3JA1 Internal, hairpin and 3-way junction loop motifs
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/LA/24:30,1/LA/510:516 | NA |
2 | ➜ | 1/LA/36:37,1/LA/442:444 | NA |
3 | ➜ | 1/LA/43:44,1/LA/434:436 | NA |
4 | ➜ | 1/LA/81:85,1/LA/97:105 | NA |
5 | ➜ | 1/LA/183:184,1/LA/212:214 | NA |
6 | ➜ | 1/LA/188:194,1/LA/201:208 | NA |
7 | ➜ | 1/LA/239:245,1/LA/253:258 | NA |
8 | ➜ | 1/LA/269:271,1/LA/366:370 | NA |
9 | ➜ | 1/LA/274:281,1/LA/359:363 | NA |
10 | ➜ | 1/LA/293:295,1/LA/343:347 | NA |
11 | ➜ | 1/LA/481:484,1/LA/496:509 | NA |
12 | ➜ | 1/LA/536:539,1/LA/554:557 | NA |
13 | ➜ | 1/LA/564:566,1/LA/575:577 | NA |
14 | ➜ | 1/LA/606:610,1/LA/618:622 | NA |
15 | ➜ | 1/LA/672:674,1/LA/806:808 | NA |
16 | ➜ | 1/LA/674:678,1/LA/799:806 | NA |
17 | ➜ | 1/LA/697:698,1/LA/763:765 | NA |
18 | ➜ | 1/LA/702:703,1/LA/728:730 | NA |
19 | ➜ | 1/LA/703:707,1/LA/724:728 | NA |
20 | ➜ | 1/LA/738:740,1/LA/757:758 | NA |
21 | ➜ | 1/LA/775:777,1/LA/787:791 | NA |
22 | ➜ | 1/LA/843:845,1/LA/934:935 | NA |
23 | ➜ | 1/LA/845:848,1/LA/930:934 | NA |
24 | ➜ | 1/LA/849:851,1/LA/926:929 | NA |
25 | ➜ | 1/LA/856:862,1/LA/915:921 | NA |
26 | ➜ | 1/LA/862:863,1/LA/913:915 | NA |
27 | ➜ | 1/LA/863:868,1/LA/909:913 | NA |
28 | ➜ | 1/LA/870:872,1/LA/905:907 | NA |
29 | ➜ | 1/LA/875:879,1/LA/898:902 | NA |
30 | ➜ | 1/LA/880:881,1/LA/895:897 | NA |
31 | ➜ | 1/LA/881:883,1/LA/894:895 | NA |
32 | ➜ | 1/LA/883:884,1/LA/892:894 | NA |
33 | ➜ | 1/LA/994:996,1/LA/1159:1160 | NA |
34 | ➜ | 1/LA/998:1002,1/LA/1153:1157 | NA |
35 | ➜ | 1/LA/1004:1011,1/LA/1150:1151 | NA |
36 | ➜ | 1/LA/1011:1013,1/LA/1149:1150 | NA |
37 | ➜ | 1/LA/1018:1024,1/LA/1140:1144 | NA |
38 | ➜ | 1/LA/1024:1030,1/LA/1124:1140 | NA |
39 | ➜ | 1/LA/1031:1034,1/LA/1121:1123 | NA |
40 | ➜ | 1/LA/1038:1041,1/LA/1114:1117 | NA |
41 | ➜ | 1/LA/1043:1051,1/LA/1108:1112 | NA |
42 | ➜ | 1/LA/1059:1062,1/LA/1076:1079 | NA |
43 | ➜ | 1/LA/1087:1090,1/LA/1101:1102 | NA |
44 | ➜ | 1/LA/1196:1199,1/LA/1246:1250 | NA |
45 | ➜ | 1/LA/1202:1207,1/LA/1239:1243 | NA |
46 | ➜ | 1/LA/1208:1215,1/LA/1234:1238 | NA |
47 | ➜ | 1/LA/1262:1269,1/LA/2011:2017 | NA |
48 | ➜ | 1/LA/1310:1313,1/LA/1603:1604 | NA |
49 | ➜ | 1/LA/1319:1323,1/LA/1331:1333 | NA |
50 | ➜ | 1/LA/1351:1355,1/LA/1376:1380 | NA |
51 | ➜ | 1/LA/1357:1361,1/LA/1370:1374 | NA |
52 | ➜ | 1/LA/1415:1416,1/LA/1582:1587 | NA |
53 | ➜ | 1/LA/1417:1421,1/LA/1577:1581 | NA |
54 | ➜ | 1/LA/1432:1435,1/LA/1557:1561 | NA |
55 | ➜ | 1/LA/1437:1440,1/LA/1551:1555 | NA |
56 | ➜ | 1/LA/1468:1471,1/LA/1520:1524 | NA |
57 | ➜ | 1/LA/1474:1479,1/LA/1512:1517 | NA |
58 | ➜ | 1/LA/1480:1482,1/LA/1507:1511 | NA |
59 | ➜ | 1/LA/1489:1491,1/LA/1499:1500 | NA |
60 | ➜ | 1/LA/1526:1529,1/LA/1542:1546 | NA |
61 | ➜ | 1/LA/1651:1656,1/LA/2004:2006 | NA |
62 | ➜ | 1/LA/1663:1665,1/LA/1995:1997 | NA |
63 | ➜ | 1/LA/1666:1669,1/LA/1993:1994 | NA |
64 | ➜ | 1/LA/1669:1674,1/LA/1990:1993 | NA |
65 | ➜ | 1/LA/1686:1691,1/LA/1696:1702 | NA |
66 | ➜ | 1/LA/1712:1718,1/LA/1742:1746 | NA |
67 | ➜ | 1/LA/1720:1725,1/LA/1735:1740 | NA |
68 | ➜ | 1/LA/1727:1728,1/LA/1731:1733 | NA |
69 | ➜ | 1/LA/1770:1771,1/LA/1980:1982 | NA |
70 | ➜ | 1/LA/1798:1804,1/LA/1813:1821 | NA |
71 | ➜ | 1/LA/1837:1840,1/LA/1902:1903 | NA |
72 | ➜ | 1/LA/1841:1842,1/LA/1898:1901 | NA |
73 | ➜ | 1/LA/1845:1849,1/LA/1893:1895 | NA |
74 | ➜ | 1/LA/1861:1863,1/LA/1879:1881 | NA |
75 | ➜ | 1/LA/1864:1867,1/LA/1874:1878 | NA |
76 | ➜ | 1/LA/1933:1934,1/LA/1964:1967 | NA |
77 | ➜ | 1/LA/1934:1947,1/LA/1959:1964 | NA |
78 | ➜ | 1/LA/2050:2052,1/LA/2617:2618 | NA |
79 | ➜ | 1/LA/2054:2056,1/LA/2612:2615 | NA |
80 | ➜ | 1/LA/2067:2069,1/LA/2442:2443 | NA |
81 | ➜ | 1/LA/2069:2071,1/LA/2438:2442 | NA |
82 | ➜ | 1/LA/2081:2083,1/LA/2236:2239 | NA |
83 | ➜ | 1/LA/2085:2087,1/LA/2232:2234 | NA |
84 | ➜ | 1/LA/2103:2106,1/LA/2183:2186 | NA |
85 | ➜ | 1/LA/2106:2110,1/LA/2179:2183 | NA |
86 | ➜ | 1/LA/2110:2120,1/LA/2177:2179 | NA |
87 | ➜ | 1/LA/2120:2123,1/LA/2175:2177 | NA |
88 | ➜ | 1/LA/2202:2204,1/LA/2220:2221 | NA |
89 | ➜ | 1/LA/2297:2299,1/LA/2317:2321 | NA |
90 | ➜ | 1/LA/2350:2353,1/LA/2364:2367 | NA |
91 | ➜ | 1/LA/2401:2403,1/LA/2414:2415 | NA |
92 | ➜ | 1/LA/2456:2459,1/LA/2493:2495 | NA |
93 | ➜ | 1/LA/2459:2461,1/LA/2489:2493 | NA |
94 | ➜ | 1/LA/2466:2470,1/LA/2480:2484 | NA |
95 | ➜ | 1/LA/2507:2508,1/LA/2580:2582 | NA |
96 | ➜ | 1/LA/2510:2513,1/LA/2571:2578 | NA |
97 | ➜ | 1/LA/2521:2523,1/LA/2540:2544 | NA |
98 | ➜ | 1/LA/2524:2526,1/LA/2537:2539 | NA |
99 | ➜ | 1/LA/2591:2592,1/LA/2601:2603 | NA |
100 | ➜ | 1/LA/2636:2640,1/LA/2774:2782 | NA |
101 | ➜ | 1/LA/2652:2658,1/LA/2663:2668 | NA |
102 | ➜ | 1/LA/2680:2684,1/LA/2725:2727 | NA |
103 | ➜ | 1/LA/2687:2691,1/LA/2718:2722 | NA |
104 | ➜ | 1/LA/2694:2696,1/LA/2711:2715 | NA |
105 | ➜ | 1/LA/2737:2742,1/LA/2762:2767 | NA |
106 | ➜ | 1/LA/2806:2811,1/LA/2889:2892 | NA |
107 | ➜ | 1/LA/2838:2839,1/LA/2878:2880 | NA |
108 | ➜ | 1/LA/2843:2846,1/LA/2870:2874 | NA |
109 | ➜ | 1/LA/2847:2852,1/LA/2865:2869 | NA |
110 | ➜ | 1/LB/17:18,1/LB/65:67 | NA |
111 | ➜ | 1/LB/23:28,1/LB/56:60 | NA |
112 | ➜ | 1/LB/30:31,1/LB/51:54 | NA |
113 | ➜ | 1/LB/34:38,1/LB/44:48 | NA |
114 | ➜ | 1/LB/71:79,1/LB/97:105 | NA |
115 | ➜ | 1/SA/30:34,1/SA/550:553 | NA |
116 | ➜ | 1/SA/44:45,1/SA/396:398 | NA |
117 | ➜ | 1/SA/47:52,1/SA/359:361 | NA |
118 | ➜ | 1/SA/54:56,1/SA/356:357 | NA |
119 | ➜ | 1/SA/63:66,1/SA/103:104 | NA |
120 | ➜ | 1/SA/67:69,1/SA/99:102 | NA |
121 | ➜ | 1/SA/70:73,1/SA/97:98 | NA |
122 | ➜ | 1/SA/75:77,1/SA/92:95 | NA |
123 | ➜ | 1/SA/128:131,1/SA/231:233 | NA |
124 | ➜ | 1/SA/132:139,1/SA/224:230 | NA |
125 | ➜ | 1/SA/144:146,1/SA/176:178 | NA |
126 | ➜ | 1/SA/147:153,1/SA/168:175 | NA |
127 | ➜ | 1/SA/203:206,1/SA/213:214 | NA |
128 | ➜ | 1/SA/242:247,1/SA/277:284 | NA |
129 | ➜ | 1/SA/249:252,1/SA/274:275 | NA |
130 | ➜ | 1/SA/292:293,1/SA/304:308 | NA |
131 | ➜ | 1/SA/367:369,1/SA/392:393 | NA |
132 | ➜ | 1/SA/371:377,1/SA/386:390 | NA |
133 | ➜ | 1/SA/409:416,1/SA/427:433 | NA |
134 | ➜ | 1/SA/440:442,1/SA/492:497 | NA |
135 | ➜ | 1/SA/445:450,1/SA/483:489 | NA |
136 | ➜ | 1/SA/450:455,1/SA/477:483 | NA |
137 | ➜ | 1/SA/456:460,1/SA/471:476 | NA |
138 | ➜ | 1/SA/460:462,1/SA/470:471 | NA |
139 | ➜ | 1/SA/504:511,1/SA/540:541 | NA |
140 | ➜ | 1/SA/515:521,1/SA/528:536 | NA |
141 | ➜ | 1/SA/569:575,1/SA/880:881 | NA |
142 | ➜ | 1/SA/579:584,1/SA/757:762 | NA |
143 | ➜ | 1/SA/594:596,1/SA/644:645 | NA |
144 | ➜ | 1/SA/597:599,1/SA/639:643 | NA |
145 | ➜ | 1/SA/605:612,1/SA/628:633 | NA |
146 | ➜ | 1/SA/654:655,1/SA/751:754 | NA |
147 | ➜ | 1/SA/659:660,1/SA/745:747 | NA |
148 | ➜ | 1/SA/662:666,1/SA/740:743 | NA |
149 | ➜ | 1/SA/673:678,1/SA/712:717 | NA |
150 | ➜ | 1/SA/684:688,1/SA/699:706 | NA |
151 | ➜ | 1/SA/774:778,1/SA/804:805 | NA |
152 | ➜ | 1/SA/779:783,1/SA/799:803 | NA |
153 | ➜ | 1/SA/887:894,1/SA/905:910 | NA |
154 | ➜ | 1/SA/922:924,1/SA/1392:1395 | NA |
155 | ➜ | 1/SA/925:927,1/SA/1390:1391 | NA |
156 | ➜ | 1/SA/933:935,1/SA/1380:1384 | NA |
157 | ➜ | 1/SA/953:954,1/SA/1226:1228 | NA |
158 | ➜ | 1/SA/993:997,1/SA/1044:1045 | NA |
159 | ➜ | 1/SA/998:999,1/SA/1041:1043 | NA |
160 | ➜ | 1/SA/1048:1051,1/SA/1207:1209 | NA |
161 | ➜ | 1/SA/1051:1056,1/SA/1204:1207 | NA |
162 | ➜ | 1/SA/1057:1058,1/SA/1199:1203 | NA |
163 | ➜ | 1/SA/1060:1061,1/SA/1195:1197 | NA |
164 | ➜ | 1/SA/1061:1063,1/SA/1193:1195 | NA |
165 | ➜ | 1/SA/1124:1128,1/SA/1144:1149 | NA |
166 | ➜ | 1/SA/1129:1132,1/SA/1142:1143 | NA |
167 | ➜ | 1/SA/1158:1162,1/SA/1174:1181 | NA |
168 | ➜ | 1/SA/1247:1253,1/SA/1284:1290 | NA |
169 | ➜ | 1/SA/1255:1258,1/SA/1277:1282 | NA |
170 | ➜ | 1/SA/1259:1263,1/SA/1272:1276 | NA |
171 | ➜ | 1/SA/1303:1308,1/SA/1329:1334 | NA |
172 | ➜ | 1/SA/1399:1401,1/SA/1501:1504 | NA |
173 | ➜ | 1/SA/1401:1404,1/SA/1497:1501 | NA |
174 | ➜ | 1/SA/1405:1407,1/SA/1494:1496 | NA |
175 | ➜ | 1/SA/1407:1409,1/SA/1491:1494 | NA |
176 | ➜ | 1/SA/1412:1415,1/SA/1485:1488 | NA |
177 | ➜ | 1/SA/1416:1420,1/SA/1480:1484 | NA |
178 | ➜ | 1/SA/1430:1435,1/SA/1466:1470 | NA |
179 | ➜ | 1/SA/1437:1443,1/SA/1459:1464 | NA |
180 | ➜ | 1/SA/1445:1448,1/SA/1455:1457 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/LA/59:68 | NA |
2 | ➜ | 1/LA/87:95 | NA |
3 | ➜ | 1/LA/123:128 | NA |
4 | ➜ | 1/LA/137:142 | NA |
5 | ➜ | 1/LA/158:168 | NA |
6 | ➜ | 1/LA/194:201 | NA |
7 | ➜ | 1/LA/225:230 | NA |
8 | ➜ | 1/LA/246:252 | NA |
9 | ➜ | 1/LA/305:312 | NA |
10 | ➜ | 1/LA/319:323 | NA |
11 | ➜ | 1/LA/327:335 | NA |
12 | ➜ | 1/LA/381:393 | NA |
13 | ➜ | 1/LA/410:417 | NA |
14 | ➜ | 1/LA/462:467 | NA |
15 | ➜ | 1/LA/487:493 | NA |
16 | ➜ | 1/LA/543:550 | NA |
17 | ➜ | 1/LA/566:575 | NA |
18 | ➜ | 1/LA/611:617 | NA |
19 | ➜ | 1/LA/629:634 | NA |
20 | ➜ | 1/LA/640:648 | NA |
21 | ➜ | 1/LA/712:719 | NA |
22 | ➜ | 1/LA/744:753 | NA |
23 | ➜ | 1/LA/779:785 | NA |
24 | ➜ | 1/LA/826:831 | NA |
25 | ➜ | 1/LA/885:891 | NA |
26 | ➜ | 1/LA/954:963 | NA |
27 | ➜ | 1/LA/978:985 | NA |
28 | ➜ | 1/LA/1064:1074 | NA |
29 | ➜ | 1/LA/1092:1099 | NA |
30 | ➜ | 1/LA/1172:1177 | NA |
31 | ➜ | 1/LA/1222:1227 | NA |
32 | ➜ | 1/LA/1281:1289 | NA |
33 | ➜ | 1/LA/1324:1330 | NA |
34 | ➜ | 1/LA/1363:1368 | NA |
35 | ➜ | 1/LA/1389:1398 | NA |
36 | ➜ | 1/LA/1450:1461 | NA |
37 | ➜ | 1/LA/1492:1498 | NA |
38 | ➜ | 1/LA/1533:1538 | NA |
39 | ➜ | 1/LA/1565:1568 | NA |
40 | ➜ | 1/LA/1612:1619 | NA |
41 | ➜ | 1/LA/1630:1636 | NA |
42 | ➜ | 1/LA/1691:1696 | NA |
43 | ➜ | 1/LA/1728:1731 | NA |
44 | ➜ | 1/LA/1752:1756 | NA |
45 | ➜ | 1/LA/1777:1787 | NA |
46 | ➜ | 1/LA/1806:1811 | NA |
47 | ➜ | 1/LA/1868:1873 | NA |
48 | ➜ | 1/LA/1910:1920 | NA |
49 | ➜ | 1/LA/1949:1957 | NA |
50 | ➜ | 1/LA/2027:2036 | NA |
51 | ➜ | 1/LA/2142:2149 | NA |
52 | ➜ | 1/LA/2209:2215 | NA |
53 | ➜ | 1/LA/2246:2258 | NA |
54 | ➜ | 1/LA/2264:2276 | NA |
55 | ➜ | 1/LA/2303:2313 | NA |
56 | ➜ | 1/LA/2324:2331 | NA |
57 | ➜ | 1/LA/2356:2361 | NA |
58 | ➜ | 1/LA/2374:2379 | NA |
59 | ➜ | 1/LA/2404:2413 | NA |
60 | ➜ | 1/LA/2470:2480 | NA |
61 | ➜ | 1/LA/2528:2535 | NA |
62 | ➜ | 1/LA/2551:2557 | NA |
63 | ➜ | 1/LA/2594:2599 | NA |
64 | ➜ | 1/LA/2658:2663 | NA |
65 | ➜ | 1/LA/2700:2707 | NA |
66 | ➜ | 1/LA/2745:2759 | NA |
67 | ➜ | 1/LA/2796:2800 | NA |
68 | ➜ | 1/LA/2819:2827 | NA |
69 | ➜ | 1/LA/2856:2861 | NA |
70 | ➜ | 1/LB/38:44 | NA |
71 | ➜ | 1/LB/85:91 | NA |
72 | ➜ | 1/S2/13:23 | NA |
73 | ➜ | 1/S2/32:40 | NA |
74 | ➜ | 1/S2/54:62 | NA |
75 | ➜ | 1/SA/11:23 | NA |
76 | ➜ | 1/SA/82:87 | NA |
77 | ➜ | 1/SA/158:163 | NA |
78 | ➜ | 1/SA/186:191 | NA |
79 | ➜ | 1/SA/207:212 | NA |
80 | ➜ | 1/SA/259:267 | NA |
81 | ➜ | 1/SA/296:301 | NA |
82 | ➜ | 1/SA/320:333 | NA |
83 | ➜ | 1/SA/342:347 | NA |
84 | ➜ | 1/SA/379:384 | NA |
85 | ➜ | 1/SA/419:424 | NA |
86 | ➜ | 1/SA/462:470 | NA |
87 | ➜ | 1/SA/522:527 | NA |
88 | ➜ | 1/SA/617:623 | NA |
89 | ➜ | 1/SA/689:698 | NA |
90 | ➜ | 1/SA/726:731 | NA |
91 | ➜ | 1/SA/786:796 | NA |
92 | ➜ | 1/SA/840:846 | NA |
93 | ➜ | 1/SA/862:867 | NA |
94 | ➜ | 1/SA/897:902 | NA |
95 | ➜ | 1/SA/963:972 | NA |
96 | ➜ | 1/SA/1012:1017 | NA |
97 | ➜ | 1/SA/1028:1033 | NA |
98 | ➜ | 1/SA/1076:1081 | NA |
99 | ➜ | 1/SA/1089:1096 | NA |
100 | ➜ | 1/SA/1134:1140 | NA |
101 | ➜ | 1/SA/1165:1171 | NA |
102 | ➜ | 1/SA/1265:1270 | NA |
103 | ➜ | 1/SA/1314:1323 | NA |
104 | ➜ | 1/SA/1356:1366 | NA |
105 | ➜ | 1/SA/1449:1454 | NA |
106 | ➜ | 1/SA/1515:1520 | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | motif |
---|---|---|---|
1 | ➜ | 1/LA/30:31,1/LA/474:481,1/LA/509:510 | NA |
2 | ➜ | 1/LA/55:57,1/LA/70:77,1/LA/109:115 | NA |
3 | ➜ | 1/LA/683:689,1/LA/773:775,1/LA/791:794 | NA |
4 | ➜ | 1/LA/698:700,1/LA/732:736,1/LA/760:763 | NA |
5 | ➜ | 1/LA/1055:1057,1/LA/1081:1087,1/LA/1102:1104 | NA |
6 | ➜ | 1/LA/1298:1303,1/LA/1625:1627,1/LA/1639:1642 | NA |
7 | ➜ | 1/LA/1306:1309,1/LA/1605:1611,1/LA/1620:1622 | NA |
8 | ➜ | 1/LA/2091:2093,1/LA/2196:2200,1/LA/2223:2228 | NA |
9 | ➜ | 1/LA/2282:2285,1/LA/2383:2395,1/LA/2421:2427 | NA |
10 | ➜ | 1/LA/2295:2297,1/LA/2321:2323,1/LA/2332:2337 | NA |
11 | ➜ | 1/LA/2517:2520,1/LA/2545:2547,1/LA/2561:2567 | NA |
12 | ➜ | 1/LA/2789:2791,1/LA/2805:2806,1/LA/2892:2894 | NA |
13 | ➜ | 1/LA/2812:2815,1/LA/2831:2836,1/LA/2882:2888 | NA |
14 | ➜ | 1/LB/10:16,1/LB/68:70,1/LB/106:110 | NA |
15 | ➜ | 1/SA/46:47,1/SA/361:367,1/SA/393:395 | NA |
16 | ➜ | 1/SA/586:588,1/SA/651:654,1/SA/754:755 | NA |
17 | ➜ | 1/SA/672:673,1/SA/717:725,1/SA/732:734 | NA |
18 | ➜ | 1/SA/826:829,1/SA/857:861,1/SA/868:874 | NA |
19 | ➜ | 1/SA/943:946,1/SA/1235:1237,1/SA/1337:1340 | NA |
20 | ➜ | 1/SA/955:962,1/SA/973:984,1/SA/1221:1225 | NA |
21 | ➜ | 1/SA/990:993,1/SA/1045:1047,1/SA/1210:1215 | NA |
22 | ➜ | 1/SA/1003:1006,1/SA/1023:1027,1/SA/1034:1037 | NA |
23 | ➜ | 1/SA/1063:1068,1/SA/1107:1113,1/SA/1187:1193 | NA |
24 | ➜ | 1/SA/1073:1074,1/SA/1083:1087,1/SA/1098:1102 | NA |
25 | ➜ | 1/SA/1116:1119,1/SA/1154:1158,1/SA/1181:1184 | NA |
26 | ➜ | 1/SA/1237:1241,1/SA/1296:1303,1/SA/1334:1337 | NA |
Problematic loops
No problematic loops
Coloring options: