Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5MGP_0011/A/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_18177.1
HL_5MGP_0021/A/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_5MGP_0031/A/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_75407.1
HL_5MGP_0041/A/137:142No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_5MGP_0051/A/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_5MGP_0061/A/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_5MGP_0071/A/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_27930.1
HL_5MGP_0081/A/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_5MGP_0091/A/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_5MGP_0101/A/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.8
HL_5MGP_0111/A/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_5MGP_0121/A/410:417No text annotation
Not in a motif group
homologous
HL_5J7L_146
HL_96598.1
HL_5MGP_0131/A/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.1
HL_5MGP_0141/A/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.1
HL_5MGP_0151/A/545:548No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_5MGP_0161/A/566:575T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_150
HL_89380.2
HL_5MGP_0171/A/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_5MGP_0181/A/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.1
HL_5MGP_0191/A/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_77805.2
HL_5MGP_0201/A/712:719No text annotation
Not in a motif group
homologous
HL_5J7L_154
HL_84085.2
HL_5MGP_0211/A/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_5MGP_0221/A/779:785No text annotation
Not in a motif group
homologous
HL_7A0S_023
HL_27930.1
HL_5MGP_0231/A/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_64365.1
HL_5MGP_0251/A/954:963No text annotation
Not in a motif group
geometric
HL_3RG5_006
HL_49288.1
HL_5MGP_0261/A/978:985No text annotation
Not in a motif group
homologous
HL_7A0S_027
HL_64430.2
HL_5MGP_0271/A/1092:1099No text annotation
Not in a motif group
homologous
HL_6PRV_002
HL_84085.2
HL_5MGP_0281/A/1169:1180No text annotation
Not in a motif group
HL_5MGP_0291/A/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_5MGP_0301/A/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_5MGP_0311/A/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_5MGP_0321/A/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_5MGP_0331/A/1389:1398No text annotation
Not in a motif group
homologous
HL_5J7L_168
HL_69023.2
HL_5MGP_0341/A/1451:1459No text annotation
Not in a motif group
geometric
HL_1ZBH_001
HL_65572.2
HL_5MGP_0351/A/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_5MGP_0361/A/1531:1540No text annotation
Not in a motif group
HL_5MGP_0371/A/1565:1568No text annotation
Not in a motif group
homologous
HL_7A0S_039
HL_38927.2
HL_5MGP_0381/A/1612:1619No text annotation
Not in a motif group
homologous
HL_7RQB_040
HL_64430.2
HL_5MGP_0391/A/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.1
HL_5MGP_0401/A/1691:1696UNCG
Not in a motif group
geometric
HL_4PMI_004
HL_03562.2
HL_5MGP_0411/A/1728:1731No text annotation
Not in a motif group
geometric
HL_5J7L_176
HL_98426.1
HL_5MGP_0421/A/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.2
HL_5MGP_0431/A/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_5MGP_0441/A/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.1
HL_5MGP_0451/A/1868:1873Other HL
Not in a motif group
homologous
HL_5J7L_180
HL_42097.1
HL_5MGP_0461/A/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_5MGP_0471/A/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_5MGP_0481/A/1992:1996No text annotation
Not in a motif group
HL_5MGP_0491/A/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_5MGP_0511/A/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_5MGP_0521/A/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_5MGP_0531/A/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_5MGP_0541/A/2303:2313No text annotation
Not in a motif group
homologous
HL_7RQB_055
HL_11805.3
HL_5MGP_0551/A/2324:2331No text annotation
Not in a motif group
homologous
HL_5J7L_189
