4LT8 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4LT8_001 | 1/QA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4LT8_003 | 1/QA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_4LT8_004 | 1/QA/186F:191A | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_10278.1 | |
| HL_4LT8_005 | 1/QA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4LT8_006 | 1/QA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4LT8_007 | 1/QA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4LT8_008 | 1/QA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4LT8_009 | 1/QA/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_4LT8_010 | 1/QA/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_4LT8_011 | 1/QA/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_4LT8_012 | 1/QA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4LT8_013 | 1/QA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4LT8_014 | 1/QA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4LT8_015 | 1/QA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4LT8_017 | 1/QA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4LT8_018 | 1/QA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_4LT8_019 | 1/QA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4LT8_020 | 1/QA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4LT8_021 | 1/QA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4LT8_022 | 1/QA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_4LT8_024 | 1/QA/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_4LT8_026 | 1/QA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4LT8_027 | 1/QA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4LT8_028 | 1/QA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_4LT8_029 | 1/QA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4LT8_031 | 1/QA/1449:1454 | No text annotation Not in a motif group | geometric HL_5TBW_004 HL_98426.1 | |
| HL_4LT8_032 | 1/QA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4LT8_033 | 1/QV/13:22 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_25462.2 | |
| HL_4LT8_034 | 1/QV/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_4V9Q_214 HL_53597.2 | |
| HL_4LT8_035 | 1/QV/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4TUE_035 HL_71309.1 | |
| HL_4LT8_037 | 1/RA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4LT8_038 | 1/RA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_4LT8_039 | 1/RA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_4LT8_040 | 1/RA/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4LT8_042 | 1/RA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_4LT8_043 | 1/RA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4LT8_044 | 1/RA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4LT8_045 | 1/RA/270J:270P | No text annotation Not in a motif group | ||
| HL_4LT8_046 | 1/RA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_4LT8_047 | 1/RA/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_4LT8_048 | 1/RA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_4LT8_049 | 1/RA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4LT8_050 | 1/RA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4LT8_051 | 1/RA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4LT8_052 | 1/RA/487:493 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_4LT8_053 | 1/RA/544:549 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4LT8_054 | 1/RA/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_89380.2 | |
| HL_4LT8_055 | 1/RA/611:617 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
| HL_4LT8_057 | 1/RA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_4LT8_058 | 1/RA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4LT8_059 | 1/RA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4LT8_060 | 1/RA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_4LT8_061 | 1/RA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4LT8_063 | 1/RA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4LT8_064 | 1/RA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4LT8_067 | 1/RA/1171:1178 | No text annotation Not in a motif group | geometric HL_4L8H_001 HL_53837.1 | |
| HL_4LT8_068 | 1/RA/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4LT8_069 | 1/RA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_4LT8_070 | 1/RA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_4LT8_071 | 1/RA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4LT8_072 | 1/RA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_4LT8_073 | 1/RA/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_4LT8_074 | 1/RA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_4LT8_075 | 1/RA/1533:1538 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_4LT8_076 | 1/RA/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_4LT8_077 | 1/RA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_4LT8_078 | 1/RA/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4LT8_079 | 1/RA/1691:1696 | UNCG Not in a motif group | geometric HL_5D5L_003 HL_03562.2 | |
| HL_4LT8_080 | 1/RA/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_4LT8_081 | 1/RA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4LT8_082 | 1/RA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4LT8_083 | 1/RA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4LT8_084 | 1/RA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4LT8_085 | 1/RA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4LT8_086 | 1/RA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4LT8_087 | 1/RA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4LT8_089 | 1/RA/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_4LT8_090 | 1/RA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4LT8_091 | 1/RA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4LT8_092 | 1/RA/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_4LT8_093 | 1/RA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4LT8_094 | 1/RA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4LT8_095 | 1/RA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_4LT8_096 | 1/RA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4LT8_097 | 1/RA/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_4LT8_098 | 1/RA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4LT8_099 | 1/RA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4LT8_100 | 1/RA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4LT8_101 | 1/RA/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_42097.1 | |
