Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5ZEP_0011/A/56:65No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_5ZEP_0021/A/84:93No text annotation
Not in a motif group
homologous
HL_4WF9_002
HL_96598.1
HL_5ZEP_0031/A/120:125No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_5ZEP_0041/A/134:141No text annotation
Not in a motif group
homologous
HL_4WF9_004
HL_84085.2
HL_5ZEP_0051/A/157:167No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_5ZEP_0061/A/193:200No text annotation
Not in a motif group
geometric
HL_4WF9_006
HL_06192.2
HL_5ZEP_0071/A/224:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_5ZEP_0081/A/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_5ZEP_0091/A/283:303No text annotation
Not in a motif group
HL_5ZEP_0111/A/387:394No text annotation
Not in a motif group
homologous
HL_7A0S_010
HL_89380.2
HL_5ZEP_0121/A/401:405No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_5ZEP_0131/A/409:417No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_5ZEP_0141/A/469:481No text annotation
Not in a motif group
HL_5ZEP_0151/A/498:505No text annotation
Not in a motif group
homologous
HL_7A0S_014
HL_96598.1
HL_5ZEP_0161/A/550:555GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_5ZEP_0171/A/575:580No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_5ZEP_0181/A/658:667No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_5ZEP_0191/A/705:710No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_5ZEP_0201/A/723:728No text annotation
Not in a motif group
homologous
HL_7A0S_020
HL_42097.1
HL_5ZEP_0211/A/735:741No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_5ZEP_0221/A/755:760No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_5ZEP_0231/A/827:834No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_5ZEP_0241/A/859:868No text annotation
Not in a motif group
homologous
HL_7A0S_022
HL_39334.6
HL_5ZEP_0251/A/894:900No text annotation
Not in a motif group
homologous
HL_5J7L_156
HL_74322.1
HL_5ZEP_0261/A/941:946No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_5ZEP_0281/A/1072:1079No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_5ZEP_0291/A/1096:1103No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_5ZEP_0301/A/1182:1192No text annotation
Not in a motif group
homologous
HL_5J7L_161
HL_07145.1
HL_5ZEP_0311/A/1210:1217No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_5ZEP_0321/A/1290:1293No text annotation
Not in a motif group
HL_5ZEP_0331/A/1336:1341No text annotation
Not in a motif group
homologous
HL_7A0S_031
HL_87030.2
HL_5ZEP_0341/A/1396:1404T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_5ZEP_0351/A/1439:1445No text annotation
Not in a motif group
homologous
HL_4WF9_033
HL_46680.1
HL_5ZEP_0361/A/1478:1483No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_5ZEP_0371/A/1504:1513No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_5ZEP_0381/A/1581:1590No text annotation
Not in a motif group
geometric
HL_5TBW_021
HL_33817.1
HL_5ZEP_0391/A/1671:1682No text annotation
Not in a motif group
HL_5ZEP_0401/A/1712:1718No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_5ZEP_0421/A/1785:1788No text annotation
Not in a motif group
geometric
HL_7A0S_039
HL_38927.2
HL_5ZEP_0431/A/1830:1837No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_5ZEP_0441/A/1848:1854GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_5ZEP_0451/A/1909:1914UNCG
Not in a motif group
geometric
HL_5Y85_004
HL_03562.2
HL_5ZEP_0471/A/1969:1973No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_5ZEP_0481/A/1994:2004No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_5ZEP_0491/A/2023:2028No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_5ZEP_0501/A/2089:2093No text annotation
Not in a motif group
homologous
HL_4WF9_045
NA
HL_5ZEP_0511/A/2134:2144No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_5ZEP_0521/A/2173:2181No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_5ZEP_0531/A/2251:2260No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_5ZEP_0541/A/2366:2371No text annotation
Not in a motif group
homologous
HL_5J7L_184
NA
HL_5ZEP_0551/A/2432:2439No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5ZEP_0561/A/2472:2480No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_5ZEP_0571/A/2488:2500No text annotation
Not in a motif group
homologous
HL_5J7L_187
HL_19870.6
HL_5ZEP_0581/A/2527:2537No text annotation
Not in a motif group
homologous
HL_5J7L_188
HL_11805.3
HL_5ZEP_0591/A/2548:2555No text annotation
Not in a motif group
homologous
HL_4WF9_052
HL_12078.2
HL_5ZEP_0601/A/2579:2586No text annotation
Not in a motif group
homologous
HL_4WF9_053
HL_09136.1
HL_5ZEP_0611/A/2598:2603No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_5ZEP_0621/A/2628:2637No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_5ZEP_0631/A/2695:2703No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_5ZEP_0641/A/2752:2759No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_5ZEP_0651/A/2775:2781No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_5ZEP_0661/A/2818:2823No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_5ZEP_0671/A/2882:2887No text annotation
Not in a motif group
homologous
HL_7RQB_064
HL_42097.1
HL_5ZEP_0681/A/2925:2930Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5ZEP_0691/A/2969:2983No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_5ZEP_0701/A/3019:3023No text annotation
Not in a motif group
HL_5ZEP_0711/A/3040:3048No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_5ZEP_0721/A/3077:3082Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1
HL_5ZEP_0731/B/34:48No text annotation
Not in a motif group
HL_5ZEP_0741/B/83:90No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_47100.1
HL_5ZEP_0751/a/16:26No text annotation
Not in a motif group
homologous
HL_5J7L_001
HL_89881.2
HL_5ZEP_0761/a/82:87No text annotation
Not in a motif group
HL_5ZEP_0771/a/155:160GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_5ZEP_0781/a/191:196No text annotation
Not in a motif group
HL_5ZEP_0791/a/213:218No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_5ZEP_0801/a/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_5ZEP_0811/a/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_5ZEP_0821/a/320:333No text annotation
Not in a motif group
HL_5ZEP_0831/a/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_5ZEP_0841/a/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_5ZEP_0851/a/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_5ZEP_0861/a/454:459No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_5ZEP_0871/a/502:507No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_75407.1
HL_5ZEP_0881/a/597:603No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_5ZEP_0891/a/669:678No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_5ZEP_0901/a/706:711Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_5ZEP_0911/a/766:776No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_5ZEP_0931/a/844:849GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_5ZEP_0941/a/879:884GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_5ZEP_0951/a/945:954No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_5ZEP_0961/a/995:1000GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_5ZEP_0971/a/1009:1015No text annotation
Not in a motif group
HL_5ZEP_0981/a/1056:1061GNRA
Not in a motif group
homologous
HL_4LFB_024
HL_42097.1
HL_5ZEP_0991/a/1069:1076No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_5ZEP_1001/a/1114:1121No text annotation
Not in a motif group
homologous
HL_6CZR_097
NA
HL_5ZEP_1011/a/1146:1152GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_5ZEP_1021/a/1246:1251Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_5ZEP_1031/a/1296:1305No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_5ZEP_1041/a/1338:1349No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5ZEP_1051/a/1433:1436No text annotation
Not in a motif group
HL_5ZEP_1061/a/1499:1504No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_5ZEP_1071/w/13:23No text annotation
Not in a motif group
homologous
HL_4TUE_033
HL_25462.2
HL_5ZEP_1081/w/31:41No text annotation
Not in a motif group
homologous
HL_5IB8_208
NA
HL_5ZEP_1091/w/52:64No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_5ZEP_010No text annotation
HL_5ZEP_027No text annotation
HL_5ZEP_041No text annotation
HL_5ZEP_046No text annotation
HL_5ZEP_092No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5ZEP_0011/A/21:27,
1/A/597:603
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.6
IL_5ZEP_0021/A/33:34,
1/A/530:532
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_5ZEP_0031/A/40:41,
1/A/522:524
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_5ZEP_0041/A/78:82,
1/A/95:102
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_5ZEP_0051/A/182:183,
1/A/211:213
Single stack bend
Not in a motif group
homologous
IL_4WF9_007
IL_76488.2
IL_5ZEP_0061/A/187:193,
1/A/200:207
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_006
IL_04346.7
IL_5ZEP_0071/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_5ZEP_0081/A/322:325,
1/A/450:454
No text annotation
Not in a motif group
IL_5ZEP_0091/A/325:329,
1/A/446:450
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_5ZEP_0101/A/356:364,
1/A/438:439
No text annotation
Not in a motif group
IL_5ZEP_0111/A/369:371,
1/A/432:433
Single bulged U
Not in a motif group
geometric
IL_4V9F_107
IL_83039.13
IL_5ZEP_0121/A/374:376,
1/A/425:429
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_5ZEP_0131/A/382:384,
1/A/397:398
Single bulged U
Not in a motif group
geometric
IL_3TZR_002
IL_83039.13
IL_5ZEP_0141/A/569:572,
1/A/583:596
No text annotation
Not in a motif group
homologous
IL_4WF9_015
IL_60992.6
IL_5ZEP_0151/A/623:626,
1/A/646:649
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_5ZEP_0161/A/630:631,
1/A/640:642
No text annotation
Not in a motif group
IL_5ZEP_0171/A/656:658,
1/A/667:669
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_5ZEP_0181/A/683:685,
1/A/780:781
Single bulged A
Not in a motif group
homologous
IL_7A0S_012
IL_37497.2
IL_5ZEP_0191/A/699:703,
1/A/712:716
AAA cross-strand stack
Not in a motif group
homologous
IL_7A0S_013
IL_17136.1
IL_5ZEP_0201/A/787:789,
1/A/921:923
No text annotation
Not in a motif group
geometric
IL_4WF9_020
IL_95997.1
IL_5ZEP_0211/A/789:793,
1/A/914:921
No text annotation
Not in a motif group
homologous
IL_7RQB_018
IL_17470.6
IL_5ZEP_0221/A/812:813,
1/A/878:880
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_37497.2
IL_5ZEP_0231/A/817:818,
1/A/843:845
Single bulged G
Not in a motif group
geometric
IL_4V9F_026
IL_00225.2
IL_5ZEP_0241/A/818:822,
1/A/839:843
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_5ZEP_0251/A/853:855,
1/A/872:873
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.1
IL_5ZEP_0261/A/890:892,
1/A/902:906
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_5ZEP_0271/A/952:953,
1/A/1057:1059
Single stack bend
Not in a motif group
homologous
IL_7A0S_022
IL_92001.1
IL_5ZEP_0281/A/959:961,
1/A/1048:1051
Isolated near basepair
Not in a motif group
geometric
IL_4V88_406
IL_52767.2
IL_5ZEP_0291/A/961:964,
1/A/1043:1048
No text annotation
Not in a motif group
IL_5ZEP_0301/A/971:977,
1/A/1030:1036
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_5ZEP_0311/A/977:978,
1/A/1028:1030
Minor groove platform
Not in a motif group
geometric
IL_4V9F_034
IL_42622.2
IL_5ZEP_0321/A/979:984,
1/A/1024:1027
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_5ZEP_0331/A/986:988,
1/A/1020:1022
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_034
IL_52767.2
IL_5ZEP_0341/A/991:996,
1/A/1012:1017
No text annotation
Not in a motif group
geometric
IL_4V88_421
IL_86929.2
IL_5ZEP_0351/A/996:999,
1/A/1008:1012
No text annotation
Not in a motif group
IL_5ZEP_0361/A/1066:1067,
1/A/1084:1086
Single bulged G
Not in a motif group
geometric
IL_4LVW_002
IL_00225.2
IL_5ZEP_0371/A/1112:1114,
1/A/1278:1279
Single bulged C
Not in a motif group
homologous
IL_5J7L_276
IL_61258.12
IL_5ZEP_0381/A/1116:1120,
1/A/1272:1276
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_5ZEP_0391/A/1122:1129,
1/A/1269:1270
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_7RQB_037
IL_15861.7
IL_5ZEP_0401/A/1129:1131,
1/A/1268:1269
No text annotation
Not in a motif group
IL_5ZEP_0411/A/1136:1142,
1/A/1258:1263
No text annotation
Not in a motif group
homologous
IL_7RQB_039
IL_57188.3
IL_5ZEP_0421/A/1142:1148,
1/A/1242:1258
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_5ZEP_0431/A/1149:1152,
1/A/1239:1241
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_282
IL_82068.2
IL_5ZEP_0441/A/1156:1158,
1/A/1233:1235
No text annotation
Not in a motif group
homologous
IL_4WF9_042
IL_95997.1
IL_5ZEP_0451/A/1161:1169,
1/A/1226:1230
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_5ZEP_0461/A/1177:1180,
1/A/1194:1197
No text annotation
Not in a motif group
homologous
IL_5J7L_285
IL_23544.2
IL_5ZEP_0471/A/1205:1209,
1/A/1218:1220
Major groove platform with extra cWW
Not in a motif group
geometric
IL_5D8H_003
IL_05564.2
IL_5ZEP_0481/A/1311:1313,
1/A/1362:1365
Isolated cWS basepair
Not in a motif group
homologous
IL_7A0S_041
IL_52767.2
IL_5ZEP_0491/A/1322:1329,
1/A/1349:1353
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_5ZEP_0501/A/1333:1334,
1/A/1343:1345
Single bulged A
Not in a motif group
geometric
IL_7RQB_101
IL_37497.2
IL_5ZEP_0511/A/1377:1384,
1/A/2235:2241
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_5ZEP_0521/A/1425:1428,
1/A/1821:1822
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7A0S_046
IL_50694.2
IL_5ZEP_0531/A/1434:1438,
1/A/1446:1448
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_5ZEP_0541/A/1466:1470,
1/A/1491:1495
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_5ZEP_0551/A/1472:1476,
1/A/1485:1489
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_5ZEP_0561/A/1529:1531,
1/A/1804:1806
Isolated near basepair
Not in a motif group
geometric
IL_4V9F_077
IL_52767.2
IL_5ZEP_0571/A/1540:1543,
1/A/1627:1632
No text annotation
Not in a motif group
IL_5ZEP_0581/A/1550:1557,
1/A/1614:1620
No text annotation
Not in a motif group
IL_5ZEP_0591/A/1559:1562,
1/A/1609:1612
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_30621.2
IL_5ZEP_0601/A/1638:1642,
1/A/1797:1800
Other IL
Not in a motif group
homologous
IL_4WF9_054
IL_04059.1
IL_5ZEP_0611/A/1653:1656,
1/A/1777:1781
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_5ZEP_0621/A/1658:1661,
1/A/1771:1775
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_5ZEP_0631/A/1689:1692,
1/A/1742:1746
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_5ZEP_0641/A/1694:1699,
1/A/1735:1740
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_81631.1
IL_5ZEP_0651/A/1702:1703,
1/A/1726:1732
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_5ZEP_0661/A/1709:1711,
1/A/1719:1720
Stack outside cWW
Not in a motif group
geometric
IL_6JQ6_004
IL_16396.2
IL_5ZEP_0671/A/1748:1751,
1/A/1762:1766
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_5ZEP_0681/A/1869:1874,
1/A/2228:2230
No text annotation
Not in a motif group
IL_5ZEP_0691/A/1881:1883,
1/A/2219:2221
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_5ZEP_0701/A/1884:1887,
1/A/2217:2218
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_064
IL_50694.2
IL_5ZEP_0711/A/1887:1892,
1/A/2214:2217
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_82842.2
IL_5ZEP_0721/A/1904:1909,
1/A/1914:1920
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_7RQB_068
IL_65969.2
IL_5ZEP_0731/A/1930:1934,
1/A/1960:1963
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5J7L_296
IL_55178.1
IL_5ZEP_0741/A/1937:1942,
1/A/1952:1957
tSH-tHW-tHS-cWW
Not in a motif group
geometric
IL_1LNT_002
IL_76308.4
IL_5ZEP_0751/A/1987:1988,
1/A/2204:2206
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_5ZEP_0761/A/2015:2021,
1/A/2030:2038
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_5ZEP_0771/A/2054:2057,
1/A/2126:2127
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_5ZEP_0781/A/2058:2059,
1/A/2122:2125
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_5ZEP_0791/A/2063:2066,
1/A/2117:2118
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_5ZEP_0801/A/2068:2073,
1/A/2110:2115
No text annotation
Not in a motif group
IL_5ZEP_0811/A/2073:2078,
1/A/2105:2110
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.2
IL_5ZEP_0821/A/2081:2084,
1/A/2098:2102
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_5ZEP_0831/A/2157:2158,
1/A/2188:2191
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_318
IL_59677.2
IL_5ZEP_0841/A/2158:2169,
1/A/2185:2188
No text annotation
Not in a motif group
homologous
IL_7A0S_072
IL_81589.2
IL_5ZEP_0851/A/2274:2276,
1/A/2841:2842
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_5ZEP_0861/A/2278:2280,
1/A/2836:2839
No text annotation
Not in a motif group
IL_5ZEP_0871/A/2293:2294,
1/A/2662:2665
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_5ZEP_0881/A/2304:2306,
1/A/2460:2463
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_5ZEP_0891/A/2308:2310,
1/A/2456:2458
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_5ZEP_0901/A/2317:2319,
1/A/2416:2418
CC cWW
Not in a motif group
geometric
IL_4KNQ_001
IL_95997.1
IL_5ZEP_0911/A/2330:2345,
1/A/2399:2405
No text annotation
Not in a motif group
IL_5ZEP_0921/A/2347:2351,
1/A/2383:2397
No text annotation
Not in a motif group
IL_5ZEP_0931/A/2352:2359,
1/A/2378:2382
Kink-turn
Not in a motif group
homologous
IL_3U4M_004
IL_70923.2
IL_5ZEP_0941/A/2425:2427,
1/A/2444:2445
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_5ZEP_0951/A/2521:2523,
1/A/2541:2545
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_4WF9_086
IL_38958.7
IL_5ZEP_0961/A/2574:2577,
1/A/2588:2591
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_5ZEP_0971/A/2625:2627,
1/A/2638:2639
Single bulged U
Not in a motif group
geometric
IL_3WBM_001
IL_83039.13
IL_5ZEP_0981/A/2677:2678,
1/A/2722:2724
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_5ZEP_0991/A/2678:2679,
1/A/2720:2722
Major groove platform
Not in a motif group
geometric
IL_7RQB_092
IL_27635.1
IL_5ZEP_1001/A/2680:2683,
1/A/2717:2719
Major groove platform with extra pair
Not in a motif group
homologous
IL_7RQB_093
IL_63450.2
IL_5ZEP_1011/A/2683:2685,
1/A/2713:2717
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_7RQB_094
IL_92788.2
IL_5ZEP_1021/A/2685:2687,
1/A/2711:2713
No text annotation
Not in a motif group
geometric
IL_3BNT_006
IL_95997.1
IL_5ZEP_1031/A/2690:2694,
1/A/2704:2708
Triple sheared
Not in a motif group
homologous
IL_4WF9_093
IL_56467.8
IL_5ZEP_1041/A/2731:2732,
1/A/2804:2806
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_5ZEP_1051/A/2734:2736,
1/A/2798:2802
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_097
IL_90933.2
IL_5ZEP_1061/A/2736:2737,
1/A/2795:2798
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_5ZEP_1071/A/2746:2747,
1/A/2764:2767
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_5ZEP_1081/A/2815:2816,
1/A/2825:2827
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_5ZEP_1091/A/2860:2864,
1/A/2998:3006
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_04638.1
IL_5ZEP_1101/A/2876:2882,
1/A/2887:2892
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_5J7L_346
IL_16458.1
IL_5ZEP_1111/A/2904:2908,
1/A/2949:2951
C-loop
Not in a motif group
homologous
IL_7RQB_104
IL_63596.6
IL_5ZEP_1121/A/2911:2915,
1/A/2942:2946
No text annotation
Not in a motif group
homologous
IL_4WF9_102
IL_08296.3
IL_5ZEP_1131/A/2919:2920,
1/A/2935:2938
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_5ZEP_1141/A/2961:2966,
1/A/2986:2991
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_5ZEP_1151/A/3059:3061,
1/A/3098:3101
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5ML7_010
IL_82068.2
IL_5ZEP_1161/A/3064:3066,
1/A/3092:3095
Decoding loop related
Not in a motif group
homologous
IL_7A0S_100
IL_02284.5
IL_5ZEP_1171/A/3068:3073,
1/A/3086:3090
No text annotation
Not in a motif group
homologous
IL_4WF9_108
IL_83162.5
IL_5ZEP_1191/B/6:9,
1/B/108:111
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6CZR_168
IL_67743.1
IL_5ZEP_1201/B/29:31,
1/B/51:55
No text annotation
Not in a motif group
IL_5ZEP_1211/B/31:34,
1/B/48:51
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4K27_001
IL_30621.2
IL_5ZEP_1221/a/34:36,
1/a/532:533
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.2
IL_5ZEP_1231/a/48:49,
1/a/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_5ZEP_1241/a/51:56,
1/a/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_5ZEP_1251/a/58:60,
1/a/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_5ZEP_1261/a/67:70,
1/a/99:100
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_5ZEP_1271/a/71:73,
1/a/95:98
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_5ZEP_1281/a/74:77,
1/a/93:94
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_5ZEP_1291/a/77:78,
1/a/91:93
Major groove platform
Not in a motif group
geometric
IL_4V9F_082
IL_27635.1
IL_5ZEP_1301/a/125:128,
1/a/231:232
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_007
IL_16396.2
IL_5ZEP_1311/a/129:133,
1/a/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_5ZEP_1321/a/144:150,
1/a/165:172
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_5ZEP_1331/a/187:188,
1/a/199:201
No text annotation
Not in a motif group
IL_5ZEP_1341/a/242:247,
1/a/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_5ZEP_1351/a/249:252,
1/a/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_5ZEP_1361/a/292:293,
1/a/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_5ZEP_1371/a/367:369,
1/a/392:393
Single bulged U
Not in a motif group
geometric
IL_4LFB_014
IL_83039.13
IL_5ZEP_1381/a/371:375,
1/a/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_5ZEP_1391/a/375:376,
1/a/387:389
Single bulged G
Not in a motif group
homologous
IL_4LFB_016
IL_00225.2
IL_5ZEP_1401/a/409:416,
1/a/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_5ZEP_1411/a/440:442,
1/a/472:477
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_5ZEP_1421/a/446:450,
1/a/463:468
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_4LFB_018
IL_88269.3
IL_5ZEP_1431/a/450:453,
1/a/460:463
No text annotation
Not in a motif group
IL_5ZEP_1441/a/484:491,
1/a/520:521
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_5ZEP_1451/a/495:501,
1/a/508:516
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_5ZEP_1461/a/549:555,
1/a/862:863
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_5ZEP_1471/a/560:564,
1/a/737:741
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_5ZEP_1481/a/574:576,
1/a/624:625
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_5ZEP_1491/a/577:578,
1/a/620:623
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_5ZEP_1501/a/585:591,
1/a/609:613
No text annotation
Not in a motif group
IL_5ZEP_1511/a/634:635,
1/a/731:734
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_5ZEP_1521/a/637:638,
1/a/727:729
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_5ZEP_1531/a/642:646,
1/a/720:723
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_5ZEP_1541/a/653:658,
1/a/692:697
No text annotation
Not in a motif group
geometric
IL_4LFB_030
IL_04668.1
IL_5ZEP_1551/a/664:668,
1/a/679:686
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_5ZEP_1561/a/754:758,
1/a/784:785
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_5ZEP_1571/a/759:763,
1/a/779:783
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_5ZEP_1581/a/869:876,
1/a/887:892
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_5ZEP_1591/a/904:905,
1/a/1376:1378
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_5ZEP_1601/a/907:909,
1/a/1373:1374
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_5ZEP_1611/a/915:917,
1/a/1363:1367
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_5ZEP_1621/a/935:936,
1/a/1207:1209
Minor groove platform
Not in a motif group
homologous
IL_4LFB_038
IL_42622.2
IL_5ZEP_1631/a/975:979,
1/a/1024:1025
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_5ZEP_1641/a/984:985,
1/a/1017:1019
Single stack bend
Not in a motif group
geometric
IL_4WF9_007
IL_76488.2
IL_5ZEP_1651/a/1028:1030,
1/a/1189:1190
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_5ZEP_1661/a/1032:1036,
1/a/1185:1187
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_5ZEP_1671/a/1037:1038,
1/a/1180:1184
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_5ZEP_1681/a/1040:1041,
1/a/1176:1178
Single bulged A
Not in a motif group
homologous
IL_5J7L_049
IL_37497.2
IL_5ZEP_1691/a/1041:1043,
1/a/1174:1176
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_5ZEP_1701/a/1104:1108,
1/a/1125:1130
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_5ZEP_1711/a/1109:1112,
1/a/1123:1124
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_5ZEP_1721/a/1139:1142,
1/a/1156:1162
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_5ZEP_1731/a/1228:1234,
1/a/1265:1272
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_5ZEP_1741/a/1236:1239,
1/a/1258:1263
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_5ZEP_1751/a/1240:1244,
1/a/1253:1257
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_5ZEP_1761/a/1285:1290,
1/a/1311:1316
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_5ZEP_1771/a/1382:1384,
1/a/1485:1488
No text annotation
Not in a motif group
homologous
IL_4LFB_056
NA
IL_5ZEP_1781/a/1384:1387,
1/a/1481:1485
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_5ZEP_1791/a/1388:1390,
1/a/1478:1480
No text annotation
Not in a motif group
geometric
IL_4WF9_020
IL_95997.1
IL_5ZEP_1801/a/1390:1392,
1/a/1475:1478
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_3TD0_005
IL_82068.2
IL_5ZEP_1811/a/1395:1397,
1/a/1470:1472
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_5ZEP_1821/a/1399:1402,
1/a/1465:1468
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_5ZEP_1831/a/1407:1410,
1/a/1457:1460
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_100
IL_30621.2
IL_5ZEP_1841/a/1413:1418,
1/a/1450:1454
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_5ZEP_1851/a/1418:1420,
1/a/1448:1450
No text annotation
Not in a motif group
geometric
IL_4LFB_063
IL_95997.1
IL_5ZEP_1861/a/1423:1426,
1/a/1443:1445
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_082
IL_38958.7
IL_5ZEP_1871/a/1428:1431,
1/a/1439:1441
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5
IL_5ZEP_1881/a/1432:1433,
1/a/1436:1438
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_5ZEP_118No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5ZEP_0011/A/27:28,
1/A/562:569,
1/A/596:597
No text annotation
Not in a motif group
J3_5ZEP_0021/A/53:54,
1/A/67:73,
1/A/107:111
No text annotation
Not in a motif group
homologous
J3_7RQB_002
NA
J3_5ZEP_0031/A/317:319,
1/A/457:463,
1/A/487:492
No text annotation
Not in a motif group
J3_5ZEP_0041/A/329:331,
1/A/350:352,
1/A/443:446
No text annotation
Not in a motif group
J3_5ZEP_0051/A/798:804,
1/A/888:890,
1/A/906:909
No text annotation
Not in a motif group
homologous
J3_5J7L_038
NA