Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V9H_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V9H_0021/AA/77:92No text annotation
Not in a motif group
geometric
HL_3SKL_006
HL_47100.1
HL_4V9H_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.2
HL_4V9H_0041/AA/189C:189HNo text annotation
Not in a motif group
homologous
HL_4LFB_004
HL_10278.1
HL_4V9H_0051/AA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_91104.1
HL_4V9H_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V9H_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.2
HL_4V9H_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V9H_0091/AA/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_4V9H_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.2
HL_4V9H_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V9H_0121/AA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V9H_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_4V9H_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V9H_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_4V9H_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_4LFB_016
HL_87030.2
HL_4V9H_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V9H_0181/AA/838:848No text annotation
Not in a motif group
homologous
HL_4LFB_018
HL_38927.2
HL_4V9H_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.2
HL_4V9H_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_4V9H_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V9H_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.2
HL_4V9H_0231/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.2
HL_4V9H_0241/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V9H_0251/AA/1134:1140No text annotation
Not in a motif group
geometric
HL_1WZ2_007
HL_10278.1
HL_4V9H_0261/AA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.2
HL_4V9H_0271/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.2
HL_4V9H_0281/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V9H_0291/AA/1356:1366No text annotation
Not in a motif group
HL_4V9H_0301/AA/1445:1457No text annotation
Not in a motif group
geometric
HL_2IZN_001
HL_97896.2
HL_4V9H_0311/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V9H_0331/AV/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4V90_033
HL_53597.2
HL_4V9H_0351/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V9H_0361/BA/87:95No text annotation
Not in a motif group
homologous
HL_7RQB_002
HL_96598.1
HL_4V9H_0371/BA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4V9H_0381/BA/139:142ANo text annotation
Not in a motif group
homologous
HL_7RQB_004
HL_79921.3
HL_4V9H_0401/BA/194:201No text annotation
Not in a motif group
geometric
HL_7RQB_006
HL_06192.2
HL_4V9H_0411/BA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V9H_0421/BA/246:252No text annotation
Not in a motif group
homologous
HL_7A0S_008
HL_67216.7
HL_4V9H_0431/BA/271J:271MNo text annotation
Not in a motif group
geometric
HL_6JOO_002
HL_38927.2
HL_4V9H_0441/BA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V9H_0451/BA/319:323No text annotation
Not in a motif group
homologous
HL_7RQB_011
HL_75407.1
HL_4V9H_0461/BA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.9
HL_4V9H_0471/BA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V9H_0481/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V9H_0491/BA/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_42097.2
HL_4V9H_0501/BA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.2
HL_4V9H_0521/BA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_4V9H_0531/BA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V9H_0541/BA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.2
HL_4V9H_0551/BA/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.2
HL_4V9H_0561/BA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V9H_0571/BA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V9H_0581/BA/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_4V9H_0591/BA/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_4V9H_0611/BA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.2
HL_4V9H_0621/BA/978:985No text annotation
Not in a motif group
homologous
HL_7RQB_028
HL_64430.2
HL_4V9H_0651/BA/1170:1179No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_4V9H_0661/BA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.2
HL_4V9H_0671/BA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4V9H_0681/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_7A0S_033
HL_46680.1
HL_4V9H_0691/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V9H_0701/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V9H_0711/BA/1450A:1461No text annotation
Not in a motif group
HL_4V9H_0721/BA/1492:1498No text annotation
Not in a motif group
HL_4V9H_0741/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V9H_0751/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_4V9H_0761/BA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V9H_0771/BA/1691:1696No text annotation
Not in a motif group
geometric
HL_7RQB_042
HL_03562.2
HL_4V9H_0781/BA/1719:1743No text annotation
Not in a motif group
HL_4V9H_0791/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V9H_0801/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_7RQB_045
HL_43613.5
HL_4V9H_0811/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.2
HL_4V9H_0821/BA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.2
HL_4V9H_0831/BA/1909:1921No text annotation
Not in a motif group
HL_4V9H_0841/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7RQB_049