| HL_4LT8_102 | 1/RA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4LT8_103 | 1/RA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4LT8_105 | 1/RA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4LT8_106 | 1/RA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4LT8_107 | 1/RB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_4LT8_108 | 1/RB/86:90 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 | |
| HL_4LT8_109 | 1/XA/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4LT8_111 | 1/XA/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_42097.1 | |
| HL_4LT8_112 | 1/XA/186F:191A | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_4LT8_113 | 1/XA/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_4LT8_114 | 1/XA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_4LT8_115 | 1/XA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_4LT8_116 | 1/XA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4LT8_117 | 1/XA/341:348 | No text annotation Not in a motif group | ||
| HL_4LT8_119 | 1/XA/419:424 | No text annotation Not in a motif group | homologous HL_6CZR_082 HL_03562.2 | |
| HL_4LT8_120 | 1/XA/458:474 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_4LT8_121 | 1/XA/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_4LT8_122 | 1/XA/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_4LT8_123 | 1/XA/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_4LT8_125 | 1/XA/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_4LT8_126 | 1/XA/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_53837.1 | |
| HL_4LT8_127 | 1/XA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_4LT8_128 | 1/XA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_4LT8_129 | 1/XA/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4LT8_132 | 1/XA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_4LT8_133 | 1/XA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4LT8_134 | 1/XA/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4LT8_135 | 1/XA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_4LT8_136 | 1/XA/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_4LT8_137 | 1/XA/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_4LT8_138 | 1/XA/1356:1366 | No text annotation Not in a motif group | ||
| HL_4LT8_139 | 1/XA/1449:1454 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_89098.1 | |
| HL_4LT8_140 | 1/XA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4LT8_141 | 1/XV/13:22 | No text annotation Not in a motif group | homologous HL_4TUE_033 HL_25462.2 | |
| HL_4LT8_142 | 1/XV/31:39 | No text annotation Not in a motif group | homologous HL_5E81_212 NA | |
| HL_4LT8_143 | 1/XV/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4TUE_035 HL_71309.1 | |
| HL_4LT8_145 | 1/YA/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_4LT8_146 | 1/YA/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_4LT8_147 | 1/YA/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 HL_75407.1 | |
| HL_4LT8_148 | 1/YA/137A:141A | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_4LT8_150 | 1/YA/194:201 | No text annotation Not in a motif group | geometric HL_5J7L_139 HL_06192.2 | |
| HL_4LT8_151 | 1/YA/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_4LT8_152 | 1/YA/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 HL_67216.7 | |
| HL_4LT8_153 | 1/YA/270K:270N | No text annotation Not in a motif group | homologous HL_7RQB_009 HL_89098.1 | |
| HL_4LT8_154 | 1/YA/305:312 | No text annotation Not in a motif group | homologous HL_7RQB_010 HL_89380.2 | |
| HL_4LT8_155 | 1/YA/319:323 | No text annotation Not in a motif group | homologous HL_7RQB_011 HL_75407.1 | |
| HL_4LT8_156 | 1/YA/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_4LT8_157 | 1/YA/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_4LT8_158 | 1/YA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_4LT8_159 | 1/YA/462:467 | No text annotation Not in a motif group | homologous HL_7RQB_015 HL_42097.1 | |
| HL_4LT8_160 | 1/YA/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_4LT8_161 | 1/YA/544:549 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_4LT8_162 | 1/YA/566:575 | No text annotation Not in a motif group | geometric HL_7RQB_018 HL_89380.2 | |
| HL_4LT8_163 | 1/YA/611:617 | No text annotation Not in a motif group | homologous HL_7A0S_019 HL_32369.1 | |
| HL_4LT8_164 | 1/YA/629:634 | No text annotation Not in a motif group | homologous HL_7RQB_020 HL_42097.1 | |
| HL_4LT8_165 | 1/YA/641:647 | GNRA with one bulged base Not in a motif group | homologous HL_4WF9_021 HL_42097.1 | |
| HL_4LT8_166 | 1/YA/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_4LT8_167 | 1/YA/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_4LT8_168 | 1/YA/779:785 | No text annotation Not in a motif group | homologous HL_7A0S_023 HL_27930.1 | |
| HL_4LT8_169 | 1/YA/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_64365.1 | |
| HL_4LT8_170 | 1/YA/884:892 | No text annotation Not in a motif group | ||
| HL_4LT8_171 | 1/YA/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_4LT8_172 | 1/YA/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_4LT8_175 | 1/YA/1171:1178 | No text annotation Not in a motif group | geometric HL_5U30_001 HL_53837.1 | |
| HL_4LT8_176 | 1/YA/1223:1228 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_4LT8_177 | 1/YA/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_4LT8_178 | 1/YA/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_4LT8_179 | 1/YA/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_4LT8_180 | 1/YA/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_4LT8_181 | 1/YA/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_4LT8_182 | 1/YA/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_4LT8_183 | 1/YA/1533:1538 | No text annotation Not in a motif group | ||
| HL_4LT8_184 | 1/YA/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_4LT8_185 | 1/YA/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_4LT8_186 | 1/YA/1630A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_4LT8_187 | 1/YA/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_03562.2 | |