HL_12078.2
HL_5MGP_0561/A/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_5MGP_0571/A/2374:2379GNRA
Not in a motif group
homologous
HL_5J7L_191
HL_42097.1
HL_5MGP_0581/A/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_30784.2
HL_5MGP_0591/A/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_5MGP_0601/A/2528:2535No text annotation
Not in a motif group
homologous
HL_5J7L_194
HL_88526.2
HL_5MGP_0611/A/2551:2557No text annotation
Not in a motif group
homologous
HL_5J7L_195
NA
HL_5MGP_0621/A/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_5MGP_0631/A/2658:2663No text annotation
Not in a motif group
homologous
HL_7RQB_064
HL_42097.1
HL_5MGP_0641/A/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_5J7L_198
HL_46680.1
HL_5MGP_0651/A/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_5MGP_0661/A/2795:2801Other HL
Not in a motif group
homologous
HL_5J7L_200
HL_34168.2
HL_5MGP_0671/A/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_5MGP_0681/A/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.1
HL_5MGP_0691/B/38:44No text annotation
Not in a motif group
geometric
HL_2Y9H_003
HL_16173.1
HL_5MGP_0701/B/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2
HL_5MGP_0711/a/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_5MGP_0721/a/78:91No text annotation
Not in a motif group
HL_5MGP_0731/a/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.1
HL_5MGP_0741/a/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.1
HL_5MGP_0751/a/203:214No text annotation
Not in a motif group
HL_5MGP_0761/a/259:267No text annotation
Not in a motif group
homologous
HL_5J7L_006
HL_69023.2
HL_5MGP_0771/a/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_42097.1
HL_5MGP_0781/a/320:333No text annotation
Not in a motif group
homologous
HL_5J7L_008
HL_81205.2
HL_5MGP_0791/a/342:347UNCG
Not in a motif group
homologous
HL_4LFB_009
HL_03562.2
HL_5MGP_0801/a/379:384GNRA
Not in a motif group
homologous
HL_5J7L_010
HL_42097.1
HL_5MGP_0811/a/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_5MGP_0821/a/462:470No text annotation
Not in a motif group
homologous
HL_5J7L_012
HL_84085.2
HL_5MGP_0831/a/522:527No text annotation
Not in a motif group
geometric
HL_4WF9_003
HL_75407.1
HL_5MGP_0841/a/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_5MGP_0851/a/689:698No text annotation
Not in a motif group
homologous
HL_5J7L_015
HL_12326.1
HL_5MGP_0861/a/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_5MGP_0871/a/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_5MGP_0881/a/840:846No text annotation
Not in a motif group
HL_5MGP_0891/a/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_42097.1
HL_5MGP_0901/a/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.1
HL_5MGP_0911/a/963:972No text annotation
Not in a motif group
homologous
HL_5J7L_021
NA
HL_5MGP_0921/a/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_5MGP_0931/a/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_5MGP_0941/a/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_5MGP_0951/a/1133:1141No text annotation
Not in a motif group
geometric
HL_5TBW_021
HL_33817.1
HL_5MGP_0961/a/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_5MGP_0971/a/1265:1270GNRA
Not in a motif group
homologous
HL_5J7L_027
HL_42097.1
HL_5MGP_0981/a/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_5MGP_0991/a/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_5MGP_1001/a/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_5MGP_1011/a/1515:1520No text annotation
Not in a motif group
homologous
HL_6CZR_103
NA
HL_5MGP_1021/x/13:22No text annotation
Not in a motif group
homologous
HL_1QF6_001
NA
HL_5MGP_1031/x/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4TUE_034
HL_53597.2
HL_5MGP_1041/x/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5AXM_003
HL_22280.1

Problematic loops

#loop idProblemSequence
HL_5MGP_024No text annotation
HL_5MGP_050No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5MGP_0011/A/24:30,
1/A/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_5J7L_245
IL_66414.6
IL_5MGP_0021/A/36:37,
1/A/442:444
Single bulged A
