6OF1 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6OF1_001 | 1/1A/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_6OF1_002 | 1/1A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_17926.5 | |
| HL_6OF1_003 | 1/1A/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_62869.3 | |
| HL_6OF1_004 | 1/1A/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_86069.1 | |
| HL_6OF1_006 | 1/1A/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 HL_23481.5 | |
| HL_6OF1_007 | 1/1A/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_06569.2 | |
| HL_6OF1_008 | 1/1A/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_6OF1_009 | 1/1A/271J:271M | No text annotation Not in a motif group | geometric HL_7RQB_009 HL_69353.7 | |
| HL_6OF1_010 | 1/1A/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_68493.6 | |
| HL_6OF1_011 | 1/1A/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_98557.5 | |
| HL_6OF1_012 | 1/1A/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_6OF1_013 | 1/1A/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.3 | |
| HL_6OF1_014 | 1/1A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_6OF1_015 | 1/1A/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_43074.18 | |
| HL_6OF1_016 | 1/1A/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_43074.18 | |
| HL_6OF1_018 | 1/1A/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_33239.17 | |
| HL_6OF1_019 | 1/1A/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_49196.4 | |
| HL_6OF1_020 | 1/1A/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_43074.18 | |
| HL_6OF1_021 | 1/1A/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_02361.6 | |
| HL_6OF1_022 | 1/1A/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_93727.5 | |
| HL_6OF1_023 | 1/1A/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.5 | |
| HL_6OF1_024 | 1/1A/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_16898.3 | |
| HL_6OF1_025 | 1/1A/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_15942.5 | |
| HL_6OF1_026 | 1/1A/882:894 | No text annotation Not in a motif group | ||
| HL_6OF1_027 | 1/1A/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_43074.18 | |
| HL_6OF1_028 | 1/1A/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_72451.5 | |
| HL_6OF1_031 | 1/1A/1171:1178 | No text annotation Not in a motif group | homologous HL_7RQB_031 HL_01253.1 | |
| HL_6OF1_032 | 1/1A/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_43074.18 | |
| HL_6OF1_033 | 1/1A/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_33239.17 | |
| HL_6OF1_034 | 1/1A/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_86880.5 | |
| HL_6OF1_035 | 1/1A/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_43074.18 | |
| HL_6OF1_036 | 1/1A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_78457.4 | |
| HL_6OF1_037 | 1/1A/1451:1459 | No text annotation Not in a motif group | geometric HL_7RQB_037 HL_71540.1 | |
| HL_6OF1_038 | 1/1A/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_86880.5 | |
| HL_6OF1_039 | 1/1A/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_69353.7 | |
| HL_6OF1_040 | 1/1A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_6OF1_041 | 1/1A/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_86880.5 | |
| HL_6OF1_042 | 1/1A/1691:1696 | No text annotation Not in a motif group | geometric HL_7RQB_042 HL_79299.11 | |
| HL_6OF1_043 | 1/1A/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_49638.1 | |
| HL_6OF1_044 | 1/1A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_6OF1_045 | 1/1A/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.4 | |
| HL_6OF1_046 | 1/1A/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_43074.18 | |
| HL_6OF1_047 | 1/1A/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_43074.18 | |
| HL_6OF1_048 | 1/1A/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_6OF1_049 | 1/1A/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_6OF1_050 | 1/1A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_6OF1_052 | 1/1A/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_82131.1 | |
| HL_6OF1_053 | 1/1A/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6OF1_054 | 1/1A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_6OF1_055 | 1/1A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6OF1_056 | 1/1A/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_46142.8 | |
| HL_6OF1_057 | 1/1A/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_93727.5 | |
| HL_6OF1_058 | 1/1A/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_6OF1_059 | 1/1A/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_48376.4 | |
| HL_6OF1_060 | 1/1A/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_36421.5 | |
| HL_6OF1_061 | 1/1A/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_92681.5 | |
| HL_6OF1_062 | 1/1A/2551:2557 | No text annotation Not in a motif group | homologous HL_7RQB_062 NA | |
| HL_6OF1_063 | 1/1A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_6OF1_064 | 1/1A/2658:2663 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_43074.18 | |
| HL_6OF1_065 | 1/1A/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_31583.1 | |
| HL_6OF1_066 | 1/1A/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.5 | |
| HL_6OF1_068 | 1/1A/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_05018.6 | |
| HL_6OF1_069 | 1/1A/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_43074.18 | |
| HL_6OF1_070 | 1/1B/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_02733.5 | |
| HL_6OF1_071 | 1/1B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_43074.18 | |
| HL_6OF1_072 | 1/1a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_67265.4 | |
| HL_6OF1_074 | 1/1a/157:164 | No text annotation Not in a motif group | ||
| HL_6OF1_075 | 1/1a/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_44730.2 | |
| HL_6OF1_076 | 1/1a/201:216 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_69353.7 | |
| HL_6OF1_077 | 1/1a/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_6OF1_078 | 1/1a/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_6OF1_079 | 1/1a/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6OF1_081 | 1/1a/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_6OF1_082 | 1/1a/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_79299.11 | |
| HL_6OF1_083 | 1/1a/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_68304.6 | |
| HL_6OF1_084 | 1/1a/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
| HL_6OF1_085 | 1/1a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26055.6 | |
| HL_6OF1_086 | 1/1a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_87219.4 | |
| HL_6OF1_087 | 1/1a/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_43074.18 | |
| HL_6OF1_088 | 1/1a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_87219.4 | |
| HL_6OF1_089 | 1/1a/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_18722.3 | |
| HL_6OF1_090 | 1/1a/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_6OF1_091 | 1/1a/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_43074.18 | |
| HL_6OF1_092 | 1/1a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6OF1_093 | 1/1a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_6OF1_095 | 1/1a/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_43074.18 | |
| HL_6OF1_096 | 1/1a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_6OF1_097 | 1/1a/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_6OF1_098 | 1/1a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_43074.18 | |
| HL_6OF1_099 | 1/1a/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_43074.18 | |
| HL_6OF1_100 | 1/1a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_6OF1_101 | 1/1a/1356:1366 | No text annotation Not in a motif group | ||
| HL_6OF1_102 | 1/1a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_16568.1 | |
| HL_6OF1_103 | 1/1a/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA | |
| HL_6OF1_105 | 1/1w/31:39 | No text annotation Not in a motif group | ||
| HL_6OF1_106 | 1/1w/53:61 | No text annotation Not in a motif group | homologous HL_1H4S_003 NA | |
| HL_6OF1_107 | 1/1x/13:22 | No text annotation Not in a motif group | homologous HL_6CFJ_106 HL_51876.1 | |
| HL_6OF1_108 | 1/1x/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_6OF1_109 | 1/1x/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_6OF1_111 | 1/1y/31:39 | No text annotation Not in a motif group | ||
| HL_6OF1_112 | 1/1y/53:61 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_98557.5 | |
| HL_6OF1_113 | 1/2A/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_29414.1 | |
| HL_6OF1_114 | 1/2A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_17926.5 | |
| HL_6OF1_115 | 1/2A/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_62869.3 | |
| HL_6OF1_116 | 1/2A/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_86069.1 | |
| HL_6OF1_118 | 1/2A/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_23481.5 | |
| HL_6OF1_119 | 1/2A/225:230 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_06569.2 | |
| HL_6OF1_120 | 1/2A/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.5 | |
| HL_6OF1_121 | 1/2A/271I:271O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_93229.1 | |
| HL_6OF1_122 | 1/2A/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_68493.6 | |
| HL_6OF1_123 | 1/2A/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_98557.5 | |
| HL_6OF1_124 | 1/2A/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.6 | |
| HL_6OF1_125 | 1/2A/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.3 | |
| HL_6OF1_126 | 1/2A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_32512.8 | |
| HL_6OF1_127 | 1/2A/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_43074.18 | |
| HL_6OF1_128 | 1/2A/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_43074.18 | |
| HL_6OF1_130 | 1/2A/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_33239.17 | |
| HL_6OF1_131 | 1/2A/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_49196.4 | |
| HL_6OF1_132 | 1/2A/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_43074.18 | |
| HL_6OF1_133 | 1/2A/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_02361.6 | |
| HL_6OF1_135 | 1/2A/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_93727.5 | |
| HL_6OF1_136 | 1/2A/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.5 | |
| HL_6OF1_137 | 1/2A/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 HL_16898.3 | |
| HL_6OF1_138 | 1/2A/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_15942.5 | |
| HL_6OF1_139 | 1/2A/882:894 | No text annotation Not in a motif group | ||
| HL_6OF1_140 | 1/2A/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_43074.18 | |
| HL_6OF1_141 | 1/2A/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_72451.5 | |
| HL_6OF1_143 | 1/2A/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_43074.18 | |
| HL_6OF1_144 | 1/2A/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_33239.17 | |
| HL_6OF1_145 | 1/2A/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_86880.5 | |
| HL_6OF1_146 | 1/2A/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 HL_43074.18 | |
| HL_6OF1_147 | 1/2A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_78457.4 | |
| HL_6OF1_148 | 1/2A/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_71540.1 | |
| HL_6OF1_149 | 1/2A/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_86880.5 | |
| HL_6OF1_151 | 1/2A/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_69353.7 | |
| HL_6OF1_152 | 1/2A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_6OF1_153 | 1/2A/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_86880.5 | |
| HL_6OF1_154 | 1/2A/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_79299.11 | |
| HL_6OF1_155 | 1/2A/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_49638.1 | |
| HL_6OF1_156 | 1/2A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_79272.3 | |
| HL_6OF1_157 | 1/2A/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.4 | |
| HL_6OF1_158 | 1/2A/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_43074.18 | |
| HL_6OF1_159 | 1/2A/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_43074.18 | |
| HL_6OF1_160 | 1/2A/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_6OF1_161 | 1/2A/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_53760.4 | |
| HL_6OF1_162 | 1/2A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.5 | |
| HL_6OF1_164 | 1/2A/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_82131.1 | |
| HL_6OF1_165 | 1/2A/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_6OF1_166 | 1/2A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_6OF1_167 | 1/2A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_6OF1_168 | 1/2A/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_46142.8 | |
| HL_6OF1_169 | 1/2A/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_93727.5 | |
| HL_6OF1_170 | 1/2A/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_43074.18 | |
| HL_6OF1_171 | 1/2A/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_48376.4 | |
| HL_6OF1_172 | 1/2A/2471:2479 | No text annotation Not in a motif group | homologous HL_5J7L_193 HL_36421.5 | |
| HL_6OF1_173 | 1/2A/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_92681.5 | |
| HL_6OF1_174 | 1/2A/2551:2557 | No text annotation Not in a motif group | homologous HL_7RQB_062 NA | |
| HL_6OF1_175 | 1/2A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_6OF1_176 | 1/2A/2658:2663 | No text annotation Not in a motif group | geometric HL_5J7L_179 HL_32527.3 | |
| HL_6OF1_177 | 1/2A/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_31583.1 | |
| HL_6OF1_178 | 1/2A/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.5 | |
| HL_6OF1_180 | 1/2A/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_05018.6 | |
| HL_6OF1_181 | 1/2A/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_43074.18 | |
| HL_6OF1_182 | 1/2B/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 HL_02733.5 | |
| HL_6OF1_183 | 1/2B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_43074.18 | |
| HL_6OF1_184 | 1/2a/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_67265.4 | |
| HL_6OF1_186 | 1/2a/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_43074.18 | |
| HL_6OF1_187 | 1/2a/189C:189H | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_44730.2 | |
| HL_6OF1_188 | 1/2a/201:216 | No text annotation Not in a motif group | geometric HL_5TBW_071 HL_69353.7 | |
| HL_6OF1_189 | 1/2a/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_93727.5 | |
| HL_6OF1_190 | 1/2a/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_43074.18 | |
| HL_6OF1_191 | 1/2a/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6OF1_192 | 1/2a/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_79299.11 | |
| HL_6OF1_193 | 1/2a/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_43074.18 | |
| HL_6OF1_194 | 1/2a/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_79299.11 | |
| HL_6OF1_195 | 1/2a/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_68304.6 | |
| HL_6OF1_196 | 1/2a/521:528 | No text annotation Not in a motif group | geometric HL_6D12_001 HL_82678.2 | |
| HL_6OF1_197 | 1/2a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26055.6 | |
| HL_6OF1_198 | 1/2a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_87219.4 | |
| HL_6OF1_199 | 1/2a/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_43074.18 | |
| HL_6OF1_200 | 1/2a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_87219.4 | |
| HL_6OF1_201 | 1/2a/838:848 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_18722.3 | |
| HL_6OF1_202 | 1/2a/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_43074.18 | |
| HL_6OF1_203 | 1/2a/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_43074.18 | |
| HL_6OF1_204 | 1/2a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6OF1_205 | 1/2a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_43074.18 | |
| HL_6OF1_207 | 1/2a/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_43074.18 | |
| HL_6OF1_208 | 1/2a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_54035.7 | |
| HL_6OF1_209 | 1/2a/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_6OF1_210 | 1/2a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_43074.18 | |
| HL_6OF1_211 | 1/2a/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_43074.18 | |
| HL_6OF1_212 | 1/2a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_78061.2 | |
| HL_6OF1_213 | 1/2a/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_70505.1 | |
| HL_6OF1_214 | 1/2a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_16568.1 | |
| HL_6OF1_215 | 1/2a/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_6OF1_217 | 1/2w/31:39 | No text annotation Not in a motif group | ||
| HL_6OF1_218 | 1/2w/53:61 | No text annotation Not in a motif group | homologous HL_1H4S_003 NA | |
| HL_6OF1_219 | 1/2x/13:22 | No text annotation Not in a motif group | homologous HL_6CFJ_106 HL_51876.1 | |
| HL_6OF1_220 | 1/2x/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_6OF1_221 | 1/2x/53:61 | No text annotation Not in a motif group | homologous HL_6CFJ_108 NA | |
| HL_6OF1_223 | 1/2y/31:39 | No text annotation Not in a motif group | ||
| HL_6OF1_224 | 1/2y/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_2AZX_006 HL_33239.17 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6OF1_005 | No text annotation | ||
| HL_6OF1_017 | No text annotation | ||
| HL_6OF1_029 | No text annotation | ||
| HL_6OF1_030 | No text annotation | ||
| HL_6OF1_051 | UNCG | ||
| HL_6OF1_067 | No text annotation | ||
| HL_6OF1_073 | No text annotation | ||
| HL_6OF1_080 | No text annotation | ||
| HL_6OF1_094 | No text annotation | ||
| HL_6OF1_104 | No text annotation | ||
| HL_6OF1_110 | No text annotation | ||
| HL_6OF1_117 | No text annotation | ||
| HL_6OF1_129 | No text annotation | ||
| HL_6OF1_134 | No text annotation | ||
| HL_6OF1_142 | No text annotation | ||
| HL_6OF1_150 | No text annotation | ||
| HL_6OF1_163 | UNCG | ||
| HL_6OF1_179 | No text annotation | ||
| HL_6OF1_185 | No text annotation | ||
| HL_6OF1_206 | No text annotation | ||
| HL_6OF1_216 | No text annotation | ||
| HL_6OF1_222 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6OF1_001 | 1/1A/24:30, 1/1A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.5 | |
| IL_6OF1_002 | 1/1A/36:37, 1/1A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_80007.16 | |
| IL_6OF1_003 | 1/1A/42:43, 1/1A/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_06437.11 | |
| IL_6OF1_004 | 1/1A/81:85, 1/1A/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_29549.9 | |
| IL_6OF1_005 | 1/1A/183:184, 1/1A/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_04038.4 | |
| IL_6OF1_006 | 1/1A/188:194, 1/1A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 IL_04346.5 | |
| IL_6OF1_007 | 1/1A/239:245, 1/1A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_35110.5 | |
| IL_6OF1_008 | 1/1A/271I:271J, 1/1A/271M:271O | Single bulged U Not in a motif group | homologous IL_7RQB_008 IL_83039.11 | |
| IL_6OF1_009 | 1/1A/272D:272E, 1/1A/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_13730.12 | |
| IL_6OF1_011 | 1/1A/280:284, 1/1A/357:360 | tSH-tHW Not in a motif group | geometric IL_7RQB_011 IL_08757.3 | |
| IL_6OF1_012 | 1/1A/288:290, 1/1A/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.6 | |
| IL_6OF1_013 | 1/1A/293:295, 1/1A/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_6OF1_014 | 1/1A/481:484, 1/1A/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 IL_60992.5 | |
| IL_6OF1_015 | 1/1A/564:566, 1/1A/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_01312.13 | |
| IL_6OF1_016 | 1/1A/606:610, 1/1A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_56467.6 | |
| IL_6OF1_017 | 1/1A/672:674, 1/1A/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_01312.13 | |
| IL_6OF1_018 | 1/1A/674:678, 1/1A/799:806 | No text annotation Not in a motif group | homologous IL_7RQB_018 IL_17470.5 | |
| IL_6OF1_019 | 1/1A/697:698, 1/1A/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_80007.16 | |
| IL_6OF1_020 | 1/1A/702:703, 1/1A/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_59137.10 | |
| IL_6OF1_021 | 1/1A/703:707, 1/1A/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.6 | |
| IL_6OF1_022 | 1/1A/738:741, 1/1A/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_95485.6 | |
| IL_6OF1_023 | 1/1A/775:777, 1/1A/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.5 | |
| IL_6OF1_024 | 1/1A/837:838, 1/1A/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_04038.4 | |
| IL_6OF1_025 | 1/1A/844:846, 1/1A/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_01312.13 | |
| IL_6OF1_026 | 1/1A/846:850, 1/1A/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_6OF1_027 | 1/1A/858:862, 1/1A/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_83354.1 | |
| IL_6OF1_028 | 1/1A/862:863, 1/1A/913:915 | Minor groove platform Not in a motif group | homologous IL_7RQB_028 IL_06437.11 | |
| IL_6OF1_029 | 1/1A/864:868, 1/1A/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_63596.4 | |
| IL_6OF1_030 | 1/1A/870:872, 1/1A/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_67621.5 | |
| IL_6OF1_031 | 1/1A/875:877, 1/1A/899:902 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 IL_87332.1 | |
| IL_6OF1_032 | 1/1A/877:882, 1/1A/894:899 | No text annotation Not in a motif group | ||
| IL_6OF1_033 | 1/1A/952:954, 1/1A/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_01312.13 | |
| IL_6OF1_034 | 1/1A/994:996, 1/1A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.10 | |
| IL_6OF1_035 | 1/1A/998:1002, 1/1A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_53523.5 | |
| IL_6OF1_036 | 1/1A/1004:1011, 1/1A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.6 | |
| IL_6OF1_037 | 1/1A/1011:1013, 1/1A/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.11 | |
| IL_6OF1_038 | 1/1A/1018:1024, 1/1A/1140:1144 | No text annotation Not in a motif group | homologous IL_7RQB_039 IL_57188.3 | |
| IL_6OF1_039 | 1/1A/1024:1030, 1/1A/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_55786.1 | |
| IL_6OF1_040 | 1/1A/1031:1034, 1/1A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_55456.1 | |
| IL_6OF1_041 | 1/1A/1043:1051, 1/1A/1108:1112 | Kink-turn Not in a motif group | homologous IL_7RQB_042 IL_90538.3 | |
| IL_6OF1_043 | 1/1A/1196:1198, 1/1A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_67621.5 | |
| IL_6OF1_044 | 1/1A/1202:1206, 1/1A/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_6OF1_045 | 1/1A/1208:1215, 1/1A/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_29549.9 | |
| IL_6OF1_046 | 1/1A/1219:1221, 1/1A/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_80007.16 | |
| IL_6OF1_047 | 1/1A/1262:1269, 1/1A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.5 | |
| IL_6OF1_048 | 1/1A/1310:1313, 1/1A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_70995.6 | |
| IL_6OF1_049 | 1/1A/1319:1324, 1/1A/1330:1333 | C-loop with extra cWW pair Not in a motif group | geometric IL_4V88_408 IL_51590.1 | |
| IL_6OF1_050 | 1/1A/1351:1355, 1/1A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_53523.5 | |
| IL_6OF1_051 | 1/1A/1357:1361, 1/1A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_39521.5 | |
| IL_6OF1_052 | 1/1A/1415:1416, 1/1A/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.3 | |
| IL_6OF1_053 | 1/1A/1417:1421, 1/1A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_53523.5 | |
| IL_6OF1_054 | 1/1A/1433:1435, 1/1A/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.5 | |
| IL_6OF1_055 | 1/1A/1437:1440, 1/1A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_08757.3 | |
| IL_6OF1_056 | 1/1A/1448:1450, 1/1A/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_31836.1 | |
| IL_6OF1_057 | 1/1A/1450A:1451, 1/1A/1459:1461 | Single bulged A Not in a motif group | homologous IL_7RQB_059 IL_80007.16 | |
| IL_6OF1_058 | 1/1A/1469:1473, 1/1A/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_53523.5 | |
| IL_6OF1_059 | 1/1A/1481:1482, 1/1A/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_46464.1 | |
| IL_6OF1_060 | 1/1A/1489:1491, 1/1A/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_40508.4 | |
| IL_6OF1_061 | 1/1A/1526:1529, 1/1A/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_89836.1 | |
| IL_6OF1_062 | 1/1A/1651:1656, 1/1A/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_6OF1_063 | 1/1A/1663:1665, 1/1A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.5 | |
| IL_6OF1_064 | 1/1A/1666:1669, 1/1A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 IL_80663.10 | |
| IL_6OF1_065 | 1/1A/1669:1674, 1/1A/1990:1993 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 IL_01312.13 | |
| IL_6OF1_066 | 1/1A/1686:1691, 1/1A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_66584.5 | |
| IL_6OF1_067 | 1/1A/1770:1771, 1/1A/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_80007.16 | |
| IL_6OF1_068 | 1/1A/1798:1804, 1/1A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_6OF1_069 | 1/1A/1837:1840, 1/1A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_31836.1 | |
| IL_6OF1_070 | 1/1A/1841:1842, 1/1A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_13730.12 | |
| IL_6OF1_071 | 1/1A/1846:1849, 1/1A/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_06437.11 | |
| IL_6OF1_072 | 1/1A/1851:1855, 1/1A/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_34907.2 | |
| IL_6OF1_073 | 1/1A/1856:1860, 1/1A/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.6 | |
| IL_6OF1_074 | 1/1A/1933:1934, 1/1A/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 IL_69632.1 | |
| IL_6OF1_075 | 1/1A/1934:1945, 1/1A/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_70285.1 | |
| IL_6OF1_076 | 1/1A/2050:2052, 1/1A/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_80663.10 | |
| IL_6OF1_077 | 1/1A/2054:2057, 1/1A/2611:2615 | No text annotation Not in a motif group | ||
| IL_6OF1_078 | 1/1A/2067:2069, 1/1A/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.11 | |
| IL_6OF1_079 | 1/1A/2070:2071, 1/1A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_4WF9_081 IL_06437.11 | |
| IL_6OF1_080 | 1/1A/2081:2083, 1/1A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.6 | |
| IL_6OF1_081 | 1/1A/2085:2087, 1/1A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_01312.13 | |
| IL_6OF1_086 | 1/1A/2297:2299, 1/1A/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.6 | |
| IL_6OF1_087 | 1/1A/2350:2353, 1/1A/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.7 | |
| IL_6OF1_088 | 1/1A/2401:2403, 1/1A/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_80663.10 | |
| IL_6OF1_089 | 1/1A/2453:2454, 1/1A/2498:2500 | Single stack bend Not in a motif group | homologous IL_7RQB_091 IL_04038.4 | |
| IL_6OF1_090 | 1/1A/2454:2455, 1/1A/2496:2498 | Major groove platform Not in a motif group | geometric IL_7RQB_092 IL_80663.10 | |
| IL_6OF1_091 | 1/1A/2457:2459, 1/1A/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_80663.10 | |
| IL_6OF1_092 | 1/1A/2459:2461, 1/1A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_96042.4 | |
| IL_6OF1_093 | 1/1A/2466:2470, 1/1A/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.6 | |
| IL_6OF1_094 | 1/1A/2507:2508, 1/1A/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_02060.4 | |
| IL_6OF1_095 | 1/1A/2510:2512, 1/1A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_01312.13 | |
| IL_6OF1_096 | 1/1A/2512:2513, 1/1A/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_13730.12 | |
| IL_6OF1_097 | 1/1A/2522:2523, 1/1A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.1 | |
| IL_6OF1_098 | 1/1A/2588:2590, 1/1A/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_6OF1_099 | 1/1A/2591:2592, 1/1A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_80007.16 | |
| IL_6OF1_100 | 1/1A/2636:2640, 1/1A/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_34907.2 | |
| IL_6OF1_101 | 1/1A/2652:2658, 1/1A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_35110.5 | |
| IL_6OF1_102 | 1/1A/2680:2684, 1/1A/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.4 | |
| IL_6OF1_103 | 1/1A/2687:2691, 1/1A/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_6OF1_104 | 1/1A/2695:2696, 1/1A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 |