| HL_4LT8_188 | 1/YA/1727:1733 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_4LT8_189 | 1/YA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_4LT8_190 | 1/YA/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_4LT8_191 | 1/YA/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_4LT8_192 | 1/YA/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_4LT8_193 | 1/YA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4LT8_194 | 1/YA/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 HL_51824.1 | |
| HL_4LT8_195 | 1/YA/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_4LT8_197 | 1/YA/2209:2215 | No text annotation Not in a motif group | homologous HL_7RQB_052 HL_98426.1 | |
| HL_4LT8_198 | 1/YA/2248:2256 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4LT8_199 | 1/YA/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.6 | |
| HL_4LT8_200 | 1/YA/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_4LT8_201 | 1/YA/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_4LT8_202 | 1/YA/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_4LT8_203 | 1/YA/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_4LT8_204 | 1/YA/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_4LT8_205 | 1/YA/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_4LT8_206 | 1/YA/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_4LT8_207 | 1/YA/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4LT8_208 | 1/YA/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4LT8_209 | 1/YA/2658:2663 | No text annotation Not in a motif group | geometric HL_7RQB_064 HL_42097.1 | |
| HL_4LT8_210 | 1/YA/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_4LT8_211 | 1/YA/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.7 | |
| HL_4LT8_213 | 1/YA/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 HL_27930.1 | |
| HL_4LT8_214 | 1/YA/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_4LT8_215 | 1/YB/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 HL_87939.1 | |
| HL_4LT8_216 | 1/YB/86:90 | No text annotation Not in a motif group | homologous HL_7RQB_071 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4LT8_002 | No text annotation | ||
| HL_4LT8_016 | Other HL | ||
| HL_4LT8_023 | No text annotation | ||
| HL_4LT8_025 | No text annotation | ||
| HL_4LT8_030 | No text annotation | ||
| HL_4LT8_036 | No text annotation | ||
| HL_4LT8_041 | No text annotation | ||
| HL_4LT8_056 | No text annotation | ||
| HL_4LT8_062 | No text annotation | ||
| HL_4LT8_065 | No text annotation | ||
| HL_4LT8_066 | No text annotation | ||
| HL_4LT8_088 | UNCG | ||
| HL_4LT8_104 | No text annotation | ||
| HL_4LT8_110 | No text annotation | ||
| HL_4LT8_118 | GNRA | ||
| HL_4LT8_124 | Other HL | ||
| HL_4LT8_130 | GNRA | ||
| HL_4LT8_131 | No text annotation | ||
| HL_4LT8_144 | tRNA anticodon loop | ||
| HL_4LT8_149 | No text annotation | ||
| HL_4LT8_173 | No text annotation | ||
| HL_4LT8_174 | No text annotation | ||
| HL_4LT8_196 | UNCG | ||
| HL_4LT8_212 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4LT8_001 | 1/QA/30:32, 1/QA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_4LT8_002 | 1/QA/44:45, 1/QA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4LT8_003 | 1/QA/47:52, 1/QA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_4LT8_004 | 1/QA/54:56, 1/QA/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_4LT8_007 | 1/QA/129:131, 1/QA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_4LT8_008 | 1/QA/132:136, 1/QA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4LT8_009 | 1/QA/148:153, 1/QA/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4LT8_011 | 1/QA/242:247, 1/QA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4LT8_012 | 1/QA/249:252, 1/QA/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4LT8_013 | 1/QA/292:293, 1/QA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4LT8_014 | 1/QA/367:369, 1/QA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_4LT8_015 | 1/QA/371:375, 1/QA/389:390 | C-loop Not in a motif group | homologous IL_4LFB_015 IL_75255.1 | |
| IL_4LT8_016 | 1/QA/375:376, 1/QA/387:389 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_4LT8_017 | 1/QA/409:416, 1/QA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4LT8_018 | 1/QA/446:450, 1/QA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_4LT8_019 | 1/QA/450:455, 1/QA/477:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_4LT8_020 | 1/QA/504:511, 1/QA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4LT8_021 | 1/QA/515:521, 1/QA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4LT8_022 | 1/QA/569:575, 1/QA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4LT8_023 | 1/QA/580:584, 1/QA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4LT8_024 | 1/QA/594:596, 1/QA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4LT8_025 | 1/QA/597:598, 1/QA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_4LT8_026 | 1/QA/605:612, 1/QA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4LT8_027 | 1/QA/654:655, 1/QA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_4LT8_028 | 1/QA/657:658, 1/QA/747:749 | Major groove platform Not in a motif group | homologous IL_6CZR_140 IL_27635.1 | |
| IL_4LT8_029 | 1/QA/662:666, 1/QA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4LT8_030 | 1/QA/673:678, 1/QA/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_4LT8_031 | 1/QA/683:688, 1/QA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4LT8_032 | 1/QA/774:778, 1/QA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4LT8_033 | 1/QA/779:783, 1/QA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4LT8_034 | 1/QA/887:894, 1/QA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4LT8_036 | 1/QA/925:927, 1/QA/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_4LT8_037 | 1/QA/933:935, 1/QA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_4LT8_038 | 1/QA/953:954, 1/QA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4LT8_039 | 1/QA/1048:1050, 1/QA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4LT8_042 | 1/QA/1060:1061, 1/QA/1195:1197 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.13 | |
| IL_4LT8_043 | 1/QA/1061:1063, 1/QA/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_4LT8_044 | 1/QA/1123:1128, 1/QA/1144:1150 | No text annotation Not in a motif group | ||
| IL_4LT8_045 | 1/QA/1128:1132, 1/QA/1142:1144 | No text annotation Not in a motif group | ||
| IL_4LT8_046 | 1/QA/1247:1253, 1/QA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4LT8_047 | 1/QA/1255:1258, 1/QA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4LT8_048 | 1/QA/1259:1260, 1/QA/1274:1276 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
| IL_4LT8_049 | 1/QA/1260:1262, 1/QA/1273:1274 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_93353.1 | |
| IL_4LT8_050 | 1/QA/1303:1308, 1/QA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4LT8_051 | 1/QA/1399:1401, 1/QA/1501:1504 | No text annotation Not in a motif group | homologous IL_4LFB_056 NA | |
| IL_4LT8_052 | 1/QA/1401:1404, 1/QA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4LT8_053 | 1/QA/1405:1407, 1/QA/1494:1496 | UU cWW Not in a motif group | geometric IL_4ZC7_004 IL_95997.1 | |
| IL_4LT8_054 | 1/QA/1407:1409, 1/QA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4LT8_055 | 1/QA/1412:1414, 1/QA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4LT8_056 | 1/QA/1416:1419, 1/QA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4LT8_057 | 1/QA/1431:1435, 1/QA/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_4LT8_058 | 1/QA/1435:1437, 1/QA/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_4LT8_059 | 1/QA/1440:1447, 1/QA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_4LT8_060 | 1/RA/24:30, 1/RA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 IL_66414.6 | |
| IL_4LT8_061 | 1/RA/36:37, 1/RA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4LT8_062 | 1/RA/43:44, 1/RA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 IL_42622.2 | |
| IL_4LT8_063 | 1/RA/81:85, 1/RA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4LT8_064 | 1/RA/183:184, 1/RA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4LT8_065 | 1/RA/188:194, 1/RA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_4LT8_066 | 1/RA/239:245, 1/RA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_4LT8_067 | 1/RA/271:272, 1/RA/365:366 | No text annotation Not in a motif group | ||
| IL_4LT8_068 | 1/RA/273:273B, 1/RA/363D:364 | No text annotation Not in a motif group | geometric IL_4V9F_072 IL_63450.2 | |
| IL_4LT8_069 | 1/RA/273F:279, 1/RA/361:363 | No text annotation Not in a motif group | ||
| IL_4LT8_070 | 1/RA/280:284, 1/RA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_4LT8_071 | 1/RA/288:290, 1/RA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_4LT8_072 | 1/RA/293:295, 1/RA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4LT8_073 | 1/RA/481:484, 1/RA/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_4LT8_074 | 1/RA/564:566, 1/RA/575:577 | No text annotation Not in a motif group | geometric IL_7RQB_015 IL_95997.1 | |
| IL_4LT8_075 | 1/RA/606:609A, 1/RA/618A:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_4LT8_076 | 1/RA/672:674, 1/RA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_4LT8_077 | 1/RA/674:678, 1/RA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_4LT8_078 | 1/RA/697:698, 1/RA/763:765 | Single bulged A Not in a motif group | homologous IL_7RQB_019 IL_37497.2 | |
| IL_4LT8_079 | 1/RA/702:703, 1/RA/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 IL_00225.2 | |
| IL_4LT8_080 | 1/RA/703:707, 1/RA/724:728 | Triple sheared Not in a motif group | homologous IL_7RQB_021 IL_56467.8 | |
| IL_4LT8_081 | 1/RA/738:741, 1/RA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7A0S_019 IL_05564.2 | |
| IL_4LT8_082 | 1/RA/775:777, 1/RA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 IL_90991.6 | |
| IL_4LT8_083 | 1/RA/837:838, 1/RA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 IL_92001.1 | |
| IL_4LT8_084 | 1/RA/844:846, 1/RA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_4LT8_085 | 1/RA/846:850, 1/RA/928:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4LT8_088 | 1/RA/864:868, 1/RA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4LT8_089 | 1/RA/870:872, 1/RA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_4LT8_091 | 1/RA/880:881, 1/RA/895:897 | Single bulged A Not in a motif group | geometric IL_4V9F_098 IL_37497.2 | |
| IL_4LT8_092 | 1/RA/952:954, 1/RA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4LT8_093 | 1/RA/994:996, 1/RA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_4LT8_094 | 1/RA/998:1002, 1/RA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_4LT8_095 | 1/RA/1004:1011, 1/RA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.7 | |
| IL_4LT8_096 | 1/RA/1011:1013, 1/RA/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_4LT8_097 | 1/RA/1018:1024, 1/RA/1140:1144 | No text annotation Not in a motif group | geometric IL_4WF9_039 IL_57188.3 | |
| IL_4LT8_098 | 1/RA/1024:1030, 1/RA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4LT8_100 | 1/RA/1042:1051, 1/RA/1108:1113 | No text annotation Not in a motif group | ||
| IL_4LT8_103 | 1/RA/1196:1198, 1/RA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_4LT8_104 | 1/RA/1202:1206, 1/RA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4LT8_105 | 1/RA/1208:1215, 1/RA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4LT8_106 | 1/RA/1219:1221, 1/RA/1229A:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4LT8_107 | 1/RA/1262:1269, 1/RA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4LT8_108 | 1/RA/1310:1313, 1/RA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_4LT8_109 | 1/RA/1319:1323, 1/RA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_4LT8_110 | 1/RA/1351:1355, 1/RA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4LT8_111 | 1/RA/1357:1361, 1/RA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_4LT8_112 | 1/RA/1415:1416, 1/RA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_4LT8_113 | 1/RA/1417:1421, 1/RA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_4LT8_114 | 1/RA/1433:1435, 1/RA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_4LT8_115 | 1/RA/1437:1440, 1/RA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4LT8_117 | 1/RA/1450:1451, 1/RA/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_4LT8_118 | 1/RA/1469:1473, 1/RA/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4LT8_119 | 1/RA/1482:1483, 1/RA/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_4LT8_120 | 1/RA/1489:1491, 1/RA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_4LT8_121 | 1/RA/1526:1530, 1/RA/1541:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_4LT8_122 | 1/RA/1651:1656, 1/RA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4LT8_123 | 1/RA/1663:1665, 1/RA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.7 | |
| IL_4LT8_124 | 1/RA/1666:1669, 1/RA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4LT8_125 | 1/RA/1669:1674, 1/RA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_4LT8_126 | 1/RA/1686:1691, 1/RA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 IL_65969.2 | |
| IL_4LT8_127 | 1/RA/1770:1771, 1/RA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4LT8_128 | 1/RA/1798:1804, 1/RA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4LT8_129 | 1/RA/1837:1840, 1/RA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_4LT8_130 | 1/RA/1841:1842, 1/RA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_4LT8_131 | 1/RA/1846:1849, 1/RA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4LT8_132 | 1/RA/1851:1855, 1/RA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_4LT8_133 | 1/RA/1856:1860, 1/RA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4LT8_134 | 1/RA/1933:1934, 1/RA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_4LT8_135 | 1/RA/1934:1945, 1/RA/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_4LT8_136 | 1/RA/2050:2052, 1/RA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_4LT8_137 | 1/RA/2054:2057, 1/RA/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_4LT8_138 | 1/RA/2067:2069, 1/RA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4LT8_139 | 1/RA/2070:2071, 1/RA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_5J7L_324 IL_42622.2 | |
| IL_4LT8_140 | 1/RA/2081:2083, 1/RA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4LT8_141 | 1/RA/2085:2087, 1/RA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4LT8_142 | 1/RA/2108:2110, 1/RA/2179:2181 | No text annotation Not in a motif group | geometric IL_4KZD_003 IL_95997.1 | |
| IL_4LT8_146 | 1/RA/2297:2299, 1/RA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_088 IL_38958.7 | |
| IL_4LT8_147 | 1/RA/2350:2353, 1/RA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_4LT8_148 | 1/RA/2401:2403, 1/RA/2414:2415 | No text annotation Not in a motif group | ||
| IL_4LT8_149 | 1/RA/2453:2454, 1/RA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_4LT8_150 | 1/RA/2454:2455, 1/RA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_4LT8_151 | 1/RA/2457:2459, 1/RA/2493:2494 | Major groove platform Not in a motif group | homologous IL_4WF9_091 IL_27635.1 | |
| IL_4LT8_152 | 1/RA/2459:2461, 1/RA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_094 IL_92788.2 | |
| IL_4LT8_153 | 1/RA/2466:2470, 1/RA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4LT8_154 | 1/RA/2507:2508, 1/RA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_4LT8_155 | 1/RA/2510:2512, 1/RA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 IL_90933.2 | |
| IL_4LT8_156 | 1/RA/2512:2513, 1/RA/2571:2574 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 IL_71530.2 | |
| IL_4LT8_158 | 1/RA/2591:2592, 1/RA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4LT8_159 | 1/RA/2636:2640, 1/RA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_4LT8_160 | 1/RA/2652:2658, 1/RA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 IL_16458.1 | |
| IL_4LT8_161 | 1/RA/2680:2684, 1/RA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_4LT8_162 | 1/RA/2687:2691, 1/RA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4LT8_163 | 1/RA/2695:2696, 1/RA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4LT8_164 | 1/RA/2737:2742, 1/RA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_4LT8_165 | 1/RA/2838:2839, 1/RA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4LT8_166 | 1/RA/2843:2846, 1/RA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4LT8_167 | 1/RA/2847:2852, 1/RA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4LT8_168 | 1/RB/17:18, 1/RB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_4LT8_169 | 1/RB/23:28, 1/RB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4LT8_170 | 1/RB/30:32, 1/RB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4LT8_171 | 1/RB/34:38, 1/RB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_4LT8_172 | 1/RB/71:79, 1/RB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_4LT8_173 | 1/XA/30:32, 1/XA/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_4LT8_174 | 1/XA/44:45, 1/XA/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_4LT8_175 | 1/XA/47:52, 1/XA/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_11178.1 | |
| IL_4LT8_176 | 1/XA/54:56, 1/XA/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_93353.1 | |
| IL_4LT8_179 | 1/XA/129:131, 1/XA/231:232 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_119 IL_16396.2 | |
| IL_4LT8_180 | 1/XA/132:136, 1/XA/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_4LT8_183 | 1/XA/242:247, 1/XA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_4LT8_184 | 1/XA/249:252, 1/XA/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_4LT8_185 | 1/XA/292:293, 1/XA/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4LT8_188 | 1/XA/375:376, 1/XA/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_4LT8_189 | 1/XA/409:416, 1/XA/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4LT8_190 | 1/XA/446:450, 1/XA/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_4LT8_191 | 1/XA/450:455, 1/XA/477:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_4LT8_192 | 1/XA/504:511, 1/XA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_4LT8_193 | 1/XA/515:521, 1/XA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4LT8_194 | 1/XA/569:575, 1/XA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_4LT8_195 | 1/XA/580:584, 1/XA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_4LT8_196 | 1/XA/594:596, 1/XA/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_4LT8_197 | 1/XA/597:598, 1/XA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_4LT8_198 | 1/XA/605:612, 1/XA/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4LT8_199 | 1/XA/654:655, 1/XA/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_4LT8_200 | 1/XA/657:658, 1/XA/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_4LT8_201 | 1/XA/662:666, 1/XA/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4LT8_202 | 1/XA/673:678, 1/XA/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_4LT8_203 | 1/XA/683:688, 1/XA/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4LT8_204 | 1/XA/774:778, 1/XA/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4LT8_205 | 1/XA/779:783, 1/XA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_4LT8_206 | 1/XA/887:894, 1/XA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4LT8_207 | 1/XA/922:923, 1/XA/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_4LT8_208 | 1/XA/925:927, 1/XA/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_4LT8_209 | 1/XA/933:935, 1/XA/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_4LT8_210 | 1/XA/953:954, 1/XA/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_4LT8_211 | 1/XA/993:997, 1/XA/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_4LT8_212 | 1/XA/1048:1050, 1/XA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_4LT8_213 | 1/XA/1052:1056, 1/XA/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4LT8_214 | 1/XA/1057:1058, 1/XA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_4LT8_215 | 1/XA/1060:1061, 1/XA/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_4LT8_216 | 1/XA/1061:1063, 1/XA/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_4LT8_217 | 1/XA/1123:1128, 1/XA/1144:1150 | No text annotation Not in a motif group | ||
| IL_4LT8_218 | 1/XA/1128:1132, 1/XA/1142:1144 | No text annotation Not in a motif group | ||
| IL_4LT8_219 | 1/XA/1247:1253, 1/XA/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4LT8_220 | 1/XA/1255:1258, 1/XA/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4LT8_221 | 1/XA/1259:1260, 1/XA/1274:1276 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
| IL_4LT8_222 | 1/XA/1260:1262, 1/XA/1273:1274 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_93353.1 | |
| IL_4LT8_223 | 1/XA/1303:1308, 1/XA/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4LT8_224 | 1/XA/1399:1401, 1/XA/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_4LT8_225 | 1/XA/1401:1404, 1/XA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4LT8_226 | 1/XA/1405:1407, 1/XA/1494:1496 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_4LT8_227 | 1/XA/1407:1409, 1/XA/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_4LT8_228 | 1/XA/1412:1414, 1/XA/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_4LT8_229 | 1/XA/1416:1419, 1/XA/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_4LT8_230 | 1/XA/1431:1435, 1/XA/1466:1469 | UAA/GAN variation Not in a motif group | homologous IL_4LFB_062 IL_07235.1 | |
| IL_4LT8_231 | 1/XA/1435:1437, 1/XA/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_4LT8_232 | 1/XA/1440:1447, 1/XA/1459:1461 | No text annotation Not in a motif group | homologous IL_4LFB_064 IL_92788.2 | |
| IL_4LT8_233 | 1/YA/24:30, 1/YA/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_7RQB_001 IL_66414.6 | |
| IL_4LT8_234 | 1/YA/36:37, 1/YA/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_4LT8_235 | 1/YA/43:45, 1/YA/433:436 | Major groove platform with extra cWW Not in a motif group | geometric IL_4V9F_003 IL_18471.2 | |
| IL_4LT8_236 | 1/YA/81:85, 1/YA/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_4LT8_237 | 1/YA/183:184, 1/YA/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 IL_76488.2 | |
| IL_4LT8_238 | 1/YA/188:194, 1/YA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_4LT8_239 | 1/YA/239:245, 1/YA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_76042.2 | |
| IL_4LT8_240 | 1/YA/270J:270K, 1/YA/270N:270P | Single bulged U Not in a motif group | geometric IL_7RQB_008 IL_83039.13 | |
| IL_4LT8_241 | 1/YA/271:272, 1/YA/365:366 | No text annotation Not in a motif group | ||
| IL_4LT8_243 | 1/YA/273F:278, 1/YA/362:363 | No text annotation Not in a motif group | ||
| IL_4LT8_244 | 1/YA/280:284, 1/YA/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 IL_04059.1 | |
| IL_4LT8_245 | 1/YA/288:290, 1/YA/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_4LT8_246 | 1/YA/293:295, 1/YA/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 IL_69440.1 | |
| IL_4LT8_247 | 1/YA/481:484, 1/YA/496:509 | No text annotation Not in a motif group | geometric IL_7RQB_014 IL_60992.6 | |
| IL_4LT8_248 | 1/YA/564:566, 1/YA/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 IL_95997.1 | |
| IL_4LT8_249 | 1/YA/606:609A, 1/YA/618A:622 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_4LT8_250 | 1/YA/672:674, 1/YA/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 IL_95997.1 | |
| IL_4LT8_251 | 1/YA/674:678, 1/YA/799:806 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_4LT8_252 | 1/YA/697:698, 1/YA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 IL_37497.2 | |
| IL_4LT8_253 | 1/YA/702:703, 1/YA/728:730 | Single bulged G Not in a motif group | homologous IL_7RQB_020 IL_00225.2 | |
| IL_4LT8_254 | 1/YA/703:707, 1/YA/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_4LT8_255 | 1/YA/738:741, 1/YA/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 IL_05564.2 | |
| IL_4LT8_256 | 1/YA/775:777, 1/YA/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 IL_90991.6 | |
| IL_4LT8_257 | 1/YA/837:838, 1/YA/940:942 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_92001.1 | |
| IL_4LT8_258 | 1/YA/844:846, 1/YA/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_4LT8_259 | 1/YA/846:850, 1/YA/928:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_4LT8_260 | 1/YA/858:862, 1/YA/915:919 | No text annotation Not in a motif group | ||
| IL_4LT8_261 | 1/YA/862:863, 1/YA/913:915 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_4LT8_262 | 1/YA/864:868, 1/YA/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_4LT8_263 | 1/YA/870:872, 1/YA/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 IL_52767.2 | |
| IL_4LT8_264 | 1/YA/875:879, 1/YA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.8 | |
| IL_4LT8_265 | 1/YA/880:881, 1/YA/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_4LT8_266 | 1/YA/952:954, 1/YA/963:965 | No text annotation Not in a motif group | homologous IL_7RQB_034 IL_95997.1 | |
| IL_4LT8_267 | 1/YA/994:996, 1/YA/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_4LT8_268 | 1/YA/998:1002, 1/YA/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_4LT8_269 | 1/YA/1004:1011, 1/YA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.7 | |
| IL_4LT8_270 | 1/YA/1011:1013, 1/YA/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 IL_83039.13 | |
| IL_4LT8_271 | 1/YA/1018:1024, 1/YA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_4LT8_272 | 1/YA/1024:1030, 1/YA/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_4LT8_273 | 1/YA/1031:1034, 1/YA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_4LT8_274 | 1/YA/1043:1051, 1/YA/1108:1112 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_4LT8_276 | 1/YA/1087:1091, 1/YA/1100:1102 | Major groove platform with extra cWW Not in a motif group | geometric IL_5D8H_003 IL_05564.2 | |
| IL_4LT8_277 | 1/YA/1196:1198, 1/YA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 IL_52767.2 | |
| IL_4LT8_278 | 1/YA/1202:1206, 1/YA/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_4LT8_279 | 1/YA/1208:1215, 1/YA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_4LT8_280 | 1/YA/1219:1221, 1/YA/1229A:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_4LT8_281 | 1/YA/1262:1269, 1/YA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_4LT8_282 | 1/YA/1310:1313, 1/YA/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_4LT8_283 | 1/YA/1319:1323, 1/YA/1331:1333 | C-loop Not in a motif group | homologous IL_7RQB_051 IL_63596.6 | |
| IL_4LT8_284 | 1/YA/1351:1355, 1/YA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_4LT8_285 | 1/YA/1357:1361, 1/YA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_4LT8_286 | 1/YA/1415:1416, 1/YA/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_4LT8_287 | 1/YA/1417:1421, 1/YA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_4LT8_288 | 1/YA/1433:1435, 1/YA/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_4LT8_289 | 1/YA/1437:1440, 1/YA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_4LT8_291 | 1/YA/1450:1451, 1/YA/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_4LT8_292 | 1/YA/1469:1473, 1/YA/1520:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_4LT8_293 | 1/YA/1482:1483, 1/YA/1506:1512 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_4LT8_294 | 1/YA/1489:1491, 1/YA/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_4LT8_295 | 1/YA/1526:1530, 1/YA/1541:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 IL_02656.1 | |
| IL_4LT8_296 | 1/YA/1651:1656, 1/YA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 IL_12566.2 | |
| IL_4LT8_297 | 1/YA/1663:1665, 1/YA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_4LT8_298 | 1/YA/1666:1669, 1/YA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_50694.2 | |
| IL_4LT8_299 | 1/YA/1669:1674, 1/YA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_7RQB_067 IL_82842.2 | |
| IL_4LT8_300 | 1/YA/1686:1691, 1/YA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_4LT8_301 | 1/YA/1770:1771, 1/YA/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_4LT8_302 | 1/YA/1798:1804, 1/YA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_4LT8_303 | 1/YA/1837:1840, 1/YA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 IL_88739.1 | |
| IL_4LT8_304 | 1/YA/1841:1842, 1/YA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_4LT8_305 | 1/YA/1846:1849, 1/YA/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_4LT8_306 | 1/YA/1851:1855, 1/YA/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_4LT8_307 | 1/YA/1856:1860, 1/YA/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_4LT8_308 | 1/YA/1933:1934, 1/YA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_4LT8_309 | 1/YA/1934:1945, 1/YA/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_81589.2 | |
| IL_4LT8_310 | 1/YA/2050:2052, 1/YA/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_4LT8_311 | 1/YA/2054:2057, 1/YA/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 IL_01206.1 | |
| IL_4LT8_312 | 1/YA/2067:2069, 1/YA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4LT8_313 | 1/YA/2070:2071, 1/YA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_42622.2 | |
| IL_4LT8_314 | 1/YA/2081:2083, 1/YA/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_4LT8_315 | 1/YA/2085:2087, 1/YA/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_4LT8_320 | 1/YA/2297:2299, 1/YA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_4LT8_321 | 1/YA/2350:2353, 1/YA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_4LT8_322 | 1/YA/2401:2403, 1/YA/2414:2415 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_4LT8_323 | 1/YA/2453:2454, 1/YA/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_4LT8_324 | 1/YA/2454:2455, 1/YA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_4LT8_325 | 1/YA/2457:2459, 1/YA/2493:2494 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_4LT8_326 | 1/YA/2459:2461, 1/YA/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_4LT8_327 | 1/YA/2466:2470, 1/YA/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_4LT8_328 | 1/YA/2507:2508, 1/YA/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 IL_76223.2 | |
| IL_4LT8_329 | 1/YA/2510:2512, 1/YA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7RQB_097 IL_90933.2 | |
| IL_4LT8_330 | 1/YA/2512:2513, 1/YA/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_4LT8_331 | 1/YA/2522:2523, 1/YA/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_4LT8_332 | 1/YA/2591:2592, 1/YA/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_37497.2 | |
| IL_4LT8_333 | 1/YA/2636:2640, 1/YA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_04638.1 | |
| IL_4LT8_334 | 1/YA/2652:2658, 1/YA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7RQB_103 IL_16458.1 | |
| IL_4LT8_335 | 1/YA/2680:2684, 1/YA/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_4LT8_336 | 1/YA/2687:2691, 1/YA/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_4LT8_337 | 1/YA/2695:2696, 1/YA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 IL_71530.2 | |
| IL_4LT8_338 | 1/YA/2737:2742, 1/YA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 IL_49767.5 | |
| IL_4LT8_339 | 1/YA/2838:2839, 1/YA/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_4LT8_340 | 1/YA/2843:2846, 1/YA/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_4LT8_341 | 1/YA/2847:2852, 1/YA/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_4LT8_342 | 1/YB/17:18, 1/YB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 IL_37497.2 | |
| IL_4LT8_343 | 1/YB/23:28, 1/YB/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4LT8_344 | 1/YB/30:32, 1/YB/50:54 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4LT8_345 | 1/YB/34:38, 1/YB/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_4LT8_346 | 1/YB/71:79, 1/YB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4LT8_005 | Multiple bulged bases | ||
| IL_4LT8_006 | No text annotation | ||
| IL_4LT8_010 | No text annotation | ||
| IL_4LT8_035 | Single bulged A | ||
| IL_4LT8_040 | Isolated cWS basepair | ||
| IL_4LT8_041 | Minor groove platform | ||
| IL_4LT8_086 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4LT8_087 | Minor groove platform | ||
| IL_4LT8_090 | Triple sheared | ||
| IL_4LT8_099 | Isolated non-canonical cWW with bulges | ||
| IL_4LT8_101 | No text annotation | ||
| IL_4LT8_102 | No text annotation | ||
| IL_4LT8_116 | Single stack bend | ||
| IL_4LT8_143 | No text annotation | ||
| IL_4LT8_144 | No text annotation | ||
| IL_4LT8_145 | Kink-turn | ||
| IL_4LT8_157 | Minor groove platform with intercalation | ||
| IL_4LT8_177 | Multiple bulged bases | ||
| IL_4LT8_178 | No text annotation | ||
| IL_4LT8_181 | tWH-tWH-tHW-tHW | ||
| IL_4LT8_182 | No text annotation | ||
| IL_4LT8_186 | Single bulged U | ||
| IL_4LT8_187 | C-loop | ||
| IL_4LT8_242 | Major groove platform | ||
| IL_4LT8_275 | No text annotation | ||
| IL_4LT8_290 | Single stack bend | ||
| IL_4LT8_316 | No text annotation | ||
| IL_4LT8_317 | Multiple bulged bases | ||
| IL_4LT8_318 | No text annotation | ||
| IL_4LT8_319 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4LT8_001 | 1/QA/46:47, 1/QA/361:367, 1/QA/393:395 | No text annotation Not in a motif group | ||
| J3_4LT8_002 | 1/QA/586:588, 1/QA/651:654, 1/QA/754:755 | No text annotation Not in a motif group | ||
| J3_4LT8_003 | 1/QA/672:673, 1/QA/717:725, 1/QA/732:734 | No text annotation Not in a motif group | ||
| J3_4LT8_004 | 1/QA/826:829, 1/QA/857:861, 1/QA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4LT8_005 | 1/QA/936:939, 1/QA/1344:1350, 1/QA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4LT8_006 | 1/QA/943:946, 1/QA/1235:1237, 1/QA/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_4LT8_007 | 1/QA/955:962, 1/QA/973:984, 1/QA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4LT8_008 | 1/QA/990:997, 1/QA/1044:1047, 1/QA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4LT8_010 | 1/QA/1063:1068, 1/QA/1107:1113, 1/QA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4LT8_011 | 1/QA/1073:1074, 1/QA/1083:1087, 1/QA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4LT8_012 | 1/QA/1116:1118, 1/QA/1155:1161, 1/QA/1175:1184 | No text annotation Not in a motif group | ||
| J3_4LT8_013 | 1/QA/1237:1241, 1/QA/1296:1303, 1/QA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4LT8_014 | 1/RA/30:31, 1/RA/474:481, 1/RA/509:510 | No text annotation Not in a motif group | ||
| J3_4LT8_015 | 1/RA/56:57, 1/RA/70:76, 1/RA/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_4LT8_016 | 1/RA/269:270C, 1/RA/270W:271, 1/RA/366:370 | No text annotation Not in a motif group | ||
| J3_4LT8_017 | 1/RA/683:689, 1/RA/773:775, 1/RA/791:794 | No text annotation Not in a motif group | ||
| J3_4LT8_018 | 1/RA/698:700, 1/RA/732:736, 1/RA/760:763 | No text annotation Not in a motif group | ||
| J3_4LT8_020 | 1/RA/1298:1303, 1/RA/1625:1627, 1/RA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4LT8_021 | 1/RA/1306:1309, 1/RA/1605:1611, 1/RA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4LT8_022 | 1/RA/1344:1350, 1/RA/1381:1385, 1/RA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_4LT8_023 | 1/RA/2091:2093, 1/RA/2196:2205, 1/RA/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4LT8_024 | 1/RA/2295:2297, 1/RA/2321:2323, 1/RA/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_4LT8_025 | 1/RA/2517:2520, 1/RA/2545:2547, 1/RA/2561:2567 | No text annotation Not in a motif group | ||
| J3_4LT8_026 | 1/RA/2789:2791, 1/RA/2805:2811, 1/RA/2889:2894 | No text annotation Not in a motif group | ||
| J3_4LT8_027 | 1/RA/2814:2815, 1/RA/2831:2836, 1/RA/2882:2886 | No text annotation Not in a motif group | homologous J3_7RQB_014 NA | |
| J3_4LT8_028 | 1/RB/11:16, 1/RB/68:69, 1/RB/107:109 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA | |
| J3_4LT8_029 | 1/XA/46:47, 1/XA/361:367, 1/XA/393:395 | No text annotation Not in a motif group | ||
| J3_4LT8_030 | 1/XA/586:588, 1/XA/651:654, 1/XA/754:755 | No text annotation Not in a motif group | ||
| J3_4LT8_031 | 1/XA/672:673, 1/XA/717:725, 1/XA/732:734 | No text annotation Not in a motif group | homologous J3_6CZR_017 NA | |
| J3_4LT8_032 | 1/XA/826:829, 1/XA/857:861, 1/XA/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4LT8_033 | 1/XA/936:939, 1/XA/1344:1350, 1/XA/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4LT8_034 | 1/XA/943:946, 1/XA/1235:1237, 1/XA/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_4LT8_035 | 1/XA/955:962, 1/XA/973:984, 1/XA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4LT8_036 | 1/XA/990:993, 1/XA/1045:1047, 1/XA/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4LT8_038 | 1/XA/1063:1068, 1/XA/1107:1113, 1/XA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4LT8_039 | 1/XA/1073:1074, 1/XA/1083:1087, 1/XA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4LT8_040 | 1/XA/1116:1118, 1/XA/1155:1161, 1/XA/1175:1184 | No text annotation Not in a motif group | ||
| J3_4LT8_041 | 1/XA/1237:1241, 1/XA/1296:1303, 1/XA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4LT8_042 | 1/YA/30:31, 1/YA/474:481, 1/YA/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_4LT8_043 | 1/YA/56:57, 1/YA/70:76, 1/YA/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_4LT8_044 | 1/YA/269:270C, 1/YA/270W:271, 1/YA/366:370 | No text annotation Not in a motif group | ||
| J3_4LT8_045 | 1/YA/683:689, 1/YA/773:775, 1/YA/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_4LT8_046 | 1/YA/698:700, 1/YA/732:736, 1/YA/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4LT8_047 | 1/YA/1055:1057, 1/YA/1081:1087, 1/YA/1102:1104 | No text annotation Not in a motif group | ||
| J3_4LT8_048 | 1/YA/1298:1303, 1/YA/1625:1627, 1/YA/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4LT8_049 | 1/YA/1306:1309, 1/YA/1605:1611, 1/YA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4LT8_050 | 1/YA/1344:1350, 1/YA/1381:1385, 1/YA/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_4LT8_051 | 1/YA/2091:2093, 1/YA/2196:2205, 1/YA/2219:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4LT8_052 | 1/YA/2295:2297, 1/YA/2321:2323, 1/YA/2332:2337 | No text annotation Not in a motif group | ||
| J3_4LT8_053 | 1/YA/2517:2520, 1/YA/2545:2547, 1/YA/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4LT8_054 | 1/YA/2789:2792, 1/YA/2804:2811, 1/YA/2889:2894 | No text annotation Not in a motif group | ||
| J3_4LT8_055 | 1/YA/2814:2815, 1/YA/2831:2836, 1/YA/2882:2886 | No text annotation Not in a motif group | ||
| J3_4LT8_056 | 1/YB/11:16, 1/YB/68:69, 1/YB/107:109 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4LT8_009 | No text annotation | ||
| J3_4LT8_019 | No text annotation | ||
| J3_4LT8_037 | No text annotation |
Coloring options: