5UQ7 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5UQ7_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 HL_99167.1 | |
| HL_5UQ7_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 HL_96598.1 | |
| HL_5UQ7_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_75407.1 | |
| HL_5UQ7_004 | 1/A/139A:142B | No text annotation Not in a motif group | homologous HL_7RQB_004 HL_79921.2 | |
| HL_5UQ7_006 | 1/A/194:201 | No text annotation Not in a motif group | geometric HL_4WF9_006 HL_06192.2 | |
| HL_5UQ7_007 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 HL_02862.2 | |
| HL_5UQ7_008 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_7A0S_008 HL_67216.7 | |
| HL_5UQ7_009 | 1/A/272I:272O | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.2 | |
| HL_5UQ7_010 | 1/A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_89380.2 | |
| HL_5UQ7_011 | 1/A/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_75407.1 | |
| HL_5UQ7_012 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 HL_08002.8 | |
| HL_5UQ7_013 | 1/A/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 HL_91503.4 | |
| HL_5UQ7_014 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 HL_96598.1 | |
| HL_5UQ7_015 | 1/A/462:467 | GNRA Not in a motif group | homologous HL_5J7L_147 HL_42097.1 | |
| HL_5UQ7_016 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_7RQB_016 HL_42097.1 | |
| HL_5UQ7_018 | 1/A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WF9_018 HL_89380.2 | |
| HL_5UQ7_019 | 1/A/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 HL_32369.1 | |
| HL_5UQ7_020 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_42097.1 | |
| HL_5UQ7_021 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_42097.1 | |
| HL_5UQ7_023 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 HL_84085.2 | |
| HL_5UQ7_024 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 HL_39334.6 | |
| HL_5UQ7_025 | 1/A/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_74322.1 | |
| HL_5UQ7_026 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_64365.1 | |
| HL_5UQ7_028 | 1/A/955:962 | No text annotation Not in a motif group | homologous HL_7RQB_027 HL_42097.1 | |
| HL_5UQ7_029 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 HL_64430.2 | |
| HL_5UQ7_033 | 1/A/1222:1227 | No text annotation Not in a motif group | homologous HL_7RQB_032 HL_42097.1 | |
| HL_5UQ7_034 | 1/A/1281:1289 | No text annotation Not in a motif group | homologous HL_7RQB_033 HL_89380.2 | |
| HL_5UQ7_035 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_7A0S_033 HL_46680.1 | |
| HL_5UQ7_036 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_87030.2 | |
| HL_5UQ7_037 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 HL_69023.2 | |
| HL_5UQ7_038 | 1/A/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 HL_32426.1 | |
| HL_5UQ7_039 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 HL_46680.1 | |
| HL_5UQ7_041 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_7A0S_039 HL_38927.2 | |
| HL_5UQ7_042 | 1/A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_64430.2 | |
| HL_5UQ7_043 | 1/A/1631A:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 HL_01057.1 | |
| HL_5UQ7_044 | 1/A/1691:1696 | UNCG Not in a motif group | homologous HL_4WF9_040 HL_03562.2 | |
| HL_5UQ7_045 | 1/A/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 HL_43656.2 | |
| HL_5UQ7_046 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 HL_76539.2 | |
| HL_5UQ7_047 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 HL_43613.5 | |
| HL_5UQ7_048 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_7RQB_046 HL_42097.1 | |
| HL_5UQ7_049 | 1/A/1864:1878 | No text annotation Not in a motif group | homologous HL_7RQB_047 HL_42097.1 | |
| HL_5UQ7_050 | 1/A/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_5UQ7_051 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_51824.1 | |
| HL_5UQ7_052 | 1/A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 HL_90642.6 | |
| HL_5UQ7_055 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_5UQ7_056 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.6 | |
| HL_5UQ7_057 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 HL_11805.3 | |
| HL_5UQ7_058 | 1/A/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 HL_12078.2 | |
| HL_5UQ7_059 | 1/A/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 HL_09136.1 | |
| HL_5UQ7_060 | 1/A/2374:2379 | No text annotation Not in a motif group | homologous HL_7RQB_058 HL_42097.1 | |
| HL_5UQ7_061 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 HL_30784.2 | |
| HL_5UQ7_062 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 HL_06192.2 | |
| HL_5UQ7_063 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 HL_88526.2 | |
| HL_5UQ7_064 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_43656.2 | |
| HL_5UQ7_065 | 1/A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_42097.1 | |
| HL_5UQ7_066 | 1/A/2658:2663 | GNRA Not in a motif group | geometric HL_4V9F_066 HL_42097.1 | |
| HL_5UQ7_067 | 1/A/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 HL_53171.2 | |
| HL_5UQ7_068 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.7 | |
| HL_5UQ7_070 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_4WF9_064 HL_27930.1 | |
| HL_5UQ7_071 | 1/A/2856:2861 | No text annotation Not in a motif group | homologous HL_7RQB_069 HL_42097.1 | |
| HL_5UQ7_072 | 1/B/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_87939.1 | |
| HL_5UQ7_073 | 1/B/86:91 | GNRA Not in a motif group | homologous HL_4V9F_072 HL_42097.1 | |
| HL_5UQ7_074 | 1/a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5UQ7_076 | 1/a/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_5UQ7_077 | 1/a/189D:189I | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_5UQ7_078 | 1/a/201:216 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_5UQ7_079 | 1/a/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_5UQ7_080 | 1/a/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_5UQ7_081 | 1/a/320:333 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_5UQ7_082 | 1/a/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_5UQ7_083 | 1/a/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_5UQ7_084 | 1/a/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_5UQ7_085 | 1/a/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_5UQ7_086 | 1/a/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
| HL_5UQ7_087 | 1/a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_5UQ7_088 | 1/a/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_5UQ7_089 | 1/a/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_5UQ7_090 | 1/a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.1 | |
| HL_5UQ7_091 | 1/a/838:848 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_5UQ7_092 | 1/a/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_5UQ7_093 | 1/a/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_42097.1 | |
| HL_5UQ7_094 | 1/a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_5UQ7_095 | 1/a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_5UQ7_096 | 1/a/1029:1032 | No text annotation Not in a motif group | ||
| HL_5UQ7_097 | 1/a/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_5UQ7_098 | 1/a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_5UQ7_099 | 1/a/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_5UQ7_100 | 1/a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_5UQ7_101 | 1/a/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_42097.1 | |
| HL_5UQ7_102 | 1/a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_5UQ7_103 | 1/a/1356:1366 | No text annotation Not in a motif group | ||
| HL_5UQ7_104 | 1/a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_5UQ7_105 | 1/a/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_5UQ7_106 | 1/x/36:42 | No text annotation Not in a motif group | geometric HL_4V9F_005 HL_03562.2 | |
| HL_5UQ7_107 | 1/y/13:22 | No text annotation Not in a motif group | homologous HL_5B63_003 HL_25462.2 | |
| HL_5UQ7_108 | 1/y/31:39 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_5UQ7_109 | 1/y/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4V9Q_215 HL_22280.1 | |
| HL_5UQ7_110 | 1/z/13:22 | No text annotation Not in a motif group | ||
| HL_5UQ7_111 | 1/z/30:40 | No text annotation Not in a motif group | homologous HL_4V7M_039 HL_36684.1 | |
| HL_5UQ7_112 | 1/z/53:61 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_4WJ4_003 HL_22280.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5UQ7_005 | No text annotation | ||
| HL_5UQ7_017 | No text annotation | ||
| HL_5UQ7_022 | No text annotation | ||
| HL_5UQ7_027 | No text annotation | ||
| HL_5UQ7_030 | No text annotation | ||
| HL_5UQ7_031 | No text annotation | ||
| HL_5UQ7_032 | No text annotation | ||
| HL_5UQ7_040 | No text annotation | ||
| HL_5UQ7_053 | UNCG | ||
| HL_5UQ7_054 | No text annotation | ||
| HL_5UQ7_069 | No text annotation | ||
| HL_5UQ7_075 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5UQ7_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.6 | |
| IL_5UQ7_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_37497.2 | |
| IL_5UQ7_003 | 1/A/42:43, 1/A/434:436 | Minor groove platform Not in a motif group | homologous IL_7A0S_003 IL_42622.2 | |
| IL_5UQ7_004 | 1/A/81:85, 1/A/97:105 | Kink-turn Not in a motif group | homologous IL_7RQB_004 IL_45067.2 | |
| IL_5UQ7_005 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_76488.2 | |
| IL_5UQ7_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 IL_04346.7 | |
| IL_5UQ7_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_76042.2 | |
| IL_5UQ7_008 | 1/A/273E:273F, 1/A/363F:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 IL_27635.1 | |
| IL_5UQ7_010 | 1/A/280:284, 1/A/357:360 | tSH-tHW Not in a motif group | geometric IL_7RQB_057 IL_04059.1 | |
| IL_5UQ7_011 | 1/A/288:290, 1/A/350:353 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 IL_38958.7 | |
| IL_5UQ7_012 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_5UQ7_013 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.6 | |
| IL_5UQ7_014 | 1/A/564:566, 1/A/575:577 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_95997.1 | |
| IL_5UQ7_015 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 IL_17136.1 | |
| IL_5UQ7_016 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_95997.1 | |
| IL_5UQ7_017 | 1/A/674:678, 1/A/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.6 | |
| IL_5UQ7_018 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | homologous IL_7A0S_016 IL_37497.2 | |
| IL_5UQ7_019 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_00225.2 | |
| IL_5UQ7_020 | 1/A/703:707, 1/A/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 IL_56467.8 | |
| IL_5UQ7_021 | 1/A/738:741, 1/A/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7A0S_019 IL_05564.2 | |
| IL_5UQ7_022 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_265 IL_90991.6 | |
| IL_5UQ7_023 | 1/A/837:838, 1/A/940:942 | Single stack bend Not in a motif group | homologous IL_4WF9_028 IL_92001.1 | |
| IL_5UQ7_024 | 1/A/844:846, 1/A/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 IL_52767.2 | |
| IL_5UQ7_025 | 1/A/846:850, 1/A/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 IL_94165.1 | |
| IL_5UQ7_026 | 1/A/858:862, 1/A/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_7RQB_027 IL_38862.1 | |
| IL_5UQ7_027 | 1/A/862:863, 1/A/913:915 | Minor groove platform Not in a motif group | homologous IL_7A0S_028 IL_42622.2 | |
| IL_5UQ7_028 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | homologous IL_7RQB_029 IL_02509.1 | |
| IL_5UQ7_029 | 1/A/875:877, 1/A/899:902 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 IL_46796.1 | |
| IL_5UQ7_030 | 1/A/877:879, 1/A/898:899 | Minor groove platform Not in a motif group | geometric IL_2QWY_009 IL_42622.2 | |
| IL_5UQ7_031 | 1/A/880:881, 1/A/895:897 | Single bulged A Not in a motif group | homologous IL_7RQB_033 IL_37497.2 | |
| IL_5UQ7_032 | 1/A/952:954, 1/A/963:965 | No text annotation Not in a motif group | homologous IL_7A0S_031 IL_95997.1 | |
| IL_5UQ7_033 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | homologous IL_7RQB_035 IL_61258.12 | |
| IL_5UQ7_034 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 IL_89002.2 | |
| IL_5UQ7_035 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 IL_15861.7 | |
| IL_5UQ7_036 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | geometric IL_5J7L_279 IL_83039.13 | |
| IL_5UQ7_037 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | geometric IL_7RQB_039 IL_57188.3 | |
| IL_5UQ7_038 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 IL_50715.1 | |
| IL_5UQ7_039 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 IL_82068.2 | |
| IL_5UQ7_044 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.2 | |
| IL_5UQ7_045 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 IL_68574.2 | |
| IL_5UQ7_046 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_70923.2 | |
| IL_5UQ7_047 | 1/A/1219:1221A, 1/A/1229:1230 | Single bulged A Not in a motif group | homologous IL_7RQB_048 IL_37497.2 | |
| IL_5UQ7_048 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 IL_04346.7 | |
| IL_5UQ7_049 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 IL_50694.2 | |
| IL_5UQ7_050 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_63596.6 | |
| IL_5UQ7_051 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 IL_89002.2 | |
| IL_5UQ7_052 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 IL_17136.1 | |
| IL_5UQ7_053 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 IL_67474.4 | |
| IL_5UQ7_054 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 IL_89002.2 | |
| IL_5UQ7_055 | 1/A/1433:1435, 1/A/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 IL_54997.7 | |
| IL_5UQ7_056 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 IL_04059.1 | |
| IL_5UQ7_057 | 1/A/1448:1450A, 1/A/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 IL_76488.2 | |
| IL_5UQ7_058 | 1/A/1450B:1451, 1/A/1459:1461 | Single bulged A Not in a motif group | geometric IL_7RQB_059 IL_37497.2 | |
| IL_5UQ7_059 | 1/A/1469:1473, 1/A/1518:1523 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 IL_07235.1 | |
| IL_5UQ7_060 | 1/A/1481:1482, 1/A/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 IL_52493.1 | |
| IL_5UQ7_061 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 IL_37497.2 | |
| IL_5UQ7_063 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_5UQ7_064 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 IL_54997.7 | |
| IL_5UQ7_065 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_306 IL_50694.2 | |
| IL_5UQ7_066 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_82842.2 | |
| IL_5UQ7_067 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 IL_65969.2 | |
| IL_5UQ7_068 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_7RQB_069 IL_37497.2 | |
| IL_5UQ7_069 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 IL_17069.3 | |
| IL_5UQ7_070 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_88739.1 | |
| IL_5UQ7_071 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 IL_16396.2 | |
| IL_5UQ7_072 | 1/A/1846:1849, 1/A/1893:1894 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 IL_88739.1 | |
| IL_5UQ7_073 | 1/A/1851:1855, 1/A/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 IL_90318.1 | |
| IL_5UQ7_074 | 1/A/1856:1860, 1/A/1882:1886 | Triple sheared Not in a motif group | homologous IL_7RQB_075 IL_56467.8 | |
| IL_5UQ7_075 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_318 IL_59677.2 | |
| IL_5UQ7_076 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | geometric IL_7A0S_072 IL_81589.2 | |
| IL_5UQ7_077 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_27635.1 | |
| IL_5UQ7_078 | 1/A/2054:2057, 1/A/2611:2615 | No text annotation Not in a motif group | homologous IL_7A0S_074 IL_01206.1 | |
| IL_5UQ7_079 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 IL_83039.13 | |
| IL_5UQ7_080 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_4WF9_081 IL_42622.2 | |
| IL_5UQ7_081 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 IL_38958.7 | |
| IL_5UQ7_082 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_95997.1 | |
| IL_5UQ7_088 | 1/A/2297:2299, 1/A/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 IL_38958.7 | |
| IL_5UQ7_089 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 IL_09705.9 | |
| IL_5UQ7_090 | 1/A/2401:2403, 1/A/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 IL_27635.1 | |
| IL_5UQ7_091 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 IL_76488.2 | |
| IL_5UQ7_092 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_27635.1 | |
| IL_5UQ7_093 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform Not in a motif group | geometric IL_3OXE_003 IL_27635.1 | |
| IL_5UQ7_094 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 IL_92788.2 | |
| IL_5UQ7_095 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_7RQB_095 IL_56467.8 | |
| IL_5UQ7_096 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform Not in a motif group | homologous IL_7A0S_088 IL_76223.2 | |
| IL_5UQ7_097 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_7A0S_089 IL_90933.2 | |
| IL_5UQ7_098 | 1/A/2512:2513, 1/A/2571:2574 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_098 IL_71530.2 | |
| IL_5UQ7_099 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7A0S_091 IL_95601.3 | |
| IL_5UQ7_100 | 1/A/2588:2590, 1/A/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_5UQ7_101 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | geometric IL_4V9F_090 IL_37497.2 | |
| IL_5UQ7_102 | 1/A/2635:2640, 1/A/2774:2783 | No text annotation Not in a motif group | ||
| IL_5UQ7_103 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_5J7L_346 IL_16458.1 | |
| IL_5UQ7_104 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_7RQB_104 IL_63596.6 | |
| IL_5UQ7_105 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 IL_08296.3 | |
| IL_5UQ7_106 | 1/A/2695:2696, 1/A/2711:2714 | No text annotation Not in a motif group | ||
| IL_5UQ7_107 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7A0S_098 IL_49767.5 | |
| IL_5UQ7_108 | 1/A/2838:2839, 1/A/2878:2880 | Single bulged C Not in a motif group | homologous IL_7RQB_108 IL_61258.12 | |
| IL_5UQ7_109 | 1/A/2843:2846, 1/A/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 IL_58764.3 | |
| IL_5UQ7_110 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.5 | |
| IL_5UQ7_111 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | homologous IL_4WF9_112 IL_37497.2 | |
| IL_5UQ7_112 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_5UQ7_113 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 IL_09061.6 | |
| IL_5UQ7_114 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 IL_58103.6 | |
| IL_5UQ7_115 | 1/B/71:79, 1/B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 IL_56455.3 | |
| IL_5UQ7_116 | 1/a/30:32, 1/a/552:553 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_5UQ7_117 | 1/a/44:45, 1/a/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_5UQ7_118 | 1/a/47:52, 1/a/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_5UQ7_119 | 1/a/54:56, 1/a/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_5UQ7_120 | 1/a/63:78, 1/a/91:104 | No text annotation Not in a motif group | ||
| IL_5UQ7_121 | 1/a/129A:131, 1/a/231:232 | Multiple bulged bases Not in a motif group | homologous IL_6CZR_119 IL_16396.2 | |
| IL_5UQ7_122 | 1/a/132:136, 1/a/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_5UQ7_123 | 1/a/148:153, 1/a/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_5UQ7_124 | 1/a/186:188, 1/a/189M:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_5UQ7_125 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_5UQ7_126 | 1/a/249:252, 1/a/274:275 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_5UQ7_127 | 1/a/292:293, 1/a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5UQ7_128 | 1/a/367:369, 1/a/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.13 | |
| IL_5UQ7_129 | 1/a/371:375, 1/a/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_5UQ7_130 | 1/a/375:376, 1/a/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_5UQ7_131 | 1/a/409:416, 1/a/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5UQ7_132 | 1/a/446:450, 1/a/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_5UQ7_133 | 1/a/450:455, 1/a/476:483 | No text annotation Not in a motif group | homologous IL_4LFB_019 IL_11882.1 | |
| IL_5UQ7_134 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_5UQ7_135 | 1/a/515:521, 1/a/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_5UQ7_136 | 1/a/569:575, 1/a/880:881 | No text annotation Not in a motif group | homologous IL_5J7L_026 IL_69996.1 | |
| IL_5UQ7_137 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_5UQ7_138 | 1/a/594:596, 1/a/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_5UQ7_139 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_5UQ7_140 | 1/a/605:612, 1/a/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_5UQ7_141 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.2 | |
| IL_5UQ7_142 | 1/a/657:658, 1/a/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_5UQ7_143 | 1/a/662:666, 1/a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_5UQ7_144 | 1/a/673:678, 1/a/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_5UQ7_145 | 1/a/683:688, 1/a/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_5UQ7_146 | 1/a/774:778, 1/a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_5UQ7_147 | 1/a/779:783, 1/a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_5UQ7_148 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_5UQ7_149 | 1/a/922:923, 1/a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.2 | |
| IL_5UQ7_150 | 1/a/925:927, 1/a/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.2 | |
| IL_5UQ7_151 | 1/a/933:935, 1/a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5UQ7_152 | 1/a/953:954, 1/a/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_5UQ7_153 | 1/a/993:997, 1/a/1044:1045 | Minor groove platform Not in a motif group | homologous IL_4LFB_039 IL_47078.1 | |
| IL_5UQ7_154 | 1/a/1001A:1002, 1/a/1039:1040 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_5UQ7_155 | 1/a/1025:1028, 1/a/1033:1036 | No text annotation Not in a motif group | ||
| IL_5UQ7_156 | 1/a/1048:1050, 1/a/1208:1209 | Single bulged U Not in a motif group | geometric IL_4LFB_042 IL_83039.13 | |
| IL_5UQ7_157 | 1/a/1050:1056, 1/a/1204:1208 | No text annotation Not in a motif group | homologous IL_5J7L_047 NA | |
| IL_5UQ7_158 | 1/a/1057:1058, 1/a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_5UQ7_159 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_5UQ7_160 | 1/a/1061:1063, 1/a/1193:1195 | No text annotation Not in a motif group | homologous IL_4LFB_047 IL_95997.1 | |
| IL_5UQ7_161 | 1/a/1124:1127, 1/a/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_5UQ7_162 | 1/a/1129:1132, 1/a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_5UQ7_163 | 1/a/1158:1161, 1/a/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_5UQ7_164 | 1/a/1247:1253, 1/a/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_5UQ7_165 | 1/a/1255:1258, 1/a/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_5UQ7_166 | 1/a/1259:1260, 1/a/1274:1276 | Not an internal loop Not in a motif group | homologous IL_4LFB_053 IL_93353.1 | |
| IL_5UQ7_167 | 1/a/1260:1262, 1/a/1273:1274 | Minor groove platform Not in a motif group | geometric IL_4LFB_054 IL_93353.1 | |
| IL_5UQ7_168 | 1/a/1303:1308, 1/a/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_5UQ7_169 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5UQ7_170 | 1/a/1401:1405, 1/a/1496:1501 | No text annotation Not in a motif group | ||
| IL_5UQ7_171 | 1/a/1405:1409, 1/a/1491:1496 | No text annotation Not in a motif group | homologous IL_5J7L_060 NA | |
| IL_5UQ7_172 | 1/a/1412:1414, 1/a/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_5UQ7_173 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.9 | |
| IL_5UQ7_174 | 1/a/1431:1435, 1/a/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_5UQ7_175 | 1/a/1435:1437, 1/a/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_95997.1 | |
| IL_5UQ7_176 | 1/a/1440:1443, 1/a/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.2 | |
| IL_5UQ7_177 | 1/a/1534:1537, 1/x/6:9 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_002 IL_30621.2 | |
| IL_5UQ7_178 | 1/x/30:32, 1/x/47:49 | No text annotation Not in a motif group | geometric IL_4WF9_020 IL_95997.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5UQ7_009 | No text annotation | ||
| IL_5UQ7_040 | Kink-turn | ||
| IL_5UQ7_041 | No text annotation | ||
| IL_5UQ7_042 | No text annotation | ||
| IL_5UQ7_043 | No text annotation | ||
| IL_5UQ7_062 | No text annotation | ||
| IL_5UQ7_083 | No text annotation | ||
| IL_5UQ7_084 | No text annotation | ||
| IL_5UQ7_085 | No text annotation | ||
| IL_5UQ7_086 | No text annotation | ||
| IL_5UQ7_087 | No text annotation | ||
| IL_5UQ7_179 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5UQ7_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | ||
| J3_5UQ7_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_7RQB_002 NA | |
| J3_5UQ7_003 | 1/A/269:272B, 1/A/272V:273C, 1/A/366:370 | No text annotation Not in a motif group | homologous J3_7RQB_003 NA | |
| J3_5UQ7_004 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation Not in a motif group | ||
| J3_5UQ7_005 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | ||
| J3_5UQ7_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_5UQ7_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_5UQ7_009 | 1/A/1344:1350, 1/A/1381:1385, 1/A/1402:1403 | No text annotation Not in a motif group | homologous J3_7RQB_009 NA | |
| J3_5UQ7_010 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation Not in a motif group | ||
| J3_5UQ7_011 | 1/A/2295:2297, 1/A/2321:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
| J3_5UQ7_012 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_5UQ7_014 | 1/A/2814:2815, 1/A/2831:2836, 1/A/2882:2886 | No text annotation Not in a motif group | ||
| J3_5UQ7_015 | 1/B/11:16, 1/B/68:69, 1/B/108:110 | No text annotation Not in a motif group | homologous J3_7RQB_015 NA | |
| J3_5UQ7_016 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation Not in a motif group | ||
| J3_5UQ7_017 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation Not in a motif group | ||
| J3_5UQ7_018 | 1/a/672:673, 1/a/717:725, 1/a/732:734 | No text annotation Not in a motif group | ||
| J3_5UQ7_019 | 1/a/826:829, 1/a/857:861, 1/a/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_5UQ7_020 | 1/a/936:939, 1/a/1344:1350, 1/a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_5UQ7_021 | 1/a/943:946, 1/a/1235:1237, 1/a/1337:1340 | No text annotation Not in a motif group | ||
| J3_5UQ7_022 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation Not in a motif group | ||
| J3_5UQ7_023 | 1/a/990:993, 1/a/1045:1047, 1/a/1210:1215 | No text annotation Not in a motif group | ||
| J3_5UQ7_024 | 1/a/1002:1006, 1/a/1023:1025, 1/a/1036:1039 | No text annotation Not in a motif group | ||
| J3_5UQ7_025 | 1/a/1063:1068, 1/a/1107:1113, 1/a/1187:1193 | No text annotation Not in a motif group | ||
| J3_5UQ7_026 | 1/a/1073:1074, 1/a/1083:1087, 1/a/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_5UQ7_027 | 1/a/1116:1118, 1/a/1155:1158, 1/a/1181:1184 | No text annotation Not in a motif group | ||
| J3_5UQ7_028 | 1/a/1237:1241, 1/a/1296:1303, 1/a/1334:1337 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5UQ7_006 | No text annotation | ||
| J3_5UQ7_013 | No text annotation |
Coloring options: