RNA 3D Hub //

6N8N Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6N8N_0011/A/38:45No text annotation
Not in a motif group		geometric
HL_4WF9_006
HL_06192.2
HL_6N8N_0021/A/69:74No text annotation
Not in a motif group		homologous
HL_5TBW_002
HL_02862.2
HL_6N8N_0031/A/90:96No text annotation
Not in a motif group		homologous
HL_5TBW_003
HL_67216.7
HL_6N8N_0041/A/132:136No text annotation
Not in a motif group		homologous
HL_8C3A_004
HL_98426.1
HL_6N8N_0051/A/194:201T-loop with 1 bulged base
Not in a motif group		homologous
HL_5TBW_005
HL_89380.2
HL_6N8N_0061/A/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_6N8N_0071/A/216:224No text annotation
Not in a motif group		homologous
HL_5TBW_007
HL_08002.8
HL_6N8N_0081/A/278:287No text annotation
Not in a motif group		homologous
HL_8C3A_008
HL_71554.2
HL_6N8N_0101/A/357:362No text annotation
Not in a motif group		homologous
HL_8C3A_010
HL_42097.1
HL_6N8N_0111/A/382:387No text annotation
Not in a motif group		homologous
HL_8C3A_011
HL_42097.1
HL_6N8N_0121/A/540:551No text annotation
Not in a motif group
HL_6N8N_0131/A/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_6N8N_0141/A/639:650No text annotation
Not in a motif group		geometric
HL_4V88_219
HL_22554.1
HL_6N8N_0151/A/686:694No text annotation
Not in a motif group		homologous
HL_8C3A_015
HL_03345.1
HL_6N8N_0171/A/732:737GNRA
Not in a motif group		homologous
HL_5TBW_017
HL_42097.1
HL_6N8N_0221/A/958:963No text annotation
Not in a motif group		homologous
HL_5TBW_022
HL_94803.1
HL_6N8N_0261/A/1148:1155No text annotation
Not in a motif group		homologous
HL_5TBW_026
HL_64430.2
HL_6N8N_0291/A/1347:1357No text annotation
Not in a motif group		homologous
HL_5TBW_029
HL_89098.1
HL_6N8N_0301/A/1403:1408No text annotation
Not in a motif group		homologous
HL_8C3A_030
HL_42097.1
HL_6N8N_0651/A/3025:3030No text annotation
Not in a motif group		geometric
HL_3OXE_002
HL_42097.1
HL_6N8N_0661/A/3068:3073No text annotation
Not in a motif group		homologous
HL_8C3A_067
HL_46680.1
HL_6N8N_0671/A/3110:3124No text annotation
Not in a motif group		homologous
HL_8C3A_068
HL_56677.7
HL_6N8N_0681/A/3194:3197No text annotation
Not in a motif group		geometric
HL_5TBW_068
HL_98426.1
HL_6N8N_0701/A/3303:3311No text annotation
Not in a motif group		homologous
HL_5TBW_070
HL_27930.1
HL_6N8N_0721/B/36:41No text annotation
Not in a motif group		geometric
HL_5TBW_185
HL_87939.1
HL_6N8N_0731/B/88:93GNRA
Not in a motif group		homologous
HL_5TBW_186
HL_42097.1
HL_6N8N_0741/C/69:89No text annotation
Not in a motif group
HL_6N8N_0751/C/108:114No text annotation
Not in a motif group		homologous
HL_5TBW_075
HL_87939.1
HL_6N8N_0761/C/124:129No text annotation
Not in a motif group		homologous
HL_5TBW_076
HL_96851.2

Problematic loops

#loop idProblemSequence
HL_6N8N_009No text annotation
HL_6N8N_016GNRA
HL_6N8N_018No text annotation
HL_6N8N_019No text annotation
HL_6N8N_020No text annotation
HL_6N8N_021No text annotation
HL_6N8N_023No text annotation
HL_6N8N_024No text annotation
HL_6N8N_025No text annotation
HL_6N8N_027No text annotation
HL_6N8N_028No text annotation
HL_6N8N_031No text annotation
HL_6N8N_032No text annotation
HL_6N8N_033No text annotation
HL_6N8N_034No text annotation
HL_6N8N_035No text annotation
HL_6N8N_036No text annotation
HL_6N8N_037No text annotation
HL_6N8N_038No text annotation
HL_6N8N_039No text annotation
HL_6N8N_040No text annotation
HL_6N8N_041No text annotation
HL_6N8N_042GNRA with one bulged base
HL_6N8N_043No text annotation
HL_6N8N_044No text annotation
HL_6N8N_045No text annotation
HL_6N8N_046No text annotation
HL_6N8N_047Other HL
HL_6N8N_048No text annotation
HL_6N8N_049No text annotation
HL_6N8N_050No text annotation
HL_6N8N_051No text annotation
HL_6N8N_052No text annotation
HL_6N8N_053No text annotation
HL_6N8N_054No text annotation
HL_6N8N_055No text annotation
HL_6N8N_056No text annotation
HL_6N8N_057No text annotation
HL_6N8N_058No text annotation
HL_6N8N_059GNRA
HL_6N8N_060No text annotation
HL_6N8N_061No text annotation
HL_6N8N_062No text annotation
HL_6N8N_063No text annotation
HL_6N8N_064GNRA
HL_6N8N_069No text annotation
HL_6N8N_071Other HL

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6N8N_0011/A/3:4,
1/C/155:156		No text annotation
Not in a motif group
IL_6N8N_0021/A/7:8,
1/C/150:152		Single bulged C
Not in a motif group		homologous
IL_5TBW_002
IL_61258.12
IL_6N8N_0031/A/12:15,
1/C/144:146		No text annotation
Not in a motif group		geometric
IL_4V9F_105
IL_95997.1
IL_6N8N_0041/A/31:38,
1/A/45:53		tSH-tHW-tHH-tHS
Not in a motif group		homologous
IL_5TBW_005
IL_35728.2
IL_6N8N_0051/A/82:89,
1/A/97:103		No text annotation
Not in a motif group		homologous
IL_5TBW_006
IL_88613.1
IL_6N8N_0061/A/123:124,
1/A/144:149		No text annotation
Not in a motif group		homologous
IL_5TBW_007
IL_19724.2
IL_6N8N_0071/A/125:127,
1/A/141:143		No text annotation
Not in a motif group		homologous
IL_5TBW_008
IL_95997.1
IL_6N8N_0091/A/169:173,
1/A/245:253		No text annotation
Not in a motif group
IL_6N8N_0101/A/177:179,
1/A/237:241		Major groove platform with extra pair
Not in a motif group		homologous
IL_5TBW_011
IL_63450.2
IL_6N8N_0111/A/189:191,
1/A/204:205		No text annotation
Not in a motif group		homologous
IL_8C3A_013
IL_83039.13
IL_6N8N_0121/A/337:339,
1/C/25:26		No text annotation
Not in a motif group		homologous
IL_8C3A_014
IL_37497.2
IL_6N8N_0131/A/376:379,
1/A/390:403		No text annotation
Not in a motif group		homologous
IL_8C3A_015
IL_60992.6
IL_6N8N_0141/A/404:410,
1/C/13:19		Triple sheared with non-canonical cWW
Not in a motif group		geometric
IL_5TBW_015
IL_66414.6
IL_6N8N_0151/A/429:431,
1/A/628:630		No text annotation
Not in a motif group		homologous
IL_5TBW_016
IL_51629.2
IL_6N8N_0171/A/512:513,
1/A/577:579		No text annotation
Not in a motif group		homologous
IL_8C3A_020
IL_37497.2
IL_6N8N_0181/A/517:525,
1/A/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_6N8N_0191/A/531:538,
1/A/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_6N8N_0201/A/668:670,
1/A/792:794		No text annotation
Not in a motif group		homologous
IL_5TBW_021
IL_95997.1
IL_6N8N_0211/A/680:684,
1/A/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_6N8N_0221/A/725:728,
1/A/741:745		UAA/GAN
Not in a motif group		homologous
IL_5TBW_023
IL_07235.1
IL_6N8N_0231/A/752:753,
1/A/779:781		Single bulged A
Not in a motif group		homologous
IL_5TBW_024
IL_37497.2
IL_6N8N_0241/A/755:756,
1/A/775:777		No text annotation
Not in a motif group		homologous
IL_8C3A_027
IL_83039.13
IL_6N8N_0261/A/803:805,
1/A/938:940		No text annotation
Not in a motif group		geometric
IL_7A0S_014
IL_95997.1
IL_6N8N_0271/A/805:809,
1/A/931:938		No text annotation
Not in a motif group		homologous
IL_5TBW_028
IL_17470.6
IL_6N8N_0321/A/954:956,
1/A/965:967		No text annotation
Not in a motif group		homologous
IL_8C3A_037
IL_95997.1
IL_6N8N_0331/A/969:970,
1/A/1111:1113		Single stack bend
Not in a motif group		homologous
IL_5TBW_035
IL_76488.2
IL_6N8N_0341/A/977:981,
1/A/1102:1104		No text annotation
Not in a motif group
IL_6N8N_0351/A/983:985,
1/A/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.2
IL_6N8N_0401/A/1120:1122,
1/A/1136:1138		No text annotation
Not in a motif group		homologous
IL_5TBW_046
IL_95997.1
IL_6N8N_0411/A/1167:1171,
1/A/1328:1332		UAA/GAN
Not in a motif group		homologous
IL_5TBW_048
IL_89002.2
IL_6N8N_0421/A/1173:1180,
1/A/1325:1326		No text annotation
Not in a motif group		geometric
IL_6CZR_134
IL_69996.1
IL_6N8N_0431/A/1180:1182,
1/A/1324:1325		Single bulged U
Not in a motif group		homologous
IL_5TBW_050
IL_83039.13
IL_6N8N_0451/A/1207:1209,
1/A/1296:1297		No text annotation
Not in a motif group		homologous
IL_8C3A_056
IL_83039.13
IL_6N8N_0491/A/1376:1378,
1/A/1428:1431		Isolated cWS basepair
Not in a motif group		homologous
IL_5TBW_057
IL_52767.2
IL_6N8N_0511/A/1388:1395,
1/A/1415:1419		Kink-turn
Not in a motif group		homologous
IL_5TBW_059
IL_70923.2
IL_6N8N_0531/A/1443:1450,
1/A/2354:2360		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		geometric
IL_1JBR_001
IL_04346.7
IL_6N8N_1061/A/3004:3007,
1/A/3139:3144		Double sheared
Not in a motif group		homologous
IL_5TBW_114
IL_09705.9
IL_6N8N_1071/A/3012:3014,
1/A/3040:3042		No text annotation
Not in a motif group		homologous
IL_5TBW_115
IL_95997.1
IL_6N8N_1081/A/3018:3025,
1/A/3030:3036		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_116
IL_04346.7
IL_6N8N_1091/A/3046:3051,
1/A/3091:3095		No text annotation
Not in a motif group
IL_6N8N_1101/A/3054:3059,
1/A/3084:3088		UAA/GAN related
Not in a motif group		homologous
IL_5TBW_118
IL_17136.1
IL_6N8N_1121/A/3102:3107,
1/A/3127:3132		UAA/GAN with extra cWW
Not in a motif group		geometric
IL_7RQB_107
IL_49767.5
IL_6N8N_1131/A/3163:3166,
1/A/3284:3287		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_3WBM_003
IL_30621.2
IL_6N8N_1151/A/3177:3179,
1/A/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_37497.2
IL_6N8N_1161/A/3179:3188,
1/A/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_15174.1
IL_6N8N_1171/A/3193:3194,
1/A/3197:3199		Single bulged U
Not in a motif group		homologous
IL_5TBW_125
IL_83039.13
IL_6N8N_1211/A/3300:3303,
1/A/3311:3314		Tandem non-canonical cWW pairs
Not in a motif group		geometric
IL_5TBW_129
IL_30621.2
IL_6N8N_1221/A/3318:3321,
1/A/3386:3388		Isolated cWH basepair
Not in a motif group		geometric
IL_5F5F_001
IL_51629.2
IL_6N8N_1231/A/3324:3325,
1/A/3381:3383		Single bulged U
Not in a motif group		homologous
IL_5TBW_131
IL_83039.13
IL_6N8N_1251/A/3332:3337,
1/A/3367:3371		No text annotation
Not in a motif group		homologous
IL_5TBW_133
IL_83162.5
IL_6N8N_1281/B/15:16,
1/B/63:65		Single bulged A
Not in a motif group		homologous
IL_5TBW_372
IL_37497.2
IL_6N8N_1291/B/21:27,
1/B/53:58		No text annotation
Not in a motif group		geometric
IL_5TBW_373
IL_10207.2
IL_6N8N_1301/B/27:29,
1/B/49:53		No text annotation
Not in a motif group
IL_6N8N_1311/B/29:30,
1/B/47:49		Single stack bend
Not in a motif group		homologous
IL_5TBW_375
IL_76488.2
IL_6N8N_1321/B/32:36,
1/B/41:45		Symmetric double minor groove platform
Not in a motif group		homologous
IL_5TBW_376
IL_58103.6
IL_6N8N_1331/B/72:80,
1/B/100:106		8x7 Sarcin-Ricin; G-bulge
Not in a motif group		homologous
IL_5TBW_377
IL_04346.7
IL_6N8N_1341/B/84:87,
1/B/94:96		No text annotation
Not in a motif group		homologous
IL_5TBW_378
IL_95997.1
IL_6N8N_1351/C/43:64,
1/C/96:101		No text annotation
Not in a motif group
IL_6N8N_1361/C/64:67,
1/C/92:96		No text annotation
Not in a motif group
IL_6N8N_1371/C/68:69,
1/C/89:91		Single bulged U
Not in a motif group		homologous
IL_5TBW_146
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_6N8N_008Other IL
IL_6N8N_016No text annotation
IL_6N8N_025No text annotation
IL_6N8N_028No text annotation
IL_6N8N_029No text annotation
IL_6N8N_030Single bulged U
IL_6N8N_031No text annotation
IL_6N8N_0367x7 Sarcin-Ricin with intercalated A; G-bulge
IL_6N8N_037No text annotation
IL_6N8N_038Tandem non-canonical cWW pairs
IL_6N8N_039Single bulged A
IL_6N8N_044No text annotation
IL_6N8N_046No text annotation
IL_6N8N_047No text annotation
IL_6N8N_048Major groove platform with extra cWW
IL_6N8N_050Single bulged A
IL_6N8N_052Single bulged A
IL_6N8N_054No text annotation
IL_6N8N_055UAA/GAN
IL_6N8N_056No text annotation
IL_6N8N_057Multiple bulged bases
IL_6N8N_058No text annotation
IL_6N8N_059No text annotation
IL_6N8N_060Single bulged C
IL_6N8N_061Single stack bend
IL_6N8N_062No text annotation
IL_6N8N_063No text annotation
IL_6N8N_064Kink-turn
IL_6N8N_065No text annotation
IL_6N8N_066No text annotation
IL_6N8N_067No text annotation
IL_6N8N_068Intercalated tWH
IL_6N8N_069tSH-tSH-tHH-tHS
IL_6N8N_070No text annotation
IL_6N8N_071No text annotation
IL_6N8N_072Single stack bend
IL_6N8N_073No text annotation
IL_6N8N_074Kink-turn related
IL_6N8N_075No text annotation
IL_6N8N_076No text annotation
IL_6N8N_077Single bulged U
IL_6N8N_078Major groove platform with extra pair
IL_6N8N_079No text annotation
IL_6N8N_080No text annotation
IL_6N8N_081No text annotation
IL_6N8N_082No text annotation
IL_6N8N_083Minor groove platform with intercalation
IL_6N8N_084No text annotation
IL_6N8N_085No text annotation
IL_6N8N_086No text annotation
IL_6N8N_087No text annotation
IL_6N8N_088No text annotation
IL_6N8N_089No text annotation
IL_6N8N_090No text annotation
IL_6N8N_091Single bulged A
IL_6N8N_092Isolated tHS basepair with bulges
IL_6N8N_093No text annotation
IL_6N8N_094No text annotation
IL_6N8N_095Major groove platform
IL_6N8N_096No text annotation
IL_6N8N_097Major groove platform
IL_6N8N_098Major groove minor groove platform with extra cWW
IL_6N8N_099Triple sheared
IL_6N8N_100Major groove platform
IL_6N8N_101Isolated non-canonical cWW with bulges
IL_6N8N_102Multiple bulged bases
IL_6N8N_103No text annotation
IL_6N8N_104Minor groove platform with intercalation
IL_6N8N_105No text annotation
IL_6N8N_111Multiple bulged bases
IL_6N8N_114Tandem non-canonical cWW pairs
IL_6N8N_118No text annotation
IL_6N8N_119No text annotation
IL_6N8N_120Tandem non-canonical cWW pairs
IL_6N8N_124No text annotation
IL_6N8N_126No text annotation
IL_6N8N_127No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6N8N_0011/A/369:376,
1/A/403:404,
1/C/19:20		No text annotation
Not in a motif group		homologous
J3_5TBW_002
NA
J3_6N8N_0021/A/501:503,
1/A/588:597,
1/A/606:612		No text annotation
Not in a motif group
J3_6N8N_0051/A/986:987,
1/A/1062:1066,
1/A/1092:1098		No text annotation
Not in a motif group		homologous
J3_5TBW_006
NA
J3_6N8N_0141/A/3298:3300,
1/A/3314:3318,
1/A/3388:3390		No text annotation
Not in a motif group		homologous
J3_5TBW_015
NA
J3_6N8N_0151/B/9:14,
1/B/66:67,
1/B/111:112		No text annotation
Not in a motif group		homologous
J3_5TBW_045
NA

Problematic loops

#loop idProblemSequence
J3_6N8N_003No text annotation
J3_6N8N_004No text annotation
J3_6N8N_006No text annotation
J3_6N8N_007No text annotation
J3_6N8N_008No text annotation
J3_6N8N_009No text annotation
J3_6N8N_010No text annotation
J3_6N8N_011No text annotation
J3_6N8N_012No text annotation
J3_6N8N_013No text annotation

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