3J78 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J78_001 | 1/1S/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_3J78_002 | 1/1S/70:81 | No text annotation Not in a motif group | geometric HL_7A0S_011 HL_75407.1 | |
| HL_3J78_003 | 1/1S/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_3J78_004 | 1/1S/190:195 | No text annotation Not in a motif group | ||
| HL_3J78_005 | 1/1S/230:235 | No text annotation Not in a motif group | ||
| HL_3J78_006 | 1/1S/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_3J78_007 | 1/1S/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_3J78_008 | 1/1S/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_3J78_009 | 1/1S/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_3J78_010 | 1/1S/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_3J78_011 | 1/1S/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_3J78_012 | 1/1S/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_3J78_013 | 1/1S/485:502 | No text annotation Not in a motif group | ||
| HL_3J78_014 | 1/1S/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_3J78_015 | 1/1S/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_3J78_017 | 1/1S/703:735 | No text annotation Not in a motif group | ||
| HL_3J78_018 | 1/1S/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_3J78_019 | 1/1S/777:783 | No text annotation Not in a motif group | ||
| HL_3J78_020 | 1/1S/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_3J78_021 | 1/1S/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_3J78_022 | 1/1S/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_3J78_023 | 1/1S/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_3J78_024 | 1/1S/1055:1064 | No text annotation Not in a motif group | ||
| HL_3J78_025 | 1/1S/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_3J78_026 | 1/1S/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_3J78_027 | 1/1S/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_3J78_028 | 1/1S/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_3J78_029 | 1/1S/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_3J78_030 | 1/1S/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_3J78_031 | 1/1S/1359:1364 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_3J78_032 | 1/1S/1395:1403 | No text annotation Not in a motif group | geometric HL_4WF9_041 HL_49288.1 | |
| HL_3J78_033 | 1/1S/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_3J78_034 | 1/1S/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_3J78_035 | 1/1S/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_3J78_036 | 1/1S/1687:1714 | No text annotation Not in a motif group | ||
| HL_3J78_037 | 1/1S/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_3J78_038 | 1/2S/38:45 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_3J78_039 | 1/2S/69:74 | No text annotation Not in a motif group | homologous HL_5TBW_002 HL_02862.2 | |
| HL_3J78_040 | 1/2S/90:96 | No text annotation Not in a motif group | homologous HL_5TBW_003 HL_67216.7 | |
| HL_3J78_041 | 1/2S/132:136 | No text annotation Not in a motif group | homologous HL_8C3A_004 HL_98426.1 | |
| HL_3J78_042 | 1/2S/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_3J78_043 | 1/2S/208:212 | No text annotation Not in a motif group | homologous HL_8C3A_006 HL_98984.2 | |
| HL_3J78_044 | 1/2S/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_3J78_045 | 1/2S/278:287 | No text annotation Not in a motif group | homologous HL_8C3A_008 HL_71554.2 | |
| HL_3J78_046 | 1/2S/303:312 | No text annotation Not in a motif group | homologous HL_5TBW_009 HL_12078.2 | |
| HL_3J78_047 | 1/2S/357:362 | Other HL Not in a motif group | homologous HL_5TBW_010 HL_42097.1 | |
| HL_3J78_048 | 1/2S/382:387 | GNRA Not in a motif group | homologous HL_5TBW_011 HL_42097.1 | |
| HL_3J78_049 | 1/2S/543:548 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_3J78_050 | 1/2S/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_3J78_051 | 1/2S/640:649 | No text annotation Not in a motif group | homologous HL_8C3A_014 HL_89380.2 | |
| HL_3J78_052 | 1/2S/686:694 | No text annotation Not in a motif group | homologous HL_8C3A_015 HL_03345.1 | |
| HL_3J78_053 | 1/2S/707:712 | No text annotation Not in a motif group | homologous HL_8C3A_016 HL_42097.1 | |
| HL_3J78_054 | 1/2S/732:737 | GNRA Not in a motif group | homologous HL_5TBW_017 HL_42097.1 | |
| HL_3J78_055 | 1/2S/763:768 | No text annotation Not in a motif group | homologous HL_5TBW_018 HL_34168.2 | |
| HL_3J78_056 | 1/2S/844:849 | No text annotation Not in a motif group | homologous HL_8C3A_019 HL_42097.1 | |
| HL_3J78_057 | 1/2S/876:885 | No text annotation Not in a motif group | homologous HL_8C3A_020 HL_39334.6 | |
| HL_3J78_058 | 1/2S/910:918 | No text annotation Not in a motif group | homologous HL_8C3A_021 HL_33817.1 | |
| HL_3J78_059 | 1/2S/958:963 | No text annotation Not in a motif group | homologous HL_8C3A_022 HL_96598.1 | |
| HL_3J78_060 | 1/2S/1023:1029 | GNRA Not in a motif group | homologous HL_5TBW_023 HL_42097.1 | |