HL_51824.1
HL_4V9H_0851/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V9H_0861/BA/2143:2148Other HL
Not in a motif group
geometric
HL_2CZJ_007
HL_53845.1
HL_4V9H_0871/BA/2205:2219No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V9H_0881/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_5J7L_186
NA
HL_4V9H_0891/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V9H_0901/BA/2303:2313No text annotation
Not in a motif group
HL_4V9H_0911/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V9H_0921/BA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V9H_0931/BA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.2
HL_4V9H_0941/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4V9H_0951/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_5J7L_193
HL_06192.2
HL_4V9H_0961/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_4V9H_0971/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V9H_0981/BA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.2
HL_4V9H_0991/BA/2658:2663GNRA
Not in a motif group
geometric
HL_5J7L_197
HL_42097.2
HL_4V9H_1001/BA/2701:2706No text annotation
Not in a motif group
homologous
HL_7RQB_065
HL_53171.2
HL_4V9H_1011/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V9H_1031/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V9H_1041/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.2
HL_4V9H_1051/BB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V9H_1061/BB/86:91No text annotation
Not in a motif group
homologous
HL_7A0S_070
HL_42097.2

Problematic loops

#loop idProblemSequence
HL_4V9H_032No text annotation
HL_4V9H_034T-loop with 2 stacked bulged bases
HL_4V9H_039No text annotation
HL_4V9H_051No text annotation
HL_4V9H_060No text annotation
HL_4V9H_063No text annotation
HL_4V9H_064No text annotation
HL_4V9H_073No text annotation
HL_4V9H_102No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V9H_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_4V9H_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.3
IL_4V9H_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
homologous
IL_4LFB_003
IL_11178.1
IL_4V9H_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_4V9H_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4V9H_0061/AA/67:69,
1/AA/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4V9H_0071/AA/129:131,
1/AA/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_4V9H_0081/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V9H_0091/AA/148:153,
1/AA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4V9H_0101/AA/186:188,
1/AA/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4V9H_0111/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V9H_0121/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_4V9H_0131/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4V9H_0141/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.14
IL_4V9H_0151/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_4V9H_0161/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
geometric
IL_4LFB_016
IL_00225.3
IL_4V9H_0171/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V9H_0181/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_4V9H_0191/AA/450:455,
1/AA/476:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_4V9H_0201/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V9H_0211/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V9H_0221/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V9H_0231/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_023
IL_17136.1
IL_4V9H_0241/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.2
IL_4V9H_0251/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_4V9H_0261/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4V9H_0271/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4LFB_027
IL_50694.2
IL_4V9H_0281/AA/657:658,
1/AA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.2
IL_4V9H_0291/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4V9H_0301/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V9H_0311/AA/683:688,
1/AA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V9H_0321/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_4V9H_0331/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_4V9H_0341/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V9H_0351/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.3
IL_4V9H_0361/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_4V9H_0371/AA/933:935,
1/AA/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_4V9H_0381/AA/953:954,
1/AA/1226:1228
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_4V9H_0391/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
homologous
IL_5J7L_043
IL_47078.1
IL_4V9H_0401/AA/1000:1006,
1/AA/1023:1041
No text annotation
Not in a motif group
IL_4V9H_0411/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.14
IL_4V9H_0421/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V9H_0431/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_4V9H_0441/AA/1060:1061,
1/AA/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.14
IL_4V9H_0451/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_4V9H_0461/AA/1124:1127,
1/AA/1145:1149
Minor groove platform
Not in a motif group
homologous
IL_6CZR_158
IL_58103.6
IL_4V9H_0471/AA/1129:1132,
1/AA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_4V9H_0481/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
IL_4V9H_0491/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_4V9H_0501/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4V9H_0511/AA/1259:1260,
1/AA/1274:1276
Not an internal loop
Not in a motif group
homologous
IL_4LFB_053
IL_93353.1
IL_4V9H_0521/AA/1260:1262,
1/AA/1273:1274
Minor groove platform
Not in a motif group
geometric
IL_4LFB_054
IL_93353.1
IL_4V9H_0531/AA/1303:1309,
1/AA/1328:1334
No text annotation
Not in a motif group
IL_4V9H_0541/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4V9H_0551/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V9H_0561/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_4V88_465
IL_95997.1
IL_4V9H_0571/AA/1407:1409,
1/AA/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_5Z1I_003
IL_64417.1
IL_4V9H_0581/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V9H_0591/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V9H_0601/AA/1431:1435,
1/AA/1466:1469
UAA/GAN variation
Not in a motif group
homologous
IL_4LFB_062
IL_07235.1
IL_4V9H_0611/AA/1435:1437,
1/AA/1464:1466
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_4V9H_0621/AA/1440:1443,
1/AA/1459:1461
Isolated basepair with bulged bases
Not in a motif group
homologous
IL_6CZR_172
IL_92788.2
IL_4V9H_0641/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_7RQB_001
IL_66414.6
IL_4V9H_0651/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.3
IL_4V9H_0661/BA/42:44,
1/BA/433:436
Major groove platform with extra cWW
Not in a motif group
geometric
IL_4V9F_003
IL_18471.2
IL_4V9H_0671/BA/81:85,
1/BA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4V9H_0681/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_7RQB_005
IL_76488.2
IL_4V9H_0691/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_4V9H_0701/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V9H_0711/BA/271I:271J,
1/BA/271M:271O
Single bulged U
Not in a motif group
geometric
IL_7RQB_008
IL_83039.14
IL_4V9H_0721/BA/272D:272E,
1/BA/363E:364
Major groove platform
Not in a motif group
homologous
IL_7RQB_009
IL_27635.2
IL_4V9H_0741/BA/280:284,
1/BA/357:360
tSH-tHW
Not in a motif group
homologous
IL_7RQB_011
IL_04059.1
IL_4V9H_0751/BA/288:290,
1/BA/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_4V9H_0761/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4V9H_0771/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
homologous
IL_7RQB_014
IL_60992.6
IL_4V9H_0781/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
geometric
IL_7RQB_015
IL_95997.1
IL_4V9H_0791/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_4V9H_0801/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_95997.1
IL_4V9H_0811/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_4WF9_021
IL_17470.6
IL_4V9H_0821/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
homologous
IL_7RQB_019
IL_37497.3
IL_4V9H_0831/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_00225.3
IL_4V9H_0841/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_4V9H_0851/BA/738:741,
1/BA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_4V9H_0861/BA/775:777,
1/BA/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_4V9H_0871/BA/837:838,
1/BA/940:942
Single stack bend
Not in a motif group
homologous
IL_7RQB_024
IL_92001.1
IL_4V9H_0881/BA/844:846,
1/BA/931:934
Intercalated cWW
Not in a motif group
geometric
IL_7RQB_025
IL_52767.2
IL_4V9H_0891/BA/846:850,
1/BA/927:931
No text annotation
Not in a motif group
homologous
IL_7RQB_026
IL_94165.1
IL_4V9H_0901/BA/858:862,
1/BA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7RQB_027
IL_38862.1
IL_4V9H_0911/BA/862:863,
1/BA/913:915
Minor groove platform
Not in a motif group
homologous
IL_7RQB_028
IL_42622.2
IL_4V9H_0921/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_4V9H_0931/BA/870:872,
1/BA/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_030
IL_52767.2
IL_4V9H_0941/BA/875:877,
1/BA/899:902
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_031
IL_46796.1
IL_4V9H_0951/BA/877:879,
1/BA/898:899
Minor groove platform
Not in a motif group
homologous
IL_7RQB_032
IL_93353.1
IL_4V9H_0981/BA/952:954,
1/BA/963:965
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_95997.1
IL_4V9H_0991/BA/994:996,
1/BA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_4V9H_1001/BA/998:1002,
1/BA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7RQB_036
IL_89002.2
IL_4V9H_1011/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_7RQB_037
IL_15861.7
IL_4V9H_1021/BA/1011:1013,
1/BA/1149:1150
Single bulged U
Not in a motif group
homologous
IL_7RQB_038
IL_83039.14
IL_4V9H_1031/BA/1018:1024,
1/BA/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_4V9H_1041/BA/1024:1030,
1/BA/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_4V9H_1051/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_4V9H_1061/BA/1043:1052,
1/BA/1107:1112
No text annotation
Not in a motif group
IL_4V9H_1101/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.2
IL_4V9H_1111/BA/1202:1206,
1/BA/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_4V9H_1121/BA/1208:1215,
1/BA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_4V9H_1131/BA/1219:1221,
1/BA/1229:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.3
IL_4V9H_1141/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_4V9H_1151/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_4V9H_1161/BA/1319:1323,
1/BA/1331:1333
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_4V9H_1171/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_4V9H_1181/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_4WF9_052
IL_17136.1
IL_4V9H_1191/BA/1415:1416,
1/BA/1582:1587