Not in a motif group
homologous
IL_7RQB_002
IL_37497.2
IL_5MGP_0031/A/43:44,
1/A/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.2
IL_5MGP_0041/A/81:85,
1/A/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_93699.1
IL_5MGP_0051/A/183:184,
1/A/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_5MGP_0061/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_5MGP_0071/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_5MGP_0081/A/269:271,
1/A/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_5MGP_0091/A/274:281,
1/A/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_5MGP_0101/A/284:287,
1/A/353:356
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_3WBM_002
IL_30621.2
IL_5MGP_0111/A/293:295,
1/A/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_5MGP_0121/A/481:484,
1/A/496:509
No text annotation
Not in a motif group
geometric
IL_5J7L_255
IL_60992.6
IL_5MGP_0131/A/536:539,
1/A/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.9
IL_5MGP_0141/A/564:566,
1/A/575:577
No text annotation
Not in a motif group
geometric
IL_5J7L_257
IL_95997.1
IL_5MGP_0151/A/606:610,
1/A/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_5MGP_0161/A/672:674,
1/A/806:808
No text annotation
Not in a motif group
geometric
IL_5J7L_259
IL_95997.1
IL_5MGP_0171/A/674:678,
1/A/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_5MGP_0181/A/697:698,
1/A/763:765
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_37497.2
IL_5MGP_0191/A/702:703,
1/A/728:730
Single bulged G
Not in a motif group
geometric
IL_5J7L_262
IL_00225.2
IL_5MGP_0201/A/703:707,
1/A/724:728
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_5MGP_0211/A/738:740,
1/A/757:758
Major groove platform
Not in a motif group
homologous
IL_4WF9_026
IL_27635.1
IL_5MGP_0221/A/775:777,
1/A/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_7A0S_021
IL_90991.6
IL_5MGP_0231/A/844:847,
1/A/933:934
Other IL
Not in a motif group
geometric
IL_5J7L_267
IL_92001.1
IL_5MGP_0241/A/847:848,
1/A/930:933
Stack outside cWW
Not in a motif group
homologous
IL_5J7L_268
IL_37629.1
IL_5MGP_0251/A/850:851,
1/A/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_76488.2
IL_5MGP_0261/A/856:862,
1/A/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_5J7L_270
IL_93830.3
IL_5MGP_0271/A/862:863,
1/A/913:915
Single bulged G
Not in a motif group
geometric
IL_5J7L_271
IL_00225.2
IL_5MGP_0281/A/864:868,
1/A/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_5MGP_0291/A/870:872,
1/A/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_5MGP_0301/A/875:879,
1/A/898:902
Triple sheared
Not in a motif group
geometric
IL_5J7L_338
IL_56467.8
IL_5MGP_0311/A/879:881,
1/A/895:898
No text annotation
Not in a motif group
IL_5MGP_0321/A/994:996,
1/A/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_5MGP_0331/A/998:1002,
1/A/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_5J7L_277
IL_89002.2
IL_5MGP_0341/A/1004:1011,
1/A/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.7
IL_5MGP_0351/A/1011:1013,
1/A/1149:1150
Single bulged U
Not in a motif group
homologous
IL_5J7L_279
IL_83039.13
IL_5MGP_0361/A/1018:1024,
1/A/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_5MGP_0371/A/1024:1030,
1/A/1124:1140
No text annotation
Not in a motif group
geometric
IL_5J7L_281
IL_50715.1
IL_5MGP_0381/A/1031:1034,
1/A/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_4WF9_041
IL_82068.2
IL_5MGP_0391/A/1038:1041,
1/A/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.2
IL_5MGP_0401/A/1043:1051,
1/A/1108:1112
Kink-turn
Not in a motif group
homologous
IL_5J7L_284
IL_90538.4
IL_5MGP_0411/A/1055:1087,
1/A/1102:1104
No text annotation
Not in a motif group
IL_5MGP_0421/A/1087:1090,
1/A/1101:1102
Major groove platform
Not in a motif group
geometric
IL_4V9F_044
IL_27635.1
IL_5MGP_0431/A/1196:1198,
1/A/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_52767.2
IL_5MGP_0441/A/1202:1206,
1/A/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_5MGP_0451/A/1208:1215,
1/A/1234:1238
Kink-turn
Not in a motif group
homologous
IL_5J7L_288
IL_70923.2
IL_5MGP_0461/A/1262:1269,
1/A/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.7
