5ZEP Internal, hairpin and 3-way junction loop motifs

188 Internal loops
109 Hairpin loops
29 Junction loops

Valid loops

#	loop id	location	motif
1	IL_5ZEP_001 ➜	1/A/21:27,1/A/597:603	NA
2	IL_5ZEP_002 ➜	1/A/33:34,1/A/530:532	NA
3	IL_5ZEP_003 ➜	1/A/40:41,1/A/522:524	NA
4	IL_5ZEP_004 ➜	1/A/78:82,1/A/95:102	NA
5	IL_5ZEP_005 ➜	1/A/182:183,1/A/211:213	NA
6	IL_5ZEP_006 ➜	1/A/187:193,1/A/200:207	NA
7	IL_5ZEP_007 ➜	1/A/239:245,1/A/253:258	NA
8	IL_5ZEP_008 ➜	1/A/322:325,1/A/450:454	NA
9	IL_5ZEP_009 ➜	1/A/325:329,1/A/446:450	NA
10	IL_5ZEP_010 ➜	1/A/356:364,1/A/438:439	NA
11	IL_5ZEP_011 ➜	1/A/369:371,1/A/432:433	NA
12	IL_5ZEP_012 ➜	1/A/374:376,1/A/425:429	NA
13	IL_5ZEP_013 ➜	1/A/382:384,1/A/397:398	NA
14	IL_5ZEP_014 ➜	1/A/569:572,1/A/583:596	NA
15	IL_5ZEP_015 ➜	1/A/623:626,1/A/646:649	NA
16	IL_5ZEP_016 ➜	1/A/630:631,1/A/640:642	NA
17	IL_5ZEP_017 ➜	1/A/656:658,1/A/667:669	NA
18	IL_5ZEP_018 ➜	1/A/683:685,1/A/780:781	NA
19	IL_5ZEP_019 ➜	1/A/699:703,1/A/712:716	NA
20	IL_5ZEP_020 ➜	1/A/787:789,1/A/921:923	NA
21	IL_5ZEP_021 ➜	1/A/789:793,1/A/914:921	NA
22	IL_5ZEP_022 ➜	1/A/812:813,1/A/878:880	NA
23	IL_5ZEP_023 ➜	1/A/817:818,1/A/843:845	NA
24	IL_5ZEP_024 ➜	1/A/818:822,1/A/839:843	NA
25	IL_5ZEP_025 ➜	1/A/853:855,1/A/872:873	NA
26	IL_5ZEP_026 ➜	1/A/890:892,1/A/902:906	NA
27	IL_5ZEP_027 ➜	1/A/952:953,1/A/1057:1059	NA
28	IL_5ZEP_028 ➜	1/A/959:961,1/A/1048:1051	NA
29	IL_5ZEP_029 ➜	1/A/961:964,1/A/1043:1048	NA
30	IL_5ZEP_030 ➜	1/A/971:977,1/A/1030:1036	NA
31	IL_5ZEP_031 ➜	1/A/977:978,1/A/1028:1030	NA
32	IL_5ZEP_032 ➜	1/A/979:984,1/A/1024:1027	NA
33	IL_5ZEP_033 ➜	1/A/986:988,1/A/1020:1022	NA
34	IL_5ZEP_034 ➜	1/A/991:996,1/A/1012:1017	NA
35	IL_5ZEP_035 ➜	1/A/996:999,1/A/1008:1012	NA
36	IL_5ZEP_036 ➜	1/A/1066:1067,1/A/1084:1086	NA
37	IL_5ZEP_037 ➜	1/A/1112:1114,1/A/1278:1279	NA
38	IL_5ZEP_038 ➜	1/A/1116:1120,1/A/1272:1276	NA
39	IL_5ZEP_039 ➜	1/A/1122:1129,1/A/1269:1270	NA
40	IL_5ZEP_040 ➜	1/A/1129:1131,1/A/1268:1269	NA
41	IL_5ZEP_041 ➜	1/A/1136:1142,1/A/1258:1263	NA
42	IL_5ZEP_042 ➜	1/A/1142:1148,1/A/1242:1258	NA
43	IL_5ZEP_043 ➜	1/A/1149:1152,1/A/1239:1241	NA
