Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V5N_0011/AA/12:22No text annotation
Not in a motif group
homologous
HL_4LFB_001
HL_89881.2
HL_4V5N_0031/AA/158:163GNRA
Not in a motif group
homologous
HL_4LFB_003
HL_42097.1
HL_4V5N_0041/AA/189C:189HNo text annotation
Not in a motif group
homologous
HL_6CZR_075
HL_10278.1
HL_4V5N_0051/AA/201:216No text annotation
Not in a motif group
homologous
HL_4LFB_005
HL_56691.2
HL_4V5N_0061/AA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V5N_0071/AA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.1
HL_4V5N_0081/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V5N_0101/AA/379:384GNRA
Not in a motif group
homologous
HL_4LFB_010
HL_42097.1
HL_4V5N_0111/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V5N_0121/AA/458:473No text annotation
Not in a motif group
homologous
HL_4LFB_012
HL_43656.2
HL_4V5N_0131/AA/522:527No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_56691.2
HL_4V5N_0141/AA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.1
HL_4V5N_0151/AA/689:698No text annotation
Not in a motif group
homologous
HL_4LFB_015
HL_12326.1
HL_4V5N_0161/AA/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_4V5N_0171/AA/786:796No text annotation
Not in a motif group
homologous
HL_4LFB_017
HL_12326.1
HL_4V5N_0181/AA/838:848No text annotation
Not in a motif group
homologous
HL_6CZR_089
HL_53837.1
HL_4V5N_0191/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.1
HL_4V5N_0201/AA/897:902GNRA
Not in a motif group
homologous
HL_5J7L_020
HL_42097.1
HL_4V5N_0211/AA/963:972No text annotation
Not in a motif group
homologous
HL_4LFB_021
NA
HL_4V5N_0221/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.1
HL_4V5N_0231/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.1
HL_4V5N_0241/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V5N_0251/AA/1129:1143No text annotation
Not in a motif group
HL_4V5N_0261/AA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.1
HL_4V5N_0271/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_42097.1
HL_4V5N_0281/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_89380.2
HL_4V5N_0291/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V5N_0301/AA/1444:1458No text annotation
Not in a motif group
HL_4V5N_0311/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V5N_0321/AV/13:22No text annotation
Not in a motif group
homologous
HL_5B63_003
HL_25462.2
HL_4V5N_0331/AV/31:39No text annotation
Not in a motif group
homologous
HL_5E81_212
NA
HL_4V5N_0341/AV/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5HR7_006
HL_22280.1
HL_4V5N_0351/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.1
HL_4V5N_0361/BA/87:95No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4V5N_0371/BA/123:128No text annotation
Not in a motif group
homologous
HL_7RQB_003
HL_75407.1
HL_4V5N_0381/BA/139:142ANo text annotation
Not in a motif group
HL_4V5N_0401/BA/194:201No text annotation
Not in a motif group
homologous
HL_5J7L_139
HL_06192.2
HL_4V5N_0411/BA/225:230No text annotation
Not in a motif group
homologous
HL_7RQB_007
HL_02862.2
HL_4V5N_0421/BA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V5N_0431/BA/271I:271ONo text annotation
Not in a motif group
geometric
HL_5TBW_044
HL_09829.1
HL_4V5N_0441/BA/305:312No text annotation
Not in a motif group
homologous
HL_7RQB_010
HL_89380.2
HL_4V5N_0451/BA/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V5N_0461/BA/327:335No text annotation
Not in a motif group
homologous
HL_7RQB_012
HL_08002.8
HL_4V5N_0471/BA/382:392No text annotation
Not in a motif group
homologous
HL_7RQB_013
HL_91503.4
HL_4V5N_0481/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V5N_0491/BA/462:467No text annotation
Not in a motif group
homologous
HL_7RQB_015
HL_42097.1
HL_4V5N_0501/BA/487:493No text annotation
Not in a motif group
homologous
HL_7RQB_016
HL_42097.1
HL_4V5N_0521/BA/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_89380.2
HL_4V5N_0531/BA/612:615No text annotation
Not in a motif group
homologous
HL_7RQB_019
HL_32369.1
HL_4V5N_0541/BA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_42097.1
HL_4V5N_0551/BA/641:647No text annotation
Not in a motif group
homologous
HL_7RQB_021
HL_42097.1
HL_4V5N_0561/BA/712:719No text annotation
Not in a motif group
homologous
HL_7RQB_022
HL_84085.2
HL_4V5N_0571/BA/744:753No text annotation
Not in a motif group
homologous
HL_7RQB_023
HL_39334.6
HL_4V5N_0581/BA/779:785Other HL
Not in a motif group
geometric
HL_2NUE_001
HL_07518.1
HL_4V5N_0591/BA/826:831No text annotation
Not in a motif group
homologous
HL_4WF9_025
HL_64365.1
HL_4V5N_0601/BA/884:892No text annotation
Not in a motif group
HL_4V5N_0611/BA/955:962No text annotation
Not in a motif group
homologous
HL_7RQB_027
HL_42097.1
HL_4V5N_0621/BA/977:986No text annotation
Not in a motif group
HL_4V5N_0651/BA/1171:1178No text annotation
Not in a motif group
HL_4V5N_0661/BA/1222:1227No text annotation
Not in a motif group
homologous
HL_7RQB_032
HL_42097.1
HL_4V5N_0671/BA/1281:1289No text annotation
Not in a motif group
homologous
HL_7RQB_033
HL_89380.2
HL_4V5N_0681/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_7A0S_033
HL_46680.1
HL_4V5N_0691/BA/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_87030.2
HL_4V5N_0701/BA/1389:1398No text annotation
Not in a motif group
homologous
HL_7RQB_036
HL_69023.2
HL_4V5N_0711/BA/1450A:1461No text annotation
Not in a motif group
HL_4V5N_0721/BA/1492:1498No text annotation
Not in a motif group
HL_4V5N_0741/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V5N_0751/BA/1612:1619No text annotation
Not in a motif group
geometric
HL_7RQB_040
HL_64430.2
HL_4V5N_0761/BA/1631:1635No text annotation
Not in a motif group
homologous
HL_7RQB_041
HL_01057.1
HL_4V5N_0771/BA/1691:1696No text annotation
Not in a motif group
homologous
HL_7RQB_042
HL_03562.2
HL_4V5N_0781/BA/1720:1742No text annotation
Not in a motif group
homologous
HL_7RQB_043
HL_43656.2
HL_4V5N_0791/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V5N_0801/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_5J7L_178
HL_43613.5
HL_4V5N_0811/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_7RQB_046
HL_42097.1
HL_4V5N_0821/BA/1864:1878No text annotation
Not in a motif group
homologous
HL_7RQB_047
HL_42097.1
HL_4V5N_0831/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V5N_0841/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_5J7L_182
HL_51824.1
HL_4V5N_0851/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_7RQB_050
HL_90642.6
HL_4V5N_0861/BA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_4V5N_0871/BA/2205:2219No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V5N_0881/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7RQB_053
NA
HL_4V5N_0891/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V5N_0901/BA/2303:2313No text annotation
Not in a motif group
homologous
HL_4WF9_051
NA
HL_4V5N_0911/BA/2324:2331No text annotation
Not in a motif group
homologous
HL_7RQB_056
HL_12078.2
HL_4V5N_0921/BA/2355:2362No text annotation
Not in a motif group
homologous
HL_7RQB_057
HL_09136.1
HL_4V5N_0931/BA/2374:2379No text annotation
Not in a motif group
homologous
HL_7RQB_058
HL_42097.1
HL_4V5N_0941/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_7RQB_059
HL_30784.2
HL_4V5N_0951/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_7A0S_059
HL_06192.2
HL_4V5N_0961/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_88526.2
HL_4V5N_0971/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V5N_0981/BA/2594:2599No text annotation
Not in a motif group
homologous
HL_7RQB_063
HL_42097.1
HL_4V5N_0991/BA/2658:2663GNRA
Not in a motif group
geometric
HL_5B2P_001
HL_42097.1
HL_4V5N_1001/BA/2700:2707No text annotation
Not in a motif group
HL_4V5N_1011/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.7
HL_4V5N_1031/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_7RQB_068
HL_27930.1
HL_4V5N_1041/BA/2856:2861No text annotation
Not in a motif group
homologous
HL_7RQB_069
HL_42097.1
HL_4V5N_1051/BB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V5N_1061/BB/85:92No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_4V5N_002No text annotation
HL_4V5N_009No text annotation
HL_4V5N_039No text annotation
HL_4V5N_051No text annotation
HL_4V5N_063No text annotation
HL_4V5N_064No text annotation
HL_4V5N_073Other HL
HL_4V5N_102No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V5N_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.2
IL_4V5N_0021/AA/44:45,
1/AA/396:398
Single bulged A
Not in a motif group
homologous
IL_4LFB_002
IL_37497.2
IL_4V5N_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_4V5N_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
homologous
IL_5J7L_004
IL_93353.1
IL_4V5N_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4V5N_0061/AA/67:69,
1/AA/100:102
No text annotation
Not in a motif group
homologous
IL_4LFB_006
IL_95997.1
IL_4V5N_0071/AA/128:131,
1/AA/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_4V5N_0081/AA/132:136,
1/AA/227:230
No text annotation
Not in a motif group
homologous
IL_4LFB_008
IL_58764.3
IL_4V5N_0091/AA/148:153,
1/AA/168:174
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_4LFB_009
IL_39753.1
IL_4V5N_0101/AA/186:188,
1/AA/189L:191
No text annotation
Not in a motif group
homologous
IL_4LFB_010
IL_95997.1
IL_4V5N_0111/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_4LFB_011
IL_45067.2
IL_4V5N_0121/AA/249:253,
1/AA/273:275
No text annotation
Not in a motif group
homologous
IL_6CZR_124
IL_38684.1
IL_4V5N_0131/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_4LFB_013
IL_37712.2
IL_4V5N_0141/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.13
IL_4V5N_0151/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_4V5N_0161/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.2
IL_4V5N_0171/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V5N_0181/AA/446:450,
1/AA/483:488
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4LFB_018
IL_88269.3
IL_4V5N_0191/AA/450:455,
1/AA/476:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_4V5N_0201/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_4LFB_020
IL_15861.7
IL_4V5N_0211/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V5N_0221/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V5N_0231/AA/579:584,
1/AA/757:762
tSH-tHW-tHS-cWW
Not in a motif group
geometric
IL_3LQX_002
IL_76308.4
IL_4V5N_0241/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_4LFB_024
IL_27635.1
IL_4V5N_0251/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_4V5N_0261/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_4LFB_026
IL_78349.1
IL_4V5N_0271/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_4V5N_0281/AA/657:658,
1/AA/747:749
Major groove platform
Not in a motif group
homologous
IL_4LFB_028
IL_27635.1
IL_4V5N_0291/AA/662:666,
1/AA/740:743
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_4LFB_029
IL_71110.1
IL_4V5N_0301/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
homologous
IL_4LFB_030
IL_04668.1
IL_4V5N_0311/AA/683:688,
1/AA/699:707
Kink-turn
Not in a motif group
homologous
IL_4LFB_031
IL_37722.1
IL_4V5N_0321/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_4LFB_032
IL_29346.1
IL_4V5N_0331/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_4LFB_033
IL_17136.1
IL_4V5N_0341/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V5N_0351/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.2
IL_4V5N_0361/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.2
IL_4V5N_0371/AA/933:936,
1/AA/1379:1384
No text annotation
Not in a motif group
geometric
IL_6CZR_149
IL_93211.1
IL_4V5N_0381/AA/952:954,
1/AA/1226:1229
Minor groove platform with extra cWW
Not in a motif group
geometric
IL_4WF9_003
IL_65006.1
IL_4V5N_0391/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_4V5N_0401/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.13
IL_4V5N_0411/AA/1052:1056,
1/AA/1204:1206
Isolated cWS basepair
Not in a motif group
homologous
IL_4LFB_044
IL_76319.2
IL_4V5N_0421/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_4LFB_045
IL_93353.1
IL_4V5N_0431/AA/1060:1061,
1/AA/1195:1197
Single bulged U
Not in a motif group
geometric
IL_4LFB_046
IL_83039.13
IL_4V5N_0441/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
geometric
IL_4LFB_047
IL_95997.1
IL_4V5N_0451/AA/1124:1127,
1/AA/1145:1149
Minor groove platform
Not in a motif group
homologous
IL_6CZR_158
IL_58103.6
IL_4V5N_0461/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_4LFB_051
IL_09129.1
IL_4V5N_0471/AA/1255:1259,
1/AA/1276:1282
No text annotation
Not in a motif group
IL_4V5N_0481/AA/1259:1262,
1/AA/1273:1276
Double sheared
Not in a motif group
geometric
IL_5J7L_256
IL_09705.9
IL_4V5N_0491/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
geometric
IL_4LFB_055
IL_19954.2
IL_4V5N_0501/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4V5N_0511/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V5N_0521/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_007
IL_95997.1
IL_4V5N_0531/AA/1407:1409,
1/AA/1491:1494
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_4V5N_0541/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_5J7L_061
IL_95997.1
IL_4V5N_0551/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.9
IL_4V5N_0561/AA/1431:1435,
1/AA/1466:1469
UAA/GAN variation
Not in a motif group
geometric
IL_4LFB_062
IL_07235.1
IL_4V5N_0571/AA/1435:1437,
1/AA/1464:1466
No text annotation
Not in a motif group
homologous
IL_4LFB_063
IL_95997.1
IL_4V5N_0581/AA/1440:1443,
1/AA/1459:1461
No text annotation
Not in a motif group
homologous
IL_4LFB_064
IL_92788.2
IL_4V5N_0591/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_4V5N_0601/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.2
IL_4V5N_0611/BA/42:44,
1/BA/433:436
Major groove platform with extra cWW
Not in a motif group
geometric
IL_4V9F_003
IL_18471.2
IL_4V5N_0621/BA/81:85,
1/BA/97:105
Kink-turn
Not in a motif group
homologous
IL_7RQB_004
IL_45067.2
IL_4V5N_0631/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_7A0S_005
IL_76488.2
IL_4V5N_0641/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_4V5N_0651/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V5N_0661/BA/272D:272F,
1/BA/363D:364
No text annotation
Not in a motif group
geometric
IL_4V9F_072
IL_63450.2
IL_4V5N_0681/BA/280:285,
1/BA/356:360
Triple sheared
Not in a motif group
geometric
IL_5J7L_274
IL_56467.8
IL_4V5N_0691/BA/288:290,
1/BA/350:353
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_012
IL_38958.7
IL_4V5N_0701/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_7RQB_013
IL_69440.1
IL_4V5N_0711/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_4V5N_0721/BA/564:566,
1/BA/575:577
No text annotation
Not in a motif group
geometric
IL_4WF9_017
IL_95997.1
IL_4V5N_0731/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_4WF9_019
IL_17136.1
IL_4V5N_0741/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_95997.1
IL_4V5N_0751/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_4WF9_021
IL_17470.6
IL_4V5N_0761/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.2
IL_4V5N_0771/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_00225.2
IL_4V5N_0781/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
homologous
IL_7RQB_021
IL_56467.8
IL_4V5N_0791/BA/738:741,
1/BA/756:758
Major groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_022
IL_05564.2
IL_4V5N_0801/BA/775:777,
1/BA/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_4WF9_027
IL_90991.6
IL_4V5N_0811/BA/837:838,
1/BA/940:942
Single stack bend
Not in a motif group
homologous
IL_4WF9_028
IL_92001.1
IL_4V5N_0821/BA/844:846,
1/BA/931:934
Intercalated cWW
Not in a motif group
homologous
IL_7RQB_025
IL_52767.2
IL_4V5N_0831/BA/846:850,
1/BA/927:931
No text annotation
Not in a motif group
geometric
IL_7RQB_026
IL_94165.1
IL_4V5N_0841/BA/858:862,
1/BA/915:919
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
homologous
IL_7RQB_027
IL_38862.1
IL_4V5N_0851/BA/862:863,
1/BA/913:915
Minor groove platform
Not in a motif group
geometric
IL_4V9F_034
IL_42622.2
IL_4V5N_0861/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_7RQB_029
IL_02509.1
IL_4V5N_0871/BA/870:872,
1/BA/905:907
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_030
IL_52767.2
IL_4V5N_0881/BA/875:879,
1/BA/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_4V5N_0891/BA/880:883,
1/BA/893:897
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1D4R_003
IL_30621.2
IL_4V5N_0901/BA/952:954,
1/BA/963:965
No text annotation
Not in a motif group
homologous
IL_7RQB_034
IL_95997.1
IL_4V5N_0911/BA/994:996,
1/BA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_4V5N_0921/BA/998:1002,
1/BA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_89002.2
IL_4V5N_0931/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_4V5N_0941/BA/1011:1013,
1/BA/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.13
IL_4V5N_0951/BA/1018:1024,
1/BA/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_4V5N_0961/BA/1024:1030,
1/BA/1124:1140
No text annotation
Not in a motif group
geometric
IL_7RQB_040
IL_50715.1
IL_4V5N_0971/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_4V5N_0981/BA/1043:1054,
1/BA/1105:1112
No text annotation
Not in a motif group
IL_4V5N_1011/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7RQB_045
IL_52767.2
IL_4V5N_1021/BA/1202:1206,
1/BA/1240:1243
No text annotation
Not in a motif group
homologous
IL_7RQB_046
IL_68574.2
IL_4V5N_1031/BA/1208:1215,
1/BA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_70923.2
IL_4V5N_1041/BA/1219:1221,
1/BA/1229:1230
Single bulged A
Not in a motif group
homologous
IL_7RQB_048
IL_37497.2
IL_4V5N_1051/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_4V5N_1061/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_050
IL_50694.2
IL_4V5N_1071/BA/1319:1323,
1/BA/1331:1333
C-loop
Not in a motif group
homologous
IL_7RQB_051
IL_63596.6
IL_4V5N_1081/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7RQB_052
IL_89002.2
IL_4V5N_1091/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_7RQB_053
IL_17136.1
IL_4V5N_1101/BA/1415:1416,
1/BA/1582:1587
No text annotation
Not in a motif group
homologous
IL_7RQB_054
IL_67474.4
IL_4V5N_1111/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V5N_1121/BA/1433:1435,
1/BA/1557:1560
Isolated tWW turn
Not in a motif group
homologous
IL_7RQB_056
IL_54997.7
IL_4V5N_1131/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7RQB_057
IL_04059.1
IL_4V5N_1141/BA/1448:1450,
1/BA/1462:1463
Single stack bend
Not in a motif group
homologous
IL_7RQB_058
IL_76488.2
IL_4V5N_1151/BA/1469:1473,
1/BA/1518:1523
UAA/GAN
Not in a motif group
homologous
IL_7RQB_060
IL_07235.1
IL_4V5N_1161/BA/1481:1482,
1/BA/1506:1510
No text annotation
Not in a motif group
homologous
IL_7RQB_061
IL_52493.1
IL_4V5N_1171/BA/1489:1491,
1/BA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.2
IL_4V5N_1181/BA/1526:1529,
1/BA/1540:1546
No text annotation
Not in a motif group
homologous
IL_7RQB_063
IL_02656.1
IL_4V5N_1191/BA/1651:1656,
1/BA/2004:2006
No text annotation
Not in a motif group
homologous
IL_4WF9_062
IL_12566.2
IL_4V5N_1201/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_5J7L_305
IL_54997.7
IL_4V5N_1211/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4WF9_064
IL_50694.2
IL_4V5N_1221/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_7A0S_062
IL_82842.2
IL_4V5N_1231/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_7RQB_068
IL_65969.2
IL_4V5N_1241/BA/1770:1771,
1/BA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_7RQB_069
IL_37497.2
IL_4V5N_1251/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_4V5N_1261/BA/1837:1840,
1/BA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.1
IL_4V5N_1271/BA/1841:1842,
1/BA/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_4WF9_071
IL_69996.1
IL_4V5N_1281/BA/1846:1849,
1/BA/1893:1894
Minor groove platform
Not in a motif group
homologous
IL_7RQB_073
IL_88739.1
IL_4V5N_1291/BA/1851:1855,
1/BA/1887:1891
UAA/GAN with extra pair
Not in a motif group
homologous
IL_7RQB_074
IL_90318.1
IL_4V5N_1301/BA/1856:1860,
1/BA/1882:1886
Triple sheared
Not in a motif group
homologous
IL_7RQB_075
IL_56467.8
IL_4V5N_1311/BA/1933:1934,
1/BA/1964:1967
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_076
IL_59677.2
IL_4V5N_1321/BA/1934:1945,
1/BA/1961:1964
No text annotation
Not in a motif group
geometric
IL_4WF9_077
IL_81589.2
IL_4V5N_1331/BA/2050:2052,
1/BA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.1
IL_4V5N_1341/BA/2054:2057,
1/BA/2611:2615
No text annotation
Not in a motif group
IL_4V5N_1351/BA/2067:2069,
1/BA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.13
IL_4V5N_1361/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_4V5N_1371/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_082
IL_38958.7
IL_4V5N_1381/BA/2085:2087,
1/BA/2232:2234
No text annotation
Not in a motif group
homologous
IL_5J7L_326
IL_95997.1
IL_4V5N_1391/BA/2107:2110,
1/BA/2179:2182
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1D4R_001
IL_30621.2
IL_4V5N_1401/BA/2110:2120,
1/BA/2178:2179
No text annotation
Not in a motif group
geometric
IL_3U4M_002
IL_45944.3
IL_4V5N_1411/BA/2124:2127,
1/BA/2161:2174
No text annotation
Not in a motif group
homologous
IL_3U4M_003
IL_75283.2
IL_4V5N_1421/BA/2129:2137,
1/BA/2154:2159
Kink-turn
Not in a motif group
geometric
IL_4LFB_031
IL_37722.1
IL_4V5N_1431/BA/2297:2299,
1/BA/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_7RQB_088
IL_38958.7
IL_4V5N_1441/BA/2350:2353,
1/BA/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_4V5N_1451/BA/2401:2403,
1/BA/2414:2415
Major groove platform
Not in a motif group
homologous
IL_7A0S_082
IL_27635.1
IL_4V5N_1461/BA/2453:2454,
1/BA/2498:2500
Single stack bend
Not in a motif group
geometric
IL_7RQB_091
IL_76488.2
IL_4V5N_1471/BA/2454:2455,
1/BA/2496:2498
Major groove platform
Not in a motif group
homologous
IL_4WF9_090
IL_27635.1
IL_4V5N_1481/BA/2457:2459,
1/BA/2493:2494
Major groove platform
Not in a motif group
geometric
IL_4WF9_091
IL_27635.1
IL_4V5N_1491/BA/2459:2461,
1/BA/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_7RQB_094
IL_92788.2
IL_4V5N_1501/BA/2466:2470,
1/BA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_7RQB_095
IL_56467.8
IL_4V5N_1511/BA/2507:2508,
1/BA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7RQB_096
IL_76223.2
IL_4V5N_1521/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_4V5N_1531/BA/2512:2513,
1/BA/2571:2574
Multiple bulged bases
Not in a motif group
geometric
IL_7RQB_098
IL_71530.2
IL_4V5N_1541/BA/2522:2523,
1/BA/2540:2543
Minor groove platform with intercalation
Not in a motif group
homologous
IL_7RQB_099
IL_95601.3
IL_4V5N_1551/BA/2591:2592,
1/BA/2601:2603
Single bulged A
Not in a motif group
homologous
IL_7RQB_101
IL_37497.2
IL_4V5N_1561/BA/2636:2640,
1/BA/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_4WF9_099
IL_04638.1
IL_4V5N_1571/BA/2652:2658,
1/BA/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7A0S_094
IL_16458.1
IL_4V5N_1581/BA/2680:2684,
1/BA/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.6
IL_4V5N_1591/BA/2687:2691,
1/BA/2718:2722
No text annotation
Not in a motif group
homologous
IL_7RQB_105
IL_08296.3
IL_4V5N_1601/BA/2695:2696,
1/BA/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_106
IL_71530.2
IL_4V5N_1611/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_7RQB_107
IL_49767.5
IL_4V5N_1621/BA/2838:2839,
1/BA/2878:2880
Single bulged C
Not in a motif group
homologous
IL_7RQB_108
IL_61258.12
IL_4V5N_1631/BA/2843:2846,
1/BA/2870:2874
No text annotation
Not in a motif group
homologous
IL_7RQB_109
IL_58764.3
IL_4V5N_1641/BA/2847:2852,
1/BA/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.5
IL_4V5N_1651/BB/17:18,
1/BB/65:67
Major groove intercalation
Not in a motif group
homologous
IL_4V9F_101
IL_37497.2
IL_4V5N_1661/BB/20:23,
1/BB/60:63
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4WF9_109
IL_30621.2
IL_4V5N_1671/BB/23:28,
1/BB/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_4V5N_1681/BB/29:31,
1/BB/51:55
No text annotation
Not in a motif group
IL_4V5N_1691/BB/34:38,
1/BB/44:48
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_4V5N_1701/BB/71:79,
1/BB/98:106
No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_4V5N_067No text annotation
IL_4V5N_099No text annotation
IL_4V5N_100Major groove platform with extra cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V5N_0011/AA/46:47,
1/AA/361:367,
1/AA/393:395
No text annotation
Not in a motif group
J3_4V5N_0021/AA/586:588,
1/AA/651:654,
1/AA/754:755
No text annotation
Not in a motif group
J3_4V5N_0031/AA/672:673,
1/AA/717:725,
1/AA/732:734
No text annotation
Not in a motif group
J3_4V5N_0041/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
Not in a motif group
homologous
J3_4LFB_001
NA
J3_4V5N_0051/AA/936:939,
1/AA/1344:1350,
1/AA/1372:1379
No text annotation
Not in a motif group
homologous
J3_4LFB_002
NA
J3_4V5N_0061/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
Not in a motif group
J3_4V5N_0071/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
Not in a motif group
J3_4V5N_0081/AA/990:993,
1/AA/1045:1047,
1/AA/1210:1215
No text annotation
Not in a motif group
homologous
J3_4LFB_005
NA
J3_4V5N_0091/AA/1063:1068,
1/AA/1107:1113,
1/AA/1187:1193
No text annotation
Not in a motif group
J3_4V5N_0101/AA/1073:1074,
1/AA/1083:1087,
1/AA/1098:1102
No text annotation
Not in a motif group
homologous
J3_5J7L_009
NA
J3_4V5N_0111/AA/1116:1118,
1/AA/1155:1161,
1/AA/1175:1184
No text annotation
Not in a motif group
J3_4V5N_0121/AA/1237:1241,
1/AA/1296:1303,
1/AA/1334:1337
No text annotation
Not in a motif group
homologous
J3_4LFB_009
NA
J3_4V5N_0131/BA/30:31,
1/BA/474:481,
1/BA/509:510
No text annotation
Not in a motif group
homologous
J3_7RQB_001
NA