Valid loops

#loop idlocationmotif
11/AA/30:32,1/AA/552:553NA
21/AA/44:45,1/AA/396:398NA
31/AA/47:52,1/AA/359:361NA
41/AA/54:56,1/AA/356:357NA
51/AA/63:66,1/AA/103:104NA
61/AA/67:69,1/AA/100:102NA
71/AA/129:131,1/AA/231:232NA
81/AA/132:136,1/AA/227:230NA
91/AA/148:153,1/AA/168:174NA
101/AA/186:188,1/AA/189L:191NA
111/AA/242:247,1/AA/277:284NA
121/AA/249:252,1/AA/274:275NA
131/AA/292:293,1/AA/304:308NA
141/AA/367:369,1/AA/392:393NA
151/AA/371:375,1/AA/389:390NA
161/AA/375:376,1/AA/387:389NA
171/AA/409:416,1/AA/427:433NA
181/AA/446:450,1/AA/483:488NA
191/AA/450:455,1/AA/476:483NA
201/AA/504:511,1/AA/540:541NA
211/AA/515:521,1/AA/528:536NA
221/AA/569:575,1/AA/880:881NA
231/AA/580:584,1/AA/757:761NA
241/AA/594:596,1/AA/644:645NA
251/AA/597:598,1/AA/640:643NA
261/AA/605:612,1/AA/628:633NA
271/AA/654:655,1/AA/751:754NA
281/AA/657:658,1/AA/747:749NA
291/AA/662:666,1/AA/740:743NA
301/AA/673:678,1/AA/712:717NA
311/AA/683:688,1/AA/699:707NA
321/AA/774:778,1/AA/804:805NA
331/AA/779:783,1/AA/799:803NA
341/AA/887:894,1/AA/905:910NA
351/AA/922:923,1/AA/1393:1395NA
361/AA/925:927,1/AA/1390:1391NA
371/AA/933:935,1/AA/1380:1384NA
381/AA/953:954,1/AA/1226:1228NA
391/AA/993:997,1/AA/1044:1045NA
401/AA/1000:1006,1/AA/1023:1041NA
411/AA/1048:1050,1/AA/1208:1209NA
421/AA/1052:1056,1/AA/1204:1206NA
431/AA/1057:1058,1/AA/1199:1203NA
441/AA/1060:1061,1/AA/1195:1197NA
451/AA/1061:1063,1/AA/1193:1195NA
461/AA/1124:1127,1/AA/1145:1149NA
471/AA/1129:1132,1/AA/1142:1143NA
481/AA/1158:1161,1/AA/1175:1181NA
491/AA/1247:1253,1/AA/1284:1290NA
501/AA/1255:1258,1/AA/1277:1282NA
511/AA/1259:1260,1/AA/1274:1276NA
521/AA/1260:1262,1/AA/1273:1274NA
531/AA/1303:1309,1/AA/1328:1334NA
541/AA/1399:1401,1/AA/1501:1504NA
551/AA/1401:1404,1/AA/1497:1501NA
561/AA/1405:1407,1/AA/1494:1496NA
571/AA/1407:1409,1/AA/1491:1494NA
581/AA/1412:1414,1/AA/1486:1488NA
591/AA/1416:1419,1/AA/1481:1484NA
601/AA/1431:1435,1/AA/1466:1469NA
611/AA/1435:1437,1/AA/1464:1466NA
621/AA/1440:1443,1/AA/1459:1461NA
631/BA/24:30,1/BA/510:516NA
641/BA/36:37,1/BA/442:444NA
651/BA/42:44,1/BA/433:436NA
661/BA/81:85,1/BA/97:105NA
671/BA/183:184,1/BA/212:214NA
681/BA/188:194,1/BA/201:208NA
691/BA/239:245,1/BA/253:258NA
701/BA/271I:271J,1/BA/271M:271ONA
711/BA/272D:272E,1/BA/363E:364NA
721/BA/280:284,1/BA/357:360NA
731/BA/288:290,1/BA/350:353NA
741/BA/293:295,1/BA/343:347NA
751/BA/481:484,1/BA/496:509NA
761/BA/564:566,1/BA/575:577NA
771/BA/606:610,1/BA/618:622NA
781/BA/672:674,1/BA/806:808NA
791/BA/674:678,1/BA/799:806NA
801/BA/697:698,1/BA/763:765NA
811/BA/702:703,1/BA/728:730NA
821/BA/703:707,1/BA/724:728NA
831/BA/738:741,1/BA/756:758NA
841/BA/775:777,1/BA/787:791NA
851/BA/837:838,1/BA/940:942NA
861/BA/844:846,1/BA/931:934NA
871/BA/846:850,1/BA/927:931NA
881/BA/858:862,1/BA/915:919NA
891/BA/862:863,1/BA/913:915NA
901/BA/864:868,1/BA/909:912NA
911/BA/870:872,1/BA/905:907NA
921/BA/875:877,1/BA/899:902NA
931/BA/877:879,1/BA/898:899NA
941/BA/952:954,1/BA/963:965NA
951/BA/994:996,1/BA/1159:1160NA
961/BA/998:1002,1/BA/1153:1157NA
971/BA/1004:1011,1/BA/1150:1151NA
981/BA/1011:1013,1/BA/1149:1150NA
991/BA/1018:1024,1/BA/1140:1144NA
1001/BA/1024:1030,1/BA/1124:1140NA
1011/BA/1031:1034,1/BA/1121:1123NA
1021/BA/1043:1052,1/BA/1107:1112NA
1031/BA/1196:1198,1/BA/1247:1250NA
1041/BA/1202:1206,1/BA/1240:1243NA
1051/BA/1208:1215,1/BA/1234:1238NA
1061/BA/1219:1221,1/BA/1229:1230NA
1071/BA/1262:1269,1/BA/2011:2017NA
1081/BA/1310:1313,1/BA/1603:1604NA
1091/BA/1319:1323,1/BA/1331:1333NA
1101/BA/1351:1355,1/BA/1376:1380NA
1111/BA/1357:1361,1/BA/1370:1374NA
1121/BA/1415:1416,1/BA/1582:1587NA
1131/BA/1417:1421,1/BA/1577:1581NA
1141/BA/1433:1435,1/BA/1557:1560NA
1151/BA/1437:1440,1/BA/1551:1555NA
1161/BA/1448:1450,1/BA/1462:1463NA
1171/BA/1469:1473,1/BA/1518:1523NA
1181/BA/1481:1482,1/BA/1506:1510NA
1191/BA/1489:1491,1/BA/1499:1500NA
1201/BA/1526:1529,1/BA/1540:1546NA