44	IL_5ZEP_044 ➜	1/A/1156:1158,1/A/1233:1235	NA
45	IL_5ZEP_045 ➜	1/A/1161:1169,1/A/1226:1230	NA
46	IL_5ZEP_046 ➜	1/A/1177:1180,1/A/1194:1197	NA
47	IL_5ZEP_047 ➜	1/A/1205:1209,1/A/1218:1220	NA
48	IL_5ZEP_048 ➜	1/A/1311:1313,1/A/1362:1365	NA
49	IL_5ZEP_049 ➜	1/A/1322:1329,1/A/1349:1353	NA
50	IL_5ZEP_050 ➜	1/A/1333:1334,1/A/1343:1345	NA
51	IL_5ZEP_051 ➜	1/A/1377:1384,1/A/2235:2241	NA
52	IL_5ZEP_052 ➜	1/A/1425:1428,1/A/1821:1822	NA
53	IL_5ZEP_053 ➜	1/A/1434:1438,1/A/1446:1448	NA
54	IL_5ZEP_054 ➜	1/A/1466:1470,1/A/1491:1495	NA
55	IL_5ZEP_055 ➜	1/A/1472:1476,1/A/1485:1489	NA
56	IL_5ZEP_056 ➜	1/A/1529:1531,1/A/1804:1806	NA
57	IL_5ZEP_057 ➜	1/A/1540:1543,1/A/1627:1632	NA
58	IL_5ZEP_058 ➜	1/A/1550:1557,1/A/1614:1620	NA
59	IL_5ZEP_059 ➜	1/A/1559:1562,1/A/1609:1612	NA
60	IL_5ZEP_060 ➜	1/A/1638:1642,1/A/1797:1800	NA
61	IL_5ZEP_061 ➜	1/A/1653:1656,1/A/1777:1781	NA
62	IL_5ZEP_062 ➜	1/A/1658:1661,1/A/1771:1775	NA
63	IL_5ZEP_063 ➜	1/A/1689:1692,1/A/1742:1746	NA
64	IL_5ZEP_064 ➜	1/A/1694:1699,1/A/1735:1740	NA
65	IL_5ZEP_065 ➜	1/A/1702:1703,1/A/1726:1732	NA
66	IL_5ZEP_066 ➜	1/A/1709:1711,1/A/1719:1720	NA
67	IL_5ZEP_067 ➜	1/A/1748:1751,1/A/1762:1766	NA
68	IL_5ZEP_068 ➜	1/A/1869:1874,1/A/2228:2230	NA
69	IL_5ZEP_069 ➜	1/A/1881:1883,1/A/2219:2221	NA
70	IL_5ZEP_070 ➜	1/A/1884:1887,1/A/2217:2218	NA
71	IL_5ZEP_071 ➜	1/A/1887:1892,1/A/2214:2217	NA
72	IL_5ZEP_072 ➜	1/A/1904:1909,1/A/1914:1920	NA
73	IL_5ZEP_073 ➜	1/A/1930:1934,1/A/1960:1963	NA
74	IL_5ZEP_074 ➜	1/A/1937:1942,1/A/1952:1957	NA
75	IL_5ZEP_075 ➜	1/A/1987:1988,1/A/2204:2206	NA
76	IL_5ZEP_076 ➜	1/A/2015:2021,1/A/2030:2038	NA
77	IL_5ZEP_077 ➜	1/A/2054:2057,1/A/2126:2127	NA
78	IL_5ZEP_078 ➜	1/A/2058:2059,1/A/2122:2125	NA
79	IL_5ZEP_079 ➜	1/A/2063:2066,1/A/2117:2118	NA
80	IL_5ZEP_080 ➜	1/A/2068:2073,1/A/2110:2115	NA
81	IL_5ZEP_081 ➜	1/A/2073:2078,1/A/2105:2110	NA
82	IL_5ZEP_082 ➜	1/A/2081:2084,1/A/2098:2102	NA
83	IL_5ZEP_083 ➜	1/A/2157:2158,1/A/2188:2191	NA
84	IL_5ZEP_084 ➜	1/A/2158:2169,1/A/2185:2188	NA
85	IL_5ZEP_085 ➜	1/A/2274:2276,1/A/2841:2842	NA
86	IL_5ZEP_086 ➜	1/A/2278:2280,1/A/2836:2839	NA