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_4V9H_1201/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_7RQB_055
IL_89002.2
IL_4V9H_1211/BA/1433:1435,
1/BA/1557:1560
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_056
IL_54997.7
IL_4V9H_1221/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_4V9H_1231/BA/1448:1450,
1/BA/1462:1463
Single stack bend
Not in a motif group
homologous
IL_7RQB_058
IL_76488.2
IL_4V9H_1241/BA/1469:1473,
1/BA/1518:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_4V9H_1251/BA/1481:1482,
1/BA/1506:1510
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_4V9H_1271/BA/1489:1491,
1/BA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_7RQB_062
IL_37497.3
IL_4V9H_1281/BA/1526:1529,
1/BA/1540:1546
No text annotation
Not in a motif group
homologous
IL_7RQB_063
IL_02656.1
IL_4V9H_1291/BA/1651:1656,
1/BA/2004:2006
No text annotation
Not in a motif group
homologous
IL_7RQB_064
IL_12566.2
IL_4V9H_1301/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_065
IL_54997.7
IL_4V9H_1311/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_4V9H_1321/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_7RQB_067
IL_82842.2
IL_4V9H_1331/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_7RQB_068
IL_65969.2
IL_4V9H_1341/BA/1770:1771,
1/BA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.3
IL_4V9H_1351/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_4V9H_1361/BA/1837:1840,
1/BA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7A0S_066
IL_88739.1
IL_4V9H_1371/BA/1841:1842,
1/BA/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_4V9H_1381/BA/1846:1849,
1/BA/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_4V9H_1391/BA/1851:1855,
1/BA/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7A0S_069
IL_90318.1
IL_4V9H_1401/BA/1856:1860,
1/BA/1882:1886
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_4V9H_1421/BA/1933:1934,
1/BA/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_076
IL_59677.2
IL_4V9H_1431/BA/1934:1945,
1/BA/1961:1964
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_4V9H_1441/BA/2050:2052,
1/BA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.2
IL_4V9H_1451/BA/2054:2057,
1/BA/2611:2615
No text annotation
Not in a motif group
IL_4V9H_1461/BA/2067:2069,
1/BA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.14
IL_4V9H_1471/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_4V9H_1481/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_4V9H_1491/BA/2085:2087,
1/BA/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_4V9H_1501/BA/2101:2103,
1/BA/2186:2188
No text annotation
Not in a motif group
geometric
IL_1YZ9_002
IL_95997.1
IL_4V9H_1521/BA/2108:2120,
1/BA/2178:2181
No text annotation
Not in a motif group
IL_4V9H_1531/BA/2122:2124,
1/BA/2174:2176
Isolated cWH basepair
Not in a motif group
geometric
IL_6F4H_001
IL_51629.2
IL_4V9H_1541/BA/2124:2127,
1/BA/2161:2174
No text annotation
Not in a motif group
geometric
IL_3U4M_003
IL_75283.2
IL_4V9H_1551/BA/2129:2136,
1/BA/2155:2159
Kink-turn
Not in a motif group
homologous
IL_3U4M_004
IL_70923.2
IL_4V9H_1571/BA/2139:2141,
1/BA/2150:2152
No text annotation
Not in a motif group
geometric
IL_4WF9_083
IL_95997.1
IL_4V9H_1581/BA/2141:2143,
1/BA/2148:2150
No text annotation
Not in a motif group
geometric
IL_1RPU_001
IL_95997.1
IL_4V9H_1591/BA/2297:2299,
1/BA/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_088
IL_38958.7
IL_4V9H_1601/BA/2350:2353,
1/BA/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_4V9H_1611/BA/2401:2403,
1/BA/2414:2415
Single bulged U
Not in a motif group
homologous
IL_5J7L_334
IL_83039.14
IL_4V9H_1621/BA/2453:2454,
1/BA/2498:2500
Single stack bend
Not in a motif group
geometric
IL_7RQB_091
IL_76488.2
IL_4V9H_1631/BA/2454:2455,
1/BA/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7RQB_092
IL_27635.2
IL_4V9H_1641/BA/2457:2459,
1/BA/2493:2494
Major groove platform
Not in a motif group
geometric
IL_4WF9_091
IL_27635.2
IL_4V9H_1651/BA/2459:2461,
1/BA/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_094
IL_92788.2
IL_4V9H_1661/BA/2466:2470,
1/BA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_7RQB_095
IL_56467.8
IL_4V9H_1671/BA/2507:2508,
1/BA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_4V9H_1681/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_7RQB_097
IL_90933.2
IL_4V9H_1691/BA/2512:2513,
1/BA/2571:2574
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_098
IL_71530.2
IL_4V9H_1701/BA/2522:2523,
1/BA/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.3
IL_4V9H_1711/BA/2591:2592,
1/BA/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.3
IL_4V9H_1721/BA/2636:2640,
1/BA/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_4V9H_1731/BA/2652:2658,
1/BA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7RQB_103
IL_16458.1
IL_4V9H_1741/BA/2680:2684,
1/BA/2725:2727
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_4V9H_1751/BA/2687:2691,
1/BA/2718:2722
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_4V9H_1761/BA/2695:2696,
1/BA/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_106
IL_71530.2
IL_4V9H_1771/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_4V9H_1781/BA/2838:2839,
1/BA/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_4V9H_1791/BA/2843:2846,
1/BA/2870:2874
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_4V9H_1801/BA/2847:2852,
1/BA/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_4V9H_1811/BB/17:18,
1/BB/65:67
Major groove intercalation
Not