| HL_3J78_061 | 1/2S/1076:1083 | No text annotation Not in a motif group | geometric HL_4LFB_025 HL_71554.2 | |
| HL_3J78_062 | 1/2S/1126:1132 | No text annotation Not in a motif group | homologous HL_8C3A_025 HL_42097.1 | |
| HL_3J78_063 | 1/2S/1148:1155 | No text annotation Not in a motif group | homologous HL_8C3A_026 HL_64430.2 | |
| HL_3J78_064 | 1/2S/1239:1249 | No text annotation Not in a motif group | homologous HL_5TBW_027 HL_07145.1 | |
| HL_3J78_065 | 1/2S/1267:1274 | No text annotation Not in a motif group | homologous HL_8C3A_028 HL_84085.2 | |
| HL_3J78_066 | 1/2S/1347:1357 | No text annotation Not in a motif group | homologous HL_5TBW_029 HL_89098.1 | |
| HL_3J78_067 | 1/2S/1403:1408 | No text annotation Not in a motif group | homologous HL_8C3A_030 HL_42097.1 | |
| HL_3J78_068 | 1/2S/1462:1470 | No text annotation Not in a motif group | homologous HL_8C3A_031 HL_89380.2 | |
| HL_3J78_069 | 1/2S/1506:1512 | No text annotation Not in a motif group | homologous HL_8C3A_032 HL_46680.1 | |
| HL_3J78_070 | 1/2S/1544:1549 | No text annotation Not in a motif group | homologous HL_8C3A_033 HL_76539.2 | |
| HL_3J78_071 | 1/2S/1566:1572 | No text annotation Not in a motif group | ||
| HL_3J78_072 | 1/2S/1599:1608 | No text annotation Not in a motif group | homologous HL_8C3A_035 HL_69023.2 | |
| HL_3J78_073 | 1/2S/1634:1639 | GNRA Not in a motif group | homologous HL_5TBW_036 HL_42097.1 | |
| HL_3J78_074 | 1/2S/1680:1688 | No text annotation Not in a motif group | homologous HL_5TBW_037 HL_60812.1 | |
| HL_3J78_075 | 1/2S/1719:1725 | No text annotation Not in a motif group | homologous HL_5TBW_038 HL_86373.2 | |
| HL_3J78_076 | 1/2S/1759:1766 | No text annotation Not in a motif group | ||
| HL_3J78_077 | 1/2S/1792:1796 | No text annotation Not in a motif group | homologous HL_5TBW_040 HL_38927.2 | |
| HL_3J78_078 | 1/2S/1844:1851 | No text annotation Not in a motif group | homologous HL_5TBW_041 HL_64430.2 | |
| HL_3J78_079 | 1/2S/1862:1868 | GNRA with one bulged base Not in a motif group | homologous HL_5TBW_042 HL_42097.1 | |
| HL_3J78_080 | 1/2S/1923:1928 | No text annotation Not in a motif group | homologous HL_8C3A_043 HL_03562.2 | |
| HL_3J78_082 | 1/2S/2110:2114 | No text annotation Not in a motif group | homologous HL_8C3A_045 HL_20062.1 | |
| HL_3J78_083 | 1/2S/2135:2145 | No text annotation Not in a motif group | homologous HL_5TBW_046 HL_43613.5 | |
| HL_3J78_084 | 1/2S/2164:2170 | No text annotation Not in a motif group | homologous HL_8C3A_047 HL_42097.1 | |
| HL_3J78_085 | 1/2S/2220:2225 | No text annotation Not in a motif group | homologous HL_8C3A_048 HL_42097.1 | |
| HL_3J78_086 | 1/2S/2253:2263 | No text annotation Not in a motif group | homologous HL_8C3A_049 HL_71924.2 | |
| HL_3J78_087 | 1/2S/2292:2300 | No text annotation Not in a motif group | homologous HL_5TBW_050 HL_51824.1 | |
| HL_3J78_088 | 1/2S/2369:2378 | No text annotation Not in a motif group | homologous HL_8C3A_051 HL_90642.6 | |
| HL_3J78_089 | 1/2S/2469:2476 | No text annotation Not in a motif group | ||
| HL_3J78_090 | 1/2S/2535:2544 | No text annotation Not in a motif group | ||
| HL_3J78_091 | 1/2S/2568:2573 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_3J78_092 | 1/2S/2616:2624 | No text annotation Not in a motif group | homologous HL_8C3A_055 HL_53171.2 | |
| HL_3J78_093 | 1/2S/2633:2645 | No text annotation Not in a motif group | homologous HL_5TBW_055 HL_19870.6 | |
| HL_3J78_094 | 1/2S/2673:2681 | No text annotation Not in a motif group | homologous HL_8C3A_057 HL_76406.4 | |
| HL_3J78_095 | 1/2S/2693:2700 | No text annotation Not in a motif group | homologous HL_8C3A_058 HL_12078.2 | |
| HL_3J78_096 | 1/2S/2724:2732 | No text annotation Not in a motif group | homologous HL_8C3A_059 HL_92229.2 | |
| HL_3J78_097 | 1/2S/2744:2749 | No text annotation Not in a motif group | homologous HL_8C3A_060 HL_42097.1 | |
| HL_3J78_098 | 1/2S/2776:2784 | No text annotation Not in a motif group | homologous HL_8C3A_061 HL_96598.1 | |
| HL_3J78_099 | 1/2S/2840:2848 | No text annotation Not in a motif group | homologous HL_5TBW_061 HL_06192.2 | |
| HL_3J78_100 | 1/2S/2897:2904 | No text annotation Not in a motif group | homologous HL_5TBW_062 HL_88526.2 | |
| HL_3J78_101 | 1/2S/2920:2926 | No text annotation Not in a motif group | homologous HL_5TBW_063 HL_43656.2 | |
| HL_3J78_102 | 1/2S/2963:2968 | GNRA Not in a motif group | homologous HL_5TBW_064 HL_42097.1 | |
| HL_3J78_103 | 1/2S/3025:3030 | GNRA Not in a motif group | geometric HL_3PDR_001 HL_42097.1 | |
| HL_3J78_104 | 1/2S/3068:3073 | Ribsomal LSU H95 Not in a motif group | homologous HL_5TBW_066 HL_46680.1 | |
| HL_3J78_105 | 1/2S/3110:3124 | No text annotation Not in a motif group | homologous HL_8C3A_068 HL_56677.7 | |
| HL_3J78_106 | 1/2S/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_3J78_107 | 1/2S/3240:3247 | No text annotation Not in a motif group | ||
| HL_3J78_108 | 1/2S/3303:3311 | No text annotation Not in a motif group | homologous HL_5TBW_070 HL_27930.1 | |
| HL_3J78_109 | 1/2S/3350:3353 | No text annotation Not in a motif group | ||
| HL_3J78_110 | 1/5S/36:41 | No text annotation Not in a motif group | geometric HL_5TBW_185 HL_87939.1 | |
| HL_3J78_111 | 1/5S/88:93 | GNRA Not in a motif group | homologous HL_4V9F_072 HL_42097.1 | |
| HL_3J78_112 | 1/8S/47:56 | No text annotation Not in a motif group | geometric HL_7A0S_001 HL_99167.1 | |
| HL_3J78_113 | 1/8S/69:89 | No text annotation Not in a motif group | ||
| HL_3J78_114 | 1/8S/108:114 | No text annotation Not in a motif group | homologous HL_5TBW_075 HL_87939.1 | |
| HL_3J78_115 | 1/8S/124:129 | No text annotation Not in a motif group | homologous HL_5TBW_076 HL_96851.2 | |
| HL_3J78_116 | 1/ET/13:23 | No text annotation Not in a motif group | homologous HL_5EL4_221 NA | |
| HL_3J78_117 | 1/ET/32:40 | No text annotation Not in a motif group | homologous HL_5UD5_002 HL_49288.1 | |
| HL_3J78_118 | 1/ET/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4YCO_003 HL_22280.1 | |
| HL_3J78_119 | 1/PT/13:23 | No text annotation Not in a motif group | homologous HL_4V9Q_213 HL_25462.2 | |
| HL_3J78_120 | 1/PT/32:40 | No text annotation Not in a motif group | homologous HL_6CFJ_107 NA | |
| HL_3J78_121 | 1/PT/54:62 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5WWT_002 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J78_016 | No text annotation | ||
| HL_3J78_081 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J78_001 | 1/1S/24:26, 1/1S/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_3J78_002 | 1/1S/35:37, 1/1S/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_3J78_003 | 1/1S/37:41, 1/1S/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_3J78_004 | 1/1S/42:48, 1/1S/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_3J78_005 | 1/1S/50:52, 1/1S/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_3J78_006 | 1/1S/58:63, 1/1S/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_3J78_007 | 1/1S/64:69, 1/1S/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_3J78_008 | 1/1S/109:112, 1/1S/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_3J78_009 | 1/1S/113:116, 1/1S/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_3J78_010 | 1/1S/117:122, 1/1S/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_3J78_011 | 1/1S/143:149, 1/1S/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_3J78_012 | 1/1S/150:152, 1/1S/162:164 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_3J78_013 | 1/1S/186:189, 1/1S/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_3J78_014 | 1/1S/204:206, 1/1S/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_3J78_015 | 1/1S/206:208, 1/1S/257:259 | No text annotation Not in a motif group | geometric IL_3U4M_001 IL_95997.1 | |
| IL_3J78_016 | 1/1S/265:267, 1/1S/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_3J78_017 | 1/1S/270:273, 1/1S/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_3J78_018 | 1/1S/274:276, 1/1S/279:282 | No text annotation Not in a motif group | geometric IL_4LFB_006 IL_95997.1 | |
| IL_3J78_019 | 1/1S/311:316, 1/1S/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_3J78_020 | 1/1S/318:323, 1/1S/345:346 | No text annotation Not in a motif group | homologous IL_4V88_403 IL_48100.2 | |
| IL_3J78_021 | 1/1S/363:365, 1/1S/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_3J78_022 | 1/1S/389:391, 1/1S/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_3J78_023 | 1/1S/411:413, 1/1S/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_3J78_024 | 1/1S/439:441, 1/1S/463:464 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_3J78_025 | 1/1S/443:447, 1/1S/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_3J78_026 | 1/1S/447:448, 1/1S/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_3J78_027 | 1/1S/480:485, 1/1S/502:508 | No text annotation Not in a motif group | ||
| IL_3J78_028 | 1/1S/517:518, 1/1S/533:535 | Single stack bend Not in a motif group | geometric IL_5VSU_003 IL_76488.2 | |
| IL_3J78_029 | 1/1S/518:520, 1/1S/532:533 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_76488.2 | |
| IL_3J78_030 | 1/1S/550:557, 1/1S/587:588 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4V88_413 IL_15861.7 | |
| IL_3J78_031 | 1/1S/557:559, 1/1S/586:587 | Single bulged U Not in a motif group | geometric IL_5TBW_053 IL_83039.13 | |
| IL_3J78_032 | 1/1S/562:568, 1/1S/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_3J78_033 | 1/1S/616:622, 1/1S/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_3J78_034 | 1/1S/624:626, 1/1S/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_3J78_035 | 1/1S/627:631, 1/1S/968:972 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_3J78_036 | 1/1S/646:648, 1/1S/686:688 | No text annotation Not in a motif group | ||
| IL_3J78_037 | 1/1S/746:747, 1/1S/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_3J78_038 | 1/1S/748:750, 1/1S/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_3J78_039 | 1/1S/751:759, 1/1S/791:798 | No text annotation Not in a motif group | homologous IL_4V88_425 IL_69091.1 | |