87	IL_5ZEP_087 ➜	1/A/2293:2294,1/A/2662:2665	NA
88	IL_5ZEP_088 ➜	1/A/2304:2306,1/A/2460:2463	NA
89	IL_5ZEP_089 ➜	1/A/2308:2310,1/A/2456:2458	NA
90	IL_5ZEP_090 ➜	1/A/2317:2319,1/A/2416:2418	NA
91	IL_5ZEP_091 ➜	1/A/2330:2345,1/A/2399:2405	NA
92	IL_5ZEP_092 ➜	1/A/2347:2351,1/A/2383:2397	NA
93	IL_5ZEP_093 ➜	1/A/2352:2359,1/A/2378:2382	NA
94	IL_5ZEP_094 ➜	1/A/2425:2427,1/A/2444:2445	NA
95	IL_5ZEP_095 ➜	1/A/2521:2523,1/A/2541:2545	NA
96	IL_5ZEP_096 ➜	1/A/2574:2577,1/A/2588:2591	NA
97	IL_5ZEP_097 ➜	1/A/2625:2627,1/A/2638:2639	NA
98	IL_5ZEP_098 ➜	1/A/2677:2678,1/A/2722:2724	NA
99	IL_5ZEP_099 ➜	1/A/2678:2679,1/A/2720:2722	NA
100	IL_5ZEP_100 ➜	1/A/2680:2683,1/A/2717:2719	NA
101	IL_5ZEP_101 ➜	1/A/2683:2685,1/A/2713:2717	NA
102	IL_5ZEP_102 ➜	1/A/2685:2687,1/A/2711:2713	NA
103	IL_5ZEP_103 ➜	1/A/2690:2694,1/A/2704:2708	NA
104	IL_5ZEP_104 ➜	1/A/2731:2732,1/A/2804:2806	NA
105	IL_5ZEP_105 ➜	1/A/2734:2736,1/A/2798:2802	NA
106	IL_5ZEP_106 ➜	1/A/2736:2737,1/A/2795:2798	NA
107	IL_5ZEP_107 ➜	1/A/2746:2747,1/A/2764:2767	NA
108	IL_5ZEP_108 ➜	1/A/2815:2816,1/A/2825:2827	NA
109	IL_5ZEP_109 ➜	1/A/2860:2864,1/A/2998:3006	NA
110	IL_5ZEP_110 ➜	1/A/2876:2882,1/A/2887:2892	NA
111	IL_5ZEP_111 ➜	1/A/2904:2908,1/A/2949:2951	NA
112	IL_5ZEP_112 ➜	1/A/2911:2915,1/A/2942:2946	NA
113	IL_5ZEP_113 ➜	1/A/2919:2920,1/A/2935:2938	NA
114	IL_5ZEP_114 ➜	1/A/2961:2966,1/A/2986:2991	NA
115	IL_5ZEP_115 ➜	1/A/3059:3061,1/A/3098:3101	NA
116	IL_5ZEP_116 ➜	1/A/3064:3066,1/A/3092:3095	NA
117	IL_5ZEP_117 ➜	1/A/3068:3073,1/A/3086:3090	NA
118	IL_5ZEP_119 ➜	1/B/6:9,1/B/108:111	NA
119	IL_5ZEP_120 ➜	1/B/29:31,1/B/51:55	NA
120	IL_5ZEP_121 ➜	1/B/31:34,1/B/48:51	NA
121	IL_5ZEP_122 ➜	1/a/34:36,1/a/532:533	NA
122	IL_5ZEP_123 ➜	1/a/48:49,1/a/396:398	NA
123	IL_5ZEP_124 ➜	1/a/51:56,1/a/359:361	NA
124	IL_5ZEP_125 ➜	1/a/58:60,1/a/356:357	NA
125	IL_5ZEP_126 ➜	1/a/67:70,1/a/99:100	NA
126	IL_5ZEP_127 ➜	1/a/71:73,1/a/95:98	NA
127	IL_5ZEP_128 ➜	1/a/74:77,1/a/93:94	NA
128	IL_5ZEP_129 ➜	1/a/77:78,1/a/91:93	NA
129	IL_5ZEP_130 ➜	1/a/125:128,1/a/231:232	NA
130	IL_5ZEP_131 ➜	1/a/129:133,1/a/227:230	NA
131	IL_5ZEP_132 ➜	1/a/144:150,1/a/165:172	NA
132	IL_5ZEP_133 ➜	1/a/187:188,1/a/199:201	NA
133	IL_5ZEP_134 ➜	1/a/242:247,1/a/277:284	NA
134	IL_5ZEP_135 ➜	1/a/249:252,1/a/274:275	NA
135	IL_5ZEP_136 ➜	1/a/292:293,1/a/304:308	NA
136	IL_5ZEP_137 ➜	1/a/367:369,1/a/392:393	NA
137	IL_5ZEP_138 ➜	1/a/371:375,1/a/389:390	NA
138	IL_5ZEP_139 ➜	1/a/375:376,1/a/387:389	NA
139	IL_5ZEP_140 ➜	1/a/409:416,1/a/427:433	NA
140	IL_5ZEP_141 ➜	1/a/440:442,1/a/472:477	NA
141	IL_5ZEP_142 ➜	1/a/446:450,1/a/463:468	NA
142	IL_5ZEP_143 ➜	1/a/450:453,1/a/460:463	NA
143	IL_5ZEP_144 ➜	1/a/484:491,1/a/520:521	NA
144	IL_5ZEP_145 ➜	1/a/495:501,1/a/508:516	NA
145	IL_5ZEP_146 ➜	1/a/549:555,1/a/862:863	NA
146	IL_5ZEP_147 ➜	1/a/560:564,1/a/737:741	NA
147	IL_5ZEP_148 ➜	1/a/574:576,1/a/624:625	NA
148	IL_5ZEP_149 ➜	1/a/577:578,1/a/620:623	NA
149	IL_5ZEP_150 ➜	1/a/585:591,1/a/609:613	NA
150	IL_5ZEP_151 ➜	1/a/634:635,1/a/731:734	NA
151	IL_5ZEP_152 ➜	1/a/637:638,1/a/727:729	NA
152	IL_5ZEP_153 ➜	1/a/642:646,1/a/720:723	NA
153	IL_5ZEP_154 ➜	1/a/653:658,1/a/692:697	NA
154	IL_5ZEP_155 ➜	1/a/664:668,1/a/679:686	NA
155	IL_5ZEP_156 ➜	1/a/754:758,1/a/784:785	NA
156	IL_5ZEP_157 ➜	1/a/759:763,1/a/779:783	NA
157	IL_5ZEP_158 ➜	1/a/869:876,1/a/887:892	NA
158	IL_5ZEP_159 ➜	1/a/904:905,1/a/1376:1378	NA
159	IL_5ZEP_160 ➜	1/a/907:909,1/a/1373:1374	NA
160	IL_5ZEP_161 ➜	1/a/915:917,1/a/1363:1367	NA
161	IL_5ZEP_162 ➜	1/a/935:936,1/a/1207:1209	NA
162	IL_5ZEP_163 ➜	1/a/975:979,1/a/1024:1025	NA
163	IL_5ZEP_164 ➜	1/a/984:985,1/a/1017:1019	NA
164	IL_5ZEP_165 ➜	1/a/1028:1030,1/a/1189:1190	NA
165	IL_5ZEP_166 ➜	1/a/1032:1036,1/a/1185:1187	NA
166	IL_5ZEP_167 ➜	1/a/1037:1038,1/a/1180:1184	NA
167	IL_5ZEP_168 ➜	1/a/1040:1041,1/a/1176:1178	NA
168	IL_5ZEP_169 ➜	1/a/1041:1043,1/a/1174:1176	NA
169	IL_5ZEP_170 ➜	1/a/1104:1108,1/a/1125:1130	NA
170	IL_5ZEP_171 ➜	1/a/1109:1112,1/a/1123:1124	NA
171	IL_5ZEP_172 ➜	1/a/1139:1142,1/a/1156:1162	NA
172	IL_5ZEP_173 ➜	1/a/1228:1234,1/a/1265:1272	NA
173	IL_5ZEP_174 ➜	1/a/1236:1239,1/a/1258:1263	NA
174	IL_5ZEP_175 ➜	1/a/1240:1244,1/a/1253:1257	NA
175	IL_5ZEP_176 ➜	1/a/1285:1290,1/a/1311:1316	NA
176	IL_5ZEP_177 ➜	1/a/1382:1384,1/a/1485:1488	NA
177	IL_5ZEP_178 ➜	1/a/1384:1387,1/a/1481:1485	NA
178	IL_5ZEP_179 ➜	1/a/1388:1390,1/a/1478:1480	NA
179	IL_5ZEP_180 ➜	1/a/1390:1392,1/a/1475:1478	NA
180	IL_5ZEP_181 ➜	1/a/1395:1397,1/a/1470:1472	NA
181	IL_5ZEP_182 ➜	1/a/1399:1402,1/a/1465:1468	NA
182	IL_5ZEP_183 ➜	1/a/1407:1410,1/a/1457:1460	NA
183	IL_5ZEP_184 ➜	1/a/1413:1418,1/a/1450:1454	NA
184	IL_5ZEP_185 ➜	1/a/1418:1420,1/a/1448:1450	NA
185	IL_5ZEP_186 ➜	1/a/1423:1426,1/a/1443:1445	NA
186	IL_5ZEP_187 ➜	1/a/1428:1431,1/a/1439:1441	NA
187	IL_5ZEP_188 ➜	1/a/1432:1433,1/a/1436:1438	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_5ZEP_118 ➜	missing nts	1, 2, 3, 4, 5, 6, 111, 112, 113, 114, 115, 116

Valid loops

#	loop id	location	motif
1	HL_5ZEP_001 ➜	1/A/56:65	NA
2	HL_5ZEP_002 ➜	1/A/84:93	NA
3	HL_5ZEP_003 ➜	1/A/120:125	NA
4	HL_5ZEP_004 ➜	1/A/134:141	NA
5	HL_5ZEP_005 ➜	1/A/157:167	NA
6	HL_5ZEP_006 ➜	1/A/193:200	NA
7	HL_5ZEP_007 ➜	1/A/224:230	NA
8	HL_5ZEP_008 ➜	1/A/246:252	NA
9	HL_5ZEP_009 ➜	1/A/283:303	NA
10	HL_5ZEP_011 ➜	1/A/387:394	NA
11	HL_5ZEP_012 ➜	1/A/401:405	NA
12	HL_5ZEP_013 ➜	1/A/409:417	NA
13	HL_5ZEP_014 ➜	1/A/469:481	NA
14	HL_5ZEP_015 ➜	1/A/498:505	NA
15	HL_5ZEP_016 ➜	1/A/550:555	NA
16	HL_5ZEP_017 ➜	1/A/575:580	NA
17	HL_5ZEP_018 ➜	1/A/658:667	NA
18	HL_5ZEP_019 ➜	1/A/705:710	NA
19	HL_5ZEP_020 ➜	1/A/723:728	NA
20	HL_5ZEP_021 ➜	1/A/735:741	NA
21	HL_5ZEP_022 ➜	1/A/755:760	NA
22	HL_5ZEP_023 ➜	1/A/827:834	NA
23	HL_5ZEP_024 ➜	1/A/859:868	NA
24	HL_5ZEP_025 ➜	1/A/894:900	NA
25	HL_5ZEP_026 ➜	1/A/941:946	NA
26	HL_5ZEP_028 ➜	1/A/1072:1079	NA
27	HL_5ZEP_029 ➜	1/A/1096:1103	NA
28	HL_5ZEP_030 ➜	1/A/1182:1192	NA
29	HL_5ZEP_031 ➜	1/A/1210:1217	NA
30	HL_5ZEP_032 ➜	1/A/1290:1293	NA
31	HL_5ZEP_033 ➜	1/A/1336:1341	NA
32	HL_5ZEP_034 ➜	1/A/1396:1404	NA
33	HL_5ZEP_035 ➜	1/A/1439:1445	NA
34	HL_5ZEP_036 ➜	1/A/1478:1483	NA
35	HL_5ZEP_037 ➜	1/A/1504:1513	NA
36	HL_5ZEP_038 ➜	1/A/1581:1590	NA
37	HL_5ZEP_039 ➜	1/A/1671:1682	NA
38	HL_5ZEP_040 ➜	1/A/1712:1718	NA
39	HL_5ZEP_042 ➜	1/A/1785:1788	NA
40	HL_5ZEP_043 ➜	1/A/1830:1837	NA
41	HL_5ZEP_044 ➜	1/A/1848:1854	NA
42	HL_5ZEP_045 ➜	1/A/1909:1914	NA
43	HL_5ZEP_047 ➜	1/A/1969:1973	NA
44	HL_5ZEP_048 ➜	1/A/1994:2004	NA
45	HL_5ZEP_049 ➜	1/A/2023:2028	NA
46	HL_5ZEP_050 ➜	1/A/2089:2093	NA
47	HL_5ZEP_051 ➜	1/A/2134:2144	NA
48	HL_5ZEP_052 ➜	1/A/2173:2181	NA
49	HL_5ZEP_053 ➜	1/A/2251:2260	NA
50	HL_5ZEP_054 ➜	1/A/2366:2371	NA
51	HL_5ZEP_055 ➜	1/A/2432:2439	NA
52	HL_5ZEP_056 ➜	1/A/2472:2480	NA
53	HL_5ZEP_057 ➜	1/A/2488:2500	NA
54	HL_5ZEP_058 ➜	1/A/2527:2537	NA
55	HL_5ZEP_059 ➜	1/A/2548:2555	NA
56	HL_5ZEP_060 ➜	1/A/2579:2586	NA
57	HL_5ZEP_061 ➜	1/A/2598:2603	NA
58	HL_5ZEP_062 ➜	1/A/2628:2637	NA
59	HL_5ZEP_063 ➜	1/A/2695:2703	NA
60	HL_5ZEP_064 ➜	1/A/2752:2759	NA
61	HL_5ZEP_065 ➜	1/A/2775:2781	NA
62	HL_5ZEP_066 ➜	1/A/2818:2823	NA
63	HL_5ZEP_067 ➜	1/A/2882:2887	NA
64	HL_5ZEP_068 ➜	1/A/2925:2930	NA
65	HL_5ZEP_069 ➜	1/A/2969:2983	NA
66	HL_5ZEP_070 ➜	1/A/3019:3023	NA
67	HL_5ZEP_071 ➜	1/A/3040:3048	NA
68	HL_5ZEP_072 ➜	1/A/3077:3082	NA
69	HL_5ZEP_073 ➜	1/B/34:48	NA
70	HL_5ZEP_074 ➜	1/B/83:90	NA
71	HL_5ZEP_075 ➜	1/a/16:26	NA
72	HL_5ZEP_076 ➜	1/a/82:87	NA
73	HL_5ZEP_077 ➜	1/a/155:160	NA
74	HL_5ZEP_078 ➜	1/a/191:196	NA
75	HL_5ZEP_079 ➜	1/a/213:218	NA
76	HL_5ZEP_080 ➜	1/a/259:267	NA
77	HL_5ZEP_081 ➜	1/a/296:301	NA
78	HL_5ZEP_082 ➜	1/a/320:333	NA
79	HL_5ZEP_083 ➜	1/a/342:347	NA
80	HL_5ZEP_084 ➜	1/a/379:384	NA
81	HL_5ZEP_085 ➜	1/a/419:424	NA
82	HL_5ZEP_086 ➜	1/a/454:459	NA
83	HL_5ZEP_087 ➜	1/a/502:507	NA
84	HL_5ZEP_088 ➜	1/a/597:603	NA
85	HL_5ZEP_089 ➜	1/a/669:678	NA
86	HL_5ZEP_090 ➜	1/a/706:711	NA
87	HL_5ZEP_091 ➜	1/a/766:776	NA
88	HL_5ZEP_093 ➜	1/a/844:849	NA
89	HL_5ZEP_094 ➜	1/a/879:884	NA
90	HL_5ZEP_095 ➜	1/a/945:954	NA
91	HL_5ZEP_096 ➜	1/a/995:1000	NA
92	HL_5ZEP_097 ➜	1/a/1009:1015	NA
93	HL_5ZEP_098 ➜	1/a/1056:1061	NA
94	HL_5ZEP_099 ➜	1/a/1069:1076	NA
95	HL_5ZEP_100 ➜	1/a/1114:1121	NA
96	HL_5ZEP_101 ➜	1/a/1146:1152	NA
97	HL_5ZEP_102 ➜	1/a/1246:1251	NA
98	HL_5ZEP_103 ➜	1/a/1296:1305	NA
99	HL_5ZEP_104 ➜	1/a/1338:1349	NA
100	HL_5ZEP_105 ➜	1/a/1433:1436	NA
101	HL_5ZEP_106 ➜	1/a/1499:1504	NA
102	HL_5ZEP_107 ➜	1/w/13:23	NA
103	HL_5ZEP_108 ➜	1/w/31:41	NA
104	HL_5ZEP_109 ➜	1/w/52:64	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_5ZEP_010 ➜	missing nts	336, 337, 338, 339, 345
2	HL_5ZEP_027 ➜	missing nts	1001, 1002, 1003, 1006
3	HL_5ZEP_041 ➜	missing nts	1753, 1754, 1755, 1758, 1759, 1760
4	HL_5ZEP_046 ➜	missing nts	1944, 1945, 1949, 1950
5	HL_5ZEP_092 ➜	missing nts	820, 821, 822, 827, 828

Valid loops

#	loop id	location	motif
1	J3_5ZEP_001 ➜	1/A/27:28,1/A/562:569,1/A/596:597	NA
2	J3_5ZEP_002 ➜	1/A/53:54,1/A/67:73,1/A/107:111	NA
3	J3_5ZEP_003 ➜	1/A/317:319,1/A/457:463,1/A/487:492	NA
4	J3_5ZEP_004 ➜	1/A/329:331,1/A/350:352,1/A/443:446	NA
5	J3_5ZEP_005 ➜	1/A/798:804,1/A/888:890,1/A/906:909	NA
6	J3_5ZEP_006 ➜	1/A/813:815,1/A/847:851,1/A/875:878	NA
7	J3_5ZEP_007 ➜	1/A/1173:1175,1/A/1199:1205,1/A/1220:1222	NA
8	J3_5ZEP_008 ➜	1/A/1413:1418,1/A/1843:1845,1/A/1857:1860	NA
9	J3_5ZEP_009 ➜	1/A/1421:1424,1/A/1823:1829,1/A/1838:1840	NA
10	J3_5ZEP_010 ➜	1/A/1459:1465,1/A/1496:1500,1/A/1517:1518	NA
11	J3_5ZEP_011 ➜	1/A/1531:1537,1/A/1635:1637,1/A/1801:1804	NA
12	J3_5ZEP_012 ➜	1/A/1646:1650,1/A/1784:1785,1/A/1788:1793	NA
13	J3_5ZEP_013 ➜	1/A/2314:2316,1/A/2419:2423,1/A/2447:2452	NA
14	J3_5ZEP_014 ➜	1/A/2519:2521,1/A/2545:2547,1/A/2556:2561	NA
15	J3_5ZEP_015 ➜	1/A/2741:2744,1/A/2769:2771,1/A/2785:2791	NA
16	J3_5ZEP_016 ➜	1/A/3035:3037,1/A/3051:3057,1/A/3103:3107	NA
17	J3_5ZEP_017 ➜	1/a/50:51,1/a/361:367,1/a/393:395	NA
18	J3_5ZEP_018 ➜	1/a/566:568,1/a/631:634,1/a/734:735	NA
19	J3_5ZEP_019 ➜	1/a/652:653,1/a/697:705,1/a/712:714	NA
20	J3_5ZEP_020 ➜	1/a/806:809,1/a/839:843,1/a/850:856	NA
21	J3_5ZEP_021 ➜	1/a/918:921,1/a/1326:1332,1/a/1355:1362	NA
22	J3_5ZEP_022 ➜	1/a/925:928,1/a/1216:1218,1/a/1319:1322	NA
23	J3_5ZEP_023 ➜	1/a/937:944,1/a/955:966,1/a/1202:1206	NA
24	J3_5ZEP_024 ➜	1/a/972:975,1/a/1025:1027,1/a/1191:1196	NA
25	J3_5ZEP_025 ➜	1/a/985:989,1/a/1006:1009,1/a/1015:1017	NA
26	J3_5ZEP_026 ➜	1/a/1043:1048,1/a/1087:1093,1/a/1168:1174	NA
27	J3_5ZEP_027 ➜	1/a/1053:1054,1/a/1063:1067,1/a/1078:1082	NA
28	J3_5ZEP_028 ➜	1/a/1096:1098,1/a/1136:1139,1/a/1162:1165	NA
29	J3_5ZEP_029 ➜	1/a/1218:1222,1/a/1278:1285,1/a/1316:1319	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers