4WCE Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4WCE_001 | 1/X/58:69 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_18177.1 | |
| HL_4WCE_002 | 1/X/87:95 | No text annotation Not in a motif group | homologous HL_4WF9_002 HL_96598.1 | |
| HL_4WCE_003 | 1/X/122:127 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_4WCE_004 | 1/X/134:145 | No text annotation Not in a motif group | ||
| HL_4WCE_006 | 1/X/197:204 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_4WCE_007 | 1/X/228:233 | No text annotation Not in a motif group | homologous HL_4WF9_007 HL_02862.2 | |
| HL_4WCE_008 | 1/X/249:255 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.7 | |
| HL_4WCE_009 | 1/X/283:288 | No text annotation Not in a motif group | geometric HL_4WF9_009 HL_09829.1 | |
| HL_4WCE_010 | 1/X/348:355 | T-loop with 1 bulged base Not in a motif group | homologous HL_4WF9_010 HL_89380.2 | |
| HL_4WCE_011 | 1/X/362:366 | No text annotation Not in a motif group | homologous HL_4WF9_011 HL_75407.1 | |
| HL_4WCE_012 | 1/X/370:378 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.8 | |
| HL_4WCE_013 | 1/X/427:439 | No text annotation Not in a motif group | ||
| HL_4WCE_014 | 1/X/456:463 | No text annotation Not in a motif group | homologous HL_4WF9_014 HL_96598.1 | |
| HL_4WCE_015 | 1/X/508:513 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_42097.1 | |
| HL_4WCE_016 | 1/X/533:538 | GNRA Not in a motif group | homologous HL_4WF9_016 HL_42097.1 | |
| HL_4WCE_017 | 1/X/587:594 | No text annotation Not in a motif group | homologous HL_4WF9_017 HL_50318.1 | |
| HL_4WCE_018 | 1/X/609:618 | T-loop with 2 stacked bulged bases Not in a motif group | geometric HL_4WF9_018 HL_89380.2 | |
| HL_4WCE_019 | 1/X/654:662 | No text annotation Not in a motif group | homologous HL_4WF9_019 HL_22280.1 | |
| HL_4WCE_020 | 1/X/674:679 | GNRA Not in a motif group | homologous HL_4WF9_020 HL_42097.1 | |
| HL_4WCE_023 | 1/X/789:798 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.6 | |
| HL_4WCE_024 | 1/X/823:831 | No text annotation Not in a motif group | ||
| HL_4WCE_025 | 1/X/871:876 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_4WCE_027 | 1/X/999:1006 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_42097.1 | |
| HL_4WCE_028 | 1/X/1022:1029 | No text annotation Not in a motif group | homologous HL_4WF9_028 HL_64430.2 | |
| HL_4WCE_031 | 1/X/1260:1265 | No text annotation Not in a motif group | homologous HL_4WF9_031 HL_87030.2 | |
| HL_4WCE_032 | 1/X/1318:1326 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_032 HL_89380.2 | |
| HL_4WCE_033 | 1/X/1361:1367 | No text annotation Not in a motif group | homologous HL_7RQB_034 HL_46680.1 | |
| HL_4WCE_034 | 1/X/1400:1405 | Other HL Not in a motif group | homologous HL_4WF9_034 HL_87030.2 | |
| HL_4WCE_035 | 1/X/1426:1435 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_69023.2 | |
| HL_4WCE_037 | 1/X/1612:1615 | No text annotation Not in a motif group | homologous HL_4WF9_037 HL_94803.1 | |
| HL_4WCE_038 | 1/X/1656:1663 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_64430.2 | |
| HL_4WCE_039 | 1/X/1673:1681 | No text annotation Not in a motif group | homologous HL_4WF9_039 HL_92229.2 | |
| HL_4WCE_040 | 1/X/1735:1740 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_4WCE_041 | 1/X/1761:1768 | No text annotation Not in a motif group | homologous HL_4WF9_041 HL_49288.1 | |
| HL_4WCE_042 | 1/X/1779:1783 | No text annotation Not in a motif group | homologous HL_4WF9_042 HL_76539.2 | |
| HL_4WCE_043 | 1/X/1804:1814 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.5 | |
| HL_4WCE_046 | 1/X/1976:1984 | No text annotation Not in a motif group | homologous HL_4WF9_046 HL_51824.1 | |
| HL_4WCE_047 | 1/X/2054:2063 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.6 | |
| HL_4WCE_048 | 1/X/2236:2242 | No text annotation Not in a motif group | homologous HL_4WF9_048 HL_16845.6 | |
| HL_4WCE_049 | 1/X/2275:2283 | No text annotation Not in a motif group | homologous HL_4WF9_049 HL_53171.2 | |
| HL_4WCE_050 | 1/X/2291:2303 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_4WCE_052 | 1/X/2351:2358 | No text annotation Not in a motif group | homologous HL_4WF9_052 HL_12078.2 | |
| HL_4WCE_053 | 1/X/2382:2389 | No text annotation Not in a motif group | homologous HL_4WF9_053 HL_09136.1 | |
| HL_4WCE_054 | 1/X/2401:2406 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_42097.1 | |
| HL_4WCE_055 | 1/X/2431:2440 | No text annotation Not in a motif group | homologous HL_4WF9_055 HL_30784.2 | |
| HL_4WCE_056 | 1/X/2498:2506 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.2 | |
| HL_4WCE_057 | 1/X/2555:2562 | No text annotation Not in a motif group | homologous HL_4WF9_057 HL_88526.2 | |
| HL_4WCE_058 | 1/X/2578:2584 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_4WCE_059 | 1/X/2621:2626 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_4WCE_060 | 1/X/2685:2690 | No text annotation Not in a motif group | homologous HL_7RQB_064 HL_42097.1 | |
| HL_4WCE_061 | 1/X/2728:2733 | Ribsomal LSU H95 Not in a motif group | homologous HL_4WF9_061 HL_46680.1 | |
| HL_4WCE_062 | 1/X/2772:2786 | No text annotation Not in a motif group | homologous HL_4WF9_062 HL_56677.7 | |
| HL_4WCE_064 | 1/X/2839:2847 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_4WCE_065 | 1/X/2876:2881 | Other HL Not in a motif group | homologous HL_4WF9_065 HL_42097.1 | |
| HL_4WCE_066 | 1/Y/36:42 | No text annotation Not in a motif group | homologous HL_4WF9_066 HL_87939.1 | |
| HL_4WCE_067 | 1/Y/77:94 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4WCE_005 | No text annotation | ||
| HL_4WCE_021 | GNRA with one bulged base | ||
| HL_4WCE_022 | No text annotation | ||
| HL_4WCE_026 | No text annotation | ||
| HL_4WCE_029 | No text annotation | ||
| HL_4WCE_030 | No text annotation | ||
| HL_4WCE_036 | No text annotation | ||
| HL_4WCE_044 | No text annotation | ||
| HL_4WCE_045 | No text annotation | ||
| HL_4WCE_051 | No text annotation | ||
| HL_4WCE_063 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4WCE_001 | 1/X/24:30, 1/X/555:561 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_4WCE_002 | 1/X/36:37, 1/X/488:490 | Single bulged A Not in a motif group | homologous IL_4WF9_002 IL_37497.2 | |
| IL_4WCE_003 | 1/X/42:44, 1/X/480:483 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_65006.1 | |
| IL_4WCE_004 | 1/X/81:85, 1/X/97:104 | Kink-turn Not in a motif group | homologous IL_4WF9_004 IL_45067.2 | |
| IL_4WCE_005 | 1/X/152:153, 1/X/175:177 | Single bulged A Not in a motif group | homologous IL_4WF9_006 IL_37497.2 | |
| IL_4WCE_007 | 1/X/186:187, 1/X/215:217 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_4WCE_008 | 1/X/190:197, 1/X/204:212 | 9x8 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_008 IL_35728.2 | |
| IL_4WCE_009 | 1/X/241:248, 1/X/256:262 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_009 IL_04346.7 | |
| IL_4WCE_012 | 1/X/304:306, 1/X/409:413 | No text annotation Not in a motif group | ||
| IL_4WCE_013 | 1/X/336:338, 1/X/386:390 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.1 | |
| IL_4WCE_014 | 1/X/527:530, 1/X/541:554 | No text annotation Not in a motif group | homologous IL_4WF9_015 IL_60992.6 | |
| IL_4WCE_015 | 1/X/581:584, 1/X/597:600 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.9 | |
| IL_4WCE_016 | 1/X/607:609, 1/X/618:620 | No text annotation Not in a motif group | homologous IL_4WF9_017 IL_95997.1 | |
| IL_4WCE_017 | 1/X/638:640, 1/X/705:707 | No text annotation Not in a motif group | homologous IL_4WF9_018 IL_51629.2 | |
| IL_4WCE_018 | 1/X/649:653, 1/X/663:667 | AAA cross-strand stack Not in a motif group | homologous IL_4WF9_019 IL_17136.1 | |
| IL_4WCE_019 | 1/X/717:719, 1/X/851:853 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 | |
| IL_4WCE_020 | 1/X/719:723, 1/X/844:851 | tHW-tHW cross-strand stack Not in a motif group | homologous IL_4WF9_021 IL_17470.6 | |
| IL_4WCE_021 | 1/X/742:743, 1/X/808:810 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_37497.2 | |
| IL_4WCE_022 | 1/X/747:748, 1/X/773:775 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.2 | |
| IL_4WCE_023 | 1/X/748:752, 1/X/769:773 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_4WCE_024 | 1/X/783:785, 1/X/802:803 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_27635.1 | |
| IL_4WCE_025 | 1/X/820:822, 1/X/832:836 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.6 | |
| IL_4WCE_026 | 1/X/882:883, 1/X/984:986 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_92001.1 | |
| IL_4WCE_027 | 1/X/889:893, 1/X/975:978 | No text annotation Not in a motif group | homologous IL_4WF9_029 IL_06300.1 | |
| IL_4WCE_028 | 1/X/897:898, 1/X/969:971 | Single bulged U Not in a motif group | homologous IL_4WF9_030 IL_83039.13 | |
| IL_4WCE_029 | 1/X/901:907, 1/X/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4WF9_031 IL_93830.3 | |
| IL_4WCE_030 | 1/X/907:908, 1/X/958:960 | Minor groove platform Not in a motif group | homologous IL_4WF9_032 IL_42622.2 | |
| IL_4WCE_031 | 1/X/909:913, 1/X/954:957 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.1 | |
| IL_4WCE_032 | 1/X/915:917, 1/X/950:952 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_034 IL_52767.2 | |
| IL_4WCE_033 | 1/X/1038:1040, 1/X/1203:1204 | Single bulged C Not in a motif group | homologous IL_4WF9_035 IL_61258.12 | |
| IL_4WCE_034 | 1/X/1042:1046, 1/X/1197:1201 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_89002.2 | |
| IL_4WCE_035 | 1/X/1048:1055, 1/X/1194:1195 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4WF9_037 IL_15861.7 | |
| IL_4WCE_036 | 1/X/1055:1057, 1/X/1193:1194 | Single bulged U Not in a motif group | geometric IL_4WF9_038 IL_83039.13 | |
| IL_4WCE_037 | 1/X/1062:1068, 1/X/1184:1188 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_4WCE_038 | 1/X/1068:1074, 1/X/1168:1184 | No text annotation Not in a motif group | geometric IL_4WF9_040 IL_50715.1 | |
| IL_4WCE_039 | 1/X/1075:1078, 1/X/1165:1167 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_041 IL_82068.2 | |
| IL_4WCE_040 | 1/X/1081:1083, 1/X/1160:1162 | No text annotation Not in a motif group | homologous IL_4WF9_042 IL_95997.1 | |
| IL_4WCE_041 | 1/X/1087:1095, 1/X/1152:1156 | Kink-turn Not in a motif group | homologous IL_5J7L_284 IL_90538.4 | |
| IL_4WCE_042 | 1/X/1235:1237, 1/X/1285:1288 | Isolated cWS basepair Not in a motif group | homologous IL_4WF9_044 IL_52767.2 | |
| IL_4WCE_043 | 1/X/1243:1245, 1/X/1277:1279 | Isolated cWH basepair Not in a motif group | homologous IL_4WF9_045 IL_51629.2 | |
| IL_4WCE_044 | 1/X/1246:1253, 1/X/1272:1276 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_70923.2 | |
| IL_4WCE_045 | 1/X/1257:1259, 1/X/1266:1268 | Intercalated cWW Not in a motif group | homologous IL_4WF9_047 IL_82842.2 | |
| IL_4WCE_046 | 1/X/1300:1307, 1/X/2038:2044 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4WF9_048 IL_04346.7 | |
| IL_4WCE_047 | 1/X/1347:1350, 1/X/1647:1648 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_049 IL_50694.2 | |
| IL_4WCE_048 | 1/X/1356:1360, 1/X/1368:1370 | Major groove minor groove platform with tHH Not in a motif group | homologous IL_4WF9_050 IL_37712.2 | |
| IL_4WCE_049 | 1/X/1388:1392, 1/X/1413:1417 | UAA/GAN Not in a motif group | homologous IL_4WF9_051 IL_89002.2 | |
| IL_4WCE_050 | 1/X/1394:1398, 1/X/1407:1411 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.1 | |
| IL_4WCE_051 | 1/X/1461:1465, 1/X/1624:1627 | Other IL Not in a motif group | geometric IL_4WF9_054 IL_04059.1 | |
| IL_4WCE_052 | 1/X/1465:1467, 1/X/1622:1624 | No text annotation Not in a motif group | homologous IL_4WF9_055 IL_95997.1 | |
| IL_4WCE_053 | 1/X/1476:1480, 1/X/1604:1608 | No text annotation Not in a motif group | ||
| IL_4WCE_054 | 1/X/1481:1485, 1/X/1598:1603 | No text annotation Not in a motif group | ||
| IL_4WCE_056 | 1/X/1511:1516, 1/X/1564:1570 | No text annotation Not in a motif group | geometric IL_4WF9_058 IL_88190.1 | |
| IL_4WCE_062 | 1/X/1695:1700, 1/X/2031:2033 | No text annotation Not in a motif group | homologous IL_4WF9_062 IL_12566.2 | |
| IL_4WCE_063 | 1/X/1707:1709, 1/X/2022:2024 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.7 | |
| IL_4WCE_064 | 1/X/1710:1713, 1/X/2020:2021 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.2 | |
| IL_4WCE_065 | 1/X/1713:1718, 1/X/2017:2020 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_82842.2 | |
| IL_4WCE_066 | 1/X/1730:1735, 1/X/1740:1746 | No text annotation Not in a motif group | geometric IL_4WF9_066 IL_65969.2 | |
| IL_4WCE_067 | 1/X/1755:1761, 1/X/1768:1774 | No text annotation Not in a motif group | ||
| IL_4WCE_068 | 1/X/1797:1798, 1/X/2007:2009 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.2 | |
| IL_4WCE_069 | 1/X/1825:1831, 1/X/1840:1848 | Kink-turn related Not in a motif group | homologous IL_4WF9_069 IL_17069.3 | |
| IL_4WCE_071 | 1/X/1868:1869, 1/X/1925:1928 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_16396.2 | |
| IL_4WCE_073 | 1/X/1878:1882, 1/X/1914:1918 | UAA/GAN with extra pair Not in a motif group | homologous IL_4WF9_073 IL_90318.1 | |
| IL_4WCE_074 | 1/X/1883:1888, 1/X/1908:1913 | No text annotation Not in a motif group | ||
| IL_4WCE_075 | 1/X/1888:1890, 1/X/1906:1908 | No text annotation Not in a motif group | geometric IL_1NBS_006 IL_95997.1 | |
| IL_4WCE_076 | 1/X/1891:1894, 1/X/1901:1905 | UAA/GAN Not in a motif group | homologous IL_4WF9_075 IL_77691.1 | |
| IL_4WCE_077 | 1/X/1960:1961, 1/X/1991:1994 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_59677.2 | |
| IL_4WCE_078 | 1/X/1961:1972, 1/X/1988:1991 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4WCE_079 | 1/X/2077:2079, 1/X/2644:2645 | Major groove platform Not in a motif group | homologous IL_4WF9_078 IL_27635.1 | |
| IL_4WCE_080 | 1/X/2081:2083, 1/X/2639:2642 | No text annotation Not in a motif group | homologous IL_4WF9_079 IL_54678.5 | |
| IL_4WCE_081 | 1/X/2094:2096, 1/X/2469:2470 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_4WCE_082 | 1/X/2097:2098, 1/X/2465:2468 | Minor groove platform Not in a motif group | homologous IL_4WF9_081 IL_42622.2 | |
| IL_4WCE_083 | 1/X/2108:2110, 1/X/2263:2266 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_4WF9_082 IL_38958.7 | |
| IL_4WCE_084 | 1/X/2111:2113, 1/X/2260:2262 | No text annotation Not in a motif group | homologous IL_4WF9_083 IL_95997.1 | |
| IL_4WCE_086 | 1/X/2123:2126, 1/X/2217:2220 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_4WCE_087 | 1/X/2229:2232, 1/X/2246:2248 | No text annotation Not in a motif group | geometric IL_1XJR_003 IL_10023.1 | |
| IL_4WCE_088 | 1/X/2324:2326, 1/X/2344:2348 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_4WF9_086 IL_38958.7 | |
| IL_4WCE_089 | 1/X/2377:2380, 1/X/2391:2394 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.9 | |
| IL_4WCE_090 | 1/X/2428:2430, 1/X/2441:2442 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_83039.13 | |
| IL_4WCE_091 | 1/X/2480:2481, 1/X/2525:2527 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_76488.2 | |
| IL_4WCE_092 | 1/X/2481:2482, 1/X/2523:2525 | Major groove platform Not in a motif group | homologous IL_4WF9_090 IL_27635.1 | |
| IL_4WCE_093 | 1/X/2484:2486, 1/X/2520:2521 | Major groove platform Not in a motif group | geometric IL_4WF9_091 IL_27635.1 | |
| IL_4WCE_094 | 1/X/2486:2488, 1/X/2516:2520 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_092 IL_92788.2 | |
| IL_4WCE_095 | 1/X/2493:2497, 1/X/2507:2511 | Triple sheared Not in a motif group | homologous IL_4WF9_093 IL_56467.8 | |
| IL_4WCE_096 | 1/X/2534:2535, 1/X/2607:2609 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_76223.2 | |
| IL_4WCE_097 | 1/X/2537:2539, 1/X/2601:2605 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_4WF9_095 IL_90933.2 | |
| IL_4WCE_098 | 1/X/2539:2540, 1/X/2598:2601 | No text annotation Not in a motif group | geometric IL_4WF9_096 IL_71530.2 | |
| IL_4WCE_099 | 1/X/2549:2550, 1/X/2567:2570 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 IL_95601.3 | |
| IL_4WCE_100 | 1/X/2618:2619, 1/X/2628:2630 | Single bulged A Not in a motif group | homologous IL_4WF9_098 IL_69996.1 | |
| IL_4WCE_101 | 1/X/2663:2667, 1/X/2801:2809 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.1 | |
| IL_4WCE_102 | 1/X/2675:2677, 1/X/2697:2699 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
| IL_4WCE_103 | 1/X/2679:2685, 1/X/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_4WF9_100 IL_16458.1 | |
| IL_4WCE_104 | 1/X/2707:2711, 1/X/2752:2754 | C-loop Not in a motif group | homologous IL_4WF9_101 IL_63596.6 | |
| IL_4WCE_105 | 1/X/2714:2718, 1/X/2745:2749 | No text annotation Not in a motif group | homologous IL_4WF9_102 IL_08296.3 | |
| IL_4WCE_106 | 1/X/2722:2723, 1/X/2738:2741 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_71530.2 | |
| IL_4WCE_107 | 1/X/2764:2769, 1/X/2789:2794 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.5 | |
| IL_4WCE_108 | 1/X/2858:2859, 1/X/2898:2900 | Major groove intercalation Not in a motif group | homologous IL_4WF9_106 IL_16396.2 | |
| IL_4WCE_109 | 1/X/2863:2865, 1/X/2891:2894 | No text annotation Not in a motif group | homologous IL_4WF9_107 IL_02284.5 | |
| IL_4WCE_110 | 1/X/2867:2872, 1/X/2885:2889 | No text annotation Not in a motif group | homologous IL_4WF9_108 IL_83162.5 | |
| IL_4WCE_111 | 1/Y/2:5, 1/Y/110:113 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4WF9_109 IL_30621.2 | |
| IL_4WCE_112 | 1/Y/5:8, 1/Y/107:110 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4WF9_110 IL_67743.1 | |
| IL_4WCE_113 | 1/Y/15:16, 1/Y/63:65 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_4WCE_114 | 1/Y/17:19, 1/Y/60:62 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_4WCE_115 | 1/Y/20:27, 1/Y/53:59 | No text annotation Not in a motif group | homologous IL_4WF9_113 IL_19048.1 | |
| IL_4WCE_116 | 1/Y/28:30, 1/Y/48:52 | No text annotation Not in a motif group | homologous IL_4WF9_114 IL_10810.1 | |
| IL_4WCE_117 | 1/Y/32:36, 1/Y/42:46 | Symmetric double minor groove platform Not in a motif group | geometric IL_4WF9_115 IL_58103.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4WCE_006 | No text annotation | ||
| IL_4WCE_010 | No text annotation | ||
| IL_4WCE_011 | No text annotation | ||
| IL_4WCE_055 | No text annotation | ||
| IL_4WCE_057 | No text annotation | ||
| IL_4WCE_058 | No text annotation | ||
| IL_4WCE_059 | No text annotation | ||
| IL_4WCE_060 | No text annotation | ||
| IL_4WCE_061 | No text annotation | ||
| IL_4WCE_070 | No text annotation | ||
| IL_4WCE_072 | No text annotation | ||
| IL_4WCE_085 | UG cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4WCE_001 | 1/X/728:734, 1/X/818:820, 1/X/836:839 | No text annotation Not in a motif group | homologous J3_4WF9_002 NA | |
| J3_4WCE_002 | 1/X/743:745, 1/X/777:781, 1/X/805:808 | No text annotation Not in a motif group | homologous J3_4WF9_003 NA | |
| J3_4WCE_003 | 1/X/1335:1340, 1/X/1669:1671, 1/X/1683:1686 | No text annotation Not in a motif group | homologous J3_4WF9_004 NA | |
| J3_4WCE_004 | 1/X/1342:1346, 1/X/1649:1655, 1/X/1664:1667 | No text annotation Not in a motif group | homologous J3_4WF9_005 NA | |
| J3_4WCE_005 | 1/X/1860:1863, 1/X/1931:1960, 1/X/1994:1999 | No text annotation Not in a motif group | ||
| J3_4WCE_006 | 1/X/2118:2120, 1/X/2223:2228, 1/X/2249:2255 | No text annotation Not in a motif group | homologous J3_4WF9_007 NA | |
| J3_4WCE_007 | 1/X/2322:2324, 1/X/2348:2350, 1/X/2359:2364 | No text annotation Not in a motif group | homologous J3_4WF9_008 NA | |
| J3_4WCE_008 | 1/X/2544:2547, 1/X/2572:2574, 1/X/2588:2594 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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