| IL_3J78_040 | 1/1S/817:822, 1/1S/850:854 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_3J78_041 | 1/1S/822:824, 1/1S/848:850 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_427 IL_51629.2 | |
| IL_3J78_042 | 1/1S/865:866, 1/1S/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_6N5P_003 IL_50694.2 | |
| IL_3J78_043 | 1/1S/867:869, 1/1S/958:961 | No text annotation Not in a motif group | geometric IL_1RPU_001 IL_95997.1 | |
| IL_3J78_044 | 1/1S/871:874, 1/1S/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_3J78_045 | 1/1S/874:878, 1/1S/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_3J78_046 | 1/1S/886:888, 1/1S/924:926 | No text annotation Not in a motif group | geometric IL_3IVK_002 IL_95997.1 | |
| IL_3J78_047 | 1/1S/893:899, 1/1S/910:919 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_3J78_048 | 1/1S/985:990, 1/1S/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_3J78_049 | 1/1S/990:994, 1/1S/1010:1014 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_436 IL_17136.1 | |
| IL_3J78_050 | 1/1S/1034:1036, 1/1S/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_3J78_051 | 1/1S/1041:1045, 1/1S/1073:1077 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_3J78_052 | 1/1S/1051:1053, 1/1S/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_3J78_053 | 1/1S/1111:1118, 1/1S/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_3J78_054 | 1/1S/1146:1147, 1/1S/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_3J78_055 | 1/1S/1149:1151, 1/1S/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_3J78_056 | 1/1S/1157:1160, 1/1S/1617:1621 | No text annotation Not in a motif group | ||
| IL_3J78_057 | 1/1S/1173:1175, 1/1S/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_3J78_058 | 1/1S/1178:1179, 1/1S/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_3J78_059 | 1/1S/1213:1215, 1/1S/1448:1450 | No text annotation Not in a motif group | geometric IL_4E48_005 IL_95997.1 | |
| IL_3J78_060 | 1/1S/1224:1230, 1/1S/1257:1259 | No text annotation Not in a motif group | ||
| IL_3J78_061 | 1/1S/1230:1233, 1/1S/1252:1257 | No text annotation Not in a motif group | ||
| IL_3J78_062 | 1/1S/1234:1237, 1/1S/1248:1251 | No text annotation Not in a motif group | ||
| IL_3J78_063 | 1/1S/1268:1270, 1/1S/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_3J78_064 | 1/1S/1272:1276, 1/1S/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_3J78_065 | 1/1S/1276:1278, 1/1S/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_3J78_066 | 1/1S/1280:1281, 1/1S/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_3J78_067 | 1/1S/1290:1292, 1/1S/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_3J78_068 | 1/1S/1306:1308, 1/1S/1317:1318 | Minor groove platform Not in a motif group | geometric IL_4V88_454 IL_93353.1 | |
| IL_3J78_069 | 1/1S/1339:1342, 1/1S/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_3J78_070 | 1/1S/1345:1348, 1/1S/1377:1380 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_3J78_071 | 1/1S/1352:1355, 1/1S/1368:1373 | No text annotation Not in a motif group | ||
| IL_3J78_072 | 1/1S/1389:1391, 1/1S/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_458 IL_58032.1 | |
| IL_3J78_073 | 1/1S/1488:1494, 1/1S/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_3J78_074 | 1/1S/1495:1498, 1/1S/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_3J78_075 | 1/1S/1540:1545, 1/1S/1566:1571 | No text annotation Not in a motif group | geometric IL_4V88_462 IL_19954.2 | |
| IL_3J78_076 | 1/1S/1636:1638, 1/1S/1764:1767 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_3J78_077 | 1/1S/1638:1641, 1/1S/1760:1764 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_3J78_078 | 1/1S/1642:1644, 1/1S/1757:1759 | No text annotation Not in a motif group | homologous IL_4V88_465 IL_95997.1 | |
| IL_3J78_079 | 1/1S/1644:1647, 1/1S/1753:1757 | No text annotation Not in a motif group | geometric IL_1CSL_001 IL_67743.1 | |
| IL_3J78_080 | 1/1S/1650:1652, 1/1S/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_3J78_081 | 1/1S/1653:1656, 1/1S/1744:1747 | Double sheared Not in a motif group | homologous IL_4V88_468 IL_09705.9 | |
| IL_3J78_082 | 1/1S/1656:1658, 1/1S/1743:1744 | No text annotation Not in a motif group | ||
| IL_3J78_083 | 1/1S/1665:1667, 1/1S/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_3J78_084 | 1/1S/1669:1672, 1/1S/1729:1732 | Double sheared Not in a motif group | geometric IL_4ZNP_002 IL_09705.9 | |
| IL_3J78_085 | 1/1S/1672:1674, 1/1S/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
| IL_3J78_086 | 1/1S/1675:1678, 1/1S/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_3J78_087 | 1/1S/1678:1682, 1/1S/1719:1723 | Triple sheared Not in a motif group | homologous IL_4V88_474 IL_56467.8 | |
| IL_3J78_088 | 1/2S/3:5, 1/8S/154:155 | Not an internal loop Not in a motif group | geometric IL_4UYK_002 IL_76488.2 | |
| IL_3J78_089 | 1/2S/7:8, 1/8S/150:152 | Single bulged C Not in a motif group | homologous IL_5TBW_002 IL_61258.12 | |
| IL_3J78_090 | 1/2S/11:17, 1/8S/142:147 | No text annotation Not in a motif group | geometric IL_6O5F_001 IL_04668.1 | |
| IL_3J78_091 | 1/2S/27:28, 1/2S/56:58 | No text annotation Not in a motif group | homologous IL_8C3A_004 IL_76488.2 | |
| IL_3J78_092 | 1/2S/31:38, 1/2S/45:53 | No text annotation Not in a motif group | homologous IL_8C3A_005 IL_35728.2 | |
| IL_3J78_093 | 1/2S/82:89, 1/2S/97:103 | No text annotation Not in a motif group | homologous IL_5TBW_006 IL_88613.1 | |
| IL_3J78_094 | 1/2S/123:124, 1/2S/144:149 | No text annotation Not in a motif group | geometric IL_5TBW_007 IL_19724.2 | |
| IL_3J78_095 | 1/2S/125:127, 1/2S/141:143 | No text annotation Not in a motif group | homologous IL_8C3A_008 IL_95997.1 | |
| IL_3J78_096 | 1/2S/163:165, 1/2S/257:258 | Single stack bend Not in a motif group | homologous IL_5TBW_009 IL_76488.2 | |
| IL_3J78_097 | 1/2S/169:170, 1/2S/248:253 | No text annotation Not in a motif group | homologous IL_5TBW_010 IL_74684.1 | |
| IL_3J78_098 | 1/2S/176:179, 1/2S/237:242 | No text annotation Not in a motif group | ||
| IL_3J78_099 | 1/2S/189:191, 1/2S/204:205 | No text annotation Not in a motif group | homologous IL_8C3A_013 IL_83039.13 | |
| IL_3J78_100 | 1/2S/337:339, 1/8S/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_3J78_101 | 1/2S/376:379, 1/2S/390:403 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.6 | |
| IL_3J78_102 | 1/2S/404:412, 1/8S/11:19 | No text annotation Not in a motif group | ||
| IL_3J78_103 | 1/2S/429:431, 1/2S/628:630 | No text annotation Not in a motif group | homologous IL_5TBW_016 IL_51629.2 | |
| IL_3J78_105 | 1/2S/512:513, 1/2S/577:579 | Single bulged A Not in a motif group | homologous IL_5TBW_018 IL_37497.2 | |
| IL_3J78_106 | 1/2S/517:525, 1/2S/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_3J78_107 | 1/2S/531:538, 1/2S/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_3J78_108 | 1/2S/668:670, 1/2S/792:794 | No text annotation Not in a motif group | homologous IL_8C3A_023 IL_95997.1 | |
| IL_3J78_109 | 1/2S/680:684, 1/2S/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_3J78_110 | 1/2S/725:728, 1/2S/741:745 | No text annotation Not in a motif group | homologous IL_8C3A_025 IL_07235.1 | |
| IL_3J78_111 | 1/2S/752:753, 1/2S/779:781 | No text annotation Not in a motif group | homologous IL_8C3A_026 IL_37497.2 | |
| IL_3J78_112 | 1/2S/755:756, 1/2S/775:777 | No text annotation Not in a motif group | homologous IL_8C3A_027 IL_83039.13 | |
| IL_3J78_113 | 1/2S/758:763, 1/2S/768:773 | No text annotation Not in a motif group | homologous IL_8C3A_028 IL_19954.2 | |
| IL_3J78_114 | 1/2S/803:805, 1/2S/938:940 | CC cWW Not in a motif group | geometric IL_4KNQ_004 IL_95997.1 | |
| IL_3J78_115 | 1/2S/805:809, 1/2S/931:938 | No text annotation Not in a motif group | homologous IL_5TBW_028 IL_17470.6 | |
| IL_3J78_116 | 1/2S/833:834, 1/2S/859:861 | Single bulged G Not in a motif group | geometric IL_7A0S_017 IL_00225.2 | |
| IL_3J78_117 | 1/2S/834:838, 1/2S/855:859 | No text annotation Not in a motif group | homologous IL_8C3A_033 IL_56467.8 | |
| IL_3J78_118 | 1/2S/869:872, 1/2S/888:890 | No text annotation Not in a motif group | homologous IL_8C3A_034 IL_05564.2 | |
| IL_3J78_119 | 1/2S/873:875, 1/2S/886:887 | No text annotation Not in a motif group | homologous IL_8C3A_035 IL_83039.13 | |
| IL_3J78_120 | 1/2S/907:909, 1/2S/919:923 | Multiple bulged bases Not in a motif group | geometric IL_5TBW_033 IL_90991.6 | |
| IL_3J78_121 | 1/2S/954:956, 1/2S/965:967 | No text annotation Not in a motif group | homologous IL_8C3A_037 IL_95997.1 | |
| IL_3J78_122 | 1/2S/969:970, 1/2S/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_3J78_123 | 1/2S/977:981, 1/2S/1102:1104 | No text annotation Not in a motif group | homologous IL_5TBW_036 IL_67474.4 | |
| IL_3J78_124 | 1/2S/983:985, 1/2S/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_3J78_125 | 1/2S/991:997, 1/2S/1052:1058 | No text annotation Not in a motif group | homologous IL_8C3A_041 IL_93830.3 | |
| IL_3J78_126 | 1/2S/997:998, 1/2S/1050:1052 | No text annotation Not in a motif group | homologous IL_8C3A_042 IL_42622.2 | |
| IL_3J78_127 | 1/2S/999:1004, 1/2S/1046:1049 | C-loop Not in a motif group | homologous IL_5TBW_040 IL_02509.1 | |
| IL_3J78_128 | 1/2S/1006:1009, 1/2S/1041:1044 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5C5W_001 IL_30621.2 | |
| IL_3J78_129 | 1/2S/1009:1011, 1/2S/1039:1041 | No text annotation Not in a motif group | homologous IL_8C3A_045 IL_95997.1 | |
| IL_3J78_130 | 1/2S/1014:1019, 1/2S/1033:1036 | No text annotation Not in a motif group | ||
| IL_3J78_131 | 1/2S/1069:1072, 1/2S/1086:1089 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3WBM_003 IL_30621.2 | |
| IL_3J78_132 | 1/2S/1073:1076, 1/2S/1083:1085 | Self complementary Not in a motif group | geometric IL_5M0H_001 IL_82068.2 | |
| IL_3J78_133 | 1/2S/1120:1122, 1/2S/1136:1138 | No text annotation Not in a motif group | homologous IL_5TBW_046 IL_95997.1 | |
| IL_3J78_134 | 1/2S/1167:1171, 1/2S/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_3J78_135 | 1/2S/1173:1180, 1/2S/1325:1326 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_3J78_136 | 1/2S/1180:1182, 1/2S/1324:1325 | Single bulged U Not in a motif group | geometric IL_4WF9_038 IL_83039.13 | |
| IL_3J78_137 | 1/2S/1187:1194, 1/2S/1314:1319 | No text annotation Not in a motif group | homologous IL_8C3A_054 IL_27086.1 | |
| IL_3J78_138 | 1/2S/1194:1205, 1/2S/1299:1314 | No text annotation Not in a motif group | geometric IL_5TBW_052 IL_53762.1 | |
| IL_3J78_139 | 1/2S/1207:1209, 1/2S/1296:1297 | Single bulged U Not in a motif group | homologous IL_5TBW_053 IL_83039.13 | |
| IL_3J78_140 | 1/2S/1218:1226, 1/2S/1283:1287 | No text annotation Not in a motif group | homologous IL_8C3A_057 IL_90538.4 | |
| IL_3J78_141 | 1/2S/1234:1238, 1/2S/1250:1254 | No text annotation Not in a motif group | homologous IL_8C3A_058 IL_30542.3 | |
| IL_3J78_142 | 1/2S/1262:1266, 1/2S/1275:1277 | Major groove platform with extra cWW Not in a motif group | geometric IL_1MMS_002 IL_05564.2 | |
| IL_3J78_143 | 1/2S/1376:1378, 1/2S/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_3J78_144 | 1/2S/1385:1387, 1/2S/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_3J78_145 | 1/2S/1388:1395, 1/2S/1415:1419 | Kink-turn Not in a motif group | homologous IL_5TBW_059 IL_70923.2 | |
| IL_3J78_146 | 1/2S/1398:1400, 1/2S/1411:1412 | Single bulged A Not in a motif group | homologous IL_5TBW_060 IL_37497.2 | |
| IL_3J78_147 | 1/2S/1444:1450, 1/2S/2354:2359 | No text annotation Not in a motif group | ||
| IL_3J78_148 | 1/2S/1500:1505, 1/2S/1513:1516 | No text annotation Not in a motif group | homologous IL_8C3A_066 IL_93630.2 | |
| IL_3J78_149 | 1/2S/1532:1536, 1/2S/1585:1590 | No text annotation Not in a motif group | homologous IL_8C3A_067 IL_89002.2 | |
| IL_3J78_150 | 1/2S/1563:1566, 1/2S/1572:1577 | No text annotation Not in a motif group | ||
| IL_3J78_151 | 1/2S/1618:1621, 1/2S/1824:1826 | No text annotation Not in a motif group | homologous IL_8C3A_070 IL_84698.1 | |
| IL_3J78_152 | 1/2S/1623:1626, 1/2S/1817:1822 | Multiple bulged bases with near cWW Not in a motif group | homologous IL_5TBW_065 IL_58686.2 | |
| IL_3J78_153 | 1/2S/1627:1631, 1/2S/1811:1816 | No text annotation Not in a motif group | homologous IL_8C3A_072 IL_48431.1 | |
| IL_3J78_154 | 1/2S/1645:1649, 1/2S/1806:1810 | No text annotation Not in a motif group | homologous IL_8C3A_073 IL_56467.8 | |
| IL_3J78_155 | 1/2S/1661:1663, 1/2S/1786:1788 | No text annotation Not in a motif group | homologous IL_8C3A_074 IL_95997.1 | |
| IL_3J78_156 | 1/2S/1669:1670, 1/2S/1778:1780 | No text annotation Not in a motif group | homologous IL_8C3A_075 IL_61258.12 | |
| IL_3J78_157 | 1/2S/1670:1671, 1/2S/1776:1778 | Single stack bend Not in a motif group | homologous IL_5TBW_070 IL_76488.2 | |
| IL_3J78_158 | 1/2S/1694:1698, 1/2S/1747:1752 | No text annotation Not in a motif group | homologous IL_8C3A_077 IL_69313.1 | |
| IL_3J78_159 | 1/2S/1702:1707, 1/2S/1737:1743 | No text annotation Not in a motif group | homologous IL_5TBW_072 IL_39753.1 | |
| IL_3J78_160 | 1/2S/1711:1717, 1/2S/1727:1733 | Kink-turn Not in a motif group | homologous IL_5TBW_073 IL_60192.2 | |
| IL_3J78_161 | 1/2S/1883:1889, 1/2S/2346:2349 | No text annotation Not in a motif group | homologous IL_8C3A_080 IL_49460.2 | |
| IL_3J78_162 | 1/2S/1895:1897, 1/2S/2338:2340 | No text annotation Not in a motif group | homologous IL_8C3A_081 IL_54997.7 | |
| IL_3J78_163 | 1/2S/1898:1901, 1/2S/2336:2337 | No text annotation Not in a motif group | homologous IL_8C3A_082 IL_50694.2 | |
| IL_3J78_164 | 1/2S/1901:1906, 1/2S/2333:2336 | Intercalated tWH Not in a motif group | geometric IL_5TBW_077 IL_82842.2 | |
| IL_3J78_165 | 1/2S/1918:1923, 1/2S/1928:1934 | No text annotation Not in a motif group | homologous IL_8C3A_084 IL_65969.2 | |
| IL_3J78_166 | 1/2S/1940:1942, 1/2S/2106:2108 | No text annotation Not in a motif group | homologous IL_8C3A_085 IL_95997.1 | |
| IL_3J78_167 | 1/2S/1946:1948, 1/2S/2098:2102 | No text annotation Not in a motif group | ||
| IL_3J78_168 | 1/2S/2128:2129, 1/2S/2323:2325 | No text annotation Not in a motif group | homologous IL_8C3A_087 IL_37497.2 | |
| IL_3J78_169 | 1/2S/2156:2161, 1/2S/2173:2180 | Kink-turn related Not in a motif group | homologous IL_5TBW_083 IL_64509.1 | |
| IL_3J78_170 | 1/2S/2196:2199, 1/2S/2245:2246 | No text annotation Not in a motif group | homologous IL_8C3A_089 IL_88739.1 | |
| IL_3J78_171 | 1/2S/2200:2201, 1/2S/2241:2244 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5TBW_085 IL_16396.2 | |
| IL_3J78_172 | 1/2S/2204:2210, 1/2S/2235:2238 | No text annotation Not in a motif group | ||
| IL_3J78_173 | 1/2S/2211:2217, 1/2S/2228:2234 | No text annotation Not in a motif group | homologous IL_8C3A_093 IL_36973.6 | |
| IL_3J78_174 | 1/2S/2276:2277, 1/2S/2307:2310 | No text annotation Not in a motif group | geometric IL_4V9F_070 IL_59677.2 | |
| IL_3J78_175 | 1/2S/2277:2288, 1/2S/2304:2307 | No text annotation Not in a motif group | homologous IL_8C3A_095 IL_81589.2 | |
| IL_3J78_176 | 1/2S/2391:2394, 1/2S/2986:2988 | No text annotation Not in a motif group | homologous IL_8C3A_096 IL_63450.2 | |
| IL_3J78_177 | 1/2S/2396:2398, 1/2S/2981:2984 | Minor groove platform with intercalation Not in a motif group | homologous IL_5TBW_092 IL_54678.5 | |
| IL_3J78_178 | 1/2S/2409:2411, 1/2S/2811:2812 | No text annotation Not in a motif group | homologous IL_8C3A_098 IL_83039.13 | |
| IL_3J78_179 | 1/2S/2412:2413, 1/2S/2807:2810 | No text annotation Not in a motif group | homologous IL_8C3A_099 IL_42622.2 | |
| IL_3J78_180 | 1/2S/2423:2425, 1/2S/2604:2607 | No text annotation Not in a motif group | homologous IL_8C3A_100 IL_38958.7 | |
| IL_3J78_181 | 1/2S/2520:2526, 1/2S/2584:2587 | No text annotation Not in a motif group | homologous IL_5TBW_096 IL_74114.1 | |
| IL_3J78_182 | 1/2S/2614:2615, 1/2S/2625:2627 | Single bulged A Not in a motif group | homologous IL_5TBW_098 IL_37497.2 | |
| IL_3J78_183 | 1/2S/2666:2668, 1/2S/2686:2690 | No text annotation Not in a motif group | homologous IL_8C3A_108 IL_38958.7 | |
| IL_3J78_184 | 1/2S/2718:2721, 1/2S/2735:2738 | No text annotation Not in a motif group | homologous IL_8C3A_109 IL_30621.2 | |
| IL_3J78_185 | 1/2S/2770:2773, 1/2S/2787:2788 | No text annotation Not in a motif group | homologous IL_8C3A_110 IL_76488.2 | |
| IL_3J78_186 | 1/2S/2823:2826, 1/2S/2863:2867 | No text annotation Not in a motif group | homologous IL_8C3A_111 IL_58686.2 | |
| IL_3J78_187 | 1/2S/2826:2828, 1/2S/2862:2863 | Major groove platform Not in a motif group | geometric IL_5TBW_104 IL_76223.2 | |
| IL_3J78_188 | 1/2S/2828:2830, 1/2S/2858:2862 | No text annotation Not in a motif group | geometric IL_5TBW_105 IL_92788.2 | |
| IL_3J78_189 | 1/2S/2835:2839, 1/2S/2849:2853 | No text annotation Not in a motif group | homologous IL_8C3A_114 NA | |
| IL_3J78_190 | 1/2S/2876:2877, 1/2S/2949:2951 | Major groove platform Not in a motif group | homologous IL_5TBW_107 IL_76223.2 | |
| IL_3J78_191 | 1/2S/2879:2881, 1/2S/2943:2947 | No text annotation Not in a motif group | homologous IL_8C3A_116 IL_90933.2 | |
| IL_3J78_192 | 1/2S/2881:2882, 1/2S/2940:2943 | No text annotation Not in a motif group | homologous IL_8C3A_117 IL_71530.2 | |
| IL_3J78_193 | 1/2S/2889:2892, 1/2S/2909:2914 | No text annotation Not in a motif group | ||
| IL_3J78_194 | 1/2S/2918:2920, 1/2S/2926:2928 | No text annotation Not in a motif group | homologous IL_8C3A_120 IL_95997.1 | |
| IL_3J78_195 | 1/2S/2960:2961, 1/2S/2970:2972 | Single bulged A Not in a motif group | geometric IL_2VPL_002 IL_37497.2 | |
| IL_3J78_196 | 1/2S/3004:3007, 1/2S/3139:3144 | No text annotation Not in a motif group | homologous IL_8C3A_123 IL_09705.9 | |
| IL_3J78_197 | 1/2S/3012:3014, 1/2S/3040:3042 | No text annotation Not in a motif group | homologous IL_8C3A_124 IL_95997.1 | |
| IL_3J78_198 | 1/2S/3018:3025, 1/2S/3030:3036 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_116 IL_04346.7 | |
| IL_3J78_199 | 1/2S/3047:3051, 1/2S/3091:3094 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_5TBW_117 IL_37712.2 | |
| IL_3J78_200 | 1/2S/3054:3059, 1/2S/3084:3088 | No text annotation Not in a motif group | homologous IL_8C3A_127 IL_17136.1 | |
| IL_3J78_201 | 1/2S/3063:3064, 1/2S/3077:3080 | No text annotation Not in a motif group | homologous IL_8C3A_128 IL_71530.2 | |
| IL_3J78_202 | 1/2S/3103:3107, 1/2S/3127:3131 | No text annotation Not in a motif group | ||
| IL_3J78_203 | 1/2S/3163:3166, 1/2S/3284:3287 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.2 | |
| IL_3J78_204 | 1/2S/3168:3170, 1/2S/3280:3282 | No text annotation Not in a motif group | homologous IL_5TBW_122 IL_95997.1 | |
| IL_3J78_205 | 1/2S/3177:3179, 1/2S/3210:3211 | Single bulged A Not in a motif group | geometric IL_5TBW_123 IL_37497.2 | |
| IL_3J78_206 | 1/2S/3179:3188, 1/2S/3204:3210 | No text annotation Not in a motif group | homologous IL_5TBW_124 IL_15174.1 | |
| IL_3J78_207 | 1/2S/3193:3194, 1/2S/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_3J78_208 | 1/2S/3225:3230, 1/2S/3257:3260 | No text annotation Not in a motif group | ||
| IL_3J78_209 | 1/2S/3233:3235, 1/2S/3252:3254 | No text annotation Not in a motif group | homologous IL_5TBW_127 IL_95997.1 | |
| IL_3J78_210 | 1/2S/3235:3238, 1/2S/3249:3252 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_3J78_211 | 1/2S/3300:3303, 1/2S/3311:3314 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_3TZR_003 IL_30621.2 | |
| IL_3J78_212 | 1/2S/3318:3320, 1/2S/3387:3388 | No text annotation Not in a motif group | homologous IL_8C3A_136 IL_83039.13 | |
| IL_3J78_213 | 1/2S/3324:3325, 1/2S/3381:3383 | Single bulged U Not in a motif group | homologous IL_5TBW_131 IL_83039.13 | |
| IL_3J78_214 | 1/2S/3328:3330, 1/2S/3373:3378 | No text annotation Not in a motif group | homologous IL_8C3A_138 IL_90933.2 | |
| IL_3J78_215 | 1/2S/3332:3337, 1/2S/3367:3371 | No text annotation Not in a motif group | homologous IL_8C3A_139 IL_83162.5 | |
| IL_3J78_216 | 1/2S/3340:3342, 1/2S/3363:3364 | No text annotation Not in a motif group | homologous IL_8C3A_140 IL_83039.13 | |
| IL_3J78_217 | 1/2S/3342:3345, 1/2S/3360:3363 | No text annotation Not in a motif group | homologous IL_8C3A_141 IL_09705.9 | |
| IL_3J78_218 | 1/2S/3349:3350, 1/2S/3353:3356 | No text annotation Not in a motif group | ||
| IL_3J78_219 | 1/5S/15:16, 1/5S/63:65 | Single bulged A Not in a motif group | homologous IL_5TBW_372 IL_37497.2 | |
| IL_3J78_220 | 1/5S/21:27, 1/5S/53:58 | No text annotation Not in a motif group | homologous IL_5TBW_373 IL_10207.2 | |
| IL_3J78_221 | 1/5S/28:29, 1/5S/49:52 | Minor groove platform Not in a motif group | homologous IL_5TBW_374 IL_63797.2 | |
| IL_3J78_222 | 1/5S/29:30, 1/5S/47:49 | Single stack bend Not in a motif group | geometric IL_5TBW_375 IL_76488.2 | |
| IL_3J78_223 | 1/5S/32:36, 1/5S/41:45 | Symmetric double minor groove platform Not in a motif group | homologous IL_5TBW_376 IL_58103.6 | |
| IL_3J78_224 | 1/5S/72:80, 1/5S/100:106 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5TBW_377 IL_04346.7 | |
| IL_3J78_225 | 1/5S/84:87, 1/5S/94:96 | No text annotation Not in a motif group | homologous IL_5TBW_378 IL_95997.1 | |
| IL_3J78_226 | 1/8S/64:66, 1/8S/93:96 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5TBW_145 IL_82068.2 | |
| IL_3J78_227 | 1/8S/68:69, 1/8S/89:91 | Single bulged U Not in a motif group | homologous IL_5TBW_146 IL_83039.13 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J78_104 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3J78_001 | 1/1S/41:42, 1/1S/433:439, 1/1S/464:466 | No text annotation Not in a motif group | ||
| J3_3J78_002 | 1/1S/633:635, 1/1S/861:865, 1/1S/965:966 | No text annotation Not in a motif group | ||
| J3_3J78_003 | 1/1S/760:763, 1/1S/773:775, 1/1S/785:790 | No text annotation Not in a motif group | homologous J3_4V88_032 NA | |
| J3_3J78_004 | 1/1S/881:884, 1/1S/928:936, 1/1S/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_3J78_005 | 1/1S/1037:1039, 1/1S/1079:1083, 1/1S/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_3J78_006 | 1/1S/1161:1164, 1/1S/1581:1587, 1/1S/1609:1616 | No text annotation Not in a motif group | homologous J3_4V88_035 NA | |
| J3_3J78_007 | 1/1S/1168:1171, 1/1S/1468:1470, 1/1S/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_3J78_008 | 1/1S/1180:1187, 1/1S/1198:1209, 1/1S/1454:1458 | No text annotation Not in a motif group | ||
| J3_3J78_009 | 1/1S/1215:1220, 1/1S/1263:1267, 1/1S/1442:1448 | No text annotation Not in a motif group | homologous J3_4V88_038 NA | |
| J3_3J78_010 | 1/1S/1283:1288, 1/1S/1327:1332, 1/1S/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_3J78_011 | 1/1S/1293:1294, 1/1S/1303:1306, 1/1S/1318:1322 | No text annotation Not in a motif group | ||
| J3_3J78_012 | 1/1S/1336:1338, 1/1S/1386:1389, 1/1S/1412:1415 | No text annotation Not in a motif group | homologous J3_4V88_040 NA | |
| J3_3J78_013 | 1/1S/1470:1474, 1/1S/1533:1540, 1/1S/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA | |
| J3_3J78_014 | 1/2S/113:123, 1/2S/149:158, 1/2S/263:267 | No text annotation Not in a motif group | ||
| J3_3J78_015 | 1/2S/369:376, 1/2S/403:404, 1/8S/19:20 | No text annotation Not in a motif group | homologous J3_5TBW_002 NA | |
| J3_3J78_016 | 1/2S/502:503, 1/2S/588:597, 1/2S/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA | |
| J3_3J78_017 | 1/2S/814:820, 1/2S/905:907, 1/2S/923:926 | No text annotation Not in a motif group | homologous J3_8C3A_003 NA | |
| J3_3J78_018 | 1/2S/828:831, 1/2S/863:867, 1/2S/892:897 | No text annotation Not in a motif group | homologous J3_5TBW_005 NA | |
| J3_3J78_019 | 1/2S/986:987, 1/2S/1062:1066, 1/2S/1092:1098 | No text annotation Not in a motif group | homologous J3_5TBW_006 NA | |
| J3_3J78_020 | 1/2S/1230:1232, 1/2S/1256:1262, 1/2S/1277:1279 | No text annotation Not in a motif group | homologous J3_5TBW_007 NA | |
| J3_3J78_021 | 1/2S/1479:1485, 1/2S/1857:1859, 1/2S/1871:1874 | No text annotation Not in a motif group | homologous J3_5TBW_008 NA | |
| J3_3J78_022 | 1/2S/1488:1492, 1/2S/1836:1843, 1/2S/1852:1854 | No text annotation Not in a motif group | ||
| J3_3J78_023 | 1/2S/1526:1531, 1/2S/1591:1595, 1/2S/1612:1613 | No text annotation Not in a motif group | homologous J3_5TBW_010 NA | |
| J3_3J78_024 | 1/2S/1631:1632, 1/2S/1641:1645, 1/2S/1810:1811 | No text annotation Not in a motif group | ||
| J3_3J78_025 | 1/2S/2432:2435, 1/2S/2512:2517, 1/2S/2590:2597 | No text annotation Not in a motif group | homologous J3_8C3A_008 NA | |
| J3_3J78_026 | 1/2S/2529:2532, 1/2S/2547:2563, 1/2S/2578:2581 | No text annotation Not in a motif group | ||
| J3_3J78_027 | 1/2S/2664:2666, 1/2S/2690:2692, 1/2S/2701:2706 | No text annotation Not in a motif group | homologous J3_5TBW_013 NA | |
| J3_3J78_028 | 1/2S/2886:2889, 1/2S/2914:2916, 1/2S/2930:2936 | No text annotation Not in a motif group | ||
| J3_3J78_029 | 1/2S/3298:3300, 1/2S/3314:3318, 1/2S/3388:3390 | No text annotation Not in a motif group | homologous J3_5TBW_015 NA | |
| J3_3J78_030 | 1/5S/9:14, 1/5S/66:67, 1/5S/111:112 | No text annotation Not in a motif group | homologous J3_5TBW_045 NA | |
| J3_3J78_031 | 1/8S/44:45, 1/8S/58:64, 1/8S/96:100 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: