4V5N Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V5N_001 | 1/AA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4V5N_003 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_85603.1 | |
| HL_4V5N_004 | 1/AA/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_61849.1 | |
| HL_4V5N_005 | 1/AA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_91104.2 | |
| HL_4V5N_006 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
| HL_4V5N_007 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_4V5N_008 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V5N_010 | 1/AA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
| HL_4V5N_011 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_29960.1 | |
| HL_4V5N_012 | 1/AA/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
| HL_4V5N_013 | 1/AA/522:527 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_91104.2 | |
| HL_4V5N_014 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
| HL_4V5N_015 | 1/AA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
| HL_4V5N_016 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.3 | |
| HL_4V5N_017 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_4V5N_018 | 1/AA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_69858.1 | |
| HL_4V5N_019 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
| HL_4V5N_020 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_85603.1 | |
| HL_4V5N_021 | 1/AA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4V5N_022 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
| HL_4V5N_023 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
| HL_4V5N_024 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V5N_025 | 1/AA/1129:1143 | No text annotation Not in a motif group | ||
| HL_4V5N_026 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_4V5N_027 | 1/AA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.1 | |
| HL_4V5N_028 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
| HL_4V5N_029 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V5N_030 | 1/AA/1444:1458 | No text annotation Not in a motif group | ||
| HL_4V5N_031 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V5N_032 | 1/AV/13:22 | No text annotation Not in a motif group | homologous HL_5B63_003 HL_25462.3 | |
| HL_4V5N_033 | 1/AV/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_4V5N_034 | 1/AV/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5HR7_006 HL_22280.5 | |
| HL_4V5N_035 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_4V5N_036 | 1/BA/87:95 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_40039.1 | |
| HL_4V5N_037 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 NA | |
| HL_4V5N_038 | 1/BA/139:142A | No text annotation Not in a motif group | ||
| HL_4V5N_040 | 1/BA/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_06192.3 | |
| HL_4V5N_041 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
| HL_4V5N_042 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
| HL_4V5N_043 | 1/BA/271I:271O | No text annotation Not in a motif group | geometric HL_5TBW_044 HL_09829.1 | |
| HL_4V5N_044 | 1/BA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 NA | |
| HL_4V5N_045 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_70546.2 | |
| HL_4V5N_046 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_4V5N_047 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
| HL_4V5N_048 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_4V5N_049 | 1/BA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 NA | |
| HL_4V5N_050 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 NA | |
| HL_4V5N_052 | 1/BA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 NA | |
| HL_4V5N_053 | 1/BA/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
| HL_4V5N_054 | 1/BA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
| HL_4V5N_055 | 1/BA/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 NA | |
| HL_4V5N_056 | 1/BA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
| HL_4V5N_057 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_4V5N_058 | 1/BA/779:785 | Other HL Not in a motif group | geometric HL_2NUE_001 HL_07518.1 | |
| HL_4V5N_059 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_55195.1 | |
| HL_4V5N_060 | 1/BA/884:892 | No text annotation Not in a motif group | ||
| HL_4V5N_061 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 NA | |
| HL_4V5N_062 | 1/BA/977:986 | No text annotation Not in a motif group | ||
| HL_4V5N_065 | 1/BA/1171:1178 | No text annotation Not in a motif group | ||
| HL_4V5N_066 | 1/BA/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 NA | |
| HL_4V5N_067 | 1/BA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 NA | |
| HL_4V5N_068 | 1/BA/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.2 | |
| HL_4V5N_069 | 1/BA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.3 | |
| HL_4V5N_070 | 1/BA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
| HL_4V5N_071 | 1/BA/1450A:1461 | No text annotation Not in a motif group | ||
| HL_4V5N_072 | 1/BA/1492:1498 | No text annotation Not in a motif group | ||
| HL_4V5N_074 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
| HL_4V5N_075 | 1/BA/1612:1619 | No text annotation Not in a motif group | geometric HL_7RQB_040 NA | |
| HL_4V5N_076 | 1/BA/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 NA | |
| HL_4V5N_077 | 1/BA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 NA | |
| HL_4V5N_078 | 1/BA/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 NA | |
| HL_4V5N_079 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_4V5N_080 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.6 | |
| HL_4V5N_081 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
| HL_4V5N_082 | 1/BA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 NA | |
| HL_4V5N_083 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4V5N_084 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.2 | |
| HL_4V5N_085 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
| HL_4V5N_086 | 1/BA/2143:2148 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_29960.1 | |
| HL_4V5N_087 | 1/BA/2205:2219 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_75930.1 | |
| HL_4V5N_088 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4V5N_089 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
| HL_4V5N_090 | 1/BA/2303:2313 | No text annotation Not in a motif group | homologous HL_4WF9_051 NA | |
| HL_4V5N_091 | 1/BA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
| HL_4V5N_092 | 1/BA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
| HL_4V5N_093 | 1/BA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
| HL_4V5N_094 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
| HL_4V5N_095 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_7A0S_059 HL_06192.3 | |
| HL_4V5N_096 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 NA | |
| HL_4V5N_097 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_22584.1 | |
| HL_4V5N_098 | 1/BA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_4V5N_099 | 1/BA/2658:2663 | GNRA Not in a motif group | geometric HL_5B2P_001 HL_85603.1 | |
| HL_4V5N_100 | 1/BA/2700:2707 | No text annotation Not in a motif group | ||
| HL_4V5N_101 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 NA | |
| HL_4V5N_103 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 NA | |
| HL_4V5N_104 | 1/BA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 NA | |
| HL_4V5N_105 | 1/BB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_83767.1 | |
| HL_4V5N_106 | 1/BB/85:92 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V5N_002 | No text annotation | ||
| HL_4V5N_009 | No text annotation | ||
| HL_4V5N_039 | No text annotation | ||
| HL_4V5N_051 | No text annotation | ||
| HL_4V5N_063 | No text annotation | ||
| HL_4V5N_064 | No text annotation | ||
| HL_4V5N_073 | Other HL | ||
| HL_4V5N_102 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V5N_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
| IL_4V5N_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.7 | |
| IL_4V5N_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_14177.1 | |
| IL_4V5N_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_80097.2 | |
| IL_4V5N_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4V5N_006 | 1/AA/67:69, 1/AA/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
| IL_4V5N_007 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_43275.2 | |
| IL_4V5N_008 | 1/AA/132:136, 1/AA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.4 | |
| IL_4V5N_009 | 1/AA/148:153, 1/AA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4V5N_010 | 1/AA/186:188, 1/AA/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
| IL_4V5N_011 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
| IL_4V5N_012 | 1/AA/249:253, 1/AA/273:275 | No text annotation Not in a motif group | homologous IL_6CZR_124 IL_38684.1 | |
| IL_4V5N_013 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4V5N_014 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.17 | |
| IL_4V5N_015 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_4V5N_016 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.4 | |
| IL_4V5N_017 | 1/AA/409:416, 1/AA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4V5N_018 | 1/AA/446:450, 1/AA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_4V5N_019 | 1/AA/450:455, 1/AA/476:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_4V5N_020 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.8 | |
| IL_4V5N_021 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V5N_022 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_4V5N_023 | 1/AA/579:584, 1/AA/757:762 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_3LQX_002 IL_76308.4 | |
| IL_4V5N_024 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
| IL_4V5N_025 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.9 | |
| IL_4V5N_026 | 1/AA/605:612, 1/AA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4V5N_027 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.3 | |
| IL_4V5N_028 | 1/AA/657:658, 1/AA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
| IL_4V5N_029 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4V5N_030 | 1/AA/673:678, 1/AA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.2 | |
| IL_4V5N_031 | 1/AA/683:688, 1/AA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4V5N_032 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4V5N_033 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
| IL_4V5N_034 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V5N_035 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.7 | |
| IL_4V5N_036 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
| IL_4V5N_037 | 1/AA/933:936, 1/AA/1379:1384 | No text annotation Not in a motif group | geometric IL_6CZR_149 IL_93211.1 | |
| IL_4V5N_038 | 1/AA/952:954, 1/AA/1226:1229 | Minor groove platform with extra cWW Not in a motif group | geometric IL_4WF9_003 IL_65006.1 | |
| IL_4V5N_039 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_4V5N_040 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.17 | |
| IL_4V5N_041 | 1/AA/1052:1056, 1/AA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4V5N_042 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.2 | |
| IL_4V5N_043 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.17 | |
| IL_4V5N_044 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_86319.3 | |
| IL_4V5N_045 | 1/AA/1124:1127, 1/AA/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.7 | |
| IL_4V5N_046 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4V5N_047 | 1/AA/1255:1259, 1/AA/1276:1282 | No text annotation Not in a motif group | ||
| IL_4V5N_048 | 1/AA/1259:1262, 1/AA/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.11 | |
| IL_4V5N_049 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4V5N_050 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_4V5N_051 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V5N_052 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_5MWI_007 IL_86319.3 | |
| IL_4V5N_053 | 1/AA/1407:1409, 1/AA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.2 | |
| IL_4V5N_054 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
| IL_4V5N_055 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
| IL_4V5N_056 | 1/AA/1431:1435, 1/AA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.2 | |
| IL_4V5N_057 | 1/AA/1435:1437, 1/AA/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.3 | |
| IL_4V5N_058 | 1/AA/1440:1443, 1/AA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.3 | |
| IL_4V5N_059 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 NA | |
| IL_4V5N_060 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_7A0S_002 IL_37497.7 | |
| IL_4V5N_061 | 1/BA/42:44, 1/BA/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_4V5N_062 | 1/BA/81:85, 1/BA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
| IL_4V5N_063 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_7A0S_005 IL_76488.5 | |
| IL_4V5N_064 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.8 | |
| IL_4V5N_065 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
| IL_4V5N_066 | 1/BA/272D:272F, 1/BA/363D:364 | No text annotation Not in a motif group | geometric IL_4V9F_072 IL_63450.3 | |
| IL_4V5N_068 | 1/BA/280:285, 1/BA/356:360 | Triple sheared Not in a motif group | geometric IL_5J7L_274 IL_56467.9 | |
| IL_4V5N_069 | 1/BA/288:290, 1/BA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 NA | |
| IL_4V5N_070 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 NA | |
| IL_4V5N_071 | 1/BA/481:484, 1/BA/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 NA | |
| IL_4V5N_072 | 1/BA/564:566, 1/BA/575:577 | No text annotation Not in a motif group | geometric IL_4WF9_017 IL_86319.3 | |
| IL_4V5N_073 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.2 | |
| IL_4V5N_074 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 NA | |
| IL_4V5N_075 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.7 | |
| IL_4V5N_076 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 NA | |
| IL_4V5N_077 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 NA | |
| IL_4V5N_078 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 NA | |
| IL_4V5N_079 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_4V5N_080 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_4WF9_027 IL_90991.7 | |
| IL_4V5N_081 | 1/BA/837:838, 1/BA/940:942 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_92001.2 | |
| IL_4V5N_082 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW Not in a motif group | homologous IL_7RQB_025 NA | |
| IL_4V5N_083 | 1/BA/846:850, 1/BA/927:931 | No text annotation Not in a motif group | geometric IL_7RQB_026 NA | |
| IL_4V5N_084 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 NA | |
| IL_4V5N_085 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform Not in a motif group | geometric IL_4V9F_034 IL_42622.5 | |
| IL_4V5N_086 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 NA | |
| IL_4V5N_087 | 1/BA/870:872, 1/BA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 NA | |
| IL_4V5N_088 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.9 | |
| IL_4V5N_089 | 1/BA/880:883, 1/BA/893:897 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_003 IL_30621.4 | |
| IL_4V5N_090 | 1/BA/952:954, 1/BA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 NA | |
| IL_4V5N_091 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
| IL_4V5N_092 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.3 | |
| IL_4V5N_093 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.8 | |
| IL_4V5N_094 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.17 | |
| IL_4V5N_095 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.4 | |
| IL_4V5N_096 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
| IL_4V5N_097 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_4V5N_098 | 1/BA/1043:1054, 1/BA/1105:1112 | No text annotation Not in a motif group | ||
| IL_4V5N_101 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 NA | |
| IL_4V5N_102 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 NA | |
| IL_4V5N_103 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
| IL_4V5N_104 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 NA | |
| IL_4V5N_105 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
| IL_4V5N_106 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_4V5N_107 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
| IL_4V5N_108 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
| IL_4V5N_109 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 NA | |
| IL_4V5N_110 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
| IL_4V5N_111 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.3 | |
| IL_4V5N_112 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
| IL_4V5N_113 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
| IL_4V5N_114 | 1/BA/1448:1450, 1/BA/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
| IL_4V5N_115 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 NA | |
| IL_4V5N_116 | 1/BA/1481:1482, 1/BA/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
| IL_4V5N_117 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.7 | |
| IL_4V5N_118 | 1/BA/1526:1529, 1/BA/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 NA | |
| IL_4V5N_119 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.3 | |
| IL_4V5N_120 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.8 | |
| IL_4V5N_121 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4WF9_064 IL_50694.3 | |
| IL_4V5N_122 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7A0S_062 IL_76273.2 | |
| IL_4V5N_123 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 NA | |
| IL_4V5N_124 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 NA | |
| IL_4V5N_125 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_4V5N_126 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.4 | |
| IL_4V5N_127 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_88375.1 | |
| IL_4V5N_128 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
| IL_4V5N_129 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 NA | |
| IL_4V5N_130 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 NA | |
| IL_4V5N_131 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 NA | |
| IL_4V5N_132 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_4V5N_133 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
| IL_4V5N_134 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation Not in a motif group | ||
| IL_4V5N_135 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
| IL_4V5N_136 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 NA | |
| IL_4V5N_137 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
| IL_4V5N_138 | 1/BA/2085:2087, 1/BA/2232:2234 | No text annotation Not in a motif group | homologous IL_5J7L_326 IL_86319.3 | |
| IL_4V5N_139 | 1/BA/2107:2110, 1/BA/2179:2182 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.4 | |
| IL_4V5N_140 | 1/BA/2110:2120, 1/BA/2178:2179 | No text annotation Not in a motif group | geometric IL_3U4M_002 IL_45944.3 | |
| IL_4V5N_141 | 1/BA/2124:2127, 1/BA/2161:2174 | No text annotation Not in a motif group | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V5N_142 | 1/BA/2129:2137, 1/BA/2154:2159 | Kink-turn Not in a motif group | geometric IL_4LFB_031 IL_37722.1 | |
| IL_4V5N_143 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 NA | |
| IL_4V5N_144 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
| IL_4V5N_145 | 1/BA/2401:2403, 1/BA/2414:2415 | Major groove platform Not in a motif group | homologous IL_7A0S_082 IL_27635.4 | |
| IL_4V5N_146 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 NA | |
| IL_4V5N_147 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.4 | |
| IL_4V5N_148 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.4 | |
| IL_4V5N_149 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 NA | |
| IL_4V5N_150 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 NA | |
| IL_4V5N_151 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_4V5N_152 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.3 | |
| IL_4V5N_153 | 1/BA/2512:2513, 1/BA/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 NA | |
| IL_4V5N_154 | 1/BA/2522:2523, 1/BA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 NA | |
| IL_4V5N_155 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 NA | |
| IL_4V5N_156 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.2 | |
| IL_4V5N_157 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_16458.2 | |
| IL_4V5N_158 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.7 | |
| IL_4V5N_159 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_4V5N_160 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 NA | |
| IL_4V5N_161 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
| IL_4V5N_162 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
| IL_4V5N_163 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
| IL_4V5N_164 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
| IL_4V5N_165 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_4V9F_101 IL_37497.7 | |
| IL_4V5N_166 | 1/BB/20:23, 1/BB/60:63 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.4 | |
| IL_4V5N_167 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_4V5N_168 | 1/BB/29:31, 1/BB/51:55 | No text annotation Not in a motif group | ||
| IL_4V5N_169 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 NA | |
| IL_4V5N_170 | 1/BB/71:79, 1/BB/98:106 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V5N_067 | No text annotation | ||
| IL_4V5N_099 | No text annotation | ||
| IL_4V5N_100 | Major groove platform with extra cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V5N_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_4V5N_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_4V5N_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_4V5N_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4V5N_005 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4V5N_006 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_4V5N_007 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V5N_008 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4V5N_009 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4V5N_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4V5N_011 | 1/AA/1116:1118, 1/AA/1155:1161, 1/AA/1175:1184 | No text annotation Not in a motif group | ||
| J3_4V5N_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_4V5N_013 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_4V5N_014 | 1/BA/55:57, 1/BA/70:76, 1/BA/110:115 | No text annotation Not in a motif group | ||
| J3_4V5N_015 | 1/BA/269:271B, 1/BA/271V:272B, 1/BA/366:370 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_4V5N_016 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | homologous J3_7A0S_004 NA | |
| J3_4V5N_017 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4V5N_019 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4V5N_020 | 1/BA/1306:1309, 1/BA/1605:1612, 1/BA/1619:1622 | No text annotation Not in a motif group | ||
| J3_4V5N_021 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_4V5N_022 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4V5N_023 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_4V5N_024 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4V5N_025 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_4V5N_026 | 1/BB/11:16, 1/BB/68:70, 1/BB/107:110 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V5N_018 | No text annotation |
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