1/0/1934:1935
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V9F_068
IL_95601.3
IL_1S72_0691/0/1907:1913,
1/0/1926:1932
No text annotation
Not in a motif group
homologous
IL_4V9F_069
IL_36973.6
IL_1S72_0701/0/1974:1975,
1/0/2005:2008
No text annotation
Not in a motif group
geometric
IL_4V9F_070
IL_59677.2
IL_1S72_0711/0/1975:1986,
1/0/2002:2005
No text annotation
Not in a motif group
homologous
IL_4V9F_071
IL_81589.2
IL_1S72_0721/0/2090:2093,
1/0/2652:2654
No text annotation
Not in a motif group
homologous
IL_4V9F_072
IL_63450.2
IL_1S72_0731/0/2095:2097,
1/0/2647:2650
No text annotation
Not in a motif group
homologous
IL_4V9F_073
IL_54678.5
IL_1S72_0741/0/2108:2110,
1/0/2477:2478
Single bulged U
Not in a motif group
homologous
IL_4V9F_074
IL_83039.14
IL_1S72_0751/0/2111:2112,
1/0/2473:2476
Minor groove platform
Not in a motif group
homologous
IL_4V9F_075
IL_42622.2
IL_1S72_0761/0/2122:2124,
1/0/2269:2272
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_4V9F_076
IL_38958.7
IL_1S72_0771/0/2279:2280,
1/0/2290:2292
Single bulged A
Not in a motif group
homologous
IL_4V9F_079
IL_37497.3
IL_1S72_0781/0/2331:2333,
1/0/2351:2355
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_4V9F_080
IL_38958.7
IL_1S72_0791/0/2436:2438,
1/0/2454:2455
Single stack bend
Not in a motif group
homologous
IL_4V9F_081
IL_76488.2
IL_1S72_0801/0/2489:2490,
1/0/2531:2533
Major groove platform
Not in a motif group
homologous
IL_4V9F_082
IL_27635.2
IL_1S72_0811/0/2492:2494,
1/0/2528:2529
Major groove platform
Not in a motif group
homologous
IL_4V9F_083
IL_76223.2
IL_1S72_0821/0/2494:2496,
1/0/2524:2528
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_4V9F_084
IL_92788.2
IL_1S72_0831/0/2501:2505,
1/0/2515:2519
Triple sheared
Not in a motif group
homologous
IL_4V9F_085
IL_56467.8
IL_1S72_0841/0/2542:2543,
1/0/2615:2617
Major groove platform
Not in a motif group
homologous
IL_4V9F_086
IL_76223.2
IL_1S72_0851/0/2545:2547,
1/0/2609:2613
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4V9F_087
IL_90933.2
IL_1S72_0861/0/2547:2548,
1/0/2606:2609
Multiple bulged bases
Not in a motif group
geometric
IL_4V9F_088
IL_71530.2
IL_1S72_0871/0/2557:2558,
1/0/2575:2578
Minor groove platform with intercalation
Not in a motif group
homologous
IL_4V9F_089
IL_95601.3
IL_1S72_0881/0/2626:2627,
1/0/2636:2638
Single bulged A
Not in a motif group
geometric
IL_4V88_409
IL_37497.3
IL_1S72_0891/0/2672:2676,
1/0/2809:2817
tSH-tHS-tHW
Not in a motif group
geometric
IL_4WF9_099
IL_04638.1
IL_1S72_0901/0/2689:2695,
1/0/2700:2705
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_4V9F_092
IL_76042.2
IL_1S72_0911/0/2717:2721,
1/0/2761:2763
C-loop
Not in a motif group
homologous
IL_4V9F_093
IL_63596.6
IL_1S72_0921/0/2724:2728,
1/0/2754:2758
UAA/GAN
Not in a motif group
homologous
IL_4V9F_094
IL_07235.1
IL_1S72_0931/0/2732:2733,
1/0/2746:2750
No text annotation
Not in a motif group
homologous
IL_4V9F_095
IL_71530.2
IL_1S72_0941/0/2772:2777,
1/0/2797:2802
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_4V9F_096
IL_49767.5
IL_1S72_0951/0/2855:2857,
1/0/2900:2903
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4V9F_097
IL_82068.2
IL_1S72_0961/0/2860:2861,
1/0/2895:2897
Single bulged A
Not in a motif group
homologous
IL_4V9F_098
IL_37497.3
IL_1S72_0971/0/2864:2869,
1/0/2888:2892
No text annotation
Not in a motif group
homologous
IL_4V9F_099
IL_83162.5
IL_1S72_0981/0/2873:2876,
1/0/2881:2884
Double sheared
Not in a motif group
geometric
IL_4V9F_100
IL_09705.9
IL_1S72_0991/9/15:16,
1/9/64:66
Major groove intercalation
Not in a motif group
homologous
IL_4V9F_101
IL_37497.3
IL_1S72_1001/9/21:28,
1/9/54:59
No text annotation
Not in a motif group
IL_1S72_1011/9/29:30,
1/9/50:53
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V9F_103
IL_09061.6
IL_1S72_1021/9/33:37,
1/9/43:47
Symmetric double minor groove platform
Not in a motif group
geometric
IL_4V9F_104
IL_58103.6
IL_1S72_1031/9/75:81,
1/9/101:106
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4V9F_106
IL_76042.2
IL_1S72_1041/9/86:88,
1/9/95:96
Single bulged U
Not in a motif group
homologous
IL_4V9F_107
IL_83039.14

Problematic loops

#loop idProblemSequence
IL_1S72_044No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_1S72_0011/0/240:244,
1/0/267:273,
1/0/377:379
No text annotation
Not in a motif group
homologous
J3_4V9F_001
NA
J3_1S72_0021/0/774:780,
1/0/866:868,
1/0/884:887
No text annotation
Not in a motif group
J3_1S72_0031/0/789:791,
1/0/823:828,
1/0/853:856
No text annotation
Not in a motif group
homologous
J3_4V9F_003
NA
J3_1S72_0051/0/1404:1409,
1/0/1700:1703,
1/0/1715:1718
No text annotation
Not in a motif group
homologous
J3_4V9F_005
NA
J3_1S72_0061/0/1412:1415,
1/0/1680:1686,
1/0/1695:1697
No text annotation
Not in a motif group
homologous
J3_4V9F_006
NA
J3_1S72_0071/0/2131:2134,
1/0/2241:2245,
1/0/2256:2262
No text annotation
Not in a motif group
homologous
J3_4V9F_007
NA
J3_1S72_0081/0/2329:2331,
1/0/2355:2357,
1/0/2366:2371
No text annotation
Not in a motif group
homologous
J3_4V9F_008
NA
J3_1S72_0091/0/2552:2555,
1/0/2580:2583,
1/0/2595:2602
No text annotation
Not in a motif group
homologous
J3_4V9F_009
NA
J3_1S72_0101/9/9:14,
1/9/67:71,
1/9/110:114
No text annotation
Not in a motif group
homologous
J3_4V9F_010
NA

Problematic loops

#loop idProblemSequence
J3_1S72_004No text annotation

Coloring options:
Copyright 2024 BGSU RNA group. Page generated in 0.1827 s