IL_5MGP_0471/A/1310:1313,
1/A/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_5MGP_0481/A/1319:1323,
1/A/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_63596.6
IL_5MGP_0491/A/1351:1355,
1/A/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_5MGP_0501/A/1357:1361,
1/A/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_5MGP_0511/A/1415:1416,
1/A/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_5MGP_0521/A/1417:1421,
1/A/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_5MGP_0531/A/1431:1435,
1/A/1557:1562
No text annotation
Not in a motif group
IL_5MGP_0541/A/1437:1440,
1/A/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_5J7L_297
IL_04059.1
IL_5MGP_0551/A/1450:1451,
1/A/1459:1461
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.13
IL_5MGP_0561/A/1468:1471,
1/A/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_5MGP_0571/A/1474:1478,
1/A/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_5MGP_0581/A/1481:1482,
1/A/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_5MGP_0591/A/1489:1491,
1/A/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_5MGP_0601/A/1526:1529,
1/A/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_5MGP_0611/A/1651:1656,
1/A/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_5MGP_0621/A/1686:1691,
1/A/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_5MGP_0631/A/1712:1718,
1/A/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_5MGP_0641/A/1720:1724,
1/A/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_5MGP_0651/A/1727:1728,
1/A/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_5MGP_0661/A/1770:1771,
1/A/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.2
IL_5MGP_0671/A/1798:1804,
1/A/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_5MGP_0681/A/1837:1840,
1/A/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_5MGP_0691/A/1841:1842,
1/A/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_5MGP_0701/A/1846:1849,
1/A/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.6
IL_5MGP_0711/A/1864:1867,
1/A/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_5MGP_0721/A/1933:1934,
1/A/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_076
IL_59677.2
IL_5MGP_0731/A/1934:1945,
1/A/1961:1964
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_5MGP_0741/A/2050:2052,
1/A/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.1
IL_5MGP_0751/A/2054:2056,
1/A/2612:2615
No text annotation
Not in a motif group
IL_5MGP_0761/A/2067:2070,
1/A/2441:2443
No text annotation
Not in a motif group
geometric
IL_5C5W_002
IL_95997.1
IL_5MGP_0771/A/2070:2071,
1/A/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_5MGP_0781/A/2081:2083,
1/A/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_5MGP_0791/A/2085:2087,
1/A/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_5MGP_0821/A/2202:2204,
1/A/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.13
IL_5MGP_0831/A/2350:2353,
1/A/2364:2367
Double sheared
Not in a motif group
homologous
IL_5J7L_333
IL_09705.9
IL_5MGP_0841/A/2401:2403,
1/A/2414:2415
No text annotation
Not in a motif group
IL_5MGP_0851/A/2453:2454,
1/A/2498:2500
Single stack bend
Not in a motif group
homologous
IL_4WF9_089
IL_76488.2
IL_5MGP_0861/A/2454:2455,
1/A/2496:2498
Major groove platform
Not in a motif group
geometric
IL_4V9F_082
IL_27635.1
IL_5MGP_0871/A/2456:2459,
1/A/2493:2495
Major groove platform with extra pair
Not in a motif group
homologous
IL_7RQB_093
IL_63450.2
IL_5MGP_0881/A/2459:2461,
1/A/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
geometric
IL_5J7L_337
IL_92788.2
IL_5MGP_0891/A/2466:2470,
1/A/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_5MGP_0901/A/2507:2509,
1/A/2579:2582
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_5MGP_0911/A/2510:2512,
1/A/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5J7L_340
IL_90933.2
IL_5MGP_0921/A/2512:2513,
1/A/2571:2574
No text annotation
Not in a motif group
homologous
IL_5J7L_341
IL_71530.2
IL_5MGP_0931/A/2522:2523,
1/A/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_5J7L_342
IL_95601.3
IL_5MGP_0941/A/2591:2592,
1/A/2601:2603
Single bulged A
Not in a motif group
homologous
IL_5J7L_344
IL_37497.2
IL_5MGP_0951/A/2636:2640,
1/A/2774:2782
No text annotation
Not in a motif group
homologous
IL_5J7L_345
IL_04638.1
IL_5MGP_0961/A/2652:2658,
1/A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
geometric
IL_7RQB_103
IL_16458.1
IL_5MGP_0971/A/2680:2684,
1/A/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_5MGP_0981/A/2687:2691,
1/A/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_5MGP_0991/A/2695:2696,
1/A/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_5J7L_349
IL_71530.2
IL_5MGP_1001/A/2737:2742,
1/A/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.5
IL_5MGP_1011/A/2806:2811,
1/A/2889:2892
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_49460.2
IL_5MGP_1021/A/2838:2839,
1/A/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_16396.2
IL_5MGP_1031/A/2843:2846,
1/A/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_5MGP_1041/A/2847:2852,
1/A/2865:2869
No text annotation
Not in a motif group
homologous
IL_5J7L_354
IL_83162.5
IL_5MGP_1051/B/17:18,
1/B/65:67
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_355
IL_37497.2
IL_5MGP_1061/B/23:28,
1/B/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_5MGP_1071/B/30:31,
1/B/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_357
IL_09061.6
IL_5MGP_1081/B/34:38,
1/B/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_5J7L_358
IL_58103.6
IL_5MGP_1091/B/71:79,
1/B/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_5J7L_359
IL_56455.3
IL_5MGP_1101/a/30:32,
1/a/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.2
IL_5MGP_1111/a/44:45,
1/a/396:398
Single bulged A
Not in a motif group
homologous
IL_5J7L_002
IL_37497.2
IL_5MGP_1121/a/47:52,
1/a/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_11178.1
IL_5MGP_1131/a/54:56,
1/a/356:357
Minor groove platform
Not in a motif group
homologous
IL_4LFB_004
IL_93353.1
IL_5MGP_1141/a/63:66,
1/a/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_5MGP_1151/a/67:69,
1/a/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_5MGP_1161/a/70:73,
1/a/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_5MGP_1171/a/75:77,
1/a/92:95
Single bulged G, near cWW
Not in a motif group
homologous
IL_5J7L_008
IL_82068.2
IL_5MGP_1181/a/128:131,
1/a/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_5MGP_1191/a/132:136,
1/a/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_5MGP_1201/a/144:146,
1/a/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_5MGP_1211/a/147:153,
1/a/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_5MGP_1221/a/242:247,
1/a/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_5MGP_1231/a/249:252,
1/a/274:275
No text annotation
Not in a motif group
homologous
IL_4LFB_012
IL_48100.2
IL_5MGP_1241/a/292:293,
1/a/304:308
C-loop
Not in a motif group
homologous
IL_5J7L_016
IL_37712.2
IL_5MGP_1251/a/367:369,
1/a/392:393
Single bulged U
Not in a motif group
geometric
IL_5TBW_093
IL_83039.13
IL_5MGP_1261/a/371:375,
1/a/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_5MGP_1271/a/375:376,
1/a/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_5MGP_1281/a/409:416,
1/a/427:433
No text annotation
Not in a motif group
homologous
IL_5J7L_020
IL_28026.1
IL_5MGP_1291/a/440:442,
1/a/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_5MGP_1301/a/446:450,
1/a/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_5MGP_1311/a/450:456,
1/a/476:483
No text annotation
Not in a motif group
IL_5MGP_1321/a/504:511,
1/a/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_5MGP_1331/a/515:521,
1/a/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_5MGP_1341/a/569:575,
1/a/880:881
No text annotation
Not in a motif group
homologous
IL_5J7L_026
IL_69996.1
IL_5MGP_1351/a/580:584,
1/a/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_5MGP_1361/a/594:596,
1/a/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.1
IL_5MGP_1371/a/597:598,
1/a/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_029
IL_09061.6
IL_5MGP_1381/a/605:612,
1/a/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_5MGP_1391/a/654:655,
1/a/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4LFB_027
IL_50694.2
IL_5MGP_1401/a/659:660,
1/a/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_5MGP_1411/a/662:666,
1/a/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_033
IL_71110.1
IL_5MGP_1421/a/684:688,
1/a/699:706
Kink-turn
Not in a motif group
homologous
IL_5J7L_035
IL_45067.2
IL_5MGP_1431/a/774:778,
1/a/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_5MGP_1441/a/779:783,
1/a/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_5MGP_1451/a/887:894,
1/a/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_5J7L_038
IL_24606.2
IL_5MGP_1461/a/922:923,
1/a/1393:1395
Single bulged A
Not in a motif group
homologous
IL_4LFB_035
IL_37497.2
IL_5MGP_1471/a/925:927,
1/a/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_5MGP_1481/a/933:935,
1/a/1380:1384
Minor groove platform
Not in a motif group
homologous
IL_5J7L_041
IL_47078.1
IL_5MGP_1491/a/953:954,
1/a/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_5MGP_1501/a/993:997,
1/a/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_5J7L_043
IL_47078.1
IL_5MGP_1511/a/998:999,
1/a/1041:1043
Single stack bend
Not in a motif group
homologous
IL_5J7L_044
IL_76488.2
IL_5MGP_1521/a/1002:1006,
1/a/1023:1038
No text annotation
Not in a motif group
IL_5MGP_1531/a/1048:1050,
1/a/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.13
IL_5MGP_1541/a/1051:1056,
1/a/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_30621.2
IL_5MGP_1551/a/1057:1058,
1/a/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_5MGP_1561/a/1060:1061,
1/a/1195:1197
Single bulged U
Not in a motif group
homologous
IL_4LFB_046
IL_83039.13
IL_5MGP_1571/a/1061:1063,
1/a/1193:1195
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_5MGP_1581/a/1124:1128,
1/a/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_5MGP_1591/a/1129:1132,
1/a/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_5MGP_1601/a/1158:1161,
1/a/1175:1181
No text annotation
Not in a motif group
geometric
IL_5J7L_053
IL_42032.1
IL_5MGP_1611/a/1247:1253,
1/a/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_5MGP_1621/a/1255:1258,
1/a/1277:1282
No text annotation
Not in a motif group
homologous
IL_5J7L_055
IL_75461.4
IL_5MGP_1631/a/1259:1263,
1/a/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_5MGP_1641/a/1303:1308,
1/a/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_5MGP_1651/a/1399:1401,
1/a/1501:1504
No text annotation
Not in a motif group
geometric
IL_5J7L_058
IL_36143.3
IL_5MGP_1661/a/1401:1404,
1/a/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_5MGP_1671/a/1405:1407,
1/a/1494:1496
No text annotation
Not in a motif group
geometric
IL_4V88_465
IL_95997.1
IL_5MGP_1681/a/1407:1409,
1/a/1491:1494
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_82842.2
IL_5MGP_1691/a/1412:1414,
1/a/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_5MGP_1701/a/1416:1419,
1/a/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_5MGP_1711/a/1430:1435,
1/a/1466:1470
Triple sheared related
Not in a motif group
homologous
IL_5J7L_063
IL_64879.2
IL_5MGP_1721/a/1440:1442,
1/a/1460:1461
Minor groove platform
Not in a motif group
homologous
IL_5J7L_064
IL_42622.2
IL_5MGP_1731/a/1445:1448,
1/a/1455:1457
No text annotation
Not in a motif group
homologous
IL_5J7L_065
IL_02284.5

Problematic loops

#loop idProblemSequence
IL_5MGP_080No text annotation
IL_5MGP_081No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5MGP_0011/A/30:31,
1/A/474:481,
1/A/509:510
No text annotation
Not in a motif group
homologous
J3_5J7L_036
NA
J3_5MGP_0021/A/56:57,
1/A/70:76,
1/A/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_5MGP_0031/A/683:689,
1/A/773:775,
1/A/791:794
No text annotation
Not in a motif group
homologous
J3_7RQB_004
NA
J3_5MGP_0041/A/698:700,
1/A/732:736,
1/A/760:763
No text annotation
Not in a motif group
homologous
J3_7RQB_005
NA
J3_5MGP_0051/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_5MGP_0061/A/1306:1309,
1/A/1605:1611,
1/A/1620:1622
No text annotation
Not in a motif group
homologous
J3_7A0S_007
NA
J3_5MGP_0071/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403
No