1211/BA/1651:1656,1/BA/2004:2006NA
1221/BA/1663:1665,1/BA/1995:1997NA
1231/BA/1666:1669,1/BA/1993:1994NA
1241/BA/1669:1674,1/BA/1990:1993NA
1251/BA/1686:1691,1/BA/1696:1702NA
1261/BA/1770:1771,1/BA/1980:1982NA
1271/BA/1798:1804,1/BA/1813:1821NA
1281/BA/1837:1840,1/BA/1902:1903NA
1291/BA/1841:1842,1/BA/1898:1901NA
1301/BA/1846:1849,1/BA/1893:1894NA
1311/BA/1851:1855,1/BA/1887:1891NA
1321/BA/1856:1860,1/BA/1882:1886NA
1331/BA/1933:1934,1/BA/1964:1967NA
1341/BA/1934:1945,1/BA/1961:1964NA
1351/BA/2050:2052,1/BA/2617:2618NA
1361/BA/2054:2057,1/BA/2611:2615NA
1371/BA/2067:2069,1/BA/2442:2443NA
1381/BA/2070:2071,1/BA/2438:2441NA
1391/BA/2081:2083,1/BA/2236:2239NA
1401/BA/2085:2087,1/BA/2232:2234NA
1411/BA/2101:2103,1/BA/2186:2188NA
1421/BA/2108:2120,1/BA/2178:2181NA
1431/BA/2122:2124,1/BA/2174:2176NA
1441/BA/2124:2127,1/BA/2161:2174NA
1451/BA/2129:2136,1/BA/2155:2159NA
1461/BA/2139:2141,1/BA/2150:2152NA
1471/BA/2141:2143,1/BA/2148:2150NA
1481/BA/2297:2299,1/BA/2317:2321NA
1491/BA/2350:2353,1/BA/2364:2367NA
1501/BA/2401:2403,1/BA/2414:2415NA
1511/BA/2453:2454,1/BA/2498:2500NA
1521/BA/2454:2455,1/BA/2496:2498NA
1531/BA/2457:2459,1/BA/2493:2494NA
1541/BA/2459:2461,1/BA/2489:2493NA
1551/BA/2466:2470,1/BA/2480:2484NA
1561/BA/2507:2508,1/BA/2580:2582NA
1571/BA/2510:2512,1/BA/2574:2578NA
1581/BA/2512:2513,1/BA/2571:2574NA
1591/BA/2522:2523,1/BA/2540:2543NA
1601/BA/2591:2592,1/BA/2601:2603NA
1611/BA/2636:2640,1/BA/2774:2782NA
1621/BA/2652:2658,1/BA/2663:2668NA
1631/BA/2680:2684,1/BA/2725:2727NA
1641/BA/2687:2691,1/BA/2718:2722NA
1651/BA/2695:2696,1/BA/2711:2714NA
1661/BA/2737:2742,1/BA/2762:2767NA
1671/BA/2838:2839,1/BA/2878:2880NA
1681/BA/2843:2846,1/BA/2870:2874NA
1691/BA/2847:2852,1/BA/2865:2869NA
1701/BB/17:18,1/BB/65:67NA
1711/BB/20:22,1/BB/61:63NA
1721/BB/23:28,1/BB/56:60NA
1731/BB/30:32,1/BB/50:54NA
1741/BB/34:38,1/BB/44:48NA
1751/BB/71:79,1/BB/98:106NA
1761/BB/80:82,1/BB/95:97NA

Problematic loops

#loop idProblemSequence
1CUC,GAG
2272, 272, 274, 275, 279, 361, 362, 363, 363
3880, 881, 895, 896, 897
4881, 882, 883, 893, 894, 895
51059, 1060, 1062, 1063, 1064, 1074, 1075, 1076, 1077, 1078, 1079
61087, 1088, 1089, 1090, 1091, 1100, 1101, 1102
7GGG,CCC
8GGGA,UCCC
91907, 1909, 1921, 1922, 1923
10CGC,GCG
11CCC,GGG

Valid loops

#loop idlocationmotif
11/AA/12:22NA
21/AA/77:92NA
31/AA/158:163NA
41/AA/189C:189HNA
51/AA/201:216NA
61/AA/259:267NA
71/AA/296:301NA
81/AA/320:333NA
91/AA/342:347NA
101/AA/379:384NA
111/AA/419:424NA
121/AA/458:473NA
131/AA/522:527NA
141/AA/617:623NA
151/AA/689:698NA
161/AA/726:731NA
171/AA/786:796NA
181/AA/838:848NA
191/AA/862:867NA
201/AA/897:902NA
211/AA/963:972NA
221/AA/1012:1017NA
231/AA/1076:1081NA
241/AA/1089:1096NA
251/AA/1134:1140NA
261/AA/1165:1171NA
271/AA/1265:1270NA
281/AA/1314:1323NA
291/AA/1356:1366NA
301/AA/1445:1457NA
311/AA/1515:1520NA
321/AV/31:39NA
331/BA/59:68NA
341/BA/87:95NA
351/BA/123:128NA
361/BA/139:142ANA
371/BA/194:201NA
381/BA/225:230NA
391/BA/246:252NA
401/BA/271J:271MNA
411/BA/305:312NA
421/BA/319:323NA
431/BA/327:335NA
441/BA/382:392NA
451/BA/410:417NA
461/BA/462:467NA
471/BA/487:493NA
481/BA/566:575NA
491/BA/612:615NA
501/BA/629:634NA
511/BA/641:647NA
521/BA/712:719NA
531/BA/744:753NA
541/BA/779:785NA
551/BA/826:831NA
561/BA/955:962NA
571/BA/978:985NA
581/BA/1170:1179NA
591/BA/1222:1227NA
601/BA/1281:1289NA
611/BA/1324:1330NA
621/BA/1363:1368NA
631/BA/1389:1398NA
641/BA/1450A:1461NA
651/BA/1492:1498NA
661/BA/1565:1568NA
671/BA/1612:1619NA
681/BA/1631:1635NA
691/BA/1691:1696NA
701/BA/1719:1743NA
711/BA/1752:1756NA
721/BA/1777:1787NA
731/BA/1806:1811NA
741/BA/1864:1878NA
751/BA/1909:1921NA
761/BA/1949:1957NA
771/BA/2027:2036NA
781/BA/2143:2148NA
791/BA/2205:2219NA
801/BA/2248:2256NA
811/BA/2264:2276NA
821/BA/2303:2313NA
831/BA/2324:2331NA
841/BA/2355:2362NA
851/BA/2374:2379NA
861/BA/2404:2413NA
871/BA/2471:2479NA
881/BA/2528:2535NA
891/BA/2551:2557NA
901/BA/2594:2599NA
911/BA/2658:2663NA
921/BA/2701:2706NA
931/BA/2745:2759NA
941/BA/2819:2827NA
951/BA/2856:2861NA
961/BB/38:44NA
971/BB/86:91NA

Problematic loops

#loop idProblemSequence
113, 14, 15, 18, 19, 20, 21, 22
253, 54, 55, 56, 57, 58, 59, 60, 61
3154, 154, 157, 158, 171, 172
4543, 547, 548, 549
5883, 884, 885, 886, 887, 888, 889, 890, 892, 893
61064, 1065, 1066, 1067, 1068, 1069, 1070, 1071, 1072, 1073, 1074
71092, 1093, 1094, 1095, 1096, 1097, 1098, 1099
81531, 1532, 1538
92792, 2793, 2794, 2795, 2801, 2801, 2802, 2803, 2804

Valid loops

#loop idlocationmotif
11/AA/826:829,1/AA/857:861,1/AA/868:874NA
21/AA/936:939,1/AA/1344:1350,1/AA/1372:1379NA
31/AA/943:946,1/AA/1235:1237,1/AA/1337:1340NA
41/AA/955:962,1/AA/973:984,1/AA/1221:1225NA
51/AA/990:993,1/AA/1045:1047,1/AA/1210:1215NA
61/AA/1063:1068,1/AA/1107:1113,1/AA/1187:1193NA
71/AA/1116:1118,1/AA/1155:1158,1/AA/1181:1184NA
81/AA/1237:1241,1/AA/1296:1303,1/AA/1334:1337NA
91/BA/683:689,1/BA/773:775,1/BA/791:794NA
101/BA/698:700,1/BA/732:736,1/BA/760:763NA
111/BA/1298:1303,1/BA/1625:1627,1/BA/1639:1642NA
121/BA/1306:1309,1/BA/1605:1611,1/BA/1620:1622NA
131/BA/2091:2093,1/BA/2196:2200,1/BA/2223:2228NA
141/BA/2295:2297,1/BA/2321:2323,1/BA/2332:2337NA
151/BA/2517:2520,1/BA/2545:2547,1/BA/2561:2567NA
161/BB/11:16,1/BB/68:70,1/BB/107:110NA

Problematic loops

#loop idProblemSequence
11055, 1056, 1057, 1081, 1082, 1083, 1084, 1085, 1086, 1087, 1102, 1103, 1104

Coloring options: